Glutamate receptor subunit 3

Overview


Name	Glutamate receptor subunit 3
Smed ID	SMED30004778
Length (bp)	374

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004778

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
oocyte	SMED30004778	h1SMcG0012782	Contig12736	newmark_ests	PMID:28434803 Rouhana et al., 2017
oocyte	SMED30004778	h1SMcG0012782	Contig12736	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
vitelline gland	SMED30004778	h1SMcG0012782	Contig12736	newmark_ests	PMID:28434803 Rouhana et al., 2017
vitelline gland	SMED30004778	h1SMcG0012782	Contig12736	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:HGNC Symbol;Acc:HGNC:4572])

HSP 1 Score: 56.6102 bits (135), Expect = 6.967e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  355 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 471

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:HGNC Symbol;Acc:HGNC:4572])

HSP 1 Score: 56.6102 bits (135), Expect = 7.733e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:HGNC Symbol;Acc:HGNC:4572])

HSP 1 Score: 56.6102 bits (135), Expect = 8.002e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  355 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 471

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:HGNC Symbol;Acc:HGNC:4572])

HSP 1 Score: 56.6102 bits (135), Expect = 8.002e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  355 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 471

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:HGNC Symbol;Acc:HGNC:4572])

HSP 1 Score: 56.6102 bits (135), Expect = 8.117e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Celegans
Match: glr-3 (GLutamate Receptor family (AMPA) [Source:UniProtKB/TrEMBL;Acc:Q21415])

HSP 1 Score: 50.8322 bits (120), Expect = 2.698e-8
Identity = 32/111 (28.83%), Postives = 54/111 (48.65%), Query Frame = 3

Query:   27 SSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIM 359
            S K + + + + I   +  PF      +G Y      G+   L+H +A  ++F   + +  D  YG+K E+   +SG VGE+Q  +A  +    T +  R+EV DF+ P M
Sbjct:  393 SEKLTLEGKHLKISVYLEAPFVMI-TSNGSY-----EGYCIDLLHKIANILKFTYTIQKVRDNAYGSK-ESNGKWSGMVGELQRGDADLAVASLTISYGRSEVIDFTVPYM 496

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Fly
Match: Ekar (gene:FBgn0039916 transcript:FBtr0110906)

HSP 1 Score: 44.2838 bits (103), Expect = 6.871e-6
Identity = 25/105 (23.81%), Postives = 47/105 (44.76%), Query Frame = 3

Query:   48 NQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            N T+ + T++  P+            E   GF   ++  +++E+ F  ++    D++YGAK      ++G V ++    A  + G  T    R  V DF+ P M+
Sbjct:  402 NVTLVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMN 506

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Fly
Match: Ekar (gene:FBgn0039916 transcript:FBtr0089102)

HSP 1 Score: 44.2838 bits (103), Expect = 6.952e-6
Identity = 25/105 (23.81%), Postives = 47/105 (44.76%), Query Frame = 3

Query:   48 NQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            N T+ + T++  P+            E   GF   ++  +++E+ F  ++    D++YGAK      ++G V ++    A  + G  T    R  V DF+ P M+
Sbjct:  402 NVTLVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMN 506

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
Match: gria4b (glutamate receptor, ionotropic, AMPA 4b [Source:ZFIN;Acc:ZDB-GENE-030131-8013])

HSP 1 Score: 55.0694 bits (131), Expect = 1.753e-9
Identity = 33/112 (29.46%), Postives = 55/112 (49.11%), Query Frame = 3

Query:   39 SFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
              +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK + FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  411 GMENRTVIVTTIMEGPYVMLKKNWEMYEGN---EQYEGYCVDLASEIAKHIGFKYKISIVPDGKYGARDPETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 519

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
Match: gria2b (glutamate receptor, ionotropic, AMPA 2b [Source:ZFIN;Acc:ZDB-GENE-020125-4])

HSP 1 Score: 55.0694 bits (131), Expect = 1.853e-9
Identity = 36/120 (30.00%), Postives = 55/120 (45.83%), Query Frame = 3

Query:   21 TKSSKF-----SFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            TKS  F       +N+T+ + T++  P+   K     ++  E   G+   L   +AK   FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  396 TKSDLFPNDTMGLENKTVIVTTILEAPYVMLKKNADLFMDNERYEGYCVDLAAEIAKHCGFKYQLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMS 515

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
Match: gria4b (glutamate receptor, ionotropic, AMPA 4b [Source:ZFIN;Acc:ZDB-GENE-030131-8013])

HSP 1 Score: 54.6842 bits (130), Expect = 2.007e-9
Identity = 33/112 (29.46%), Postives = 55/112 (49.11%), Query Frame = 3

Query:   39 SFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
              +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK + FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  411 GMENRTVIVTTIMEGPYVMLKKNWEMYEGN---EQYEGYCVDLASEIAKHIGFKYKISIVPDGKYGARDPETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 519

