Ras-like GTP-binding protein YPT1

Overview


Name	Ras-like GTP-binding protein YPT1
Smed ID	SMED30004913
Length (bp)	628

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Ras-like GTP-binding protein YPT1 (SMED30004913) t-SNE clustered cells

Violin plots show distribution of expression levels for Ras-like GTP-binding protein YPT1 (SMED30004913) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ras-like GTP-binding protein YPT1 (SMED30004913) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ras-like GTP-binding protein YPT1 (SMED30004913) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004913

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30004913	SMESG000076068.1	dd_Smed_v4_11071_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30004913	SMESG000076068.1	dd_Smed_v4_11071_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30004913	SMESG000076068.1	dd_Smed_v4_11071_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Human
Match: RAB1A (RAB1A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9758])

HSP 1 Score: 199.519 bits (506), Expect = 1.508e-64
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

[Close]

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

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BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Human
Match: RAB1B (RAB1B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18370])

HSP 1 Score: 196.052 bits (497), Expect = 3.038e-63
Identity = 88/166 (53.01%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Human
Match: AL358472.6 (novel protein)

HSP 1 Score: 182.185 bits (461), Expect = 9.163e-58
Identity = 82/168 (48.81%), Postives = 125/168 (74.40%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEV--NRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV 527
            YD L K++++GD GVGK+ L+ RFA+D FN +YI T+G+DFK+RT+ I   K+K+Q+WDTAG E++ ++T+++YRG+ GII+VY++ D+ +F+N+  W+K +  N S GV  +RLL+GNK D+  KR V  E A + A ++ ++F ETSAK+S NV+EAF SL   I+
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV--ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL 170

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Human
Match: RAB13 (RAB13, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9762])

HSP 1 Score: 182.185 bits (461), Expect = 9.163e-58
Identity = 82/168 (48.81%), Postives = 125/168 (74.40%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEV--NRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV 527
            YD L K++++GD GVGK+ L+ RFA+D FN +YI T+G+DFK+RT+ I   K+K+Q+WDTAG E++ ++T+++YRG+ GII+VY++ D+ +F+N+  W+K +  N S GV  +RLL+GNK D+  KR V  E A + A ++ ++F ETSAK+S NV+EAF SL   I+
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV--ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL 170

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BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Celegans
Match: rab-1 (RAB family [Source:UniProtKB/TrEMBL;Acc:Q9UAQ6])

HSP 1 Score: 206.838 bits (525), Expect = 7.659e-68
Identity = 99/205 (48.29%), Postives = 144/205 (70.24%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNI--SSQYQTVRLEEYRK-QDDNNKYCC 614
            M+ +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ TF NV  W++E++R       +LLVGNK DL+ KRAV T+ A+++A Q  + F+ETSAK+S NVE+AF ++   I +    +  +     VR+   +  QD  +  CC
Sbjct:    1 MAAMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYACENVNKLLVGNKCDLTAKRAVETQAAQDYAGQLGIPFLETSAKSSTNVEQAFLTMASEIKSRMGPVQGAGGAPGVRITGSQPVQDKKSGGCC 205

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BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Celegans
Match: rab-35 (RAB family [Source:UniProtKB/TrEMBL;Acc:Q9U2C3])

HSP 1 Score: 175.252 bits (443), Expect = 2.559e-55
Identity = 87/188 (46.28%), Postives = 131/188 (69.68%), Query Frame = 3

Query:   12 MSEINHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEV-NRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAF---FSLVDTIVTLTPNISSQYQT 563
            M+    YD L K++I+GD GVGKSSLL RFAD+TF+E+YI T+GVDFK+RT+ IN  +VK+QIWDTAG E++ ++TS++YRG+HG+++VY++ +  +F NV  W++E+ N    V  +++LVGNK + +++R V    A+ +A+   + F ETSAK  +NVE  F    SLV T     P  +S+ Q+
Sbjct:    1 MAGTRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMDINGQRVKLQIWDTAGQERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEIENNCDSV--QKVLVGNKCEENERRVVLESDARNYAQSMNISFFETSAKEDKNVEPMFTCITSLVLTAKLANPQSASKDQS 186

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Celegans
Match: rab-8 (RAB family; Rab8 [Source:UniProtKB/TrEMBL;Acc:G5EFC1])

HSP 1 Score: 174.866 bits (442), Expect = 3.936e-55
Identity = 72/165 (43.64%), Postives = 124/165 (75.15%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGK+ +L RF+DD+FN S+I T+G+DFK+RTI+++  K+K+QIWDTAG E++ ++T+++YRG+ GII+VY++ ++ +F+N+  WI+ +        +R+++GNK D+ ++R VS +  ++ A +   +F+ETSAK + N++EAFF+L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLARDI 169

[Close]

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGK+ +L RF+DD+FN S+I T+G+DFK+RTI+++  K+K+QIWDTAG E++ ++T+++YRG+ GII+VY++ ++ +F+N+  WI+ +        +R+++GNK D+ ++R VS +  ++ A +   +F+ETSAK + N++EAFF+L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLARDI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Celegans
Match: rab-10 (Ras-related protein Rab-10 [Source:UniProtKB/Swiss-Prot;Acc:Q94148])

HSP 1 Score: 174.096 bits (440), Expect = 5.754e-55
Identity = 74/196 (37.76%), Postives = 135/196 (68.88%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQ--TVRLEEYRKQDDNNKYC 611
            YD+L K++++GD GVGK+ +L RF+DD FN ++I T+G+DFK++TI++   K+K+QIWDTAG E++ ++T+S+YRG+ GI++VY++ +  +F N++ W++ ++        ++++GNK D+SD+R VS E  ++ A+ + + F ETSAK + +V+ AF+ L + I+   P+ + +    TV   + ++Q  +   C
Sbjct:    6 YDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNKCDMSDRRVVSRERGEKIAQDHGISFHETSAKLNVHVDTAFYDLAEAILAKMPDSTDEQSRDTVNPVQPQRQSSSGGCC 201

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
Match: Rab1 (gene:FBgn0285937 transcript:FBtr0084104)

HSP 1 Score: 201.06 bits (510), Expect = 1.868e-65
Identity = 96/205 (46.83%), Postives = 140/205 (68.29%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI---VTLTPNISSQYQTVRLEEYRKQDDNNKYCC 614
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY+  DQ +F NV  W++E+ R       +LLVGNK DL+ K+ V   TA E+A Q  + F+ETSAK++ NVE+AF ++   I   V    + +     V++++ R  ++    CC
Sbjct:    1 MSSVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRPVENTKSGCC 205

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
Match: Rab35 (gene:FBgn0031090 transcript:FBtr0333549)

