Small nuclear ribonucleoprotein Sm D2

Overview
NameSmall nuclear ribonucleoprotein Sm D2
Smed IDSMED30004756
Length (bp)562
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Small nuclear ribonucleoprotein Sm D2 (SMED30004756) t-SNE clustered cells

Violin plots show distribution of expression levels for Small nuclear ribonucleoprotein Sm D2 (SMED30004756) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Small nuclear ribonucleoprotein Sm D2 (SMED30004756) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Small nuclear ribonucleoprotein Sm D2 (SMED30004756) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004756

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30004756SMESG000032344.1 SmedASXL_006135SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30004756SMESG000032344.1 dd_Smed_v4_2994_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30004756SMESG000032344.1 dd_Smed_v4_2994_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30004756SMESG000032344.1 dd_Smed_v4_2994_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004756SMESG000032344.1 dd_Smed_v4_2994_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004756SMESG000032344.1 dd_Smed_v4_2994_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30004756SMESG000032344.1 dd_Smed_v4_2994_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Human
Match: SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide [Source:HGNC Symbol;Acc:HGNC:11159])

HSP 1 Score: 132.88 bits (333), Expect = 9.544e-40
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Human
Match: SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide [Source:HGNC Symbol;Acc:HGNC:11159])

HSP 1 Score: 132.88 bits (333), Expect = 9.544e-40
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Human
Match: SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide [Source:HGNC Symbol;Acc:HGNC:11159])

HSP 1 Score: 127.487 bits (319), Expect = 9.911e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 3 
Query:   99 LTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 104
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Human
Match: SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide [Source:HGNC Symbol;Acc:HGNC:11159])

HSP 1 Score: 127.487 bits (319), Expect = 9.911e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 3 
Query:   99 LTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 104
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Human
Match: SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide [Source:HGNC Symbol;Acc:HGNC:11159])

HSP 1 Score: 127.487 bits (319), Expect = 9.911e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 3 
Query:   99 LTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 104
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Celegans
Match: snr-4 (Probable small nuclear ribonucleoprotein Sm D2 [Source:UniProtKB/Swiss-Prot;Acc:Q18786])

HSP 1 Score: 131.724 bits (330), Expect = 9.292e-40
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = 3 
Query:   81 AVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLA 413
            A P++ +T EELAAKE EEF  GPLS+LTN+V+ N QVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKK+K V+KDR+I K FLRGDSVILV++NPLA
Sbjct:    5 AKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Celegans
Match: snr-4 (Probable small nuclear ribonucleoprotein Sm D2 [Source:UniProtKB/Swiss-Prot;Acc:Q18786])

HSP 1 Score: 131.724 bits (330), Expect = 9.292e-40
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = 3 
Query:   81 AVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLA 413
            A P++ +T EELAAKE EEF  GPLS+LTN+V+ N QVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKK+K V+KDR+I K FLRGDSVILV++NPLA
Sbjct:    5 AKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Celegans
Match: lsm-3 (U6 snRNA-associated Sm-like protein LSm3 [Source:UniProtKB/TrEMBL;Acc:Q9U1W8])

HSP 1 Score: 50.447 bits (119), Expect = 1.653e-8
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 3 
Query:  150 PLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKE-IWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILV 395
            PL +L   +  + +V +  RN+++L GR++AFD+H NMVL  V+E I T E    +   +       R +   F+RGDSVILV
Sbjct:   17 PLDLL--RLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE--VDEDTFEEIYKQTKRVVPMLFVRGDSVILV 95
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Fly
Match: SmD2 (gene:FBgn0261789 transcript:FBtr0081737)

HSP 1 Score: 144.05 bits (362), Expect = 1.675e-44
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:   78 LAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSSE 428
            L  PK+ LTPEELA +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE PR GKGKKK KPV+KDR+I K FLRGDSVILVLRNPLAT + +
Sbjct:    3 LVKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAAGK 119
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Fly
Match: LSm3 (gene:FBgn0051184 transcript:FBtr0084505)

