60S ribosomal protein L27a

Overview
Name60S ribosomal protein L27a
Smed IDSMED30004808
Length (bp)447
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L27a (SMED30004808) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L27a (SMED30004808) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L27a (SMED30004808) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L27a (SMED30004808) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004808

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30004808h1SMcG0004846 SmedASXL_002684SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30004808h1SMcG0004846 dd_Smed_v4_549_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004808h1SMcG0004846 dd_Smed_v6_549_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Human
Match: RPL27A (ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329])

HSP 1 Score: 174.481 bits (441), Expect = 2.672e-56
Identity = 102/141 (72.34%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            +++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGM+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Human
Match: RPL27A (ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329])

HSP 1 Score: 130.568 bits (327), Expect = 9.333e-40
Identity = 56/87 (64.37%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:  187 MRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            M+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 87
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Human
Match: RPL27A (ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329])

HSP 1 Score: 130.568 bits (327), Expect = 9.333e-40
Identity = 56/87 (64.37%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:  187 MRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            M+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 87
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Human
Match: RPL27A (ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329])

HSP 1 Score: 130.568 bits (327), Expect = 9.333e-40
Identity = 56/87 (64.37%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:  187 MRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            M+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 87
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Human
Match: RPL27A (ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329])

HSP 1 Score: 130.568 bits (327), Expect = 9.333e-40
Identity = 56/87 (64.37%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:  187 MRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            M+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 87
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Celegans
Match: Y37E3.8 (pep chromosome:WBcel235:I:2069681:2070607:-1 gene:WBGene00021350.1 transcript:Y37E3.8a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y37E3.8)

HSP 1 Score: 154.451 bits (389), Expect = 6.733e-49
Identity = 97/140 (69.29%), Postives = 118/140 (84.29%), Query Frame = 1 
Query:   28 VKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            ++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRI+ DK+HPGYFGKVGMR +HL KN+ +CP++N+E+LWSLV     E   +   GK+PVID  K GYFK+LGKG+LP+ P+IVKA+FFS +AE+KIK  GGAC
Sbjct:    5 LRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQHYCPTVNVERLWSLVPQ---EVRDKATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGAC 141
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Celegans
Match: Y37E3.8 (pep chromosome:WBcel235:I:2069683:2070209:-1 gene:WBGene00021350.1 transcript:Y37E3.8b.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y37E3.8)

HSP 1 Score: 107.457 bits (267), Expect = 3.918e-31
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:  187 MRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MR +HL KN+ +CP++N+E+LWSLV     E   +   GK+PVID  K GYFK+LGKG+LP+ P+IVKA+FFS +AE+KIK  GGAC
Sbjct:    1 MRVFHLNKNQHYCPTVNVERLWSLVPQ---EVRDKATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGAC 84
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Celegans
Match: Y37E3.8 (pep chromosome:WBcel235:I:2069683:2070574:-1 gene:WBGene00021350.1 transcript:Y37E3.8b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y37E3.8)

HSP 1 Score: 107.457 bits (267), Expect = 3.918e-31
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:  187 MRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MR +HL KN+ +CP++N+E+LWSLV     E   +   GK+PVID  K GYFK+LGKG+LP+ P+IVKA+FFS +AE+KIK  GGAC
Sbjct:    1 MRVFHLNKNQHYCPTVNVERLWSLVPQ---EVRDKATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGAC 84
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Fly
Match: RpL27A (gene:FBgn0285948 transcript:FBtr0345285)

HSP 1 Score: 155.606 bits (392), Expect = 2.939e-49
Identity = 99/145 (68.28%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MS IK KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMR++HLR+   F P +N++KLWSLV  + +   ++    KAPVIDL+K GY+KLLG+G LP  PVIVKAK+FS++AE+KIK  GG C
Sbjct:    1 MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Fly
Match: RpL27A (gene:FBgn0285948 transcript:FBtr0077452)

