SMED30004776

Overview
NameSMED30004776
Smed IDSMED30004776
Length (bp)1667
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004776 (SMED30004776) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004776 (SMED30004776) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004776 (SMED30004776) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004776 (SMED30004776) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30004776

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30004776SMESG000040928.1 dd_Smed_v4_11707_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30004776 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000722:93507..95173 -8245
Homology
BLAST of SMED30004776 vs. Planmine SMEST
Match: SMESG000040928.1 (SMESG000040928.1)

HSP 1 Score: 876.7 bits (2264), Expect = 0.000e+0
Identity = 498/502 (99.20%), Postives = 500/502 (99.60%), Query Frame = 2
Query:  107 MVKFYLFDVIRNWLKLLILFSFTVGIFMNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKXXXXXXXXXXXXGSQIHLVWHIVDDVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAEXXXXXXXXXXXXXMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKTLGDTDTQFDECSRLRGDSLSHXXXXXXXXXXXXXXXXXXFKIPSFSIILGILFFTMTLILVLIASTLKSSESGKTITVSYAFXXXXXXXXXXXXQMFEMKRWPKKTKIENVVDPALLYLGTSGQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQESFPLFLKIFGNGFYSISMTLAILQRFHSSIIFYKLIGKYKVQ 1612
            MVKFYLFDVIRNWLKLLILFSFTVGIF NYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKILFLFLSIPLFIGSQIHLVWHIV DVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAENYSFYSYFYNNYSMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKTLGDTDTQFDECSRLRGDSLSHENRESIESTNSNISNYYYFKIPSFSIILGILFFTMTLILVLIASTLKSSESGKTITVSYAFSIY+VSIIILVVQMFEMKRWPKKTKIENVVDPALLYLGT+GQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQESFPLFLKIFGNGFYSISMTLAILQRFHSSIIFYKLIGKYKVQ
Sbjct:    1 MVKFYLFDVIRNWLKLLILFSFTVGIFTNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKILFLFLSIPLFIGSQIHLVWHIVGDVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAENYSFYSYFYNNYSMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKTLGDTDTQFDECSRLRGDSLSHENRESIESTNSNISNYYYFKIPSFSIILGILFFTMTLILVLIASTLKSSESGKTITVSYAFSIYIVSIIILVVQMFEMKRWPKKTKIENVVDPALLYLGTAGQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQESFPLFLKIFGNGFYSISMTLAILQRFHSSIIFYKLIGKYKVQ 502          
BLAST of SMED30004776 vs. Planmine SMEST
Match: SMESG000040891.1 (SMESG000040891.1)

HSP 1 Score: 219.164 bits (557), Expect = 2.246e-64
Identity = 174/509 (34.18%), Postives = 274/509 (53.83%), Query Frame = 2
Query:  119 YLFDVIRNWLKLLILFSFTVGIFMNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKXXXXXXXXXXXXGSQIHLVWHI-VDDVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAEXXXXXXXXXXXXXMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKT-----LGDTDTQFDE--CSRLRGDSLSHXXXXXXXXXXXXXXXXXXFKIPSFSIILGILFFTMTLILVLIASTLKSSES----GKTITVSYAFXXXXXXXXXXXXQMFEMKRWPKKTKIENVVDPALLYLGTSGQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVF----EIMNNNIVQESF-PLFLKIFGNGFYSISMTLAILQRFHSSIIFYKLI 1594
            Y +++    L+L  LF F  G F  YCWAC  LD+V+P  +   FW PIA ++G+++    +L +  I         + +    +LF  L  PLF+ + +  +  I V  +KL      T  M + E   FIGT  L + +      F  +K+K    F++L S IG+  YF+F++   QI +FI +A +Y  YS +YNN + + R    H   ++ Y+QPL I+FC     YLI+  FS+T     L D  T+  E    ++      +      E   SN  N   F++P  S++LGIL  T++L+ V I ++L  S S    G+ ++  +   I ++S+ +L +Q+ EM+RWPK  K EN+VD  L+++G  GQI ++ S  +LY +  ++            +LI+Q  LQ L I LSL+R+WI P  K+WQE+ICP+  +   N+ +   +VF    +++N  + + +   LFLK+FGNGF S+  TL ILQR HSS+IF K+I
Sbjct:    5 YKYEIFEKLLQLTGLFYFVSGFFTTYCWACKELDKVSPHEQINNFWNPIAVVSGIINCFNFILTIITISQGKRQVQTERNIEGNLLFYVLCAPLFLATIVFTILEITVFSMKLHE-NDLTMLMSIGEMFLFIGTFFLILNINFKFWIFLGSKMKLLNRFVMLTSFIGIINYFMFHMTDQQITNFISIASDYDAYSKYYNNST-KPREGPFHFSRIKKYVQPLVILFCCTCMVYLIKFYFSRTSSQKNLDDNSTELSEETLDKINDSETENLIIRENEVVRSNTKNPPSFRLPPLSLVLGILLITVSLLAVAILNSLLKSTSLYFTGQYLSTIFPIPIDILSLFLLYMQIIEMERWPKIKKNENIVDSTLVWIGAIGQITIAFSQLELYTF-IRDPGLVAAKDCYYFVLILQTILQTLTISLSLDREWISPERKSWQEYICPAVGILSINISFLIINVFILMGDVLNEQMAKNNITELFLKMFGNGFSSLGETLGILQRLHSSLIFIKII 510          
BLAST of SMED30004776 vs. Planmine SMEST
Match: SMESG000040908.1 (SMESG000040908.1)