HSP 1 Score: 45.0542 bits (105), Expect = 2.491e-6
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 3 
Query:  183 NTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILV 395
            + +V +  RN ++L GR+ AFD+H NMVL + +E  T      +   +    +  R I   F+RGD VILV
Sbjct:   27 DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT-TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILV 96
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Fly
Match: LSm3 (gene:FBgn0051184 transcript:FBtr0300648)

HSP 1 Score: 45.0542 bits (105), Expect = 2.491e-6
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 3 
Query:  183 NTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILV 395
            + +V +  RN ++L GR+ AFD+H NMVL + +E  T      +   +    +  R I   F+RGD VILV
Sbjct:   27 DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT-TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILV 96
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Zebrafish
Match: snrpd2 (small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10])

HSP 1 Score: 134.42 bits (337), Expect = 1.279e-40
Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLAT 416
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL T
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIT 116
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Zebrafish
Match: snrpd2 (small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10])

HSP 1 Score: 134.42 bits (337), Expect = 1.457e-40
Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLAT 416
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL T
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIT 116
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Xenopus
Match: snrpd2 (small nuclear ribonucleoprotein D2 polypeptide [Source:NCBI gene;Acc:448710])

HSP 1 Score: 132.88 bits (333), Expect = 8.465e-40
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Xenopus
Match: snrpd2 (small nuclear ribonucleoprotein D2 polypeptide [Source:NCBI gene;Acc:448710])

HSP 1 Score: 132.88 bits (333), Expect = 8.465e-40
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Mouse
Match: Snrpd2 (small nuclear ribonucleoprotein D2 [Source:MGI Symbol;Acc:MGI:98345])

HSP 1 Score: 132.88 bits (333), Expect = 6.552e-40
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. UniProt/SwissProt
Match: sp|Q9VI10|SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.679e-43
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:   78 LAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSSE 428
            L  PK+ LTPEELA +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE PR GKGKKK KPV+KDR+I K FLRGDSVILVLRNPLAT + +
Sbjct:    3 LVKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAAGK 119
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. UniProt/SwissProt
Match: sp|P62317|SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.583e-39
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. UniProt/SwissProt
Match: sp|P62316|SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.583e-39
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. UniProt/SwissProt
Match: sp|Q3SZF8|SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.583e-39
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. UniProt/SwissProt
Match: sp|Q18786|SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.182e-38
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = 3 
Query:   81 AVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLA 413
            A P++ +T EELAAKE EEF  GPLS+LTN+V+ N QVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKK+K V+KDR+I K FLRGDSVILV++NPLA
Sbjct:    5 AKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. TrEMBL
Match: A0A1B0CBQ6 (Small nuclear ribonucleoprotein Sm D2 OS=Lutzomyia longipalpis OX=7200 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.203e-43
Identity = 95/121 (78.51%), Postives = 106/121 (87.60%), Query Frame = 3 
Query:   66 MSRNLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSSE 428
            MS  LA PK+ LTPEELA +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE PR GKGKKK KPV+KDR+I K FLRGDSVILVLRNPLAT++ +
Sbjct:    1 MSWALAKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATVAGK 121
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. TrEMBL
Match: A0A504YZL2 (Small nuclear ribonucleoprotein Sm D2 OS=Fasciola gigantica OX=46835 GN=FGIG_06160 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.224e-42
Identity = 96/120 (80.00%), Postives = 106/120 (88.33%), Query Frame = 3 
Query:   66 MSRNLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSS 425
            M++  A P++NL+ EEL   EK+EFETGPLSVLTNAV+ NTQVLINCRNNKKLL RVKAFDRH NMVLENVKE+WTE PRPGKGKKKSKPV+KDR+I K FLRGDSVILVLRNPLAT SS
Sbjct:    1 MAKANAKPRSNLSEEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNPLATASS 120
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. TrEMBL
Match: A0A0C9RCH5 (Small nuclear ribonucleoprotein Sm D2 OS=Fopius arisanus OX=64838 GN=SmD2_0 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.904e-42
Identity = 93/118 (78.81%), Postives = 105/118 (88.98%), Query Frame = 3 
Query:   75 NLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSSE 428
            +LA PK+ +TPEELA +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE PR GKGKKK+KPV+KDR+I K FLRGDSVILVLRNPLAT S +
Sbjct:    3 SLAKPKSEMTPEELAKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNPLATASGK 120
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. TrEMBL
Match: A0A095AP71 (Small nuclear ribonucleoprotein Sm D2 OS=Schistosoma haematobium OX=6185 GN=MS3_04364 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.406e-42
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 3 
Query:   66 MSRNLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSS 425
            M+++ A P+ NLT EEL   EK+EFETGPLSVLTNAV+ NTQVLINCRNNKKLL RVKAFDRH NMVLENVKE+WTE PRPGKGKKKSKPV+KDR+I K FLRGDSVILVLRNPLAT ++
Sbjct:    1 MAKSSAKPRTNLTEEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNPLATAAA 120
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. TrEMBL
Match: A0A183QW74 (Small nuclear ribonucleoprotein Sm D2 OS=Schistosoma rodhaini OX=6188 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.406e-42
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 3 
Query:   66 MSRNLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSS 425
            M+++ A P+ NLT EEL   EK+EFETGPLSVLTNAV+ NTQVLINCRNNKKLL RVKAFDRH NMVLENVKE+WTE PRPGKGKKKSKPV+KDR+I K FLRGDSVILVLRNPLAT ++
Sbjct:    1 MAKSSAKPRTNLTEEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNPLATAAA 120
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Cavefish
Match: snrpd2 (small nuclear ribonucleoprotein D2 polypeptide [Source:NCBI gene;Acc:103024661])

