SMED30004704

Overview
NameSMED30004704
Smed IDSMED30004704
Length (bp)1711
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004704 (SMED30004704) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004704 (SMED30004704) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004704 (SMED30004704) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004704 (SMED30004704) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30004704

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30004704SMESG000069075.1 SMESG000069074.1 dd_Smed_v4_15195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30004704SMESG000069075.1 SMESG000069074.1 dd_Smed_v4_15195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
tail regionSMED30004704SMESG000069075.1 SMESG000069074.1 dd_Smed_v6_15195_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30004704 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000436:147166..148876 +8528
v31.000436:157151..158861 +8402
Homology
BLAST of SMED30004704 vs. TrEMBL
Match: S5W2R2 (Asic OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 432.565 bits (1111), Expect = 3.746e-143
Identity = 232/496 (46.77%), Postives = 352/496 (70.97%), Query Frame = -3
Query:  162 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEIAN--EGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYS-IETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELP-SSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLY 1634
            +I+LIQSSTIHGIGHI+SATNK++K  W +LF+ G+  IIVNI+ IS+++ S+PV+IS+  ++E FIWPD+TFCNP  P+  T +     +W +  N++ + A    + T + + I +  E +    ER + MS+ +P K++  +  N    IGYIKAH G+YFSKE++ ++ T   +D   LFT+Q+VQ++NNIPC TFH+DKS++     I++L+F    ++ESY++FNSSY  +S+ LYI+N  E+P S+EIIL PG+NN+++L Q+R+ + G++R CRNE +  ELYD++LQS   + GS++DCKK+VSQ+ YV  C CY+ FLPI+K+    PRLCLNA++F+E+++L N++CM+  + +Y +     +    RC  Y+   CN V  K D RKE++++LWSKS+N+RR   +K L+ +  + N T   F+E++++N++++ + R    GDL+KEE EYPFS+LLSDVGGLMGLWLG+SV+GLFEI EF+Y
Sbjct:    1 MIDLIQSSTIHGIGHIFSATNKIFKVLWCILFLVGVIAIIVNIVFISMKFLSNPVIISYTFEHEPFIWPDITFCNPTDPYAFTINSQPYLHWIETLNKTKRVAGKVARQTSMSQLIHSRRENDYELEERTIAMSSADPAKLQATAFQNYLYRIGYIKAHKGLYFSKEFQSSS-TKLNEDWKSLFTSQIVQMRNNIPCHTFHLDKSRIVKQKFIKSLLFRFKLNEESYKIFNSSYTFQSMFLYISNKDEIPQSNEIILTPGYNNVVQLTQNRHSYTGLRRTCRNEKFEAELYDSLLQSTEKYSGSYDDCKKIVSQQKYVKYCNCYNSFLPIFKNSSGFPRLCLNASIFSEAEVLKNAKCMINTFRKYAESDKARRRFYNRCKMYRPIPCNKVLYKIDHRKEILVDLWSKSTNDRRREIIKTLYLKTFQTNETSLDFVEKVKDNIMQLIINRDNESGDLYKEEREYPFSELLSDVGGLMGLWLGLSVIGLFEIVEFVY 495          
BLAST of SMED30004704 vs. TrEMBL
Match: A0A5J4NUF1 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0013022 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.690e-77
Identity = 173/528 (32.77%), Postives = 277/528 (52.46%), Query Frame = -3
Query:  168 AKIFMEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKS--KLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLP---IYKDEKFPPR--LCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINER-CSNYKHDKCNIVKLK-TDQRKEMMIELWSKSSNERRYNELKGLHRQIL----------------------KYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEF 1655