HSP 1 Score: 195.667 bits (496), Expect = 1.198e-55
Identity = 181/511 (35.42%), Postives = 290/511 (56.75%), Query Frame = 2
Query:  119 YLFDVIRNWLKLLILFSFTVGIFMNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFI-------RVSWNDPTIQVDFYSKXXXXXXXXXXXXGSQIHLVWHIVDDVKL-SSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAEXXXXXXXXXXXXXMENRNLDSHSPD---LEIYLQPLTIIFCFVSFSYL-IRSEFSKTLGDTDTQFDECSRLRGDSLSHXXXXXXXXXXXXXXXXXXFKIPSFSIILGILFFTMTLILVLIASTLKSSE----SGKTITVSYAFXXXXXXXXXXXXQMFEMKRWPKKTKIENVVDPALLYLGTSGQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQESF-----PLFLKIFGNGFYSISMTLAILQRFHSSIIFYK 1588
            Y FD++   L+   L  F +G   +Y WA   LD  T  +  L+FWEPIA I G++++  ++LI +FI        +  +   I + FY       LSIPL + S  +L+  I+ D     ++G F+ F+   E  FFI T+    ++  ++      ++ ++  F+ LI+ IGM  YF F+IV+ QI +FI VA N S Y        + NRN+ +   D   L  Y+QPL I+FC +   YL I    +     + ++ DE  +L  +S+ ++   S  S NSN S     ++P  S+ILGIL  T ++++++I ++  + +    SG+ I+ ++A  IY++SI++L++Q+FEMKRW K  +  N+VD  L ++G  GQ+   ISTA++ +  Y+ +  S   +I+   LIVQI LQ++ + L+L+R+ IPP +KTWQEFICP+  +   NLG    S+F+++N N  Q+SF      +F++IFG GF S   TL+ILQR HS +IF K
Sbjct:    5 YKFDILEKILEFSCLIYFVLGCLTSYSWASKELDYKTLNSRILLFWEPIAAIMGIVNVFHIILIGFFIYKNSKKKIMKKSHKEINILFY------ILSIPLLLVSMSYLILLIIRDFHCQETIGKFSIFLCFGELGFFIATIVFITFINISKLIIPTKQMAQFFRFLKLITIIGMVNYFFFHIVSQQIYNFISVASNTSIYPK------INNRNIPALPFDFDSLRNYMQPLVILFCCICVIYLVIIFRLANANNPSISENDEYIQLI-ESVHNQQNLSQTSKNSNKSFMKNLQLPPISLILGILLITSSILIIIIINSFLNDKLLYKSGQIISATFASFIYLISIVLLILQIFEMKRWRKNEENFNIVDKILTWIGVCGQLM--ISTAQISLNIYKFEPASAFLLIEYFFLIVQILLQYVTVTLALDRQCIPPKIKTWQEFICPAVGILSINLGLLFLSLFDVINAN-SQKSFNSYETDMFIQIFGAGFQSFGETLSILQRLHSLLIFGK 499          
BLAST of SMED30004776 vs. Planmine SMEST
Match: SMESG000020517.1 (SMESG000020517.1)