HSP 1 Score: 134.42 bits (337), Expect = 1.084e-40
Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLAT 416
            PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL T
Sbjct:    7 PKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIT 116
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Yeast
Match: SMD2 (Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2 [Source:SGD;Acc:S000004265])

HSP 1 Score: 93.9745 bits (232), Expect = 9.359e-26
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 3 
Query:   87 PKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPL 410
            PK  L+  EL   E+ EF+ GP+S++ +A+ T T V+I+ RNN K++ RVKAFDRH NMVLENVKE+WTE+       K    ++++R+I K FLRGDSVI+VL+ P+
Sbjct:    9 PKHELSRAELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEK-------KGKNVINRERFISKLFLRGDSVIVVLKTPV 109
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Nematostella
Match: EDO33263 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSP8])

HSP 1 Score: 141.739 bits (356), Expect = 6.436e-44
Identity = 90/117 (76.92%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:   66 MSRNLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLAT 416
            M+  L  PK+ +TPEELA +E+EEF TGPLSVLT +V+ NTQVLINCRNN+KLL RVKAFDRH NMVLENVKE+WTE P+ GKGKKK+KPV+KDRYI K FLRGDSVILVLRNPLAT
Sbjct:    1 MTSLLTKPKSEMTPEELAQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNPLAT 117
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Nematostella
Match: EDO46880 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RNM2])

HSP 1 Score: 44.2838 bits (103), Expect = 1.668e-6
Identity = 23/71 (32.39%), Postives = 41/71 (57.75%), Query Frame = 3 
Query:  183 NTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILV 395
            + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T      +   +    +  R +   F+RGD VILV
Sbjct:   25 DERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETIT-TVEIDEETFEELFRTNKRTVPMMFIRGDGVILV 94
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Medaka
Match: snrpd2 (small nuclear ribonucleoprotein D2 polypeptide [Source:NCBI gene;Acc:101158296])