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
Match: gria4b (glutamate receptor, ionotropic, AMPA 4b [Source:ZFIN;Acc:ZDB-GENE-030131-8013])

HSP 1 Score: 54.6842 bits (130), Expect = 2.007e-9
Identity = 33/112 (29.46%), Postives = 55/112 (49.11%), Query Frame = 3

Query:   39 SFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
              +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK + FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  411 GMENRTVIVTTIMEGPYVMLKKNWEMYEGN---EQYEGYCVDLASEIAKHIGFKYKISIVPDGKYGARDPETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 519

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
Match: gria2b (glutamate receptor, ionotropic, AMPA 2b [Source:ZFIN;Acc:ZDB-GENE-020125-4])

HSP 1 Score: 54.6842 bits (130), Expect = 2.022e-9
Identity = 36/120 (30.00%), Postives = 55/120 (45.83%), Query Frame = 3

Query:   21 TKSSKF-----SFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            TKS  F       +N+T+ + T++  P+   K     ++  E   G+   L   +AK   FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  396 TKSDLFPNDTMGLENKTVIVTTILEAPYVMLKKNADLFMDNERYEGYCVDLAAEIAKHCGFKYQLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMS 515

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
Match: GRIA4 (glutamate ionotropic receptor AMPA type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4574])

HSP 1 Score: 57.3806 bits (137), Expect = 4.019e-10
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 3

Query:   24 KSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLEN---MSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            K+     +N+T+ + T++  P+  YK      LLE      G+   L + +AK +  K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  409 KNDSSGIENRTVIVTTILEAPYVMYK--KNHELLEGNDKFEGYCVDLAYEIAKHIGIKYKIAIVPDGKYGARDSETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 522

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
Match: GRIA4 (glutamate ionotropic receptor AMPA type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4574])

HSP 1 Score: 57.3806 bits (137), Expect = 4.278e-10
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 3

Query:   24 KSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLEN---MSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            K+     +N+T+ + T++  P+  YK      LLE      G+   L + +AK +  K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  409 KNDSSGIENRTVIVTTILEAPYVMYK--KNHELLEGNDKFEGYCVDLAYEIAKHIGIKYKIAIVPDGKYGARDSETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 522

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
Match: GRIA4 (glutamate ionotropic receptor AMPA type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4574])

HSP 1 Score: 56.9954 bits (136), Expect = 4.482e-10
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 3

Query:   24 KSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLEN---MSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            K+     +N+T+ + T++  P+  YK      LLE      G+   L + +AK +  K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  429 KNDSSGIENRTVIVTTILEAPYVMYK--KNHELLEGNDKFEGYCVDLAYEIAKHIGIKYKIAIVPDGKYGARDSETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 542

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
Match: GRIA4 (glutamate ionotropic receptor AMPA type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4574])

HSP 1 Score: 56.9954 bits (136), Expect = 4.730e-10
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 3

Query:   24 KSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLEN---MSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            K+     +N+T+ + T++  P+  YK      LLE      G+   L + +AK +  K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  396 KNDSSGIENRTVIVTTILEAPYVMYK--KNHELLEGNDKFEGYCVDLAYEIAKHIGIKYKIAIVPDGKYGARDSETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 509

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
Match: GRIA4 (glutamate ionotropic receptor AMPA type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4574])

HSP 1 Score: 56.9954 bits (136), Expect = 4.924e-10
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 3

Query:   24 KSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLEN---MSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            K+     +N+T+ + T++  P+  YK      LLE      G+   L + +AK +  K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  406 KNDSSGIENRTVIVTTILEAPYVMYK--KNHELLEGNDKFEGYCVDLAYEIAKHIGIKYKIAIVPDGKYGARDSETKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMS 519

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
Match: Gria2 (glutamate receptor, ionotropic, AMPA2 (alpha 2) [Source:MGI Symbol;Acc:MGI:95809])

HSP 1 Score: 56.6102 bits (135), Expect = 5.309e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
Match: Gria2 (glutamate receptor, ionotropic, AMPA2 (alpha 2) [Source:MGI Symbol;Acc:MGI:95809])

HSP 1 Score: 56.6102 bits (135), Expect = 5.405e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
Match: Gria2 (glutamate receptor, ionotropic, AMPA2 (alpha 2) [Source:MGI Symbol;Acc:MGI:95809])

HSP 1 Score: 56.6102 bits (135), Expect = 5.963e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
Match: Gria3 (glutamate receptor, ionotropic, AMPA3 (alpha 3) [Source:MGI Symbol;Acc:MGI:95810])

HSP 1 Score: 55.0694 bits (131), Expect = 1.649e-9
Identity = 35/112 (31.25%), Postives = 55/112 (49.11%), Query Frame = 3