            A +F   +  L++ ST+HG+ H+ +A  KL +  W  L + GI G   N+  I  RY + PVL S+I +YE FIWPD+T CN  AP++L         W  + N+++     L S+ +F  I ++  +    +A+  ST++P +  V        F+     + GI  + E  GN  T     + + F TQ++Q + N+PC T  +  S   +    + ++   + F+ ESYR+ NSSY    + L+I++    P  + I ++PG+   + L  SR      +  CR + YT E++D  L +     GS   C ++VSQ LY+N+C+CYSPFLP   +Y  + F     LC N + F+ +Q+  N+ CM++IY  Y   S+++ +   R C  ++   C+ V+ K +D R+  M+ELWS S NE R   L    + +                       K N +    ++ +R+N   ++V RK+  G+L +EE EYP S+L+SDVGGLMGLW+G+SV+GLFEI E 
Sbjct:   20 ADLFHVGVERLLEHSTVHGLSHVSTAATKLGRITWFCLLLAGIAGFFTNLSFIIDRYLTRPVLTSYISEYEGFIWPDITLCNAMAPYSLHLH-GRIPKWQALRNQASAFAQKLNSS-LFASIDSQDQNEIAIQALMYSTLSPPEYGVGEPEEFIQFVATDVGYQGIILTVEISGNM-THLNPPLKKYFHTQVLQKRYNVPCYTLQLRHSLTAVQSNQVNSIGLGVKFNVESYRIINSSYASPYIDLFISHPGHAPHDDPIEMLPGYTLSLSLRMSRLRREPARLSCRTDFYTTEVFDPDLVTKRRVNGSATFCHRIVSQHLYLNSCHCYSPFLPYPVVYNHKLFSKMAILCFNMSRFSVAQINRNADCMLRIYERYQLSSVYNSVPEARACEQFRKPLCDDVEYKLSDIRRTAMVELWSNSYNEARIAFLTSSFQNLFSSDIPPEQLVSWLDSDTKDDNTKDNDSMPKILKYMRDNFGLLSVNRKSELGELVREELEYPLSELMSDVGGLMGLWIGISVIGLFEIVEL 544          
BLAST of SMED30004704 vs. TrEMBL
Match: A0A183A5V1 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS2336 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 4.955e-70
Identity = 166/512 (32.42%), Postives = 269/512 (52.54%), Query Frame = -3
Query:  165 LIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDK--SKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLP-IYKDEKF----PPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINER-CSNYKH-DKCNIVK-LKTDQRKEMMIELWSKSSNERRYNELKGLH-------------RQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 1625
            L++ ST+HG+ H+ +A++++ +  W++L++ G+ G   N+  I  RY + PVL S+  D+E FIWPD+T CNP AP+ +    + T  W ++  R+T+ A+N   S  +F  I +        +A+  ST++P +  V        F+   K  SGI+ + E      T       + F  Q++Q ++NIPC T  +    S+ D  S   +   + F+ +S+ + NSSY  R++ L+I+     P  E + L+ G+ + + +  +R+     +  CR + +  +++DA L++     GS + C K+VSQ LY+NNC CYSPFLP    DE       P LC N + F  + +  N++CM  +Y +YHD S++  +   + C  ++    C     +    R+  +IELWS + NE R   L                 RQ+L  +         +R N   +T+ RK P G L  EE EYP S+LLSD+GGLMGLW+G+SV+GLFE+ E L
Sbjct:   33 LLEHSTVHGLSHVSTASSRIGRSIWLILWLAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHESFIWPDITLCNPMAPYPVHLR-NRTEKWNELRLRATRVAKNI--SEDLFAAIDDAEQLEIAIQALLYSTISPEQFGVGEPQELIQFVAADKGRSGIHLTVEMYSTF-TDLDAPKTQYFHAQMLQKRHNIPCYTLQLAHVLSQEDCLSTNQVSLGLKFNHDSFLIINSSYAPRNIDLFISLPGHFPEDESMELLSGYTHKVSVSMTRFIREPNRLPCRTDEFVAQMFDANLKTRREIVGSADFCHKLVSQRLYINNCGCYSPFLPYPVVDEHLLVHGQPVLCFNMSHFNITSIDQNAKCMYDVYTQYHDHSVYMNLPEAQYCETFRSTPPCESTSYMPESLRRTPIIELWSDTINEGRTAFLTSTFESVFGPDLPEERIRQLLNNSGNNSNMFTYMRNNFGMVTISRKFPRGTLTHEELEYPLSELLSDLGGLMGLWIGISVIGLFEVVELL 540          
BLAST of SMED30004704 vs. TrEMBL
Match: A0A4S2L913 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009406 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 8.359e-68