HSP 1 Score: 155.606 bits (392), Expect = 2.939e-49
Identity = 99/145 (68.28%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MS IK KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMR++HLR+   F P +N++KLWSLV  + +   ++    KAPVIDL+K GY+KLLG+G LP  PVIVKAK+FS++AE+KIK  GG C
Sbjct:    1 MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Fly
Match: RpL27A (gene:FBgn0285948 transcript:FBtr0335136)

HSP 1 Score: 155.606 bits (392), Expect = 2.939e-49
Identity = 99/145 (68.28%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MS IK KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMR++HLR+   F P +N++KLWSLV  + +   ++    KAPVIDL+K GY+KLLG+G LP  PVIVKAK+FS++AE+KIK  GG C
Sbjct:    1 MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Xenopus
Match: rpl27a (ribosomal protein L27a [Source:NCBI gene;Acc:100170552])

HSP 1 Score: 178.333 bits (451), Expect = 5.554e-58
Identity = 106/141 (75.18%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            K++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL+KN++FCP++N++KLW+LVS++T   + +N EG AP+I+ + AGY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    4 KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNPEGPAPIINAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Xenopus
Match: rpl27a (ribosomal protein L27a [Source:NCBI gene;Acc:100170552])

HSP 1 Score: 178.333 bits (451), Expect = 5.559e-58
Identity = 106/141 (75.18%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            K++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL+KN++FCP++N++KLW+LVS++T   + +N EG AP+I+ + AGY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    3 KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNPEGPAPIINAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGAC 143
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Xenopus
Match: rpl27a (ribosomal protein L27a [Source:NCBI gene;Acc:100170552])

HSP 1 Score: 178.333 bits (451), Expect = 6.825e-58
Identity = 106/141 (75.18%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            K++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL+KN++FCP++N++KLW+LVS++T   + +N EG AP+I+ + AGY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    6 KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNPEGPAPIINAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGAC 146
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Mouse
Match: Rpl27a (ribosomal protein L27A [Source:MGI Symbol;Acc:MGI:1347076])