Query:   39 SFQNQTIYICTLINVPFFNYKVP----DGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            S +N+TI + T++  P+  YK      +G    E   G+   L + +AK ++ K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  413 SSENRTIVVTTILESPYVMYKKNHEQLEGN---ERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMS 521

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
Match: Gria3 (glutamate receptor, ionotropic, AMPA3 (alpha 3) [Source:MGI Symbol;Acc:MGI:95810])

HSP 1 Score: 55.0694 bits (131), Expect = 1.787e-9
Identity = 35/112 (31.25%), Postives = 55/112 (49.11%), Query Frame = 3

Query:   39 SFQNQTIYICTLINVPFFNYKVP----DGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            S +N+TI + T++  P+  YK      +G    E   G+   L + +AK ++ K  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  413 SSENRTIVVTTILESPYVMYKKNHEQLEGN---ERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMS 521

[Close]

BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
Match: sp|Q5R4M0|GRIA2_PONAB (Glutamate receptor 2 OS=Pongo abelii OX=9601 GN=GRIA2 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.117e-9
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIAGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
Match: sp|P19491|GRIA2_RAT (Glutamate receptor 2 OS=Rattus norvegicus OX=10116 GN=Gria2 PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 3.642e-9
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
Match: sp|P42262|GRIA2_HUMAN (Glutamate receptor 2 OS=Homo sapiens OX=9606 GN=GRIA2 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 3.714e-9
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
Match: sp|P23819|GRIA2_MOUSE (Glutamate receptor 2 OS=Mus musculus OX=10090 GN=Gria2 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 3.750e-9
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
Match: sp|Q38PU7|GRIA2_MACFA (Glutamate receptor 2 OS=Macaca fascicularis OX=9541 GN=GRIA2 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 3.786e-9
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:    9 VPSTTKSSKFSFQNQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            +PS   +S    +N+T+ + T++  P+     N+++ +G    E   G+   L   +AK   FK  +    D +YGA+  +  I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  402 LPSGNDTS--GLENKTVVVTTILESPYVMMKKNHEMLEGN---ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 518

[Close]

BLAST of Glutamate receptor subunit 3 vs. TrEMBL
Match: A0A1I8HZU0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.434e-12
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 3

Query:   36 FSFQNQTIYICTLINVPFFNYKVPDGPY-LLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQ-------IRNATFSAGLFTFNVQRNEVADFSHPIMSDPT 371
              F+N+TI IC            P+ P       SGF   +++ LA++M F+ +  +  D ++GA + N SIFSGCVGE+Q       ++  T +AG FT    R  V +FS P+M + T
Sbjct: 1122 LGFKNETITICA-----------PEAPADSSAKFSGFTASVLNMLAEKMDFRFIAKRSDDNKWGAPLPNSSIFSGCVGELQKGVAVSLLQLVTLAAGHFTMTAARQTVIEFSVPLMEEST 1230

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BLAST of Glutamate receptor subunit 3 vs. TrEMBL
Match: A0A158QW73 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS9419 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.409e-10
Identity = 37/122 (30.33%), Postives = 63/122 (51.64%), Query Frame = 3

Query:   15 STTKSS-KFSFQNQTIYICTLINVPFFNYKVPDGPYLL---ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGA--KVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            S TKS  +   + QT+ + T+  +PF  YK P G       ++  GF   L++  A  ++F   V+  +D  YG   KV  + ++ G +G++Q R A  +  + T N++R  V DF+ P M+
Sbjct:  475 SKTKSEIQKELKGQTLRVATIEEIPFMMYKGPSGHVKSSDPKDWHGFCIDLLNECASALEFNYTVHPVADGNYGTATKVNGEVVWDGIIGQLQFRKADLAVAMLTINLERERVIDFTTPFMN 596

[Close]

BLAST of Glutamate receptor subunit 3 vs. TrEMBL
Match: A0A158R7M8 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS4082 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.026e-10
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 3

Query:   15 STTKSSKF-SFQNQTIYICTLINVPFFNYKVPDGPYLLEN---MSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAK--VENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            STT++  +   ++Q + + T+  +PF  YK P G     N     GF   L+   A  ++F   V+  +D  YG    V  Q ++ G +GE+Q R A  +  + T + +R  V DF+ P M+
Sbjct:  433 STTQAEIYKELKDQVLRVATIEEIPFMMYKGPAGERKSSNPQDWHGFCIDLLDECAAALEFNYTVHPVTDGNYGTAMIVNGQEVWDGIIGELQFRKADLAVAMLTISYERERVIDFTTPFMN 554

[Close]

BLAST of Glutamate receptor subunit 3 vs. TrEMBL
Match: A0A267FSX5 (PBPe domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017883g2 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.339e-10
Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 3