HSP 1 Score: 183.341 bits (464), Expect = 1.466e-58
Identity = 92/198 (46.46%), Postives = 136/198 (68.69%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSL----VDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYC 611
            +D L K++I+GD GVGKSSLL RF+DDTF+ SYI T+GVDFK+RT+ I   +VK+QIWDTAG E++ ++TS++YRG+HG+I+VY++ +  +F NV  W++E+  +  V  K++LVGNK D  D++ V TE A+ FA+Q +++  ETSAK + NVE  F S+    +D  +  +PN   Q  T+ L+   K     K C
Sbjct:    5 FDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNCDVV-KKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPN-EQQKDTLHLKPNPKGSKGGKCC 200

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
Match: Rab35 (gene:FBgn0031090 transcript:FBtr0303258)

HSP 1 Score: 183.341 bits (464), Expect = 1.466e-58
Identity = 92/198 (46.46%), Postives = 136/198 (68.69%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSL----VDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYC 611
            +D L K++I+GD GVGKSSLL RF+DDTF+ SYI T+GVDFK+RT+ I   +VK+QIWDTAG E++ ++TS++YRG+HG+I+VY++ +  +F NV  W++E+  +  V  K++LVGNK D  D++ V TE A+ FA+Q +++  ETSAK + NVE  F S+    +D  +  +PN   Q  T+ L+   K     K C
Sbjct:    5 FDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNCDVV-KKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPN-EQQKDTLHLKPNPKGSKGGKCC 200

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
Match: Rab35 (gene:FBgn0031090 transcript:FBtr0070028)

HSP 1 Score: 183.341 bits (464), Expect = 1.466e-58
Identity = 92/198 (46.46%), Postives = 136/198 (68.69%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSL----VDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYC 611
            +D L K++I+GD GVGKSSLL RF+DDTF+ SYI T+GVDFK+RT+ I   +VK+QIWDTAG E++ ++TS++YRG+HG+I+VY++ +  +F NV  W++E+  +  V  K++LVGNK D  D++ V TE A+ FA+Q +++  ETSAK + NVE  F S+    +D  +  +PN   Q  T+ L+   K     K C
Sbjct:    5 FDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNCDVV-KKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPN-EQQKDTLHLKPNPKGSKGGKCC 200

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
Match: Rab8 (gene:FBgn0262518 transcript:FBtr0308833)

HSP 1 Score: 176.792 bits (447), Expect = 7.671e-56
Identity = 74/165 (44.85%), Postives = 124/165 (75.15%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGK+ +L RF++D FN ++I T+G+DFK+RTI+++  K+K+QIWDTAG E++ ++T+++YRG+ GI++VY++  + +F+N+  WI+ +  +     +++L+GNK +L+DKR VS E  ++ A +  ++F+ETSAK S NVEEAF +L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Zebrafish
Match: rab1aa (RAB1A, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-090312-110])

HSP 1 Score: 199.134 bits (505), Expect = 1.197e-64
Identity = 89/166 (53.61%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V    AKEFA+   + F+ETSAK+S NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTAAKEFADSLSIPFLETSAKSSTNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Zebrafish
Match: rab1ab (RAB1A, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-030616-564])

HSP 1 Score: 198.749 bits (504), Expect = 1.793e-64
Identity = 89/166 (53.61%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Zebrafish
Match: rab1ba (zRAB1B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-873])

HSP 1 Score: 197.593 bits (501), Expect = 5.759e-64
Identity = 88/166 (53.01%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLAIPFLETSAKNATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Zebrafish
Match: rab1bb (RAB1B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-040625-133])

HSP 1 Score: 197.208 bits (500), Expect = 7.163e-64
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVT-LTPNIS--SQYQTVRLEEYRKQDDNNKYC 611
             YD L K++++GD GVGKS +L RFADDT+ ES+I T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W+KE++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++ + I   + P  S  S+   +++E    Q      C
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCILLRFADDTYTESFISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLKEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAEEIKKRMRPGASGGSEKPDLKIESTPVQQSGGGCC 201

[Close]

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVT-LTPNIS--SQYQTVRLEEYRKQDDNNKYC 611
             YD L K++++GD GVGKS +L RFADDT+ ES+I T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W+KE++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++ + I   + P  S  S+   +++E    Q      C
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCILLRFADDTYTESFISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLKEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAEEIKKRMRPGASGGSEKPDLKIESTPVQQSGGGCC 201

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
Match: rab1a (RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:448007])

HSP 1 Score: 201.06 bits (510), Expect = 3.819e-65
Identity = 92/172 (53.49%), Postives = 129/172 (75.00%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 172

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
Match: rab1a (RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:448007])

HSP 1 Score: 196.438 bits (498), Expect = 2.864e-63
Identity = 88/164 (53.66%), Postives = 124/164 (75.61%), Query Frame = 3

Query:   33 DILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            D L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:   10 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 173

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
Match: maf (v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog [Source:Xenbase;Acc:XB-GENE-6053271])

HSP 1 Score: 181.415 bits (459), Expect = 1.906e-57
Identity = 86/166 (51.81%), Postives = 124/166 (74.70%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV 527
            YD L K++I+GD GVGKSSLL RFAD+TF+ SYI T+GVDFK+RT++IN  KVK+QIWDTAG E++ ++TS++YRG+HG+I+VY++    +F NV  W+ E+N++      R+LVGNK D  +++ V TE A +FA Q ++Q  ETSAK + NVEE F  + + ++
Sbjct:    5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAAQMDIQLFETSAKENLNVEEMFNCITELVL 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
Match: pknox2 (PBX/knotted 1 homeobox 2 [Source:Xenbase;Acc:XB-GENE-853128])

HSP 1 Score: 180.644 bits (457), Expect = 5.309e-57
Identity = 77/167 (46.11%), Postives = 126/167 (75.45%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVT 530
            YD L K++++GD GVGK+ LL RF++D FN ++I T+G+DFK+RTI+++  K+K+QIWDTAG E++ ++T+++YRG+ GI++VY++ ++ +F N+  WI+ +        +R+++GNK D++DKR VS E  ++ A    ++F+ETSAK+S NVEEAFF+L   I+T
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSINVEEAFFTLARDIMT 171

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
Match: rab1a (RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:448007])

HSP 1 Score: 174.866 bits (442), Expect = 5.216e-55
Identity = 79/148 (53.38%), Postives = 111/148 (75.00%), Query Frame = 3

Query:   81 SSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            S LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:   13 SCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 160

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
Match: Rab1a (RAB1A, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:97842])

HSP 1 Score: 199.519 bits (506), Expect = 1.035e-64
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
Match: Rab1a (RAB1A, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:97842])

