SMED30004704
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004704 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Alignments
SMED30004704 aligns in the following genomic locations:
Homology
BLAST of SMED30004704 vs. TrEMBL
Match: S5W2R2 (Asic OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 432.565 bits (1111), Expect = 3.746e-143 Identity = 232/496 (46.77%), Postives = 352/496 (70.97%), Query Frame = -3 Query: 162 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEIAN--EGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYS-IETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELP-SSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLY 1634 +I+LIQSSTIHGIGHI+SATNK++K W +LF+ G+ IIVNI+ IS+++ S+PV+IS+ ++E FIWPD+TFCNP P+ T + +W + N++ + A + T + + I + E + ER + MS+ +P K++ + N IGYIKAH G+YFSKE++ ++ T +D LFT+Q+VQ++NNIPC TFH+DKS++ I++L+F ++ESY++FNSSY +S+ LYI+N E+P S+EIIL PG+NN+++L Q+R+ + G++R CRNE + ELYD++LQS + GS++DCKK+VSQ+ YV C CY+ FLPI+K+ PRLCLNA++F+E+++L N++CM+ + +Y + + RC Y+ CN V K D RKE++++LWSKS+N+RR +K L+ + + N T F+E++++N++++ + R GDL+KEE EYPFS+LLSDVGGLMGLWLG+SV+GLFEI EF+Y Sbjct: 1 MIDLIQSSTIHGIGHIFSATNKIFKVLWCILFLVGVIAIIVNIVFISMKFLSNPVIISYTFEHEPFIWPDITFCNPTDPYAFTINSQPYLHWIETLNKTKRVAGKVARQTSMSQLIHSRRENDYELEERTIAMSSADPAKLQATAFQNYLYRIGYIKAHKGLYFSKEFQSSS-TKLNEDWKSLFTSQIVQMRNNIPCHTFHLDKSRIVKQKFIKSLLFRFKLNEESYKIFNSSYTFQSMFLYISNKDEIPQSNEIILTPGYNNVVQLTQNRHSYTGLRRTCRNEKFEAELYDSLLQSTEKYSGSYDDCKKIVSQQKYVKYCNCYNSFLPIFKNSSGFPRLCLNASIFSEAEVLKNAKCMINTFRKYAESDKARRRFYNRCKMYRPIPCNKVLYKIDHRKEILVDLWSKSTNDRRREIIKTLYLKTFQTNETSLDFVEKVKDNIMQLIINRDNESGDLYKEEREYPFSELLSDVGGLMGLWLGLSVIGLFEIVEFVY 495
BLAST of SMED30004704 vs. TrEMBL
Match: A0A5J4NUF1 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0013022 PE=3 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 6.690e-77 Identity = 173/528 (32.77%), Postives = 277/528 (52.46%), Query Frame = -3 Query: 168 AKIFMEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKS--KLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLP---IYKDEKFPPR--LCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINER-CSNYKHDKCNIVKLK-TDQRKEMMIELWSKSSNERRYNELKGLHRQIL----------------------KYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEF 1655 A +F + L++ ST+HG+ H+ +A KL + W L + GI G N+ I RY + PVL S+I +YE FIWPD+T CN AP++L W + N+++ L S+ +F I ++ + +A+ ST++P + V F+ + GI + E GN T + + F TQ++Q + N+PC T + S + + ++ + F+ ESYR+ NSSY + L+I++ P + I ++PG+ + L SR + CR + YT E++D L + GS C ++VSQ LY+N+C+CYSPFLP +Y + F LC N + F+ +Q+ N+ CM++IY Y S+++ + R C ++ C+ V+ K +D R+ M+ELWS S NE R L + + K N + ++ +R+N ++V RK+ G+L +EE EYP S+L+SDVGGLMGLW+G+SV+GLFEI E Sbjct: 20 ADLFHVGVERLLEHSTVHGLSHVSTAATKLGRITWFCLLLAGIAGFFTNLSFIIDRYLTRPVLTSYISEYEGFIWPDITLCNAMAPYSLHLH-GRIPKWQALRNQASAFAQKLNSS-LFASIDSQDQNEIAIQALMYSTLSPPEYGVGEPEEFIQFVATDVGYQGIILTVEISGNM-THLNPPLKKYFHTQVLQKRYNVPCYTLQLRHSLTAVQSNQVNSIGLGVKFNVESYRIINSSYASPYIDLFISHPGHAPHDDPIEMLPGYTLSLSLRMSRLRREPARLSCRTDFYTTEVFDPDLVTKRRVNGSATFCHRIVSQHLYLNSCHCYSPFLPYPVVYNHKLFSKMAILCFNMSRFSVAQINRNADCMLRIYERYQLSSVYNSVPEARACEQFRKPLCDDVEYKLSDIRRTAMVELWSNSYNEARIAFLTSSFQNLFSSDIPPEQLVSWLDSDTKDDNTKDNDSMPKILKYMRDNFGLLSVNRKSELGELVREELEYPLSELMSDVGGLMGLWIGISVIGLFEIVEL 544