Query:   36 FSFQNQTIYICTLINVPFFNYK--VPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMSD 365
              F+N+TI IC+   +PF  Y+   P+   ++    G +  ++  LA  + F+  V  P D Q+G     +S FSGCVGEVQ    +     FT    R+ V DFS P+  +
Sbjct:  150 LGFKNETIRICSTEILPFTIYRQTFPNKTVIV---GGMLKDVLDILAARLDFRYSVKVPDDGQWGGPQAGKSYFSGCVGEVQRGIVSIGGSTFTKTAIRDSVVDFSTPLFQE 258

[Close]

BLAST of Glutamate receptor subunit 3 vs. TrEMBL
Match: A0A267H134 (PBPe domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017883g1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.657e-10
Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 3

Query:   36 FSFQNQTIYICTLINVPFFNYK--VPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPI 356
              F+N+TI IC+   +PF  Y+   P+   ++    G +  ++  LA  + F+  V  P D Q+G     +S FSGCVGEVQ    +     FT    R+ V DFS P+
Sbjct:  348 LGFKNETIRICSTEILPFTIYRQTFPNKTVIV---GGMLKDVLDILAARLDFRYSVKVPDDGQWGGPQAGKSYFSGCVGEVQRGIVSIGGSTFTKTAIRDSVVDFSTPL 453

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:NCBI gene;Acc:103039282])

HSP 1 Score: 55.4546 bits (132), Expect = 9.250e-10
Identity = 36/122 (29.51%), Postives = 56/122 (45.90%), Query Frame = 3

Query:   15 STTKSSKF-----SFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            + TKS  F       +N+T+ + T++  P+   K     ++  E   G+   L   +AK   FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  398 AVTKSDLFPNDTMGLENKTVIVTTILEAPYVMLKKNADLFMDNERYEGYCVDLAAEIAKHCGFKYRLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMS 519

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:NCBI gene;Acc:103039282])

HSP 1 Score: 55.4546 bits (132), Expect = 9.589e-10
Identity = 36/122 (29.51%), Postives = 56/122 (45.90%), Query Frame = 3

Query:   15 STTKSSKF-----SFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            + TKS  F       +N+T+ + T++  P+   K     ++  E   G+   L   +AK   FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  398 AVTKSDLFPNDTMGLENKTVIVTTILEAPYVMLKKNADLFMDNERYEGYCVDLAAEIAKHCGFKYRLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMS 519

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
Match: GRIA2 (glutamate ionotropic receptor AMPA type subunit 2 [Source:NCBI gene;Acc:103039282])

HSP 1 Score: 55.4546 bits (132), Expect = 1.002e-9
Identity = 36/122 (29.51%), Postives = 56/122 (45.90%), Query Frame = 3

Query:   15 STTKSSKF-----SFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            + TKS  F       +N+T+ + T++  P+   K     ++  E   G+   L   +AK   FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  348 AVTKSDLFPNDTMGLENKTVIVTTILEAPYVMLKKNADLFMDNERYEGYCVDLAAEIAKHCGFKYRLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMS 469

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
Match: gria1b (glutamate receptor 1 [Source:NCBI gene;Acc:103031063])

HSP 1 Score: 53.5286 bits (127), Expect = 5.139e-9
Identity = 32/115 (27.83%), Postives = 55/115 (47.83%), Query Frame = 3

Query:   21 TKSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            T +  F FQN+T  + T++  P+   K     ++  +   G+  +L   +AK + +   +    D +YGA+     +++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  401 TLNETFGFQNRTYVVTTILESPYVMLKKNHEQFVGNDKYEGYCVELAAEIAKHVGYSYRLELVGDGKYGARDAETKMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMS 515

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
Match: gria1b (glutamate receptor 1 [Source:NCBI gene;Acc:103031063])

HSP 1 Score: 53.5286 bits (127), Expect = 5.552e-9
Identity = 32/115 (27.83%), Postives = 55/115 (47.83%), Query Frame = 3

Query:   21 TKSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            T +  F FQN+T  + T++  P+   K     ++  +   G+  +L   +AK + +   +    D +YGA+     +++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  401 TLNETFGFQNRTYVVTTILESPYVMLKKNHEQFVGNDKYEGYCVELAAEIAKHVGYSYRLELVGDGKYGARDAETKMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMS 515

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000889.1 (pep scaffold:Pmarinus_7.0:GL476542:184998:205948:1 gene:ENSPMAG00000000813.1 transcript:ENSPMAT00000000889.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 6.147e-9
Identity = 25/80 (31.25%), Postives = 45/80 (56.25%), Query Frame = 3

Query:  114 PYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHP 353
            PY+     GF   ++  L+  ++F   +Y   + ++G K+  Q +++G VGEV+ + A  + G  T N +R++V DFS P
Sbjct:   81 PYVKRCCKGFCIDILRKLSTTVRFTYDLYLVVNGKHGKKI--QGVWNGMVGEVEQKRAHMAVGSLTINEERSQVVDFSVP 158

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010716.1 (pep scaffold:Pmarinus_7.0:GL476465:413535:454465:1 gene:ENSPMAG00000009705.1 transcript:ENSPMAT00000010716.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 2.878e-8
Identity = 25/80 (31.25%), Postives = 46/80 (57.50%), Query Frame = 3