HSP 1 Score: 197.208 bits (500), Expect = 7.807e-64
Identity = 88/166 (53.01%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
Match: Rab1b (RAB1B, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1923558])

HSP 1 Score: 196.438 bits (498), Expect = 1.751e-63
Identity = 88/166 (53.01%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
Match: Rab1b (RAB1B, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1923558])

HSP 1 Score: 193.356 bits (490), Expect = 1.567e-61
Identity = 87/164 (53.05%), Postives = 124/164 (75.61%), Query Frame = 3

Query:   33 DILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            D L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:   69 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI 232

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
Match: Rab13 (RAB13, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1927232])

HSP 1 Score: 181.415 bits (459), Expect = 1.265e-57
Identity = 87/197 (44.16%), Postives = 133/197 (67.51%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEV--NRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYCC 614
            YD L K++++GD GVGK+ L+ RFA+D FN +YI T+G+DFK+RT+ I   ++K+Q+WDTAG E++ ++T+++YRG+ GII+VY++ D+ +F+N+  W+K +  N S GV  +RLL+GNK D+  KR V  E A++ A ++ ++F ETSAK+S NV+EAF SL   I+  T    S   +       K  D  K  C
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV--ERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLKTSDKKKNKC 199

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
Match: sp|Q01890|YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans OX=4787 GN=YPT1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.469e-65
Identity = 92/166 (55.42%), Postives = 126/166 (75.90%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W+ E++R       +LLVGNK DL+ KR VST+ AKEFAE   ++F+ETSAK + NVE+AF  +   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
Match: sp|Q05974|RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis OX=6523 GN=RAB1A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.890e-64
Identity = 98/205 (47.80%), Postives = 139/205 (67.80%), Query Frame = 3

Query:   12 MSEINH-YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNI---SSQYQTVRLEEYRKQDDNNKYCC 614
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKE+A+Q  + F+ETSAK + NVE+AF ++   I      I   S    +V++        N   CC
Sbjct:    1 MSTMNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
Match: sp|Q52NJ2|RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa OX=9823 GN=RAB1A PE=2 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 5.822e-64
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
Match: sp|Q6NYB7|RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus OX=10116 GN=Rab1A PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 7.241e-64
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
Match: sp|P62821|RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus OX=10090 GN=Rab1A PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 7.241e-64
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE++F ++   I
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
Match: M2X9H6 (Rab family, other OS=Galdieria sulphuraria OX=130081 GN=Gasu_58900 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.712e-65
Identity = 100/178 (56.18%), Postives = 135/178 (75.84%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQT 563
            YD L K++++GD GVGKS LL RFADDT+NESYI T+GVDFK+RTI+++   VK+QIWDTAG E++ ++TSS+YRG+HGIIIVY++ DQ +F NV  W+ E++R       +LLVGNK DL+ K+ V T TAKEFA+   ++F+ETSAKTSENVE+AF ++   I      ++SQ QT
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYNESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKTWLHEIDRYANESVNKLLVGNKNDLTTKKVVDTATAKEFADSLGIKFLETSAKTSENVEQAFITMAQEI---KERMASQPQT 179

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
Match: A0A0D6LMF2 (Ras family protein OS=Ancylostoma ceylanicum OX=53326 GN=ANCCEY_12107 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.826e-65
Identity = 100/205 (48.78%), Postives = 145/205 (70.73%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNI--SSQYQTVRLEEYRK-QDDNNKYCC 614
            M+ +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ KRAV T+ AKE+A+Q  + F+ETSAK+S NVE+AF ++   I +    +  +     VR+   +  QD  +  CC
Sbjct:    1 MAAMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLTAKRAVETQAAKEYADQLGIPFLETSAKSSTNVEQAFLTMASEIKSRMGPVQGAGGAPAVRITGSQPVQDKKSGGCC 205

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
Match: A0A2R5GFY2 (Ras-related protein Rab-1A OS=Hondaea fermentalgiana OX=2315210 GN=FCC1311_060522 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.107e-65
Identity = 97/170 (57.06%), Postives = 131/170 (77.06%), Query Frame = 3

Query:   21 INH--YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            +NH  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGIIIVY++ DQ +F NV  W++E++R    +   LLVGNK DL++KR VS E AKEFA+  EM+F+ETSAK S NVE+AF  +   I
Sbjct:    1 MNHPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEMDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFDNVKTWLQEIDRYAAEKVNTLLVGNKSDLTNKRVVSYEAAKEFADSVEMEFLETSAKNSTNVEKAFMVMASQI 170

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
Match: A0A3P7XJS1 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS4064 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.423e-65
Identity = 96/164 (58.54%), Postives = 127/164 (77.44%), Query Frame = 3

Query:   33 DILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            D LLK++++GD GVGKS LL RFAD+TFNE+YI T+GVDFK+RTI +N   VK+QIWDTAG E++ ++TSS+YRG+ GIIIVY++ DQ+TF NV  W+ E++        RLLVGNK DL+++RAV T  AKEFA++N+M FIETSAK + NVE AF  + + I
Sbjct:   13 DYLLKLLLIGDSGVGKSCLLLRFADETFNETYISTIGVDFKIRTIDLNGKVVKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDITDQSTFANVQSWLHEISCYANSTVSRLLVGNKCDLANRRAVETSVAKEFADKNQMSFIETSAKDATNVENAFLKMAEKI 176

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
Match: A0A183LJT9 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.504e-65
Identity = 96/164 (58.54%), Postives = 127/164 (77.44%), Query Frame = 3

Query:   33 DILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            D LLK++++GD GVGKS LL RFAD+TFNE+YI T+GVDFK+RTI +N   VK+QIWDTAG E++ ++TSS+YRG+ GIIIVY++ DQ+TF NV  W+ E++        RLLVGNK DL+++RAV T  AKEFA++N+M FIETSAK + NVE AF  + + I
Sbjct:   13 DYLLKLLLIGDSGVGKSCLLLRFADETFNETYISTIGVDFKIRTIDLNGKVVKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDITDQSTFANVQSWLHEISCYANSTVSRLLVGNKCDLANRRAVETSVAKEFADKNQMSFIETSAKDATNVENAFLKMAEKI 176

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
Match: rab1ab (ras-related protein Rab-1A [Source:NCBI gene;Acc:103035225])

HSP 1 Score: 198.749 bits (504), Expect = 1.535e-64
Identity = 89/166 (53.61%), Postives = 125/166 (75.30%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
Match: zgc:171927 (ras-related protein ORAB-1-like [Source:NCBI gene;Acc:103045400])