Identity = 169/520 (32.50%), Postives = 270/520 (51.92%), Query Frame = -3
Query:  165 KIFMEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDP--YSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPI-----YKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNY--KHDKCNIVKLKTDQ-RKEMMIELWSKSSNERRYNELKGLHRQILKY----NYTGDGF---------IEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 1652
            +IF      L++ ST+HG+ H+ SA++ + +  W +LFV GI G  +N+ +I  RY S PVL S   D++ F+WPD+T CNP AP+ +    D    W ++ + +     ++ S  +F  I        + +A+  ST++P+   V        F+     H GI  + E +GN  T     +++ F T ++Q + NIPC T  +++   +     +  +   + F+ ES+ + N+SYV  +L   I+    +P  E I L+PG+ + I L   R++    KR CRN  + VE++DA L +     GS   C +++SQ LY+  C CYSPFLP      + D    P LC N + F   QL  N++CM  +  +Y D   +  I   R   Y      C  ++ +  Q R+  + ELWS+  N+ R + LK   + + +     N  G  F         +  +REN   IT++RK   G+L +E+ EYP ++LLSD+GGLMGLW+G+SV+GLFE+ E L
Sbjct:   63 RIFHVNARRLLEHSTVHGLSHVSSASSHVGRITWFVLFVAGITGFCINLSLIVSRYVSRPVLTSIFNDHDDFVWPDITICNPSAPYVVHLY-DRHEKWLRLRDWAKNVAQYIPSE-LFAAIDEADKVEIKTQALMHSTMSPSDFGVGIPNETVNFVAADTGHYGIVLTVELDGNL-TYLSAPMEQYFRTHILQKRYNIPCYTLQIEQGMPEDERKRVRKVALGLKFNIESHMIINTSYVSPTLDFIISRPGHMPHDEPIELLPGYMHYIGLNFQRFKREPSKRPCRNNVFDVEVFDANLATKYPVHGSATLCHRILSQNLYIKYCGCYSPFLPYPVIPSHPDFDDSPVLCFNMSRFKIEQLNQNAKCMFNLLEKYRDPVTYMNIPEARECEYLGSVPPCEDIEHQLIQTRRTPLWELWSEKYNDARLSFLKAAFQLVFEVDIVQNRLGKSFHINNDSEPALRYLRENFALITIERKVEKGELIREDLEYPLAELLSDIGGLMGLWIGISVIGLFEVLELL 579          
BLAST of SMED30004704 vs. TrEMBL
Match: A0A504YRR8 (Degenerin unc-8 OS=Fasciola gigantica OX=46835 GN=FGIG_05554 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.705e-61
Identity = 152/515 (29.51%), Postives = 272/515 (52.82%), Query Frame = -3
Query:  153 LIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDK--SKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLP---IYKDEKF--PPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINER-CSNYKHDK-CNIVK-LKTDQRKEMMIELWSKSSNERR-------YNELKGLH------RQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFI 1625
            L++ ST+HG+ H+ +A+ ++ +  W++L++ G+ G   N+  I  RY + PVL S+  D+E FIWPD+T CNP AP+ +  + + +  W  ++  +T     + S  +F  I          +A+  STV+P +   N  +    F+   K  +GI+ + E +    T+        F  Q++Q + NIPC T  +D+  ++ +  S + +   + F+ +S  + NSSY   ++ L+I+    +P  E + ++ G+++ + +   R+     +  CR E +  +++DA L++     GS + C K++SQ LY+++C CYSPFLP   + +D      P LC N + F  S +  N+RCM ++Y ++ ++ I+  +     C  ++    C  +  +    R+  +IE W+ + NE R       +  + G        +Q++  +      +  +R N   + + RK P G L  EE EYP S+LLSDVGGLMGLW+G+SV+GLFE+ E L+ F+
Sbjct:   34 LLEHSTVHGLSHVSTASTRIGRSVWLILWMAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHELFIWPDITLCNPMAPYPVHLN-NRSEKWNLLHQLATAVSRNI-SGNLFATIDEAEQEEVTVQALIHSTVSPMEFGANDPHELVHFVAVDKGQTGIHLTIEMDATF-TNLDIPKHRYFHVQVLQKRYNIPCYTLRLDQVLNEEECASTKQVSLGLKFNHDSNLIINSSYAPFNIDLFISLPGHMPEDEPMEILSGYSHKVTVTMGRFTRERTRLPCRTEQFVTQVFDADLKTQREVVGSADFCLKLLSQRLYIDHCGCYSPFLPYPVMGQDHPLYQHPVLCFNMSHFNASGIDRNARCMYEVYTQFKEDFIYMNLPEAGFCETFRATPPCESINYVLESPRRTPIIEFWADTVNEARSAFVTSTFESVFGQDLPEERLKQMVNNSGNTSSLLFYMRNNFGLVKITRKLPRGTLTHEELEYPLSELLSDVGGLMGLWVGISVIGLFEVVE-LFAFV 544          