HSP 1 Score: 174.096 bits (440), Expect = 2.003e-56
Identity = 102/141 (72.34%), Postives = 128/141 (90.78%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            +++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK VGGAC
Sbjct:    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. UniProt/SwissProt
Match: sp|P47830|RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis OX=8355 GN=rpl27a PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 7.328e-58
Identity = 107/141 (75.89%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            K++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL+KN++FCP++N++KLW+LVS++T   + +N EG AP+ID + AGY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    4 KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. UniProt/SwissProt
Match: sp|Q56K03|RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 7.030e-56
Identity = 102/141 (72.34%), Postives = 128/141 (90.78%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            +++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK VGGAC
Sbjct:    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. UniProt/SwissProt
Match: sp|P18445|RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.089e-55
Identity = 102/141 (72.34%), Postives = 128/141 (90.78%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            +++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGMRHYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK VGGAC
Sbjct:    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. UniProt/SwissProt
Match: sp|Q5REY2|RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii OX=9601 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.283e-55
Identity = 102/141 (72.34%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            +++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGM+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. UniProt/SwissProt
Match: sp|P46776|RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens OX=9606 GN=RPL27A PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.283e-55
Identity = 102/141 (72.34%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:   25 KVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            +++KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRI+ DK+HPGYFGKVGM+HYHL++N++FCP++N++KLW+LVS++T     +N  G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIKSVGGAC
Sbjct:    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. TrEMBL
Match: D3PHZ9 (60S ribosomal protein L27a OS=Lepeophtheirus salmonis OX=72036 GN=RL27A PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.487e-62
Identity = 115/145 (79.31%), Postives = 136/145 (93.79%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSK+K  KTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRI+ DK+HPGYFGK+GMRHYHL+KN ++CP++N++++WSLVS+KTY+ Y+++ EGKAPVID +K GYFK+LGKGVLPKVPVIVKA+FFSRQAEEKIK VGGAC
Sbjct:    1 MSKLKPTKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKIGMRHYHLKKNVSWCPTVNLDRVWSLVSEKTYQKYRDDKEGKAPVIDCVKHGYFKVLGKGVLPKVPVIVKARFFSRQAEEKIKKVGGAC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. TrEMBL
Match: A0A4S2LM24 (Ribosomal_L18e/L15P domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007592 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.891e-61
Identity = 119/145 (82.07%), Postives = 134/145 (92.41%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSKIK KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAG +HHHRI+MDK+HPGY GKVGMRHYH +KN  FCP++NIEK+WSLVS  TYE YK++A+GKAPVID LK GYFK+LGKGVLPKVPVIVKA+FFSR+AEEKI++VGGAC
Sbjct:   32 MSKIKPKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGLEHHHRINMDKYHPGYIGKVGMRHYHYKKNPYFCPAINIEKIWSLVSQDTYEKYKDHADGKAPVIDCLKKGYFKVLGKGVLPKVPVIVKARFFSRRAEEKIRAVGGAC 176
[Close]
BLAST of 60S ribosomal protein L27a vs. TrEMBL
Match: A0A068YJK8 (Large subunit ribosomal protein L27Ae OS=Echinococcus multilocularis OX=6211 GN=EmuJ_001015500 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.502e-61
Identity = 112/145 (77.24%), Postives = 133/145 (91.72%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSKIK KKTRKLRGHVSHG GRVGKHRKHPGGRGNAGG+HHHRI+ +K+HPGYFGK+GM HYHLR+N  +CP++N++KLWSLVSD TYE YK + +GKAPVID ++ GYFK+LGKG+LPKVPVIVKA+FFSR+AEE+IK+VGGAC
Sbjct:    1 MSKIKAKKTRKLRGHVSHGMGRVGKHRKHPGGRGNAGGEHHHRINFNKYHPGYFGKIGMPHYHLRRNPYYCPTINLDKLWSLVSDATYEKYKNSKDGKAPVIDCVRKGYFKVLGKGILPKVPVIVKARFFSRRAEERIKAVGGAC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. TrEMBL
Match: A0A068WCE3 (Large subunit ribosomal protein L27Ae OS=Echinococcus granulosus OX=6210 GN=EgrG_001015500 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.033e-60
Identity = 111/145 (76.55%), Postives = 133/145 (91.72%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSKIK KKTRKLRGHVSHG GRVGKHRKHPGGRGNAGG+HHHRI+ +K+HPGYFGK+GM HYHL++N  +CP++N++KLWSLVSD TYE YK + +GKAPVID ++ GYFK+LGKG+LPKVPVIVKA+FFSR+AEE+IK+VGGAC
Sbjct:    1 MSKIKAKKTRKLRGHVSHGMGRVGKHRKHPGGRGNAGGEHHHRINFNKYHPGYFGKIGMPHYHLKRNPYYCPTINLDKLWSLVSDATYEKYKNSKDGKAPVIDCVRKGYFKVLGKGILPKVPVIVKARFFSRRAEERIKAVGGAC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. TrEMBL
Match: A0A0R3U1D5 (Ribosomal_L18e/L15P domain-containing protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS167 PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 6.458e-60
Identity = 111/145 (76.55%), Postives = 133/145 (91.72%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSK K KKTRKLRGHVSHG GRVGKHRKHPGGRGNAGG+HHHRI+ DK+HPGYFGK+GM HYHL++N  +CP++N++KLWSLVSD TYE YK++ +GKAPVID ++ GYFK+LGKGVLPK+PVIVKA+FFSR+AEE+IK+VGGAC
Sbjct:    1 MSKSKPKKTRKLRGHVSHGMGRVGKHRKHPGGRGNAGGEHHHRINFDKYHPGYFGKIGMPHYHLKRNPYYCPTINLDKLWSLVSDATYEKYKKSTDGKAPVIDCVRKGYFKVLGKGVLPKIPVIVKARFFSRRAEERIKAVGGAC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Cavefish
Match: RPL27A (ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329])