HSP 1 Score: 197.978 bits (502), Expect = 3.974e-64
Identity = 93/182 (51.10%), Postives = 134/182 (73.63%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRL 572
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   VK+QIWDTAG E++ ++TSS+YRG+HGIIIVY++ DQ +F N+  W++E++R       +LLVGNK DL+ K+ V   TAKEFAE  ++ F+E+SAK + NVE+AF ++   I     + + Q +TV++
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEMDGKIVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNLKQWLEEIDRYACENVSKLLVGNKSDLTSKKVVDFTTAKEFAEPLKIPFLESSAKNASNVEKAFLTMASEIQKRLGSENVQNETVKV 185

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
Match: ENSAMXT00000045110.1 (ras-related protein Rab-1A [Source:NCBI gene;Acc:103028654])

HSP 1 Score: 196.052 bits (497), Expect = 1.865e-63
Identity = 87/166 (52.41%), Postives = 124/166 (74.70%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +L+VGNK DL+ K+ V   TAKEFA+   + F+E SAK + NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASESVNKLMVGNKCDLTTKKVVDYTTAKEFADSLGIPFLEASAKNATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
Match: rab1ba (zRAB1B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-873])

HSP 1 Score: 196.052 bits (497), Expect = 3.859e-63
Identity = 87/165 (52.73%), Postives = 125/165 (75.76%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            +D L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ ++ NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I
Sbjct:   26 HDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLAIPFLETSAKNATNVEQAFMTMAAEI 190

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
Match: rab13 (RAB13, member RAS oncogene family [Source:NCBI gene;Acc:103044636])

HSP 1 Score: 182.185 bits (461), Expect = 5.057e-58
Identity = 77/167 (46.11%), Postives = 123/167 (73.65%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV 527
             YD L K++++GD GVGK+ L+ RFA+D FN +YI T+G+DFK++TI++   KVK+Q+WDTAG E++ ++T+++YRG+ GII+VY++ D+ +F+N+  W+K +  +      R+L+GNK D+  KR VS E  ++ A+ + ++F ETSAK+S NVEE+F SL   I+
Sbjct:    4 KYDFLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIEVEGKKVKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRKVSKEMGEKLAKDHGIRFFETSAKSSINVEESFMSLARDIL 170

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
Match: rab1aa (RAB1A, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-090312-110])

HSP 1 Score: 203.371 bits (516), Expect = 6.185e-67
Identity = 93/172 (54.07%), Postives = 130/172 (75.58%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+  E+ F+ETSAK + NVE+AF ++   I
Sbjct:    1 MSTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLEIPFLETSAKNATNVEQAFMTMAAEI 172

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
Match: rab8a (RAB8A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-070424-36])

HSP 1 Score: 173.326 bits (438), Expect = 3.412e-55
Identity = 71/165 (43.03%), Postives = 124/165 (75.15%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGK+ +L RF++D FN ++I T+G+DFK+RTI ++  K+K+QIWDTAG E++ ++T+++YRG+ GI++VY++ ++ +F+N+  WI+ +        +++++GNK D++++R V+ E  ++ A +  ++F+ETSAK S NVEEAFF+L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIDLDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADVEKMILGNKCDMNERRQVTRERGEKLAIEYGIKFMETSAKASINVEEAFFTLARDI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
Match: rab3c (RAB3C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-263])

HSP 1 Score: 159.844 bits (403), Expect = 1.342e-49
Identity = 69/167 (41.32%), Postives = 118/167 (70.66%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV 527
            ++D + K++I+G+  VGK+S L R+AD++F  +++ T+G+DFK++T+  NE ++K+QIWDTAG E+Y ++T+++YRG+ G I++Y++ ++++F  VS W  ++   +    + +LVGNK D+ D R V TE  ++ AEQ   +F ETSAK + NV++ F  LVD I 
Sbjct:   25 NFDYMFKLLIIGNSSVGKTSFLFRYADESFTSAFVSTVGIDFKVKTVYRNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDSFNAVSDWSTQIKTYSWDNAQVVLVGNKCDMEDDRMVPTEQGRQLAEQLGFEFFETSAKDNINVKQTFERLVDVIC 191

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
Match: rab30 (RAB30, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-250])

HSP 1 Score: 158.688 bits (400), Expect = 2.333e-49
Identity = 67/161 (41.61%), Postives = 110/161 (68.32%), Query Frame = 3

Query:   33 DILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLV 515
            D+L KI+++G+ GVGK+ L+ RF    F      T+GVDF ++T++++ +K+K+QIWDTAG E++ S+T S+YR +H +++ Y++  + TF  +  W++E+ +       R+LVGNKLDL+D R V+ E A+ FA  + ++++ETSAK +ENVE  F  L 
Sbjct:    7 DLLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGTKIKLQIWDTAGQERFRSITQSYYRSAHALVLTYDVSSEETFACLPAWLREMEQHASAHVPRVLVGNKLDLADVRQVTREQAEAFARLHGLRYLETSAKEAENVERLFVELA 167

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
Match: rab8a (RAB8A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-070424-36])

HSP 1 Score: 155.221 bits (391), Expect = 5.611e-48
Identity = 69/167 (41.32%), Postives = 117/167 (70.06%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLR--TIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGK+ +L RF++D FN ++I T+G    +    I+I+  K+K+QIWDTAG E++ ++T+++YRG+ G ++VY++ ++ +F+N+  WI+ +        ++ +VGNK D++D+R V+ +  ++ AE   +QF+ETSAK S NVEEAFF+L   I
Sbjct:    5 YDCLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGGSRPVCQVCIRIDLKKIKLQIWDTAGQERFRTITTAYYRGAMGSMLVYDITNEKSFENIKNWIRNIEEHASADVQK-MVGNKCDMNDRRQVTKDRGEKLAEDYNIQFMETSAKASINVEEAFFTLAREI 170

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
Match: YPT1 (Rab family GTPase; involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by type II protein geranylgeranyltransferase (Bet2p-Bet4p); binds to unspliced HAC1 mRNA; regulates the unfolded protein response (UPR) by promoting the decay of HAC1 RNA; localizes to the early Golgi, the transitional Golgi and ER membranes, pre-autophagosomal structures, and cytoplasmic vesicles [Source:SGD;Acc:S000001856])

HSP 1 Score: 195.667 bits (496), Expect = 3.976e-64
Identity = 88/167 (52.69%), Postives = 124/167 (74.25%), Query Frame = 3

Query:   24 NHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            + YD L K++++G+ GVGKS LL RF+DDT+   YI T+GVDFK++T++++   VK+QIWDTAG E++ ++TSS+YRGSHGIIIVY++ DQ +F  V  W++E++R       +LLVGNK DL DKR V  + AKEFA+ N+M F+ETSA  S NVE+AF ++   I
Sbjct:    3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
Match: SEC4 (Rab family GTPase; essential for vesicle-mediated exocytic secretion and autophagy; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane [Source:SGD;Acc:S000001889])