HSP 1 Score: 134.42 bits (337), Expect = 1.228e-40
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:   78 LAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLAT 416
            L  PK+ +TPEEL  +E+EEF TGPLSVLT +V+ NTQVLINCRNNKKLLGRVKAFDRH NMVLENVKE+WTE P+ GKGKKKSKPV+KDRYI K FLRGDSVI+VLRNPL +
Sbjct:    4 LTKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIS 116
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Planmine SMEST
Match: SMESG000032344.1 (SMESG000032344.1)

HSP 1 Score: 192.2 bits (487), Expect = 1.544e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 3 
Query:   66 MSRNLAVPKANLTPXXXXXXXXXXXXTGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILVLRNPLATMSSETA 434
            MSRNLAVPKANLTPEELAAKEKEEFETGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRPGKGKKKSKPVSKDRYIGKYFLRGDSVILVLRNPLATMSSETA
Sbjct:    1 MSRNLAVPKANLTPEELAAKEKEEFETGPLSVLTNAVQTNTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRPGKGKKKSKPVSKDRYIGKYFLRGDSVILVLRNPLATMSSETA 123
[Close]
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Planmine SMEST
Match: SMESG000072617.1 (SMESG000072617.1)

HSP 1 Score: 43.8986 bits (102), Expect = 5.441e-6
Identity = 24/71 (33.80%), Postives = 38/71 (53.52%), Query Frame = 3 
Query:  183 NTQVLINCRNNKKLLGRVKAFDRHFNMVLENVKEIWTEEPRXXXXXXXXXXXXXDRYIGKYFLRGDSVILV 395
            N ++ +  +N+++L G++ AFD H NM L +V+E  T          +    +  R I   F+RGD VILV
Sbjct:   28 NERIYVKMKNDRELRGKLNAFDSHLNMALSDVEETITTL-EIDDETLEEIHKTTKRSIPMLFVRGDGVILV 97
The following BLAST results are available for this feature:
BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SNRPD29.544e-4080.56small nuclear ribonucleoprotein D2 polypeptide [So... [more]
SNRPD29.544e-4080.56small nuclear ribonucleoprotein D2 polypeptide [So... [more]
SNRPD29.911e-3881.73small nuclear ribonucleoprotein D2 polypeptide [So... [more]
SNRPD29.911e-3881.73small nuclear ribonucleoprotein D2 polypeptide [So... [more]
SNRPD29.911e-3881.73small nuclear ribonucleoprotein D2 polypeptide [So... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
snr-49.292e-4075.68Probable small nuclear ribonucleoprotein Sm D2 [S... [more]
snr-49.292e-4075.68Probable small nuclear ribonucleoprotein Sm D2 [S... [more]
lsm-31.653e-838.55U6 snRNA-associated Sm-like protein LSm3 [Source:... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
SmD21.675e-4478.63gene:FBgn0261789 transcript:FBtr0081737[more]
LSm32.491e-636.62gene:FBgn0051184 transcript:FBtr0084505[more]
LSm32.491e-636.62gene:FBgn0051184 transcript:FBtr0300648[more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
snrpd21.279e-4080.00small nuclear ribonucleoprotein D2 polypeptide [So... [more]
snrpd21.457e-4080.00small nuclear ribonucleoprotein D2 polypeptide [So... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
snrpd28.465e-4080.56small nuclear ribonucleoprotein D2 polypeptide [So... [more]
snrpd28.465e-4080.56small nuclear ribonucleoprotein D2 polypeptide [So... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Snrpd26.552e-4080.56small nuclear ribonucleoprotein D2 [Source:MGI Sym... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9VI10|SMD2_DROME1.679e-4378.63Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
sp|P62317|SMD2_MOUSE4.583e-3980.56Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
