SMED30004833

Overview
NameSMED30004833
Smed IDSMED30004833
Length (bp)1533
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004833 (SMED30004833) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004833 (SMED30004833) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004833 (SMED30004833) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004833 (SMED30004833) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004833

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
posterior sideSMED30004833 dd_Smed_v4_33060_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30004833 dd_Smed_v4_33060_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30004833 vs. TrEMBL
Match: D2CG37 (Uncharacterized protein OS=Tribolium castaneum OX=7070 GN=GLEAN_10694 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.968e-14
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = -1 
Query:  250 MLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW 513
            +L KLK  G+ I+ C G+ Y+NA  M G H G+  R   I  K   V C NH  N A VH A   VN++TFFG +E+ F   S S   W
Sbjct:    2 ILQKLKKDGIDIQNCRGQAYDNAAVMAGQHTGVQKRIKEINPKVEFVACTNHSLNLAGVHAASVAVNSVTFFGTMERLFLFFSSSTHRW 90

HSP 2 Score: 35.4242 bits (80), Expect = 2.968e-14
Identity = 26/93 (27.96%), Postives = 43/93 (46.24%), Query Frame = -3 
Query:    2 NKSVKRVCETH*SSKHDAVASNTEGLVNLY-----------NSCVRAILKLQKLTLEIFILICFISSFQTYLMKEIKETQNTLQPKDLGLYKC 247
             + VKR+ ET  S++ DAV+   +    +            N   R+   +    L+ F  +CF+  F   ++KEI ++Q  LQ K L L +C
Sbjct:   98 GQDVKRLIETRWSARGDAVSVVRKAYSKILTVLEDLTGEKENGTTRSDAGVLLAALQSFSFLCFL-GFWDSVLKEINDSQAYLQTKKLNLQQC 189
[Close]
BLAST of SMED30004833 vs. TrEMBL
Match: A0A3L8D616 (Dimer_Tnp_hAT domain-containing protein OS=Ooceraea biroi OX=2015173 GN=DMN91_011674 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.334e-13
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -1 
Query:  250 TEQMLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW 522
            T  +L K+   GL I+ C G+ Y+NA  M G+H  + +R  +I  +A  V C NH  N A +H A + V ++TFFG +E+ F   S S   W
Sbjct:   18 TAMILTKISKDGLDIQNCRGQAYDNAAVMAGVHTRVQVRIKSINPRAQFVACTNHSLNLAGIHAASEAVQSVTFFGTVEQVFVFFSSSTHRW 109

HSP 2 Score: 33.8834 bits (76), Expect = 1.334e-13
Identity = 25/100 (25.00%), Postives = 47/100 (47.00%), Query Frame = -3 
Query:    2 LVNKSVKRVCETH*SSKHDAVASNTEGLVNLYNSCVRAILKLQKLT----------------LEIFILICFISSFQTYLMKEIKETQNTLQPKDLGLYKC 253
            +  + VKR+ ET  S++H+AV    E   N ++  +  + KL   T                L+    +C++  + + ++KE+ + QN LQ K L + +C
Sbjct:  115 VTGQGVKRLIETRWSARHEAV----EAFKNHFSDILNVLEKLASDTNENIVTRSEAGLLLKALQSLSFLCYLGLW-SQVLKEVNDAQNYLQTKGLNIEQC 209
[Close]
BLAST of SMED30004833 vs. TrEMBL
Match: A0A026WGR2 (Zinc finger MYM-type protein OS=Ooceraea biroi OX=2015173 GN=X777_05348 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.900e-13
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = -1 
Query:  250 MLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW 513
            +L K+   GL I+ C G+ Y+NA  M G+H  + +R  +I  +A  V C NH  N A +H A + V ++TFFG +E+ F   S S   W
Sbjct:    2 ILTKISKDGLDIQNCRGQAYDNAAVMAGVHTRVQVRIKSINPRAQFVACTNHSLNLAGIHAASEAVQSVTFFGTVEQVFVFFSSSTHRW 90