HSP 1 Score: 171.014 bits (432), Expect = 2.526e-54
Identity = 78/165 (47.27%), Postives = 117/165 (70.91%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD ++KI+++GD GVGKS LL RF +D FN S+I T+G+DFK++T+ IN  KVK+Q+WDTAG E++ ++T+++YRG+ GII+VY++ D+ TF N+  W K VN       + LLVGNK D+ + R V+ +  +  A++  + FIE+SAK  +NV E FF+L   I
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
Match: YPT31 (Rab family GTPase; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; YPT31 has a paralog, YPT32, that arose from the whole genome duplication; localizes to the transitional and late Golgi [Source:SGD;Acc:S000000833])

HSP 1 Score: 165.236 bits (417), Expect = 6.418e-52
Identity = 76/165 (46.06%), Postives = 119/165 (72.12%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD+L KI+++GD GVGKS+LL+RF  + FN     T+GV+F  RT++I+  ++K QIWDTAG E+Y ++TS++YRG+ G +IVY++   ++++N ++W+ E+  +        L+GNK DL+  RAV TE +K FA++N++ F ETSA  SENV++AF  L++TI
Sbjct:   10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
Match: YPT32 (Rab family GTPase involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; protein abundance increases in response to DNA replication stress; YPT32 has a paralog, YPT31, that arose from the whole genome duplication [Source:SGD;Acc:S000003178])

HSP 1 Score: 161.384 bits (407), Expect = 1.632e-50
Identity = 87/213 (40.85%), Postives = 129/213 (60.56%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTL------------TPNISS----QYQTVRLEEYRKQDDNNKY--CC 614
            YD L KI+++GD GVGKS+LL+RF  D FN     T+GV+F  RTI++   K+K QIWDTAG E+Y ++TS++YRG+ G +IVY++   ++++N ++W+ E+  +        L+GNK DL+  RAV T+ AK FA +N+M F ETSA  S+NV++AF  L+  I  +            T N+ S    +  T+ L    K+D   K   CC
Sbjct:   10 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
Match: YPT6 (Rab family GTPase; required for endosome-to-Golgii, intra-Golgi retrograde, and retrograde Golgi-to-ER transport; temporarily at the Golgi, dissociating into the cytosol on arrival of the late Golgi GTPase Ypt32p; Golgi-localized form is GTP bound, while cytosolic form is GDP-bound; required for delivery of Atg9p to the phagophore assembly site during autophagy under heat stress, with Ypt6p for starvation induced autophagy and for the CVT pathway; homolog of mammalian Rab6 [Source:SGD;Acc:S000004252])

HSP 1 Score: 123.25 bits (308), Expect = 1.241e-35
Identity = 64/155 (41.29%), Postives = 102/155 (65.81%), Query Frame = 3

Query:   45 KIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRL-LVGNKLDLSDKRAVSTETAKEFAEQNEMQ-FIETSAKTSENVEEAF 503
            KI+ +G+ GVGK+SL+ RF  DTF++ Y  T+G+DF  +T+ +++  +++Q+WDTAG E++ SL  S+ R S   IIVY++  + +F+ +  WI++V    G  N  L +VGNK DLSD+R +STE  ++ A+    + F+ETS K   NV+  F
Sbjct:   12 KIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALF 166

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
Match: EDO40167 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S806])

HSP 1 Score: 200.675 bits (509), Expect = 1.149e-65
Identity = 96/205 (46.83%), Postives = 137/205 (66.83%), Query Frame = 3

Query:   12 MSEIN-HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI---VTLTPNISSQYQTVRLEEYRKQDDNNKYCC 614
            MS +N  YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKE+AE   + F+ETSAK + NVE+AF ++   I   +  +P        V++            CC
Sbjct:    1 MSTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLTTKKVVDFTTAKEYAESLGVPFLETSAKNATNVEQAFMTMAAEIKNRMGPSPAPQGAGSNVKINSSTPVKQGGGGCC 205

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
Match: EDO42144 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2G3])

HSP 1 Score: 182.185 bits (461), Expect = 2.244e-58
Identity = 83/164 (50.61%), Postives = 121/164 (73.78%), Query Frame = 3

Query:   24 NHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLV 515
            + YD L K++++GD GVGKSSLL RFADDTF+ +YI T+GVDFK+RT+ ++   +K+QIWDTAG E++ +LT+++YR +HGI+++Y++ +  TF ++S W++EV+         +LVGNK DL D R V   TAKEFAE+ ++ FIETSAK S NVE  F ++ 
Sbjct:    3 SEYDYLFKLLLIGDSGVGKSSLLLRFADDTFSNTYISTIGVDFKIRTLTVDGKTIKLQIWDTAGQERFRTLTTAYYRSAHGIVLIYDVNESETFLHLSQWLEEVSEYACEGVNTILVGNKCDLIDCRQVGYNTAKEFAEKLDISFIETSAKDSTNVESVFRTMA 166

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
Match: EDO47471 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMA6])

HSP 1 Score: 177.178 bits (448), Expect = 1.915e-56
Identity = 78/195 (40.00%), Postives = 133/195 (68.21%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYCC 614
            YD L K++++GD GVGK+ +L RF+DD FN ++I T+G+DFK++TI++   K+K+QIWDTAG E++ ++T+S+YRG+ GI++VY++  + TF N+S W++ +        +++++GNK D+ D+R VS E  ++ A ++ ++F+ETSAKT+ N+E+AF  L   I+    N  S+  +  +  +  Q D    CC
Sbjct:    6 YDYLFKLLLIGDSGVGKTCILFRFSDDAFNTTFISTIGIDFKIKTIEMQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNISKWLRNIEEHANEDVEKMILGNKCDMDDRRIVSRERGEQIAREHGIRFLETSAKTNINIEQAFQYLAQDILKKELNKDSEEPSNNIHVH-DQKDKKGGCC 199

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
Match: EDO41018 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5I6])

HSP 1 Score: 176.022 bits (445), Expect = 6.336e-56
Identity = 73/165 (44.24%), Postives = 123/165 (74.55%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGK+ +L RF++D FN ++I T+G+DFK+RTI+++  K+K+QIWDTAG E++ ++T+++YRG+ GI++VY++ +  +F+N+  WI+ +        +++++GNK D+ D+R VS E  ++ A +  ++F+ETSAK S NVEEAFF+L   I
Sbjct:    5 YDFLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNDKSFENIKNWIRNIEEHASQDVEKMVLGNKCDMEDRRQVSKERGEQLAVEYGIKFMETSAKASINVEEAFFTLARDI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
Match: EDO43129 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZN1])