sp|P62316|SMD2_HUMAN4.583e-3980.56Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
sp|Q3SZF8|SMD2_BOVIN4.583e-3980.56Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
sp|Q18786|SMD2_CAEEL1.182e-3875.68Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1B0CBQ68.203e-4378.51Small nuclear ribonucleoprotein Sm D2 OS=Lutzomyia... [more]
A0A504YZL21.224e-4280.00Small nuclear ribonucleoprotein Sm D2 OS=Fasciola ... [more]
A0A0C9RCH51.904e-4278.81Small nuclear ribonucleoprotein Sm D2 OS=Fopius ar... [more]
A0A095AP713.406e-4279.17Small nuclear ribonucleoprotein Sm D2 OS=Schistoso... [more]
A0A183QW743.406e-4279.17Small nuclear ribonucleoprotein Sm D2 OS=Schistoso... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
snrpd21.084e-4080.00small nuclear ribonucleoprotein D2 polypeptide [So... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
SMD29.359e-2650.93Core Sm protein Sm D2; part of heteroheptameric co... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO332636.436e-4476.92Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO468801.668e-632.39Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
snrpd21.228e-4077.88small nuclear ribonucleoprotein D2 polypeptide [So... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000032344.11.544e-63100.00SMESG000032344.1[more]
SMESG000072617.15.441e-633.80SMESG000072617.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004756 ID=SMED30004756|Name=Small nuclear ribonucleoprotein Sm D2|organism=Schmidtea mediterranea sexual|type=transcript|length=562bp
CAAATATGTATTTTGTTTAAATATATACAGTTTTTGAATTATCTAATTAC
TAAGCGTGTTAAACAATGTCTAGAAATCTTGCAGTTCCCAAAGCAAATTT
AACTCCTGAAGAGTTAGCTGCAAAAGAAAAAGAAGAATTTGAAACTGGAC
CTTTATCTGTATTAACAAATGCTGTTCAAACTAATACTCAAGTTCTTATT
AATTGCAGAAACAATAAAAAATTATTAGGTAGAGTTAAAGCATTTGATAG
ACATTTTAATATGGTTTTGGAAAATGTGAAAGAAATATGGACTGAAGAGC
CAAGGCCAGGAAAAGGCAAAAAGAAATCTAAACCTGTAAGTAAGGACAGA
TATATCGGCAAATATTTTTTGAGAGGGGACTCTGTGATTTTGGTTTTAAG
AAATCCACTGGCTACTATGTCTTCTGAAACAGCTTAATAAATTGTATGTT
AATTAACATTTTGACTTCAGTGTCTGTAACATATGTTTGTAAAATAATTT
TATTTTTGTTAATATCTTGTTATAGATAGTTTATCTAAATATATTAAATG
TGTTAAAAAAAA
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protein sequence of SMED30004756-orf-1

>SMED30004756-orf-1 ID=SMED30004756-orf-1|Name=SMED30004756-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=124bp
MSRNLAVPKANLTPEELAAKEKEEFETGPLSVLTNAVQTNTQVLINCRNN
KKLLGRVKAFDRHFNMVLENVKEIWTEEPRPGKGKKKSKPVSKDRYIGKY
FLRGDSVILVLRNPLATMSSETA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
Vocabulary: biological process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0006397mRNA processing
GO:0008380RNA splicing
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:1990446U1 snRNP binding
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
GO:0005682U5 snRNP
GO:0005685U1 snRNP
GO:0005686U2 snRNP
GO:0005687U4 snRNP
GO:0005689U12-type spliceosomal complex
GO:0005737cytoplasm
GO:0005829cytosol
GO:0030529intracellular ribonucleoprotein complex
GO:0030532small nuclear ribonucleoprotein complex
GO:0034709methylosome
GO:0034715pICln-Sm protein complex
GO:0034719SMN-Sm protein complex
GO:0046540U4/U6 x U5 tri-snRNP complex
GO:0070062extracellular exosome
GO:0071011precatalytic spliceosome
GO:0071013catalytic step 2 spliceosome