Query:  114 PYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHP 353
            PY+ +   GF   ++  L+K ++F   +Y  ++ ++G+K+    +++G +GEV    A  + G  T N +R+EV DFS P
Sbjct:  390 PYVKKCCKGFCIDILKKLSKTVKFTYDLYLVTNGKHGSKI--NGVWNGMIGEVVNMRAHMAVGSLTINEERSEVVDFSVP 467

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Sea Lamprey
Match: gria1b (glutamate receptor, ionotropic, AMPA 1b [Source:ZFIN;Acc:ZDB-GENE-020125-2])

HSP 1 Score: 48.521 bits (114), Expect = 4.815e-8
Identity = 31/109 (28.44%), Postives = 54/109 (49.54%), Query Frame = 3

Query:   48 NQTIYICTLINVPFF----NYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
            N+T+ + T+++ P+F    N++  +G    +   G+   L   +A   QF+       D  YGA+  +  +++G VGE+    A  +    T ++ R EV DFS P MS
Sbjct:   30 NRTVIVTTILDAPYFMLKKNHEQFEGN---DKYEGYCVDLGQEIAIHEQFEYKWSVVPDGAYGARNPDTKVWNGMVGELVYGRADIAIAPLTISLVREEVIDFSKPFMS 135

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Nematostella
Match: EDO46596 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPM2])

HSP 1 Score: 48.9062 bits (115), Expect = 6.908e-8
Identity = 25/107 (23.36%), Postives = 49/107 (45.79%), Query Frame = 3

Query:   42 FQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
             +N+TI +  ++  PF   K   G    +   G    ++  + + + F   +Y   D Q+G++    + ++G +GE+    A  S    T + +   V DF+HP M+
Sbjct:  481 LKNKTIDVVAVLAPPFVMKKTGSGSNGTQEYEGLSIDMLEEMKQSLGFSYKLYLAPDGQFGSRSRTSNKWNGIMGEIIDDKAKLSIAPLTISSEGQTVVDFTHPYMT 587

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Nematostella
Match: EDO41291 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4J5])

HSP 1 Score: 48.521 bits (114), Expect = 1.015e-7
Identity = 27/102 (26.47%), Postives = 49/102 (48.04%), Query Frame = 3

Query:   87 FFNYKVPDGPYLL-----------ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIM 359
            +F + + D P+++           +   GF   L+  L++++ F+  +    +  YG+KVE Q  + G +GE+    A  + G  T   +R EV DFS P +
Sbjct:    1 YFYFYLQDEPFMMIKPNASLLKGNDRYRGFSKDLMELLSRKLNFRYEICISKESSYGSKVEGQ--WQGLIGELVREEADIALGPITITAEREEVIDFSKPFL 100

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
Match: gria2b (glutamate ionotropic receptor AMPA type subunit 2 [Source:NCBI gene;Acc:101168274])

HSP 1 Score: 53.9138 bits (128), Expect = 3.660e-9
Identity = 32/109 (29.36%), Postives = 51/109 (46.79%), Query Frame = 3

Query:   39 SFQNQTIYICTLINVPFFNYKVPDGPYLL-ENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMS 362
              +N+T+ + T++  P+   K     ++  E   G+   L   +AK   FK  +    D +YGA+     I++G VGE+    A  +    T  + R EV DFS P MS
Sbjct:  407 GMENKTVIVTTILEAPYVMLKKNADLFVDNERYEGYCVDLAAEIAKHCGFKYQLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMS 515

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
Match: grin2aa (glutamate ionotropic receptor NMDA type subunit 2A [Source:NCBI gene;Acc:101161811])

HSP 1 Score: 51.9878 bits (123), Expect = 1.556e-8
Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 3

Query:  111 GPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHP 353
            G Y+ +   GF   ++  +AK ++F   +Y  ++ ++G K+ N  +++G VGEV  + A  + G  T N +R+EV DFS P
Sbjct:  468 GTYIKKCCKGFCIDILKKIAKYVKFTYDLYLVTNGKHGKKINN--VWNGMVGEVVYKKAVMAVGSLTINEERSEVIDFSVP 546

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
Match: ENSORLT00000041032.1 (glutamate ionotropic receptor NMDA type subunit 2B [Source:NCBI gene;Acc:101173552])

HSP 1 Score: 51.6026 bits (122), Expect = 2.089e-8
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 3

Query:  111 GPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIM 359
            G Y+     GF   ++  +AK+++F   +Y  ++ ++G KV     ++G VGEV ++NA  + G  T N +R+EV DFS P +
Sbjct:  524 GIYIKRCCKGFCIDILKKIAKQVKFTYDLYLVTNGKHGKKV--NGTWNGMVGEVVLKNAHMAVGSLTINEERSEVIDFSVPFI 604