HSP 1 Score: 174.866 bits (442), Expect = 1.503e-55
Identity = 78/161 (48.45%), Postives = 116/161 (72.05%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSL 512
            YD L KI+++GD GVGKS LL RF DD+  ESY  T+GVDFK++T++++   VK+QIWDTAG E++ ++TSS+YRG+HG++IVY++  + ++ N+  W+ EV          +LVGNK+DL   R V  + A+E+A  ++M F+ETSAK ++NV+EAF  L
Sbjct:   13 YDYLFKILLIGDSGVGKSCLLLRFVDDSHRESYQTTIGVDFKIKTMRVDGKVVKLQIWDTAGQERFRTITSSYYRGAHGVMIVYDITKRESYNNLHKWLMEVETYASEGVHMILVGNKIDLDTDREVQPDAAQEWAALHDMPFVETSAKGAKNVKEAFLVL 173

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Medaka
Match: rab1ab (ras-related protein ORAB-1 [Source:NCBI gene;Acc:101161080])

HSP 1 Score: 198.749 bits (504), Expect = 1.525e-64
Identity = 94/199 (47.24%), Postives = 136/199 (68.34%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVT-LTPN--ISSQYQTVRLEEYRKQDDNNKYCC 614
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ K+ V   TAKEFA+   + F+ETSAK + NVE+AF ++   I   + P   +  +   V+L        ++  CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATVGGEKPNVKLTPGTSVKPSSGGCC 202

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Medaka
Match: rab1aa (ras-related protein Rab-1A [Source:NCBI gene;Acc:101162421])

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-64
Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W++E++R       +LLVGNK DL+ ++ V   TAKEFA+   + F+ETSAK++ NVE+AF ++   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTRKVVDYTTAKEFADNLGIPFLETSAKSATNVEQAFMTMAAEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Medaka
Match: zgc:171927 (ras-related protein ORAB-1-like [Source:NCBI gene;Acc:101173484])

HSP 1 Score: 193.356 bits (490), Expect = 2.791e-62
Identity = 89/165 (53.94%), Postives = 123/165 (74.55%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI ++   VK+QIWDTAG E++ ++TSS+YRG+HGIIIVY++ +Q +F NV  W++E++R       RLLVGNK DL  K+ V   TA++ A   ++ F+ETSAK+S NVE+AF ++   I
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDMDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEQESFNNVRQWLEEIDRYACENVSRLLVGNKSDLVSKKVVDAATAQDLASSLKIPFLETSAKSSGNVEKAFLTMASEI 169

[Close]

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTI 524
            YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI ++   VK+QIWDTAG E++ ++TSS+YRG+HGIIIVY++ +Q +F NV  W++E++R       RLLVGNK DL  K+ V   TA++ A   ++ F+ETSAK+S NVE+AF ++   I
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDMDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEQESFNNVRQWLEEIDRYACENVSRLLVGNKSDLVSKKVVDAATAQDLASSLKIPFLETSAKSSGNVEKAFLTMASEI 169

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Medaka
Match: ENSORLT00000032751.1 (RAB13, member RAS oncogene family [Source:NCBI gene;Acc:101156603])

HSP 1 Score: 180.644 bits (457), Expect = 1.988e-57
Identity = 80/168 (47.62%), Postives = 128/168 (76.19%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEV--NRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV 527
            YD L K++++GD GVGK+ L+ RFA+D +N +YI T+G+DFK++TI+++  KVK+Q+WDTAG E++ ++T+++YRG+ GII+VY++ D+ +F+N+  W+K +  N S GV   R+L+GNK D+  KR VS ET +  A+++ ++F ETSAK+S NVEE+F +L   I+
Sbjct:    5 YDFLFKLLLIGDSGVGKTCLIIRFAEDNYNTTYISTIGIDFKVKTIEVDGKKVKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIRENASAGV--TRMLLGNKCDVEAKRKVSKETGETLAKEHAIRFFETSAKSSINVEESFQALARDIL 170

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST
Match: SMESG000076068.1 (SMESG000076068.1)

HSP 1 Score: 413.305 bits (1061), Expect = 1.841e-149
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 3

Query:   12 MSEINHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYCC 614
            MSEINHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYCC
Sbjct:    1 MSEINHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYCC 201

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST
Match: SMESG000076066.1 (SMESG000076066.1)

HSP 1 Score: 228.794 bits (582), Expect = 1.524e-76
Identity = 102/184 (55.43%), Postives = 144/184 (78.26%), Query Frame = 3

Query:   30 YDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEY 581
            YD + KI+I+GD  VGK+SLL+RF DD FNE+Y+ TLGVDFKL+T+K+N+  VK+ IWDTAG E Y SLT++FYRG HG ++V++L ++ +F N+S+W+KE++++    N RLLVGNKLDL+D+R VS E AK FA+  ++Q+IETSAK+SENVEEAF +L D ++TL PN   Q   ++L+ +
Sbjct:    6 YDFIFKIVIIGDAHVGKTSLLSRFTDDKFNENYLNTLGVDFKLKTVKVNDHVVKLNIWDTAGEELYNSLTTAFYRGCHGFVLVFSLTEKKSFTNLSHWLKEIDKNANSTNVRLLVGNKLDLNDERVVSFEQAKIFADSRKLQYIETSAKSSENVEEAFLTLADDVITLFPNSKLQNDVIKLDTH 189

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST
Match: SMESG000026323.1 (SMESG000026323.1)

HSP 1 Score: 202.986 bits (515), Expect = 3.115e-66
Identity = 96/198 (48.48%), Postives = 137/198 (69.19%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVTLT--PNISSQYQTVRLEEYRKQDDNNKYCC 614
             YD L K++++GD GVGKS LL RFADDT+ ESYI T+GVDFK+RTI+++   +K+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ++F NV  W+ E++R       +LLVGNK DL  KR V    AKE+A+   + F+ETSAK + NVE+AF ++   I + +  P  SSQ  TV++    +    +  CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLSEIDRYANENVNKLLVGNKTDLISKRVVEASNAKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASSSQKPTVKVGSATQPVKASSGCC 201

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST
Match: SMESG000049854.1 (SMESG000049854.1)

HSP 1 Score: 194.897 bits (494), Expect = 4.255e-63
Identity = 94/199 (47.24%), Postives = 136/199 (68.34%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIVT-LTP--NISSQYQTVRLEEYRKQDDNNKYCC 614
             YD L K++++GD GVGKS +L RFADDT+ +SYI T+GVDFK+RTI+++   VK+QIWDTAG E++ ++TSS+YRG+HGII+VY++ DQ +F NV  W+ E+ R       +LL+GNK D+  K+ V + TAKEFA+   + F+ETSA+ S NVE+ F ++   I   L P    S+Q  +VR+    K   ++  CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLIGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAASNQRPSVRVGAATKPVKSSSGCC 202