HSP 1 Score: 171.785 bits (434), Expect = 8.164e-47
Identity = 151/511 (29.55%), Postives = 249/511 (48.73%), Query Frame = 2
Query:  110 VKFYLFDVIRNWLKLLILFSFTVGIFMNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKXXXXXXXXXXXXGSQIHLVWH----IVDDVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAEXXXXXXXXXXXXXMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKTLGDTDTQ---FDECSRLRGDSLSHXXXXXXXXXXXXXXXXXXFKIPSFSIILGILFFTMTLILVLIASTLKSSE----SGKTITVSYAFXXXXXXXXXXXXQMFEMKRWPKKTKIENVVDPALLYLGTSGQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQ----ESFP-LFLKIFGNGFYSISMTLAILQRFHSSIIFYKLI 1594
            +K +  D+    LK  +L  F +G  +NY W C  LD  +     L F+ PIA    +MD   V L+   I   W+    + D       + L   +       +V+     I+  ++ S    F  F  + E   FI  + L  + + ++   N  + + Y  F++L++  G+     +++   QI +FIK+A  +   S FYN    +  + +S    +  +LQP  I+FCFV  SYLI    S      +T+    DE +   G S       S  + + +   +    +P FS+ L ILF T+T  ++ IA+ + +S      G+ I+  +   IY+ SI +L++QM ++ RW K    + ++D  +L++G +GQ+   ++   +  Y Y  K  S   I +  IL  Q   Q LVI L+L+RKW  P +++W E++CP   +   NL +  FS+F+I+N   +     E  P LF++IF NGF S  + LAILQR HSS+IF K+I
Sbjct:    1 MKIFKLDIFEKVLKFYVLLYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDF--VSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVNYFQ-RIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEIQETEKLLIDEINLRTGASEEDIIASSNPTISFSFKVFQSINLPPFSLGLAILFITVTFFIIAIANNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPK-LSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMI 507          
BLAST of SMED30004776 vs. Planmine SMEST
Match: SMESG000040922.1 (SMESG000040922.1)

HSP 1 Score: 126.716 bits (317), Expect = 6.216e-31
Identity = 152/514 (29.57%), Postives = 247/514 (48.05%), Query Frame = 2
Query:  107 MVKFYLFDVIRNWLKLLILFSFTVGIFMNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKXXXXXXXXXXXXGSQIHLVWHIVDDVK-LSSVGGFTEFMHVTESVFF---IGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAEXXXXXXXXXXXXXMENRNLDSHS-PDLEIYLQPLTIIFCFVS----FSYLIRSEFSKTLGDTDTQFDECSRLRGDSLSHXXXXXXXXXXXXXXXXXXFKIPSFSIILGILFFTMTLILVLIASTLKSSE---SGKTITVSYAFXXXXXXXXXXXXQMFEMKRWPKKTKIENVVDPALLYLGTSGQIFVSISTAKLYMYNYQNKE-FSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQESFP-----LFLKIFGNGFYSISMTLAILQRFHSSIIFYKLI 1594
            M + Y  D+    L    L  F +G   NY WAC  LD  +   E   FW PIA I G+ ++ I +LI+  + V  N  +I   F  + L   L +P F+G+   +   I+  +K   +   FT  +  +E + F   IG +   + M+         K+ E+ +   LI       +F+      QI +F+KVA N+SFY  FY    + NR +D ++  ++  YL P+ I+FC +     F  L+ ++   TL  T+ Q D    ++  S ++              N      P   I+  I       + ++I S L S +   +G+ I+  +    Y ++II+L +Q+ E+  W K +  E  VD  +L++G +GQ+ +    AKL+M   +  E FS L I +  +L+VQI +Q + + ++L RKW+ P +K+WQE + P  +L   N+G+   S+    N N    +       LFL+IFGNGF    + LAI  R HSS+IF K+I
Sbjct:    1 MNESYWSDLFEQILNFFALSYFILGYLTNYLWACNRLDYTSSYKEIFKFWNPIAVITGISNIIIGILIIIALNVRINRVSIPNHFEYQTLIYTLLVPSFLGTVTFMAIRIILTIKSYMNFNDFTMVLSFSEMILFCCGIGLIRKKISMVNPEVNCYLQKLVEFINKSALIGFCNCLIHFM---SAQQIDNFVKVASNFSFYFQFYGKS-LTNRTVDYYNLSNINSYLVPIAILFCCLCVICLFFNLLNNKSQNTL--TEDQNDSQVIVQWTSTTNLLENEPIFDRVRSLNMS----PLLLILALIFLAISIFLTIIINSFLNSYQYNITGQLISTVFPIPFYFLAIILLAIQINEIMEWKKISTNEFTVDKMMLWIGAAGQLVICF--AKLFMEFIERTENFSALIIAKYGLLLVQIFIQTVALNMALNRKWLRPKLKSWQEKLFPPISLLSLNMGFLFISMLNDFNRNTSHSTVKNIDKRLFLRIFGNGFQLPGLILAIFHRMHSSVIFGKMI 502          
The following BLAST results are available for this feature:
BLAST of SMED30004776 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004776 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000040928.10.000e+099.20SMESG000040928.1[more]
SMESG000040891.12.246e-6434.18SMESG000040891.1[more]
SMESG000040908.11.198e-5535.42SMESG000040908.1[more]
SMESG000020517.18.164e-4729.55SMESG000020517.1[more]
SMESG000040922.16.216e-3129.57SMESG000040922.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004776 ID=SMED30004776|Name=SMED30004776|organism=Schmidtea mediterranea sexual|type=transcript|length=1667bp
CACCGTGGTCATCTATAATAGGATCTAAATACACTATGAATTTGGTGATT
ATTATAAATAATGAACTTCAGATCAAAGGTCATTTTGTAGTTTTCATTAG
ACAATAATGGTTAAATTTTATTTGTTTGATGTCATTCGAAATTGGTTAAA
ATTGTTAATATTATTCTCTTTTACGGTGGGAATTTTCATGAATTATTGTT
GGGCTTGTGTATTACTGGATCAAGTGACTCCGATCAATGAGACTTTGATA
TTTTGGGAACCCATAGCGGGAATAAACGGAGTGATGGATTTGTCTATTGT
TCTTCTAATTGTCTATTTTATTCGGGTCTCATGGAATGATCCAACAATCC
AAGTAGATTTTTATTCAAAAATTCTTTTTCTATTTCTGTCTATTCCATTA
TTTATCGGATCTCAAATTCATTTAGTTTGGCATATAGTGGACGATGTCAA
ATTGAGCAGTGTTGGAGGGTTCACTGAATTTATGCATGTGACAGAATCTG
TGTTCTTTATTGGCACCATGACACTGAACATGTATATGATTACAACGAGA
AGGACGTTTAATAAGACAAAAATAAAGGAATACAAAAGTTTTATTCTGTT
AATATCGGCTATTGGAATGTTCAAATATTTTCTTTTTAACATTGTCACTC
ATCAAATACAATCTTTCATTAAAGTAGCAGAGAATTATTCCTTCTATTCT
TACTTTTATAATAATTATTCCATGGAGAATAGAAACCTGGATTCTCATTC
GCCGGATCTAGAAATATACCTTCAACCTTTGACAATAATATTTTGTTTTG
TGTCCTTTTCTTATTTGATAAGATCGGAGTTTTCAAAGACCTTAGGTGAC
ACCGACACTCAGTTTGATGAATGTTCAAGATTGAGAGGTGACAGTTTGTC
ACACGAAAATAGGGAAAGTATAGAAAGTACTAATTCTAACATTTCAAATT
ACTATTATTTTAAAATACCATCTTTTTCGATAATTTTAGGAATATTATTC
TTTACTATGACTTTGATATTGGTTCTGATTGCCAGTACTTTAAAGTCGTC
CGAAAGTGGAAAGACCATAACGGTTAGTTATGCTTTTTCTATCTATGTTG
TGTCAATTATAATTTTGGTGGTTCAAATGTTTGAAATGAAGAGATGGCCA
AAGAAAACGAAAATAGAAAATGTTGTCGACCCAGCACTGTTATATCTAGG
AACTTCTGGTCAGATATTTGTGTCTATTTCAACGGCAAAACTTTATATGT
ATAATTACCAAAACAAGGAATTTTCAATTTTGACAATAATTCAGAATTTA
ATACTGATTGTTCAAATCTCGCTTCAGTTTTTAGTGATACGCTTGAGCTT
GGAAAGAAAATGGATTCCACCAGTCGTTAAAACATGGCAAGAATTTATTT
GTCCATCCTTCACTTTGTTTTGTTTTAATTTGGGATATTTTGGTTTCAGC
GTCTTTGAAATTATGAATAATAATATTGTCCAGGAGAGTTTTCCGCTGTT
TTTGAAAATTTTCGGAAATGGATTCTATTCAATCTCTATGACCCTTGCGA
TACTACAGCGTTTCCACAGTTCGATTATATTTTATAAACTGATCGGAAAA
TATAAAGTGCAATAAATTACTTTTGTTTTATCATTTCAAATGTTTTTTGT
TAATTTTTATCGGAAAC
back to top