BLAST of SMED30004704 vs. Ensembl Sea Lamprey
Match: ASIC5 (acid sensing ion channel subunit family member 5 [Source:HGNC Symbol;Acc:HGNC:17537])

HSP 1 Score: 46.9802 bits (110), Expect = 8.026e-6
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = -3
Query:  165 IRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 335
            +RENL+ I V        L +++   P S LLSD+GG +GL++G SV+ + E+ EF+
Sbjct:  384 MRENLLSIDVAYTDLNYALIQQQKTLPESVLLSDIGGQLGLFVGASVITIIEVLEFV 440          
BLAST of SMED30004704 vs. Ensembl Sea Lamprey
Match: ASIC5 (acid sensing ion channel subunit family member 5 [Source:HGNC Symbol;Acc:HGNC:17537])

HSP 1 Score: 46.9802 bits (110), Expect = 8.481e-6
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = -3
Query:  165 IRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 335
            +RENL+ I V        L +++   P S LLSD+GG +GL++G SV+ + E+ EF+
Sbjct:  394 MRENLLSIDVAYTDLNYALIQQQKTLPESVLLSDIGGQLGLFVGASVITIIEVLEFV 450          
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000069074.1 (SMESG000069074.1)

HSP 1 Score: 1021.92 bits (2641), Expect = 0.000e+0
Identity = 521/522 (99.81%), Postives = 522/522 (100.00%), Query Frame = -3
Query:   78 MEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI 1643
            MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNK+KVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI
Sbjct:    1 MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKIKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI 522          
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000069075.1 (SMESG000069075.1)

HSP 1 Score: 1007.28 bits (2603), Expect = 0.000e+0
Identity = 512/522 (98.08%), Postives = 520/522 (99.62%), Query Frame = -3
Query:   78 MEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI 1643
            MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKST IF++I N+GNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPP+LCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKR+TPFGDLF+EENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTK+IYVQEIDV+SI
Sbjct:    1 MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTEIFEKIENKGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPQLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRRTPFGDLFREENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKIIYVQEIDVFSI 522          
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000069054.1 (SMESG000069054.1)

HSP 1 Score: 483.411 bits (1243), Expect = 2.981e-166
Identity = 253/510 (49.61%), Postives = 354/510 (69.41%), Query Frame = -3
Query:  120 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFL-KSTGIFKEI--ANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSK-LDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSE-IILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKS 1634