HSP 1 Score: 166.392 bits (420), Expect = 5.624e-54
Identity = 74/107 (69.16%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:  127 QHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
             HHHRI+ DK+HPGYFGKVGMRHYHL++N  FCP++N++KLW+LVS++T   + +  +G APVID+++AGYFK+LGKG LPK PVIVKAKFFSR+AEEKIK VGGAC
Sbjct:    1 MHHHRINFDKYHPGYFGKVGMRHYHLKRNTVFCPTINLDKLWTLVSEQTRVNHAKKLDGPAPVIDVVRAGYFKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGAC 107
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Yeast
Match: RPL28 (Ribosomal 60S subunit protein L28; homologous to mammalian ribosomal protein L27A and bacterial L15; may have peptidyl transferase activity; can mutate to cycloheximide resistance [Source:SGD;Acc:S000003071])

HSP 1 Score: 135.576 bits (340), Expect = 3.968e-42
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:  118 AGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLV-SDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            AGGQHHHRI+MDK+HPGYFGKVGMR++H ++   + P LN++KLW+L+  DK  +  K  ++  APVID L AGY K+LGKG +P VPVIVKA+F S+ AEEKI++ GG  
Sbjct:   35 AGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVV 145
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Yeast
Match: YGL102C_mRNA (Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential RPL28 gene encoding a large subunit ribosomal protein [Source:SGD;Acc:S000003070])

HSP 1 Score: 55.4546 bits (132), Expect = 3.913e-11
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = -1 
Query:   67 STHGFNLFFCLS*KEFRLDDNWNFWQNSFTKQFKVASF*KIDYWXXXXXXXXXXXXXXV-TD*AP*LFNV*RWTKCSIFS*MIMPHTNFTEVTRMEFIHMNSMMMLTTCITTTSRMLPVFTNSTMT 441
            +T   + FF     E   DDNWN W ++ T+   V     ++ WS      F   VSLV  D  P    V  W        + + HTN TE+T M FIH+NS++MLTT  T+T+ +L V T++T T
Sbjct:   10 TTSSSDFFFSQLGDESSFDDNWNIWNSTLTQDLTVTGCQSVNNWSSFLRSRFQVLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLTDTTFT 135
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Nematostella
Match: EDO47596 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RLF6])

HSP 1 Score: 170.629 bits (431), Expect = 1.071e-55
Identity = 77/111 (69.37%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:  115 NAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            NAGGQHHHRI+ DK+HPGYFGKVGMRH+HL +N    PS+N++K+WSLVS++T + YK   +G  PVID++KAGY+K+LGKG+LPK PVIVKAKFFSR+AE+KIK+VGGAC
Sbjct:   20 NAGGQHHHRINFDKYHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVIDVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGAC 130
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Medaka
Match: RPL27A (ribosomal protein L27a [Source:NCBI gene;Acc:101160900])

HSP 1 Score: 177.563 bits (449), Expect = 7.793e-58
Identity = 79/111 (71.17%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:  115 NAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            NAGG HHHRI+ DK+HPGYFGKVGMRHYHL++N T+CP++N++KLW+LVS++T   Y +  +G APVID ++AGY+K+LGKG LPK PVIVKAKFFSRQAEEKIK+VGGAC
Sbjct:   34 NAGGLHHHRINFDKYHPGYFGKVGMRHYHLKRNTTYCPTINLDKLWTLVSEQTRVNYGKKPDGPAPVIDAVRAGYYKVLGKGKLPKQPVIVKAKFFSRQAEEKIKAVGGAC 144
[Close]
BLAST of 60S ribosomal protein L27a vs. Ensembl Medaka
Match: RPL27A (ribosomal protein L27a [Source:NCBI gene;Acc:101160900])