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
Match: ENSORLT00000018671.2 (glutamate ionotropic receptor NMDA type subunit 2B [Source:NCBI gene;Acc:101173552])

HSP 1 Score: 51.6026 bits (122), Expect = 2.106e-8
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 3

Query:  111 GPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIM 359
            G Y+     GF   ++  +AK+++F   +Y  ++ ++G KV     ++G VGEV ++NA  + G  T N +R+EV DFS P +
Sbjct:  507 GIYIKRCCKGFCIDILKKIAKQVKFTYDLYLVTNGKHGKKV--NGTWNGMVGEVVLKNAHMAVGSLTINEERSEVIDFSVPFI 587

[Close]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
Match: ENSORLT00000040618.1 (glutamate receptor ionotropic, NMDA 2A [Source:NCBI gene;Acc:101164378])

HSP 1 Score: 51.6026 bits (122), Expect = 2.167e-8
Identity = 26/81 (32.10%), Postives = 47/81 (58.02%), Query Frame = 3

Query:  111 GPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHP 353
            G Y+ +   GF   ++  +A+ ++F   +Y  ++ ++G K+ N  +++G VGEV  + A  + G  T N +R+EV DFS P
Sbjct:  546 GAYIKQCCKGFCIDILKKIARNVKFTYDLYLVTNGKHGKKINN--MWNGMVGEVVYKKAVMAVGSLTINEERSEVIDFSVP 624

[Close]

BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST
Match: SMESG000080411.1 (SMESG000080411.1)

HSP 1 Score: 138.272 bits (347), Expect = 8.893e-40
Identity = 58/116 (50.00%), Postives = 89/116 (76.72%), Query Frame = 3

Query:   27 SSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMSDPTV 374
            S K+SFQN+T+ IC L  +PF         + ++N+SGF+ K+I +L+ +++F P VYQP D QYG K+EN++I++GCVGEVQ++NA+F+AG FTFN +RN+V D+S+P+M+DP +
Sbjct:  125 SKKYSFQNKTLSICALEYIPFLKIINKSRSFNMDNISGFLVKIIKHLSLKLEFLPDVYQPHDGQYGVKIENKTIYTGCVGEVQVKNASFAAGCFTFNEERNQVVDYSYPLMTDPQI 240

[Close]

BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST
Match: SMESG000080367.1 (SMESG000080367.1)

HSP 1 Score: 124.79 bits (312), Expect = 4.654e-34
Identity = 57/116 (49.14%), Postives = 85/116 (73.28%), Query Frame = 3

Query:   27 SSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMSDPTV 374
            ++K+SF+N+TI IC++  VPFF       PY  +N+SGF+ K+I +LAKE QF+  +Y+P D Q G +++N++IFSGCVGEVQ +NA+F+A  FTFN +R  V D+S+P MS+  +
Sbjct:  352 TTKYSFRNKTIKICSMEYVPFFTKYNKSLPYSKDNISGFLAKIIKHLAKEFQFQFEIYEPLDGQSGVRIKNKTIFSGCVGEVQTKNASFAASTFTFNDERMTVIDYSYPFMSESQI 467

[Close]

BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST
Match: SMESG000073231.1 (SMESG000073231.1)

HSP 1 Score: 121.709 bits (304), Expect = 1.063e-33
Identity = 53/113 (46.90%), Postives = 79/113 (69.91%), Query Frame = 3

Query:   36 FSFQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMSDPTV 374
            + F N+T  +CT++  P+       GP  +EN+SGF T+++  L +++ F P +Y P D +YGAKVENQ++F+GCVG+VQ R A F+A  FT N +R +V DF++PIMSDP+V
Sbjct:  174 YDFLNKTTKVCTIVKNPYITKVNTTGPLSMENVSGFFTRILSSLGEKLNFSPSLYLPRDGRYGAKVENQTLFTGCVGDVQSRKALFAAASFTINDERMKVVDFTYPIMSDPSV 286

[Close]

BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST
Match: SMESG000073183.1 (SMESG000073183.1)

HSP 1 Score: 116.701 bits (291), Expect = 4.224e-32
Identity = 47/84 (55.95%), Postives = 70/84 (83.33%), Query Frame = 3

Query:  123 LENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMSDPTV 374
            +EN+SGF++K++ +L+K + F PV+YQP D QYG K+ N +++SGCVGE+Q +NA+F+AG FTFN +RN+V D+S+PI+SDP V
Sbjct:   10 IENISGFLSKVLKHLSKVLNFNPVIYQPVDGQYGVKLNNNTVYSGCVGELQTKNASFAAGSFTFNDERNQVVDYSYPILSDPLV 93

[Close]

BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST
Match: SMESG000073173.1 (SMESG000073173.1)

HSP 1 Score: 111.309 bits (277), Expect = 2.175e-29
Identity = 50/114 (43.86%), Postives = 76/114 (66.67%), Query Frame = 3