[Close]

BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST
Match: SMESG000030620.1 (SMESG000030620.1)

HSP 1 Score: 182.185 bits (461), Expect = 3.315e-58
Identity = 89/184 (48.37%), Postives = 130/184 (70.65%), Query Frame = 3

Query:   27 HYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLRTIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQNVSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFIETSAKTSENVEEAFFSLVDTIV--TLTPNISSQYQTVRL 572
            +YD LLK++++GD  VGKSSLL RF DD F++SYI T+GVDFK    +INE KVK+Q+WDT+G +++ ++T+S+YRGS G ++VY++ D+N+F  +S W+  +N+S+    K +LVGNK D  DKR ++ E  K+FA  NE+ F ETSAK S NV+EAF +L   I+      N+S Q +  +L
Sbjct:    4 NYDYLLKLVLIGDSKVGKSSLLVRFVDDIFSDSYISTIGVDFKTLVTEINEEKVKLQMWDTSGQKRFDTITTSYYRGSSGFLLVYDVTDRNSFTRLSEWMTRINKSSDKNCKIILVGNKSDQKDKREITYEEGKQFAATNEIMFCETSAK-SANVDEAFKTLATEIIRKVYLINVSEQQKKSKL 186

The following BLAST results are available for this feature:

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Human
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Celegans
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Zebrafish
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Medaka
BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RAB1A	1.508e-64	52.91	RAB1A, member RAS oncogene family [Source:HGNC Sym...	[more]
RAB1A	1.508e-64	52.91	RAB1A, member RAS oncogene family [Source:HGNC Sym...	[more]
RAB1B	3.038e-63	53.01	RAB1B, member RAS oncogene family [Source:HGNC Sym...	[more]
AL358472.6	9.163e-58	48.81	novel protein	[more]
RAB13	9.163e-58	48.81	RAB13, member RAS oncogene family [Source:HGNC Sym...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rab-1	7.659e-68	48.29	RAB family [Source:UniProtKB/TrEMBL;Acc:Q9UAQ6]	[more]
rab-35	2.559e-55	46.28	RAB family [Source:UniProtKB/TrEMBL;Acc:Q9U2C3]	[more]
rab-8	3.936e-55	43.64	RAB family; Rab8 [Source:UniProtKB/TrEMBL;Acc:G5E...	[more]
rab-8	3.936e-55	43.64	RAB family; Rab8 [Source:UniProtKB/TrEMBL;Acc:G5E...	[more]
rab-10	5.754e-55	37.76	Ras-related protein Rab-10 [Source:UniProtKB/Swis...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rab1	1.868e-65	46.83	gene:FBgn0285937 transcript:FBtr0084104	[more]
Rab35	1.466e-58	46.46	gene:FBgn0031090 transcript:FBtr0333549	[more]
Rab35	1.466e-58	46.46	gene:FBgn0031090 transcript:FBtr0303258	[more]
Rab35	1.466e-58	46.46	gene:FBgn0031090 transcript:FBtr0070028	[more]
Rab8	7.671e-56	44.85	gene:FBgn0262518 transcript:FBtr0308833	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rab1aa	1.197e-64	53.61	RAB1A, member RAS oncogene family a [Source:ZFIN;A...	[more]
rab1ab	1.793e-64	53.61	RAB1A, member RAS oncogene family b [Source:ZFIN;A...	[more]
rab1ba	5.759e-64	53.01	zRAB1B, member RAS oncogene family a [Source:ZFIN;...	[more]
rab1bb	7.163e-64	46.97	RAB1B, member RAS oncogene family b [Source:ZFIN;A...	[more]
rab1bb	7.163e-64	46.97	RAB1B, member RAS oncogene family b [Source:ZFIN;A...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rab1a	3.819e-65	53.49	RAB1A, member RAS oncogene family [Source:NCBI gen...	[more]
rab1a	2.864e-63	53.66	RAB1A, member RAS oncogene family [Source:NCBI gen...	[more]
maf	1.906e-57	51.81	v-maf avian musculoaponeurotic fibrosarcoma oncoge...	[more]
pknox2	5.309e-57	46.11	PBX/knotted 1 homeobox 2 [Source:Xenbase;Acc:XB-GE...	[more]
rab1a	5.216e-55	53.38	RAB1A, member RAS oncogene family [Source:NCBI gen...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rab1a	1.035e-64	52.91	RAB1A, member RAS oncogene family [Source:MGI Symb...	[more]
Rab1a	7.807e-64	53.01	RAB1A, member RAS oncogene family [Source:MGI Symb...	[more]
Rab1b	1.751e-63	53.01	RAB1B, member RAS oncogene family [Source:MGI Symb...	[more]
Rab1b	1.567e-61	53.05	RAB1B, member RAS oncogene family [Source:MGI Symb...	[more]
Rab13	1.265e-57	44.16	RAB13, member RAS oncogene family [Source:MGI Symb...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q01890\|YPT1_PHYIN	2.469e-65	55.42	Ras-like GTP-binding protein YPT1 OS=Phytophthora ...	[more]
sp\|Q05974\|RAB1A_LYMST	4.890e-64	47.80	Ras-related protein Rab-1A OS=Lymnaea stagnalis OX...	[more]
sp\|Q52NJ2\|RAB1A_PIG	5.822e-64	52.91	Ras-related protein Rab-1A OS=Sus scrofa OX=9823 G...	[more]
sp\|Q6NYB7\|RAB1A_RAT	7.241e-64	52.91	Ras-related protein Rab-1A OS=Rattus norvegicus OX...	[more]
sp\|P62821\|RAB1A_MOUSE	7.241e-64	52.91	Ras-related protein Rab-1A OS=Mus musculus OX=1009...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
M2X9H6	1.712e-65	56.18	Rab family, other OS=Galdieria sulphuraria OX=1300...	[more]
A0A0D6LMF2	1.826e-65	48.78	Ras family protein OS=Ancylostoma ceylanicum OX=53...	[more]
A0A2R5GFY2	2.107e-65	57.06	Ras-related protein Rab-1A OS=Hondaea fermentalgia...	[more]
A0A3P7XJS1	2.423e-65	58.54	Uncharacterized protein OS=Schistosoma margrebowie...	[more]
A0A183LJT9	2.504e-65	58.54	Uncharacterized protein OS=Schistosoma margrebowie...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rab1ab	1.535e-64	53.61	ras-related protein Rab-1A [Source:NCBI gene;Acc:1...	[more]
zgc:171927	3.974e-64	51.10	ras-related protein ORAB-1-like [Source:NCBI gene;...	[more]
ENSAMXT00000045110.1	1.865e-63	52.41	ras-related protein Rab-1A [Source:NCBI gene;Acc:1...	[more]
rab1ba	3.859e-63	52.73	zRAB1B, member RAS oncogene family a [Source:ZFIN;...	[more]
rab13	5.057e-58	46.11	RAB13, member RAS oncogene family [Source:NCBI gen...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rab1aa	6.185e-67	54.07	RAB1A, member RAS oncogene family a [Source:ZFIN;A...	[more]
rab8a	3.412e-55	43.03	RAB8A, member RAS oncogene family [Source:ZFIN;Acc...	[more]
rab3c	1.342e-49	41.32	RAB3C, member RAS oncogene family [Source:ZFIN;Acc...	[more]
rab30	2.333e-49	41.61	RAB30, member RAS oncogene family [Source:ZFIN;Acc...	[more]
rab8a	5.611e-48	41.32	RAB8A, member RAS oncogene family [Source:ZFIN;Acc...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5