            +I L++SSTIHGI HIYSA  KL K  W +LF+FGI GIIVNI  +SIRY S PVLIS+  ++E F+WPD+TFCNP APF L +      YW ++NN+S      L K T +F+ I  + E +    ER + M++ NP K+  +   N   F+GY + HSGIYF+K+ + NNP +F  D+  LF+TQ+VQIQNNIPC TFH+ KS  L+P S+++LVF + F+ +SY +FNSSY  RS+ LYI+N  E+   + I L PGFNNI+ L Q+R+ ++G++R+CR++ +  E+YDA+ Q+V  FEGS+EDCK++VSQ L+V+ C CYSPFLPI+K++   PRLCLNAT F++++LL N++CMV +Y  +     F K  N +C  +K  KC+++  + D RK+M++ELWSK  N +R N +K +H      N +   F E +R+N++ + ++RK  + DLFKEE EYPFS+LLSD+GGLMGLWLGMSVVGLFEI EF Y F I   +  + KS
Sbjct:    1 MIELVKSSTIHGINHIYSANGKLAKFLWCVLFIFGIIGIIVNICFVSIRYFSYPVLISYTFEHEPFVWPDITFCNPTAPFYLDRKSKAYKYWMQINNQSRDVVKMLVKETKLFQIIRESKETDFELEERTIAMASSNPVKLGADLFENHVKFVGYTRPHSGIYFNKDIQNNNPKTFPGDLKPLFSTQIVQIQNNIPCHTFHMHKSNILNPNSVQSLVFGLRFNYDSYEIFNSSYTTRSIFLYISNRDEIQQDQNIFLSPGFNNILSLSQNRHHYNGLRRKCRHKTFKFEVYDALFQNVKTFEGSYEDCKQIVSQRLFVDKCKCYSPFLPIFKNQTGFPRLCLNATFFSKTKLLENAKCMVNVYENFKKSGNFRKHYNNQCLIFKLHKCDLLSYQMDLRKDMLVELWSKVYNGKRLNSIKFMHSYYFGKNESKKDFNEVMRDNIVDLIIERKFEYSDLFKEEREYPFSELLSDIGGLMGLWLGMSVVGLFEILEFFYLFSINACLNKKNKS 510          
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000020604.1 (SMESG000020604.1)

HSP 1 Score: 452.21 bits (1162), Expect = 5.918e-154
Identity = 242/499 (48.50%), Postives = 352/499 (70.54%), Query Frame = -3
Query:  153 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEI--ANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSK-LDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELP-SSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFI 1634
            +I+LIQSSTIHGIGHIYSA  K+ K  W +LF+FG+ GIIVNI+ +S+++ S+PV+IS+  +YE FIWPD+TFCNP  P+    D +   YW K  N++   AE   + + I + I   N+ +    ER + MST +P K+  N   N    IGY+KAH G+YFSKEY+ ++P+ F +++  LFT+Q +QI+NNIPC TFH+DKS+ L    I +L+F   F+++SY++FNSSY  +S+ LYI N +E+P  +EIIL PG+NNI++L Q+RY  +G++R CR + Y VELY+A+LQS   F G+F+DC ++ SQ +YV NC+CYSPFLPIYK+E   PRLCLNA++F+ S++L N++C++  YN++             C  YK   C  +  K D RKEM+++LWSKS+N+RR   +K ++  + + N T   F+ ++++N++++ + R + +GDLFKEE EYPF++LLSD+GGLMGLWLG+SVVGLFEI EFLY F+
Sbjct:    1 MIDLIQSSTIHGIGHIYSAPGKVSKGLWCILFLFGVVGIIVNIVFVSMKFFSNPVIISYTFEYEPFIWPDITFCNPTDPYAFEIDSEPYLYWIKTLNQTKPIAERVFRESEISQVIHSQNDNDFELEERTIAMSTADPEKLGANGFQNYLTRIGYVKAHRGLYFSKEYQSSSPSKFSENLKPLFTSQTIQIRNNIPCHTFHLDKSRFLSQRRIRSLIFRFKFNEKSYKMFNSSYTFQSIFLYINNKNEIPIENEIILTPGYNNIVQLTQNRYVHNGMRRPCRTKEYKVELYEALLQSTETFFGNFDDCNQITSQRMYVENCHCYSPFLPIYKNESGFPRLCLNASIFSLSEILNNTKCLIDTYNDFQSAPKIKAKYYSECREYKPIPCERISYKIDHRKEMLVDLWSKSANDRRLGIVKQIYYHVFETNETSSDFVHKVKDNIMQLIINRDSEYGDLFKEEREYPFAELLSDIGGLMGLWLGLSVVGLFEIVEFLYLFL 499          
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000017678.1 (SMESG000017678.1)

HSP 1 Score: 446.432 bits (1147), Expect = 8.226e-152
Identity = 241/513 (46.98%), Postives = 345/513 (67.25%), Query Frame = -3
Query:  111 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEIANEGNSG--ARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSK-LDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELP-SSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKL 1634