Query:   27 SSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITKLIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAGLFTFNVQRNEVADFSHPIMSDP 368
            S+ F+F N+TI ICT+ N PF   K   G + ++NMSGF+ K++ +L+K ++F+  +Y  +D  YG  +  Q  FSGCVG+VQ + A  +A +FTF   R+ V D+++PIMSDP
Sbjct:  278 SNPFNFSNKTIKICTIENSPFVTRKNKSGTFDIDNMSGFVIKILLHLSKTLEFRTSIYIAADGTYGGPIPKQQFFSGCVGDVQQKKAEMAASVFTFTSDRSSVVDYTYPIMSDP 391

The following BLAST results are available for this feature:

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
BLAST of Glutamate receptor subunit 3 vs. Ensembl Celegans
BLAST of Glutamate receptor subunit 3 vs. Ensembl Fly
BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
BLAST of Glutamate receptor subunit 3 vs. TrEMBL
BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
BLAST of Glutamate receptor subunit 3 vs. Ensembl Sea Lamprey
BLAST of Glutamate receptor subunit 3 vs. Ensembl Yeast
BLAST of Glutamate receptor subunit 3 vs. Ensembl Nematostella
BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST

BLAST of Glutamate receptor subunit 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GRIA2	6.967e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
GRIA2	7.733e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
GRIA2	8.002e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
GRIA2	8.002e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
GRIA2	8.117e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
glr-3	2.698e-8	28.83	GLutamate Receptor family (AMPA) [Source:UniProtK...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Ekar	6.871e-6	23.81	gene:FBgn0039916 transcript:FBtr0110906	[more]
Ekar	6.952e-6	23.81	gene:FBgn0039916 transcript:FBtr0089102	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gria4b	1.753e-9	29.46	glutamate receptor, ionotropic, AMPA 4b [Source:ZF...	[more]
gria2b	1.853e-9	30.00	glutamate receptor, ionotropic, AMPA 2b [Source:ZF...	[more]
gria4b	2.007e-9	29.46	glutamate receptor, ionotropic, AMPA 4b [Source:ZF...	[more]
gria4b	2.007e-9	29.46	glutamate receptor, ionotropic, AMPA 4b [Source:ZF...	[more]
gria2b	2.022e-9	30.00	glutamate receptor, ionotropic, AMPA 2b [Source:ZF...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GRIA4	4.019e-10	30.17	glutamate ionotropic receptor AMPA type subunit 4 ...	[more]
GRIA4	4.278e-10	30.17	glutamate ionotropic receptor AMPA type subunit 4 ...	[more]
GRIA4	4.482e-10	30.17	glutamate ionotropic receptor AMPA type subunit 4 ...	[more]
GRIA4	4.730e-10	30.17	glutamate ionotropic receptor AMPA type subunit 4 ...	[more]
GRIA4	4.924e-10	30.17	glutamate ionotropic receptor AMPA type subunit 4 ...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Gria2	5.309e-10	29.51	glutamate receptor, ionotropic, AMPA2 (alpha 2) [S...	[more]
Gria2	5.405e-10	29.51	glutamate receptor, ionotropic, AMPA2 (alpha 2) [S...	[more]
Gria2	5.963e-10	29.51	glutamate receptor, ionotropic, AMPA2 (alpha 2) [S...	[more]
Gria3	1.649e-9	31.25	glutamate receptor, ionotropic, AMPA3 (alpha 3) [S...	[more]
Gria3	1.787e-9	31.25	glutamate receptor, ionotropic, AMPA3 (alpha 3) [S...	[more]

BLAST of Glutamate receptor subunit 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q5R4M0\|GRIA2_PONAB	2.117e-9	29.51	Glutamate receptor 2 OS=Pongo abelii OX=9601 GN=GR...	[more]
sp\|P19491\|GRIA2_RAT	3.642e-9	29.51	Glutamate receptor 2 OS=Rattus norvegicus OX=10116...	[more]
sp\|P42262\|GRIA2_HUMAN	3.714e-9	29.51	Glutamate receptor 2 OS=Homo sapiens OX=9606 GN=GR...	[more]
sp\|P23819\|GRIA2_MOUSE	3.750e-9	29.51	Glutamate receptor 2 OS=Mus musculus OX=10090 GN=G...	[more]
sp\|Q38PU7\|GRIA2_MACFA	3.786e-9	29.51	Glutamate receptor 2 OS=Macaca fascicularis OX=954...	[more]