BLAST of SMED30004704 vs. TrEMBL
Match: A0A183A5V1 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS2336 PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 4.955e-70 Identity = 166/512 (32.42%), Postives = 269/512 (52.54%), Query Frame = -3 Query: 165 LIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDK--SKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLP-IYKDEKF----PPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINER-CSNYKH-DKCNIVK-LKTDQRKEMMIELWSKSSNERRYNELKGLH-------------RQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 1625 L++ ST+HG+ H+ +A++++ + W++L++ G+ G N+ I RY + PVL S+ D+E FIWPD+T CNP AP+ + + T W ++ R+T+ A+N S +F I + +A+ ST++P + V F+ K SGI+ + E T + F Q++Q ++NIPC T + S+ D S + + F+ +S+ + NSSY R++ L+I+ P E + L+ G+ + + + +R+ + CR + + +++DA L++ GS + C K+VSQ LY+NNC CYSPFLP DE P LC N + F + + N++CM +Y +YHD S++ + + C ++ C + R+ +IELWS + NE R L RQ+L + +R N +T+ RK P G L EE EYP S+LLSD+GGLMGLW+G+SV+GLFE+ E L Sbjct: 33 LLEHSTVHGLSHVSTASSRIGRSIWLILWLAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHESFIWPDITLCNPMAPYPVHLR-NRTEKWNELRLRATRVAKNI--SEDLFAAIDDAEQLEIAIQALLYSTISPEQFGVGEPQELIQFVAADKGRSGIHLTVEMYSTF-TDLDAPKTQYFHAQMLQKRHNIPCYTLQLAHVLSQEDCLSTNQVSLGLKFNHDSFLIINSSYAPRNIDLFISLPGHFPEDESMELLSGYTHKVSVSMTRFIREPNRLPCRTDEFVAQMFDANLKTRREIVGSADFCHKLVSQRLYINNCGCYSPFLPYPVVDEHLLVHGQPVLCFNMSHFNITSIDQNAKCMYDVYTQYHDHSVYMNLPEAQYCETFRSTPPCESTSYMPESLRRTPIIELWSDTINEGRTAFLTSTFESVFGPDLPEERIRQLLNNSGNNSNMFTYMRNNFGMVTISRKFPRGTLTHEELEYPLSELLSDLGGLMGLWIGISVIGLFEVVELL 540
BLAST of SMED30004704 vs. TrEMBL
Match: A0A4S2L913 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009406 PE=3 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 8.359e-68 Identity = 169/520 (32.50%), Postives = 270/520 (51.92%), Query Frame = -3 Query: 165 KIFMEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDP--YSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPI-----YKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNY--KHDKCNIVKLKTDQ-RKEMMIELWSKSSNERRYNELKGLHRQILKY----NYTGDGF---------IEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 1652 +IF L++ ST+HG+ H+ SA++ + + W +LFV GI G +N+ +I RY S PVL S D++ F+WPD+T CNP AP+ + D W ++ + + ++ S +F I + +A+ ST++P+ V F+ H GI + E +GN T +++ F T ++Q + NIPC T +++ + + + + F+ ES+ + N+SYV +L I+ +P E I L+PG+ + I L R++ KR CRN + VE++DA L + GS C +++SQ LY+ C CYSPFLP + D P LC N + F QL N++CM + +Y D + I R Y C ++ + Q R+ + ELWS+ N+ R + LK + + + N G F + +REN IT++RK G+L +E+ EYP ++LLSD+GGLMGLW+G+SV+GLFE+ E L Sbjct: 63 RIFHVNARRLLEHSTVHGLSHVSSASSHVGRITWFVLFVAGITGFCINLSLIVSRYVSRPVLTSIFNDHDDFVWPDITICNPSAPYVVHLY-DRHEKWLRLRDWAKNVAQYIPSE-LFAAIDEADKVEIKTQALMHSTMSPSDFGVGIPNETVNFVAADTGHYGIVLTVELDGNL-TYLSAPMEQYFRTHILQKRYNIPCYTLQIEQGMPEDERKRVRKVALGLKFNIESHMIINTSYVSPTLDFIISRPGHMPHDEPIELLPGYMHYIGLNFQRFKREPSKRPCRNNVFDVEVFDANLATKYPVHGSATLCHRILSQNLYIKYCGCYSPFLPYPVIPSHPDFDDSPVLCFNMSRFKIEQLNQNAKCMFNLLEKYRDPVTYMNIPEARECEYLGSVPPCEDIEHQLIQTRRTPLWELWSEKYNDARLSFLKAAFQLVFEVDIVQNRLGKSFHINNDSEPALRYLRENFALITIERKVEKGELIREDLEYPLAELLSDIGGLMGLWIGISVIGLFEVLELL 579