            +I ++QSSTIHG+ HI+ A +++ K  WI LF+FGI GI VNI+ + I+Y S+PVLISH +D+E FIWPD+TFC P AP+   ++     +W  V  R+ +  E     T +FK I  + N+     ER + MS+ +P K+K N      + I + K   GIY+  +  G   TSF +D+  LFT  LVQI+NNIPC TFH+DKSK L+   I+++ FY+ F+ ESY +FNSSY+ RS+ LYITN + +P  +EI+L PGFNNI+ L QSRYE+ G+ R+CRN+ +  ELYD +LQS + FEG ++DCKKV SQ+L+V  C CYSPFLPIYK+E  PPR+CLNAT ++E +++ N++CM  +Y ++     F      +C +Y+  KCN VK K ++ KE+ +E WS  +N+RR   LK +   +++  +    + E++R+N I IT+ R+   GDL+KEE EYPFS+LLSD+GGLMGLWLGMSVVGLFEIFE +Y ++  L  +  K+ + +
Sbjct:    1 MIEILQSSTIHGVSHIHGAKSQITKVLWIFLFIFGIIGIFVNIVFVIIKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVLRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLME-KFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNM 512          
The following BLAST results are available for this feature:
BLAST of SMED30004704 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
S5W2R23.746e-14346.77Asic OS=Schmidtea mediterranea OX=79327 PE=2 SV=1[more]
A0A5J4NUF16.690e-7732.77Uncharacterized protein OS=Paragonimus westermani ... [more]
A0A183A5V14.955e-7032.42Uncharacterized protein OS=Echinostoma caproni OX=... [more]
A0A4S2L9138.359e-6832.50Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A504YRR82.705e-6129.51Degenerin unc-8 OS=Fasciola gigantica OX=46835 GN=... [more]
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BLAST of SMED30004704 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ASIC58.026e-640.35acid sensing ion channel subunit family member 5 [... [more]
ASIC58.481e-640.35acid sensing ion channel subunit family member 5 [... [more]
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BLAST of SMED30004704 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004704 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000069074.10.000e+099.81SMESG000069074.1[more]
SMESG000069075.10.000e+098.08SMESG000069075.1[more]
SMESG000069054.12.981e-16649.61SMESG000069054.1[more]
SMESG000020604.15.918e-15448.50SMESG000020604.1[more]
SMESG000017678.18.226e-15246.98SMESG000017678.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004704 ID=SMED30004704|Name=SMED30004704|organism=Schmidtea mediterranea sexual|type=transcript|length=1711bp
ATTGAGCTGGAGAGACATTAAAATTTTGAAAAATAGCCCTCAATAATTTT
ATTAAATATATAAAAAGTGTTTCTTCAAATACTATAAACGTCAATTTCTT
GCACGTAAATTAATTTAGTAGACTTCTTCTGTAACTCCATATGCAAATAT
ATAATAAAATGATATAAAAATTCAAAGATCTCAAACAAGCCCACAACACT
CATCCCCAACCACAACCCCATTAATCCTCCAACATCTGATAATAATTGTG
AAAATGGATATTCGTTTTCTTCCTTGAAAAGATCTCCAAAAGGTGTTTTT
CTTTTCACAGTTATTTTGATGAGGTTTTCTCTGATTTGTTCAATGAAACC
GTCACCAGTATAATTATATTTCAAAATTTGTCTGTGAAGACCTTTGAGTT
CATTATAACGTCTTTCGTTTGATGATTTTGACCACAGTTCAATCATCATT
TCTTTACGTTGGTCTGTTTTCAATTTAACAATATTACATTTGTCATGTTT
ATAATTGGAACATCTTTCATTAATAATTTTACTGAAAATAGATTCATCGT
GATATTCATTGTAAATCTTTACCATACACCTTGAATTGATAAGTAATTGA
GATTCAGTGAATAAAGTTGCATTGAGACAAAGTCGAGGAGGAAATTTCTC
ATCTTTATATATTGGCAAAAATGGGCTGTAACAATAGCAATTATTAACGT
ATAACTCTTGACTCACAACCTTTTTGCAATCTTCAAATGATCCTTCAAAG