BLAST of Glutamate receptor subunit 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8HZU0	5.434e-12	34.17	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A158QW73	1.409e-10	30.33	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A158R7M8	9.026e-10	29.51	Uncharacterized protein OS=Taenia asiatica OX=6051...	[more]
A0A267FSX5	9.339e-10	33.04	PBPe domain-containing protein (Fragment) OS=Macro...	[more]
A0A267H134	9.657e-10	33.94	PBPe domain-containing protein (Fragment) OS=Macro...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GRIA2	9.250e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
GRIA2	9.589e-10	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
GRIA2	1.002e-9	29.51	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
gria1b	5.139e-9	27.83	glutamate receptor 1 [Source:NCBI gene;Acc:1030310...	[more]
gria1b	5.552e-9	27.83	glutamate receptor 1 [Source:NCBI gene;Acc:1030310...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSPMAT00000000889.1	6.147e-9	31.25	pep scaffold:Pmarinus_7.0:GL476542:184998:205948:1...	[more]
ENSPMAT00000010716.1	2.878e-8	31.25	pep scaffold:Pmarinus_7.0:GL476465:413535:454465:1...	[more]
gria1b	4.815e-8	28.44	glutamate receptor, ionotropic, AMPA 1b [Source:ZF...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Glutamate receptor subunit 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO46596	6.908e-8	23.36	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO41291	1.015e-7	26.47	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Glutamate receptor subunit 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gria2b	3.660e-9	29.36	glutamate ionotropic receptor AMPA type subunit 2 ...	[more]
grin2aa	1.556e-8	33.33	glutamate ionotropic receptor NMDA type subunit 2A...	[more]
ENSORLT00000041032.1	2.089e-8	33.73	glutamate ionotropic receptor NMDA type subunit 2B...	[more]
ENSORLT00000018671.2	2.106e-8	33.73	glutamate ionotropic receptor NMDA type subunit 2B...	[more]
ENSORLT00000040618.1	2.167e-8	32.10	glutamate receptor ionotropic, NMDA 2A [Source:NCB...	[more]

BLAST of Glutamate receptor subunit 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000080411.1	8.893e-40	50.00	SMESG000080411.1	[more]
SMESG000080367.1	4.654e-34	49.14	SMESG000080367.1	[more]
SMESG000073231.1	1.063e-33	46.90	SMESG000073231.1	[more]
SMESG000073183.1	4.224e-32	55.95	SMESG000073183.1	[more]
SMESG000073173.1	2.175e-29	43.86	SMESG000073173.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004778 ID=SMED30004778|Name=Glutamate receptor subunit 3|organism=Schmidtea mediterranea sexual|type=transcript|length=374bp
GCTTCCCAGTACCAAGTACCACAAAGAGTTCGAAGTTCAGTTTTCAAAAC
CAAACTATATACATTTGTACCTTAATTAATGTTCCATTTTTCAACTACAA
AGTTCCAGATGGTCCCTACCTTCTTGAAAACATGTCTGGATTCATTACAA
AACTTATTCACTATTTAGCTAAAGAAATGCAATTTAAGCCAGTGGTTTAT
CAGCCATCTGATAAACAATATGGTGCAAAAGTAGAAAACCAATCTATTTT
TAGTGGCTGTGTCGGTGAAGTTCAAATAAGGAACGCAACATTTTCAGCTG
GGCTATTCACATTTAATGTTCAGCGCAATGAGGTGGCAGATTTCAGTCAT
CCAATAATGTCTGACCCGACGGTG

protein sequence of SMED30004778-orf-1

>SMED30004778-orf-1 ID=SMED30004778-orf-1|Name=SMED30004778-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=124bp
FPVPSTTKSSKFSFQNQTIYICTLINVPFFNYKVPDGPYLLENMSGFITK
LIHYLAKEMQFKPVVYQPSDKQYGAKVENQSIFSGCVGEVQIRNATFSAG
LFTFNVQRNEVADFSHPIMSDPTV

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019594	Glu/Gly-bd

Vocabulary: **molecular function**
Term	Definition
GO:0004970	ionotropic glutamate receptor activity
GO:0005234	extracellular-glutamate-gated ion channel activity
GO:0004872	receptor activity
GO:0005216	ion channel activity

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane
GO:0030054	cell junction
GO:0045202	synapse
GO:0045211	postsynaptic membrane
GO:0005886	plasma membrane

Vocabulary: **biological process**
Term	Definition
GO:0034220	ion transmembrane transport
GO:0035235	ionotropic glutamate receptor signaling pathway
GO:0060079	excitatory postsynaptic potential
GO:0006810	transport
GO:0006811	ion transport

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	PFAM	PF10613	Lig_chan-Glu_bd	coord: 18..121 e-value: 4.4E-15 score: 55.9
None	No IPR available	GENE3D	G3DSA:3.40.190.10		coord: 11..124 e-value: 3.8E-19 score: 70.6
None	No IPR available	PANTHER	PTHR42643:SF13	IONOTROPIC RECEPTOR 40A-RELATED	coord: 8..121
None	No IPR available	PANTHER	PTHR42643	FAMILY NOT NAMED	coord: 8..121
None	No IPR available	SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	coord: 8..123

Main menu

Glutamate receptor subunit 3

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

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