HSP 1 Score: 153.295 bits (386), Expect = 1.502e-48
Identity = 68/96 (70.83%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:  160 HPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            HPGYFGKVGMRHYHL++N T+CP++N++KLW+LVS++T   Y +  +G APVID ++AGY+K+LGKG LPK PVIVKAKFFSRQAEEKIK+VGGAC
Sbjct:   25 HPGYFGKVGMRHYHLKRNTTYCPTINLDKLWTLVSEQTRVNYGKKPDGPAPVIDAVRAGYYKVLGKGKLPKQPVIVKAKFFSRQAEEKIKAVGGAC 120
[Close]
BLAST of 60S ribosomal protein L27a vs. Planmine SMEST
Match: SMESG000005086.1 (SMESG000005086.1)

HSP 1 Score: 243.432 bits (620), Expect = 4.978e-84
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSKIKVKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC
Sbjct:    1 MSKIKVKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 145
[Close]
BLAST of 60S ribosomal protein L27a vs. Planmine SMEST
Match: SMESG000034631.1 (SMESG000034631.1)

HSP 1 Score: 225.713 bits (574), Expect = 5.868e-77
Identity = 135/145 (93.10%), Postives = 141/145 (97.24%), Query Frame = 1 
Query:   13 MSKIKVKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHMDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAPVIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 447
            MSKIKVKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRIH DKFHPGYFGKVGMRHYHLRKNRTFCPS+NIEK+WSLVSDKTY+TYK++ EGKAPVID LKAG FK+LGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC
Sbjct:    1 MSKIKVKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSVNIEKIWSLVSDKTYDTYKDHPEGKAPVIDCLKAGIFKVLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC 145
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L27a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPL27A2.672e-5672.34ribosomal protein L27a [Source:HGNC Symbol;Acc:HGN... [more]
RPL27A9.333e-4064.37ribosomal protein L27a [Source:HGNC Symbol;Acc:HGN... [more]
RPL27A9.333e-4064.37ribosomal protein L27a [Source:HGNC Symbol;Acc:HGN... [more]
RPL27A9.333e-4064.37ribosomal protein L27a [Source:HGNC Symbol;Acc:HGN... [more]
RPL27A9.333e-4064.37ribosomal protein L27a [Source:HGNC Symbol;Acc:HGN... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Y37E3.86.733e-4969.29pep chromosome:WBcel235:I:2069681:2070607:-1 gene:... [more]
Y37E3.83.918e-3157.47pep chromosome:WBcel235:I:2069683:2070209:-1 gene:... [more]
Y37E3.83.918e-3157.47pep chromosome:WBcel235:I:2069683:2070574:-1 gene:... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RpL27A2.939e-4968.28gene:FBgn0285948 transcript:FBtr0345285[more]
RpL27A2.939e-4968.28gene:FBgn0285948 transcript:FBtr0077452[more]
RpL27A2.939e-4968.28gene:FBgn0285948 transcript:FBtr0335136[more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 60S ribosomal protein L27a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl27a5.554e-5875.18ribosomal protein L27a [Source:NCBI gene;Acc:10017... [more]
rpl27a5.559e-5875.18ribosomal protein L27a [Source:NCBI gene;Acc:10017... [more]
rpl27a6.825e-5875.18ribosomal protein L27a [Source:NCBI gene;Acc:10017... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rpl27a2.003e-5672.34ribosomal protein L27A [Source:MGI Symbol;Acc:MGI:... [more]
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BLAST of 60S ribosomal protein L27a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P47830|RL27A_XENLA7.328e-5875.8960S ribosomal protein L27a OS=Xenopus laevis OX=83... [more]
sp|Q56K03|RL27A_BOVIN7.030e-5672.3460S ribosomal protein L27a OS=Bos taurus OX=9913 G... [more]
sp|P18445|RL27A_RAT1.089e-5572.3460S ribosomal protein L27a OS=Rattus norvegicus OX... [more]