protein sequence of SMED30004776-orf-1

>SMED30004776-orf-1 ID=SMED30004776-orf-1|Name=SMED30004776-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=503bp
MVKFYLFDVIRNWLKLLILFSFTVGIFMNYCWACVLLDQVTPINETLIFW
EPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFYSKILFLFLSIPLFI
GSQIHLVWHIVDDVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRT
FNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAENYSFYSYF
YNNYSMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKTLGDTD
TQFDECSRLRGDSLSHENRESIESTNSNISNYYYFKIPSFSIILGILFFT
MTLILVLIASTLKSSESGKTITVSYAFSIYVVSIIILVVQMFEMKRWPKK
TKIENVVDPALLYLGTSGQIFVSISTAKLYMYNYQNKEFSILTIIQNLIL
IVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVF
EIMNNNIVQESFPLFLKIFGNGFYSISMTLAILQRFHSSIIFYKLIGKYK
VQ*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR004878Otopetrin
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 389..411
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 162..184
NoneNo IPR availableTMHMMTMhelixcoord: 426..448
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 320..342
NoneNo IPR availableTMHMMTMhelixcoord: 220..238
NoneNo IPR availableTMHMMTMhelixcoord: 288..310
NoneNo IPR availableTMHMMTMhelixcoord: 461..483
NoneNo IPR availableTMHMMTMhelixcoord: 126..145