SMED30004893
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004893 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of SMED30004893 vs. Planmine SMEST
Match: SMESG000071513.1 (SMESG000071513.1) HSP 1 Score: 1319.68 bits (3414), Expect = 0.000e+0 Identity = 660/661 (99.85%), Postives = 661/661 (100.00%), Query Frame = 3 Query: 75 MNTNLIFITNIPKSQRPILLLKELNNKWSKMVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEIDEGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCXXXXXXXXXXXXXVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD 2057 MNTNLIFITNIPKSQRPILLLKELNNKWSKMVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEI+EGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCKPPKPKKSESTSKVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD Sbjct: 1 MNTNLIFITNIPKSQRPILLLKELNNKWSKMVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEIEEGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCKPPKPKKSESTSKVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD 661
BLAST of SMED30004893 vs. Planmine SMEST
Match: SMESG000071513.1 (SMESG000071513.1) HSP 1 Score: 1260.74 bits (3261), Expect = 0.000e+0 Identity = 630/631 (99.84%), Postives = 631/631 (100.00%), Query Frame = 3 Query: 165 MVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEIDEGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCXXXXXXXXXXXXXVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD 2057 MVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEI+EGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCKPPKPKKSESTSKVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD Sbjct: 1 MVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEIEEGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCKPPKPKKSESTSKVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD 631
BLAST of SMED30004893 vs. Planmine SMEST
Match: SMESG000071513.1 (SMESG000071513.1) HSP 1 Score: 1042.72 bits (2695), Expect = 0.000e+0 Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 3 Query: 489 WIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCXXXXXXXXXXXXXVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD 2057 WIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCKPPKPKKSESTSKVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD Sbjct: 41 WIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCKPPKPKKSESTSKVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDPRNVWMKEPPEKRFKD 563 HSP 2 Score: 82.4185 bits (202), Expect = 4.885e-16 Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 Query: 229 MLIYLIKELKNYEEKKLMKALHYKCIMSGFLHQTFIYQLIY 351 MLIYLIKELKNYEEKKL KALHYKCIMSGFLHQTFIYQLI+ Sbjct: 1 MLIYLIKELKNYEEKKLRKALHYKCIMSGFLHQTFIYQLIW 41
BLAST of SMED30004893 vs. Planmine SMEST
Match: SMESG000024144.1 (SMESG000024144.1) HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0 Identity = 356/643 (55.37%), Postives = 486/643 (75.58%), Query Frame = 3 Query: 75 MNTNLIFITNIPKSQRPIL---LLKELNNKWSKMVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEIDEGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCXXXXXXXXXXXXXVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPEISDRKPVHISRKIDTSNELISLKTINSVTVETVEIIDEICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRS 1994 MN+N IFI++IPK Q L +L+NKWS+ +YID+P +E VD F+YN T ++ FDKG+E+L+RKE + LQVYY+WFP PNV +++ IP+G+ MLPY++VD +PK +EV++VIG+LPFKAND KEWDI K+DK +V+RLP D+ TRNY L YLRNK++ KG+ PRVTE+F+S+E LS+IM PK SL+ +SYK NLIF YDLP R++ H IVDAL+D+DYRHCKAYL+D+ +Q RLGFIS SKS P KF +L+ KLKT+ I+ S GK+KLNISEVWLQPVNC+PP+ KKS++ KVEF+L NYIYLHN+S S+Q DLT KSPV FRV++Y QDS QIGF + D+ E KV ++I YLRSL+F+ LP+LVDE+WIKE DLPEI DR+ VH RK S E + T+E ++II+E+ ++F IK A++PP+ SNL KS++I L NLP + N S D+N+ GLCLM++ EK+ FLYHRQVS++KW++ L+KI +++N RRI+ KEIYLM DE+I+LIQ+KY +IYLS+Y+FVYN+G + + ++E D H+ I++H M D+ RC+F+QLR+D++P +IIEVL +IRTL + GK+++ADL+WLAN+ + + RS Sbjct: 1 MNSNFIFISSIPKCQISNFSKDLDSKLDNKWSRTLYIDDPCNESVDVFIYNPTSSISHFDKGVERLKRKE-ENCVQLQVYYIWFPAPNVNMASLIPKGTNMLPYLIVDCIPKYVEVHDVIGDLPFKANDFKEWDISYKEDKCLVLRLPKCPDEITRNYALCYLRNKKLPKGVLPRVTEVFISKEPRLSKIMFPKIWYSLNETNSYKSNLIFIYDLPPRISSHDIVDALRDIDYRHCKAYLVDVVDQLRLGFISTSKSMPADKFEDLVNKLKTISIDAGSLGKLKLNISEVWLQPVNCEPPRVKKSDADRKVEFVLTNYIYLHNLSQSIQPLDLTLKSPVNFRVNLYQCQDSKRQIGFVPLIDMSERKVNKIIDYLRSLVFEGLPVLVDEIWIKEYDLPEIEDRRLVHCPRKSSRSFE-----NFQNRTIEALDIIEEVNLNRQFGIKCADEPPSFSNLHKSNIILLRNLPLDFNGSTDSLDLNI-TSGLCLMESVNEKIGFLYHRQVSDVKWMDFLEKISFSNVNGRRIIVKEIYLMYDESIDLIQTKYQAIYLSNYIFVYNIGMNGDLKLDELDKHSSIVKHVSMNADNGARCSFIQLREDISPFEIIEVLQFIRTLKVCGKVLFADLVWLANVNIDESSRS 636
BLAST of SMED30004893 vs. Planmine SMEST
Match: SMESG000052914.1 (SMESG000052914.1) HSP 1 Score: 514.998 bits (1325), Expect = 9.625e-174 Identity = 284/678 (41.89%), Postives = 430/678 (63.42%), Query Frame = 3 Query: 75 MNTNLIFITNIPKSQRPILLLKELNNKWSKMVYIDNPYSELVDAFVYNLTPNVDLFDKGIEKLRRKEIDEGTPLQVYYVWFPPPNVYISTNIPEGSIMLPYILVDSLPKEIEVNEVIGNLPFKANDVKEWDIPQKDDKWIVIRLPITNDDSTRNYVLNYLRNKRIGKGIFPRVTEMFVSEESCLSRIMVPKSLRSLSIIHSYKCNLIFTYDLPTRLTGHHIVDALKDLDYRHCKAYLIDITEQQRLGFISASKSFPDYKFNELIQKLKTLEIEVTSFGKVKLNISEVWLQPVNCX-XXXXXXXXXXXXVEFILINYIYLHNISSSVQSSDLTNKSPVPFRVHIYHSQDSNTQIGFASVQDIHESKVGRLITYLRSLIFDCLPLLVDEMWIKECDLPE-ISDRKPVHISRK-IDTSNELIS-----LKTINSVTVE--TVEIID-----EICAGKEFIIKLAEDPPTSSNLMKSHMIFLMNLPPNLNKSRIIFDMNVPCEGLCLMQTATEKVAFLYHRQVSELKWLEVLDKICSTSINDRRIVAKEIYLMSDETIELIQSKYPSIYLSSYVFVYNLGSDSEPNMEEFDTHAYIIRHCFMTTDSNTRCAFVQLRDDLTPPQIIEVLNYIRTLNIGGKIVWADLMWLANITLMDVVRSASFGDP---RNVWMKE--PPEKR 2048 MNTNLI +TNIPK R L+KEL NKW+++++IDNPY++L +AF+YN T + F+ G+ +LR K I+ PL+VY++WFPPPNVY++ IPE + MLP + VD+LPKE + EVIG+LPF++NDVK WDIPQK+DKW+V+RLP+ D++ R+YVL Y+R +R+ G+FPRV E+FVSE+ LS+ MVPK+L+ L I S+K NL+F YDLPT+LT I DA K L + KA+ ID+ + R+GF+ KSFPD KF + LK EI V S V LN++EV+LQP P KK + +E++L NY+Y+HN+++ + + L S + F+++++ ++ TQ+GF ++ + + + +LI +LRSL+F+ ++VD +++K D+P+ S+R+ VH+ R+ +D + + S I V +E VE+ID +I KE ++++ DPP NLMKS IF+ LP + S + + C+ L +M K+AFLY+ + KW+ L+K+ +T I + + E+YL SDE E++ I S+YVFVYN+G S+ E +T+ I+R MT +S + CAFV+L LT + IE LNYIR +++ GK + ADL+WL VR+ + DP R+ W+K+ PP K+ Sbjct: 1 MNTNLILVTNIPKHIRHFDLIKELENKWARLIFIDNPYADLQEAFIYNPTSLLTHFEMGVSRLRSKVINGIRPLKVYHLWFPPPNVYLTNLIPENATMLPVLFVDNLPKECDSYEVIGDLPFQSNDVKHWDIPQKEDKWMVLRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITASFKSNLLFLYDLPTKLTVKGISDAAKALGVKGSKAFFIDVVDSLRVGFLFVPKSFPDSKFEFFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHKKRDDDRTIEYVLTNYVYVHNVAAGIDHNQLAKGSTINFKIYLFQIFENTTQVGFVCLRGLSDVAISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRTVHVPREPLDNVDNITSHVDNTFVDITEVNLEESEVEVIDTDEENDIEMLKECSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSL-LPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTN--IVRFSTMTQESGS-CAFVELASGLTALEKIETLNYIRDISLRGKNLCADLIWLG------TVRNKTKSDPNALRSQWLKKSGPPSKK 668 The following BLAST results are available for this feature:
BLAST of SMED30004893 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30004893 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30004893 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30004893 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30004893 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004893 ID=SMED30004893|Name=SMED30004893|organism=Schmidtea mediterranea sexual|type=transcript|length=2285bpback to top protein sequence of SMED30004893-orf-1 >SMED30004893-orf-1 ID=SMED30004893-orf-1|Name=SMED30004893-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=662bp MNTNLIFITNIPKSQRPILLLKELNNKWSKMVYIDNPYSELVDAFVYNLTback to top Annotated Terms
The following terms have been associated with this transcript:
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