AGCGTTACTGATTGAAGCATTGCATCATAAAGTTCTACCGTGTAATTTTC
ATTCCGGCAGCGCCTCTTGATCCCATGGAACTCATATCGGCTCTGCTCCA
ATTCGATTATGTTGTTAAATCCAGGGATGAGAATTATTTCCGAGCTCGGT
AATTCATGCGTATTAGTAATGTACAGAATCAACGAGCGAACTACGTAACT
TGAGTTAAATACTCGATAGCTCTCTTGGTCGAATATGATATAAAAGACCA
AAGTCTCAATTGAATATGGATCCAACTTGGATTTATCAACATGAAAAGTC
TGACAAGGAATATTGTTCTGGATTTGTACGAGTTGAGTTGTAAAAAGTTC
ATCTATGTCATCTTGGAAACTTGTCGGATTATTGCCTTCATATTCCTTGG
AAAAATATATTCCCGAATGTGCTTTAATGTATCCAATAAAGAGGAATTCA
TTGTAATTCGAGTTGACTTTCATTTTGTTTGGATTAACCGTTGACATCGT
TACCGCTCTTTCTCTAGCACCGGAATTTCCTTCATTTGCAATTTCTTTGA
AAATCCCTGTTGACTTCAGAAAGTTTTCAGCTTGAGTTGAACGATTATTG
ACTTTATACCAATATGCTGTTGTGTCAGGATCCTTGGTCAATGTAAAAGG
TGCTCCAGGATTACAGAATGTTAAATCTGGCCAGATGAAGCGTTCATAGT
CAATGATATGGCTGATTAGAACTGGGGAAGAGGAATACCGAATTGAAATG
ACGAGAATATTAACAATAATACCTCCAATACCAAATACAAAGAGCAATAT
CCAAAAGCATTTCCATAATTTATTCGTGGCGGAATAAATATGGCCTATCC
CATGTATTGTGCTACTTTGAATCAAATTAATTAACTTTTCCATAAATATT
TTTGCAATGTAATGACAAAATATTATAAAACATTTTTATCCAATTAAAAT
TTAAGAAAATC
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protein sequence of SMED30004704-orf-1

>SMED30004704-orf-1 ID=SMED30004704-orf-1|Name=SMED30004704-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=523bp
MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVIS
IRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNN
RSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEF
LFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTF
HVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPS
SEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFE
GSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQL
LINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMM
IELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKT
PFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYL
HMELQKKSTKLIYVQEIDVYSI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000421tail
PLANA:0003117parapharyngeal cell
Vocabulary: biological process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
Vocabulary: molecular function
TermDefinition
GO:0005272sodium channel activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001873Epithelial sodium channelPRINTSPR01078AMINACHANNELcoord: 472..488
score: 49.88
coord: 28..45
score: 21.33
coord: 312..329
score: 31.33
coord: 458..472
score: 37.33
coord: 67..83
score: 24.47
IPR001873Epithelial sodium channelPFAMPF00858ASCcoord: 9..492
e-value: 6.1E-42
score: 144.1
IPR001873Epithelial sodium channelPANTHERPTHR11690AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDcoord: 10..507
NoneNo IPR availableGENE3DG3DSA:1.10.3590.10coord: 80..237
e-value: 7.9E-24
score: 86.3
NoneNo IPR availableGENE3DG3DSA:2.60.470.10coord: 58..460
e-value: 7.9E-24
score: 86.3
NoneNo IPR availableGENE3DG3DSA:1.10.287.820coord: 272..386
e-value: 7.9E-24
score: 86.3
NoneNo IPR availableGENE3DG3DSA:1.10.287.770coord: 28..490
e-value: 7.9E-24
score: 86.3
NoneNo IPR availablePANTHERPTHR11690:SF222PICKPOCKET 6-RELATEDcoord: 10..507
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 478..500