HSP 2 Score: 34.2686 bits (77), Expect = 1.900e-13
Identity = 25/100 (25.00%), Postives = 47/100 (47.00%), Query Frame = -3 
Query:    2 LVNKSVKRVCETH*SSKHDAVASNTEGLVNLYNSCVRAILKLQKLT----------------LEIFILICFISSFQTYLMKEIKETQNTLQPKDLGLYKC 253
            +  + VKR+ ET  S++H+AV    E   N ++  +  + KL   T                L+    +C++  + + ++KE+ + QN LQ K L + +C
Sbjct:   96 VTGQGVKRLIETRWSARHEAV----EAFKNHFSDILNVLEKLASDTNENIVTRSEAGLLLKALQSLSFLCYLGLW-SQVLKEVNDAQNYLQTKGLNIEQC 190
[Close]
BLAST of SMED30004833 vs. TrEMBL
Match: A0A0L8HCR5 (DUF4371 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22017424mg PE=4 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.339e-13
Identity = 28/97 (28.87%), Postives = 47/97 (48.45%), Query Frame = -1 
Query:  235 TEQMLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW*IKVS 522
            T  +L +L+   + I+ C G+ ++NA    G    +  R + +  K   V C NH  N A V+ A    +++TFFG +++ F   S S   W I + 
Sbjct:  376 TSMILQQLEMDDINIQDCRGQTFDNASVKAGHRSSVQARITEVNPKIVFVPCTNHSLNLAAVYAASVGADSVTFFGTLDRFFSFFSASTHRWDISIE 472

HSP 2 Score: 46.9802 bits (110), Expect = 7.339e-13
Identity = 39/137 (28.47%), Postives = 73/137 (53.28%), Query Frame = -2 
Query:  615 DHETSQTHLVAFDVWKEMAVPVGAG*MIDGDK------DVAK*RNVLKRIGDEFV----QNFALRRHDEKL-LEEFDINSGIFIELMKVMGKYD----ENTS**TDTQSEFIS-----LQAAIIYDFQNEKYFTIIF 965
            ++E+S  H  AF  WKE+ + +  G +I  ++      +  K + +L R  D  +    QN ALR H E + +E+ + N G F+EL++++GK+D    E+       ++EF++     ++  +I + +  KY+ IIF
Sbjct:  196 ENESSPVHENAFTQWKELEIRLFKGMVIGKEQQTLVENETKKWKQILTRFLDIIMFLAKQNLALRGHREDIRVEKANENEGNFLELVQLIGKFDPVLREHL-----VKNEFVNVLGDRVRKKVIDEVKQSKYYCIIF 327

HSP 3 Score: 23.0978 bits (48), Expect = 7.339e-13
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = -3 
Query: 1004 AFYCFCCGLFNPD 1042
            A +CFCC LF+ D
Sbjct:  170 AVFCFCCKLFSSD 182