sp|Q5REY2|RL27A_PONAB1.283e-5572.3460S ribosomal protein L27a OS=Pongo abelii OX=9601... [more]
sp|P46776|RL27A_HUMAN1.283e-5572.3460S ribosomal protein L27a OS=Homo sapiens OX=9606... [more]
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BLAST of 60S ribosomal protein L27a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
D3PHZ97.487e-6279.3160S ribosomal protein L27a OS=Lepeophtheirus salmo... [more]
A0A4S2LM241.891e-6182.07Ribosomal_L18e/L15P domain-containing protein OS=O... [more]
A0A068YJK89.502e-6177.24Large subunit ribosomal protein L27Ae OS=Echinococ... [more]
A0A068WCE34.033e-6076.55Large subunit ribosomal protein L27Ae OS=Echinococ... [more]
A0A0R3U1D56.458e-6076.55Ribosomal_L18e/L15P domain-containing protein OS=M... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RPL27A5.624e-5469.16ribosomal protein L27a [Source:HGNC Symbol;Acc:HGN... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 60S ribosomal protein L27a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL283.968e-4258.56Ribosomal 60S subunit protein L28; homologous to m... [more]
YGL102C_mRNA3.913e-1136.51Dubious open reading frame unlikely to encode a fu... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO475961.071e-5569.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 60S ribosomal protein L27a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RPL27A7.793e-5871.17ribosomal protein L27a [Source:NCBI gene;Acc:10116... [more]
RPL27A1.502e-4870.83ribosomal protein L27a [Source:NCBI gene;Acc:10116... [more]
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BLAST of 60S ribosomal protein L27a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000005086.14.978e-84100.00SMESG000005086.1[more]
SMESG000034631.15.868e-7793.10SMESG000034631.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004808 ID=SMED30004808|Name=60S ribosomal protein L27a|organism=Schmidtea mediterranea sexual|type=transcript|length=447bp
TTTTAACGTGAAATGTCCAAAATCAAAGTGAAGAAGACCAGGAAATTGAG
AGGACATGTAAGCCACGGTCATGGTAGAGTTGGTAAACACAGGAAGCATC
CTGGAGGTCGTGGTAATGCAGGTGGTCAACATCATCATAGAATTCATATG
GATAAATTCCATCCTGGTTACTTCGGTAAAGTTGGTATGAGGCATTATCA
TTTAAGAAAAAATAGAACATTTTGTCCATCTCTAAACATTGAAAAGTTAT
GGAGCTTAGTCAGTGACAAGACTTACGAAACTTACAAAGAAAATGCTGAA
GGTAAAGCTCCAGTAATCGATCTTTTAAAAGCTGGCTACTTTAAATTGCT
TGGTAAAGGAGTTTTGCCAAAAGTTCCAGTTATCGTCAAGGCGAAATTCT
TTTCAAGACAAGCAGAAGAAAAGATTAAATCCGTGGGTGGAGCATGC
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protein sequence of SMED30004808-orf-1

>SMED30004808-orf-1 ID=SMED30004808-orf-1|Name=SMED30004808-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=145bp
MSKIKVKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRIHMDKFH
PGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSLVSDKTYETYKENAEGKAP
VIDLLKAGYFKLLGKGVLPKVPVIVKAKFFSRQAEEKIKSVGGAC
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036227L18e/L15P_sf
IPR021131Ribosomal_L18e/L15P
IPR001196Ribosomal_L15_CS
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
GO:0030529intracellular ribonucleoprotein complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 29..145
e-value: 1.2E-22
score: 81.0
NoneNo IPR availableGENE3DG3DSA:3.100.10.10coord: 59..145
e-value: 7.0E-38
score: 130.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR1172160S RIBOSOMAL PROTEIN L27Acoord: 5..145
NoneNo IPR availablePANTHERPTHR11721:SF1360S RIBOSOMAL PROTEIN L27Acoord: 5..145
IPR001196Ribosomal protein L15, conserved sitePROSITEPS00475RIBOSOMAL_L15coord: 111..142
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILYSSF52080Ribosomal proteins L15p and L18ecoord: 7..145