Match Name	E-value	Identity	Description
YPT1	3.976e-64	52.69	Rab family GTPase; involved in the ER-to-Golgi ste...	[more]
SEC4	2.526e-54	47.27	Rab family GTPase; essential for vesicle-mediated ...	[more]
YPT31	6.418e-52	46.06	Rab family GTPase; involved in the exocytic pathwa...	[more]
YPT32	1.632e-50	40.85	Rab family GTPase involved in the exocytic pathway...	[more]
YPT6	1.241e-35	41.29	Rab family GTPase; required for endosome-to-Golgii...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO40167	1.149e-65	46.83	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42144	2.244e-58	50.61	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO47471	1.915e-56	40.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO41018	6.336e-56	44.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43129	1.503e-55	48.45	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rab1ab	1.525e-64	47.24	ras-related protein ORAB-1 [Source:NCBI gene;Acc:1...	[more]
rab1aa	2.115e-64	53.01	ras-related protein Rab-1A [Source:NCBI gene;Acc:1...	[more]
zgc:171927	2.791e-62	53.94	ras-related protein ORAB-1-like [Source:NCBI gene;...	[more]
zgc:171927	2.791e-62	53.94	ras-related protein ORAB-1-like [Source:NCBI gene;...	[more]
ENSORLT00000032751.1	1.988e-57	47.62	RAB13, member RAS oncogene family [Source:NCBI gen...	[more]

BLAST of Ras-like GTP-binding protein YPT1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000076068.1	1.841e-149	100.00	SMESG000076068.1	[more]
SMESG000076066.1	1.524e-76	55.43	SMESG000076066.1	[more]
SMESG000026323.1	3.115e-66	48.48	SMESG000026323.1	[more]
SMESG000049854.1	4.255e-63	47.24	SMESG000049854.1	[more]
SMESG000030620.1	3.315e-58	48.37	SMESG000030620.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004913 ID=SMED30004913|Name=Ras-like GTP-binding protein YPT1|organism=Schmidtea mediterranea sexual|type=transcript|length=628bp
TTGAACTCTAAATGAGTGAAATTAACCACTATGATATTTTATTGAAAATT
ATAATAGTCGGAGATCCGGGAGTTGGTAAATCATCATTATTGGCAAGATT
TGCGGATGATACTTTTAATGAATCTTACATTCAAACTTTAGGTGTGGATT
TTAAACTCAGGACAATAAAAATAAATGAATCTAAAGTAAAAATACAAATT
TGGGATACCGCAGGAACTGAGAAATATGCTTCTTTAACATCATCATTTTA
TCGAGGAAGTCATGGGATTATAATTGTTTACAATCTAATAGATCAGAATA
CATTCCAAAACGTTTCATATTGGATTAAAGAAGTTAACAGAAGTACTGGC
GTTCGAAATAAAAGACTACTTGTCGGGAATAAATTAGATCTTTCTGACAA
ACGTGCTGTGTCTACTGAAACAGCGAAGGAATTTGCTGAGCAAAACGAGA
TGCAATTTATAGAAACTAGTGCCAAAACTTCTGAAAATGTTGAGGAAGCT
TTCTTCTCATTGGTTGATACTATTGTTACCTTAACTCCTAATATTTCTTC
TCAGTACCAAACAGTTAGATTAGAAGAATATAGAAAGCAGGATGATAACA
ATAAATATTGTTGCTGATCTTCAATGCT

protein sequence of SMED30004913-orf-1

>SMED30004913-orf-1 ID=SMED30004913-orf-1|Name=SMED30004913-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=202bp
MSEINHYDILLKIIIVGDPGVGKSSLLARFADDTFNESYIQTLGVDFKLR
TIKINESKVKIQIWDTAGTEKYASLTSSFYRGSHGIIIVYNLIDQNTFQN
VSYWIKEVNRSTGVRNKRLLVGNKLDLSDKRAVSTETAKEFAEQNEMQFI
ETSAKTSENVEEAFFSLVDTIVTLTPNISSQYQTVRLEEYRKQDDNNKYC
C*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0000139	Golgi membrane
GO:0005737	cytoplasm
GO:0005789	endoplasmic reticulum membrane
GO:0016020	membrane
GO:0034045	pre-autophagosomal structure membrane
GO:0005783	endoplasmic reticulum
GO:0005794	Golgi apparatus

Vocabulary: **molecular function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0000166	nucleotide binding

Vocabulary: **biological process**
Term	Definition
GO:0006914	autophagy
GO:0007264	small GTPase mediated signal transduction
GO:0006810	transport
GO:0015031	protein transport
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR001806	Small_GTPase

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 34..50 score: 33.53 coord: 114..127 score: 45.25 coord: 52..74 score: 40.52 coord: 149..171 score: 46.81 coord: 11..32 score: 49.03
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 13..174 e-value: 1.4E-12 score: 41.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 11..174 e-value: 6.0E-78 score: 275.0
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 16..199 e-value: 1.3E-5 score: 30.6
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 10..174 e-value: 9.2E-30 score: 114.9
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 4..201 e-value: 1.3E-63 score: 215.9
None	No IPR available	PANTHER	PTHR24073:SF963	RAS-RELATED PROTEIN RAB-1A	coord: 4..175
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 4..175
None	No IPR available	PROSITE	PS51419	RAB	coord: 6..201 score: 33.18
None	No IPR available	CDD	cd00154	Rab	coord: 11..169 e-value: 9.8245E-79 score: 230.42
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 12..172 e-value: 8.7E-59 score: 197.7
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 11..164 e-value: 1.2E-30 score: 104.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 7..184