BLAST of SMED30004704 vs. TrEMBL
Match: A0A504YRR8 (Degenerin unc-8 OS=Fasciola gigantica OX=46835 GN=FGIG_05554 PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.705e-61 Identity = 152/515 (29.51%), Postives = 272/515 (52.82%), Query Frame = -3 Query: 153 LIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDK--SKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEII-LIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLP---IYKDEKF--PPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINER-CSNYKHDK-CNIVK-LKTDQRKEMMIELWSKSSNERR-------YNELKGLH------RQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFI 1625 L++ ST+HG+ H+ +A+ ++ + W++L++ G+ G N+ I RY + PVL S+ D+E FIWPD+T CNP AP+ + + + + W ++ +T + S +F I +A+ STV+P + N + F+ K +GI+ + E + T+ F Q++Q + NIPC T +D+ ++ + S + + + F+ +S + NSSY ++ L+I+ +P E + ++ G+++ + + R+ + CR E + +++DA L++ GS + C K++SQ LY+++C CYSPFLP + +D P LC N + F S + N+RCM ++Y ++ ++ I+ + C ++ C + + R+ +IE W+ + NE R + + G +Q++ + + +R N + + RK P G L EE EYP S+LLSDVGGLMGLW+G+SV+GLFE+ E L+ F+ Sbjct: 34 LLEHSTVHGLSHVSTASTRIGRSVWLILWMAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHELFIWPDITLCNPMAPYPVHLN-NRSEKWNLLHQLATAVSRNI-SGNLFATIDEAEQEEVTVQALIHSTVSPMEFGANDPHELVHFVAVDKGQTGIHLTIEMDATF-TNLDIPKHRYFHVQVLQKRYNIPCYTLRLDQVLNEEECASTKQVSLGLKFNHDSNLIINSSYAPFNIDLFISLPGHMPEDEPMEILSGYSHKVTVTMGRFTRERTRLPCRTEQFVTQVFDADLKTQREVVGSADFCLKLLSQRLYIDHCGCYSPFLPYPVMGQDHPLYQHPVLCFNMSHFNASGIDRNARCMYEVYTQFKEDFIYMNLPEAGFCETFRATPPCESINYVLESPRRTPIIEFWADTVNEARSAFVTSTFESVFGQDLPEERLKQMVNNSGNTSSLLFYMRNNFGLVKITRKLPRGTLTHEELEYPLSELLSDVGGLMGLWVGISVIGLFEVVE-LFAFV 544
BLAST of SMED30004704 vs. Ensembl Sea Lamprey
Match: ASIC5 (acid sensing ion channel subunit family member 5 [Source:HGNC Symbol;Acc:HGNC:17537]) HSP 1 Score: 46.9802 bits (110), Expect = 8.026e-6 Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = -3 Query: 165 IRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 335 +RENL+ I V L +++ P S LLSD+GG +GL++G SV+ + E+ EF+ Sbjct: 384 MRENLLSIDVAYTDLNYALIQQQKTLPESVLLSDIGGQLGLFVGASVITIIEVLEFV 440
BLAST of SMED30004704 vs. Ensembl Sea Lamprey
Match: ASIC5 (acid sensing ion channel subunit family member 5 [Source:HGNC Symbol;Acc:HGNC:17537]) HSP 1 Score: 46.9802 bits (110), Expect = 8.481e-6 Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = -3 Query: 165 IRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFL 335 +RENL+ I V L +++ P S LLSD+GG +GL++G SV+ + E+ EF+ Sbjct: 394 MRENLLSIDVAYTDLNYALIQQQKTLPESVLLSDIGGQLGLFVGASVITIIEVLEFV 450
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000069074.1 (SMESG000069074.1) HSP 1 Score: 1021.92 bits (2641), Expect = 0.000e+0 Identity = 521/522 (99.81%), Postives = 522/522 (100.00%), Query Frame = -3 Query: 78 MEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI 1643 MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNK+KVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI Sbjct: 1 MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKIKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI 522