HSP 4 Score: 21.1718 bits (43), Expect = 7.339e-13
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = -3 
Query:  575 TNINQTSHILRY 610
            ++INQ S +LRY
Sbjct:  334 SHINQISQVLRY 345
[Close]
BLAST of SMED30004833 vs. TrEMBL
Match: A0A1Y1NBI7 (DUF4371 domain-containing protein (Fragment) OS=Photinus pyralis OX=7054 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.902e-12
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = -1 
Query:  199 MLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEKF-CLISLSPCSW*IKVSNEFVRLTRVPNT 513
            +L KLK  GL I  C G+GY+NA  M G H G+  R S++  KA  + C NH  N A +H A+  VN++TFFG +++     SLS   W +  +     L R+ +T
Sbjct:   62 ILEKLKSDGLDIMNCRGQGYDNAAVMKGQHSGVQKRISDVNPKAQFIACSNHSLNLAGIHAAQAEVNSVTFFGTLDRLHSFFSLSTHRWDVLSTTTGTSLKRLVDT 167
[Close]
BLAST of SMED30004833 vs. Ensembl Cavefish
Match: ENSAMXT00000025204.2 (pep primary_assembly:Astyanax_mexicanus-2.0:12:7364240:7371214:-1 gene:ENSAMXG00000024490.2 transcript:ENSAMXT00000025204.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.1434 bits (126), Expect = 6.238e-7
Identity = 30/92 (32.61%), Postives = 47/92 (51.09%), Query Frame = -1 
Query:  250 TEQMLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW 522
            TE +L  L+   L I  C G+ Y+N   M G   G+  R   + +KA C+ C +HK N      A+  V + +FFG++++ + L S S   W
Sbjct:  303 TEVLLDHLQKHNLSISDCRGQSYDNGSNMMGQKQGVRARILQLNNKALCIPCSSHKLNLVVADAAKSSVLSTSFFGVLQRLYNLFSSSVQRW 394
[Close]
BLAST of SMED30004833 vs. Ensembl Cavefish
Match: ENSAMXT00000036272.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:11935414:11938921:1 gene:ENSAMXG00000041670.1 transcript:ENSAMXT00000036272.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 7.638e-7
Identity = 28/91 (30.77%), Postives = 45/91 (49.45%), Query Frame = -1 
Query:  244 MLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW*I 513
            +L KL+  G+  E C G+ Y+N   M G   G+  R   +  +AA V C  H  N      A+   +A+++FG +++ FC  S +   W I
Sbjct:  386 VLEKLRALGIPFEDCRGQAYDNGANMKGKRQGVQARLLQLNPRAAFVPCAAHTMNLVISDAAKSSTDAISYFGYLQRLFCFFSAATQRWDI 476
[Close]
BLAST of SMED30004833 vs. Ensembl Cavefish
Match: ENSAMXT00000055782.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001476.1:1798:4262:-1 gene:ENSAMXG00000042376.1 transcript:ENSAMXT00000055782.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 2.607e-6
Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = -1 
Query:  250 KLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIE-KFCLISLSPCSW 504
            +LK+  L I  C G+ YNN   M G   G+  R   I  KA CV C +H  N      A+  V ++TFFGI++  + L S S   W
Sbjct:  336 ELKHMKLNIADCRGQSYNNGSNMMGHKQGVQKRVLEINQKALCVPCSSHSLNLVVADAAKSSVLSVTFFGILQWLYNLFSSSVHRW 421
[Close]
BLAST of SMED30004833 vs. Ensembl Cavefish
Match: ENSAMXT00000044961.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000032.1:419978:423709:1 gene:ENSAMXG00000036481.1 transcript:ENSAMXT00000044961.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 2.810e-6
Identity = 29/92 (31.52%), Postives = 46/92 (50.00%), Query Frame = -1 
Query:  250 TEQMLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW 522
            TE +L  L+   L I  C G+ Y+N   M G   G+  R   + +KA C+ C +H  N      A+  V + +FFG++++ + L S S   W
Sbjct:  357 TEVLLDHLQKHNLSISDCRGQSYDNGSNMMGQKQGVQARILQLNNKALCIPCSSHTLNLVVADAAKSSVLSTSFFGVLQRLYNLFSSSVQRW 448
[Close]
BLAST of SMED30004833 vs. Ensembl Cavefish
Match: ENSAMXT00000033195.1 (pep primary_assembly:Astyanax_mexicanus-2.0:16:11277158:11279506:-1 gene:ENSAMXG00000030798.1 transcript:ENSAMXT00000033195.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 9.573e-6
Identity = 32/109 (29.36%), Postives = 49/109 (44.95%), Query Frame = -1 
Query:  199 TEQMLYKLKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEK-FCLISLSPCSW*IKVSNEFVRLTRVPNT 522
            +E ++  L+  G+ ++ C G+GY+N   M+G   G+  +       A    C  H  N   VH AE      TFFG + + + L S SP  W I        L R+ +T
Sbjct:  340 SEMIIEALQSNGIPLQECRGQGYDNGANMSGKVKGVQAQILKANPLATFSPCATHTLNLVGVHAAESCPEVATFFGSVNRLYNLFSASPERWAILKEKTGCSLHRLSDT 448
[Close]
BLAST of SMED30004833 vs. Planmine SMEST
Match: SMESG000069312.1 (SMESG000069312.1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.454e-9
Identity = 47/146 (32.19%), Postives = 68/146 (46.58%), Query Frame = -2 
Query:  615 HETSQTHLVAFDVWKEMAVPVGAG*MIDGD------KDVAK*RNVLKRIGD--EFV--QNFALRRHDEKLLEEFDINSGIFIELMKVMGKYDENTS**TD---------------TQSEFISLQAA-----IIYDFQNEKYFTIIF 962
            HE S TH  +F  WKE    + +G  ID +       +  K R+VLKR+    +F+  QN ALR H E L      N G F+  +K++ +YD   S   D               TQ+E ISL A+     ++ D +  KY+ I+F
Sbjct:  225 HENSPTHRASFTAWKEAERRIMSGKGIDAELQAQMQNEKQKWRDVLKRLLSCVKFLASQNLALRGHAESLATNNSSNVGNFLATLKLLAEYDPLLSNHIDHARQNPGSVSYLSPQTQNESISLLASKVRNKLLNDIKRNKYYGILF 370