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000069075.1 (SMESG000069075.1) HSP 1 Score: 1007.28 bits (2603), Expect = 0.000e+0 Identity = 512/522 (98.08%), Postives = 520/522 (99.62%), Query Frame = -3 Query: 78 MEKLINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTGIFKEIANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKLIYVQEIDVYSI 1643 MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKST IF++I N+GNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPP+LCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKR+TPFGDLF+EENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTK+IYVQEIDV+SI Sbjct: 1 MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFLKSTEIFEKIENKGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSKLDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPQLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRRTPFGDLFREENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKIIYVQEIDVFSI 522
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000069054.1 (SMESG000069054.1) HSP 1 Score: 483.411 bits (1243), Expect = 2.981e-166 Identity = 253/510 (49.61%), Postives = 354/510 (69.41%), Query Frame = -3 Query: 120 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQAENFL-KSTGIFKEI--ANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSK-LDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELPSSE-IILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKS 1634 +I L++SSTIHGI HIYSA KL K W +LF+FGI GIIVNI +SIRY S PVLIS+ ++E F+WPD+TFCNP APF L + YW ++NN+S L K T +F+ I + E + ER + M++ NP K+ + N F+GY + HSGIYF+K+ + NNP +F D+ LF+TQ+VQIQNNIPC TFH+ KS L+P S+++LVF + F+ +SY +FNSSY RS+ LYI+N E+ + I L PGFNNI+ L Q+R+ ++G++R+CR++ + E+YDA+ Q+V FEGS+EDCK++VSQ L+V+ C CYSPFLPI+K++ PRLCLNAT F++++LL N++CMV +Y + F K N +C +K KC+++ + D RK+M++ELWSK N +R N +K +H N + F E +R+N++ + ++RK + DLFKEE EYPFS+LLSD+GGLMGLWLGMSVVGLFEI EF Y F I + + KS Sbjct: 1 MIELVKSSTIHGINHIYSANGKLAKFLWCVLFIFGIIGIIVNICFVSIRYFSYPVLISYTFEHEPFVWPDITFCNPTAPFYLDRKSKAYKYWMQINNQSRDVVKMLVKETKLFQIIRESKETDFELEERTIAMASSNPVKLGADLFENHVKFVGYTRPHSGIYFNKDIQNNNPKTFPGDLKPLFSTQIVQIQNNIPCHTFHMHKSNILNPNSVQSLVFGLRFNYDSYEIFNSSYTTRSIFLYISNRDEIQQDQNIFLSPGFNNILSLSQNRHHYNGLRRKCRHKTFKFEVYDALFQNVKTFEGSYEDCKQIVSQRLFVDKCKCYSPFLPIFKNQTGFPRLCLNATFFSKTKLLENAKCMVNVYENFKKSGNFRKHYNNQCLIFKLHKCDLLSYQMDLRKDMLVELWSKVYNGKRLNSIKFMHSYYFGKNESKKDFNEVMRDNIVDLIIERKFEYSDLFKEEREYPFSELLSDIGGLMGLWLGMSVVGLFEILEFFYLFSINACLNKKNKS 510
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000020604.1 (SMESG000020604.1) HSP 1 Score: 452.21 bits (1162), Expect = 5.918e-154 Identity = 242/499 (48.50%), Postives = 352/499 (70.54%), Query Frame = -3 Query: 153 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEI--ANEGNSGARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSK-LDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELP-SSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFI 1634 +I+LIQSSTIHGIGHIYSA K+ K W +LF+FG+ GIIVNI+ +S+++ S+PV+IS+ +YE FIWPD+TFCNP P+ D + YW K N++ AE + + I + I N+ + ER + MST +P K+ N N IGY+KAH G+YFSKEY+ ++P+ F +++ LFT+Q +QI+NNIPC TFH+DKS+ L I +L+F F+++SY++FNSSY +S+ LYI N +E+P +EIIL PG+NNI++L Q+RY +G++R CR + Y VELY+A+LQS F G+F+DC ++ SQ +YV NC+CYSPFLPIYK+E PRLCLNA++F+ S++L N++C++ YN++ C YK C + K D RKEM+++LWSKS+N+RR +K ++ + + N T F+ ++++N++++ + R + +GDLFKEE EYPF++LLSD+GGLMGLWLG+SVVGLFEI EFLY F+ Sbjct: 1 MIDLIQSSTIHGIGHIYSAPGKVSKGLWCILFLFGVVGIIVNIVFVSMKFFSNPVIISYTFEYEPFIWPDITFCNPTDPYAFEIDSEPYLYWIKTLNQTKPIAERVFRESEISQVIHSQNDNDFELEERTIAMSTADPEKLGANGFQNYLTRIGYVKAHRGLYFSKEYQSSSPSKFSENLKPLFTSQTIQIRNNIPCHTFHLDKSRFLSQRRIRSLIFRFKFNEKSYKMFNSSYTFQSIFLYINNKNEIPIENEIILTPGYNNIVQLTQNRYVHNGMRRPCRTKEYKVELYEALLQSTETFFGNFDDCNQITSQRMYVENCHCYSPFLPIYKNESGFPRLCLNASIFSLSEILNNTKCLIDTYNDFQSAPKIKAKYYSECREYKPIPCERISYKIDHRKEMLVDLWSKSANDRRLGIVKQIYYHVFETNETSSDFVHKVKDNIMQLIINRDSEYGDLFKEEREYPFAELLSDIGGLMGLWLGLSVVGLFEIVEFLYLFL 499
BLAST of SMED30004704 vs. Planmine SMEST
Match: SMESG000017678.1 (SMESG000017678.1) HSP 1 Score: 446.432 bits (1147), Expect = 8.226e-152 Identity = 241/513 (46.98%), Postives = 345/513 (67.25%), Query Frame = -3 Query: 111 LINLIQSSTIHGIGHIYSATNKLWKCXXXXXXXXXXXXXXXXXXXXXIRYSSSPVLISHIIDYERFIWPDLTFCNPGAPFTLTKDPDTTAYWYKVNNRSTQ-AENFLKSTGIFKEIANEGNSG--ARERAVTMSTVNPNKMKVNSNYNEFLFIGYIKAHSGIYFSKEYEGNNPTSFQDDIDELFTTQLVQIQNNIPCQTFHVDKSK-LDPYSIETLVFYIIFDQESYRVFNSSYVVRSLILYITNTHELP-SSEIILIPGFNNIIELEQSRYEFHGIKRRCRNENYTVELYDAMLQSVTLFEGSFEDCKKVVSQELYVNNCYCYSPFLPIYKDEKFPPRLCLNATLFTESQLLINSRCMVKIYNEYHDESIFSKIINERCSNYKHDKCNIVKLKTDQRKEMMIELWSKSSNERRYNELKGLHRQILKYNYTGDGFIEQIRENLIKITVKRKTPFGDLFKEENEYPFSQLLSDVGGLMGLWLGMSVVGLFEIFEFLYHFIIYLHMELQKKSTKL 1634 +I ++QSSTIHG+ HI+ A +++ K WI LF+FGI GI VNI+ + I+Y S+PVLISH +D+E FIWPD+TFC P AP+ ++ +W V R+ + E T +FK I + N+ ER + MS+ +P K+K N + I + K GIY+ + G TSF +D+ LFT LVQI+NNIPC TFH+DKSK L+ I+++ FY+ F+ ESY +FNSSY+ RS+ LYITN + +P +EI+L PGFNNI+ L QSRYE+ G+ R+CRN+ + ELYD +LQS + FEG ++DCKKV SQ+L+V C CYSPFLPIYK+E PPR+CLNAT ++E +++ N++CM +Y ++ F +C +Y+ KCN VK K ++ KE+ +E WS +N+RR LK + +++ + + E++R+N I IT+ R+ GDL+KEE EYPFS+LLSD+GGLMGLWLGMSVVGLFEIFE +Y ++ L + K+ + + Sbjct: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWIFLFIFGIIGIFVNIVFVIIKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVLRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLME-KFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNM 512 The following BLAST results are available for this feature:
BLAST of SMED30004704 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30004704 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30004704 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30004704 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of SMED30004704 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30004704 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30004704 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004704 ID=SMED30004704|Name=SMED30004704|organism=Schmidtea mediterranea sexual|type=transcript|length=1711bpback to top protein sequence of SMED30004704-orf-1 >SMED30004704-orf-1 ID=SMED30004704-orf-1|Name=SMED30004704-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=523bp MEKLINLIQSSTIHGIGHIYSATNKLWKCFWILLFVFGIGGIIVNILVISback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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