HSP 2 Score: 22.7126 bits (47), Expect = 5.454e-9
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = -3 
Query: 1013 YCFCCGLF 1036
            YCFCC LF
Sbjct:  189 YCFCCLLF 196

HSP 3 Score: 45.0542 bits (105), Expect = 4.408e-6
Identity = 29/85 (34.12%), Postives = 42/85 (49.41%), Query Frame = -1 
Query:  250 LKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEKFCL-ISLSPCSW 501
            L+   L ++ C  + Y+NA  M+G   G+  R  N   +A  V C NH  N A +H A++   A+TFF  I+   L  S S   W
Sbjct:  427 LEADNLRLDDCRSQCYDNAALMSGHISGLQQRICNRNPRAIFVNCNNHSLNLAGMHSAKQDAVAVTFFRTIKSIYLYFSRSTLRW 511

HSP 4 Score: 24.6386 bits (52), Expect = 4.408e-6
Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = -3 
Query:  170 LVNKSVKRVCETH*SSKHDAVASNTEGL 253
            +++ +VKR CET  S++ DAV +   G+
Sbjct:  517 VISNTVKRECETRWSARADAVKAVHNGV 544
[Close]
BLAST of SMED30004833 vs. Planmine SMEST
Match: SMESG000049700.1 (SMESG000049700.1)

HSP 1 Score: 46.9802 bits (110), Expect = 2.540e-6
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = -1 
Query:  250 LKYGGLYIEYCSGEGYNNAPTMTGIHIGMGMRFSNIYSKAACVLCMNHK*N*ARVHCAEKVVNALTFFGIIEKFCL-ISLSPCSW 501
            L+   L ++ C  + Y+NA  M+G   G+  R  N   +A  V C N+  N A +H A++   A+TFFG IE   L  S S   W
Sbjct:  317 LEADNLRLDDCRSQCYDNAALMSGHISGLQQRICNRNPRAIFVNCNNYSLNLAGMHSAKQDAVAVTFFGTIESIYLYFSRSTLRW 401

HSP 2 Score: 23.8682 bits (50), Expect = 2.540e-6
Identity = 10/28 (35.71%), Postives = 19/28 (67.86%), Query Frame = -3 
Query:  170 LVNKSVKRVCETH*SSKHDAVASNTEGL 253
            +++ +VKR C+T  S++ DAV +   G+
Sbjct:  407 VISNTVKRECDTRWSARADAVKAVHNGV 434
The following BLAST results are available for this feature:
BLAST of SMED30004833 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
D2CG372.968e-1442.70Uncharacterized protein OS=Tribolium castaneum OX=... [more]
A0A3L8D6161.334e-1338.04Dimer_Tnp_hAT domain-containing protein OS=Oocerae... [more]
A0A026WGR21.900e-1338.20Zinc finger MYM-type protein OS=Ooceraea biroi OX=... [more]
A0A0L8HCR57.339e-1328.87DUF4371 domain-containing protein OS=Octopus bimac... [more]
A0A1Y1NBI71.902e-1238.68DUF4371 domain-containing protein (Fragment) OS=Ph... [more]
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BLAST of SMED30004833 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000025204.26.238e-732.61pep primary_assembly:Astyanax_mexicanus-2.0:12:736... [more]
ENSAMXT00000036272.17.638e-730.77pep primary_assembly:Astyanax_mexicanus-2.0:20:119... [more]
ENSAMXT00000055782.12.607e-637.21pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000044961.12.810e-631.52pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000033195.19.573e-629.36pep primary_assembly:Astyanax_mexicanus-2.0:16:112... [more]
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BLAST of SMED30004833 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004833 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000069312.15.454e-932.19SMESG000069312.1[more]
SMESG000049700.12.540e-635.29SMESG000049700.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004833 ID=SMED30004833|Name=SMED30004833|organism=Schmidtea mediterranea sexual|type=transcript|length=1533bp
CACATTTATATAAACCAAGATCTTTTGGTTGCAGAGTATTTTGAGTTTCC
TTTATTTCTTTCATCAAGTAGGTTTGAAAAGAACTAATAAAGCATATTAA
TATGAATATTTCCAGCGTCAGTTTCTGCAGTTTCAGAATCGCCCTCACGC
AGCTGTTATAGAGATTCACTAATCCTTCTGTATTTGAAGCTACTGCATCG
TGTTTGGAACTCTAGTGAGTCTCACAAACTCGTTTGACACTTTTATTTAC
CAGGAACACGGGGACAGTGAAATAAGACAGAATTTTTCAATAATTCCAAA
AAATGTTAGTGCATTAACAACTTTCTCAGCACAATGAACTCTTGCTCAAT
TTCATTTATGATTCATACAAAGCACACATGCAGCTTTTGAATAAATATTT
GAGAAACGCATTCCCATCCCAATATGTATTCCAGTCATCGTCGGGGCATT
GTTGTATCCTTCACCACTGCAATATTCTATATAAAGTCCGCCATATTTTA
GTTTATAGAGCATCTGTTCTGTTTGCACTGGTATAAATCGACAATCAATT
CTTTGGTCTCACAGGTTTTTCAACATAACGCAGTATATGAGACGTCTGAT
TAATATTTGTTTACGAAAATAATTGTAAAATACTTTTCATTCTGAAAGTC
ATATATAATAGCAGCTTGTAGGGAAATAAATTCGCTCTGAGTGTCAGTTT
ATTATGATGTGTTCTCATCATATTTTCCCATTACTTTCATTAATTCAATA
AAAATTCCAGAATTAATATCAAATTCTTCTAATAATTTCTCGTCATGTCT
TCTAAGAGCAAAATTTTGTACAAATTCATCCCCAATTCGTTTTAAAACAT
TTCTTCATTTGGCAACATCTTTATCACCATCAATCATTTAACCTGCTCCA
ACAGGTACTGCCATTTCTTTCCAAACATCAAAAGCCACCAGGTGAGTTTG
GCTAGTTTCATGATCCGTTTTCTAAAATCTTCAAAGCCTCCAAATCAACT
ATAATCAGGATTAAAAAGGCCACAACAAAAACAATAGAATGCAACTAAAG
AAAAAACATCCATGATCGTAAAATTTTTCATTGCTTTGTATTTTTTGAAA
AACCGCTATGTTATGGTTGGTATTGATAAGTGTGCTATTCAAAAAACGTC
TTTCAAATTACAAGTTCTCTCCTTAAATTATTACTGCCAATGATCTACAT
CAGTCAAAACAAAAAAAAACTAGTCCACTTTGTTTCAGGTTTCCTAGACA
TCTATGTTGCTCTCCATGATGTTCAAGTTAAAATGGTGCATCTGACTTAT
TATCGTGAAAAATCATATAACTTATTTCAAATTTTTCAATTATTACTCGA
CTGGTCTTATCTTCTTGAACACGAAGTGATAAGTCAATTACTTTGCCACA
ATCATCCAAATCAAATATAACTGTTTTAATGTTCCGAAGTAGAATTAAAA
ATAATTGATAGTAGCAGAACTAGTGGTATCCGGTTTTTGAGCTTGTTGTA
TTCATAAGCACTTCGTTTTTGTCTTTTTTTGTT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal