Placenta-specific gene 8 protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004562 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Placenta-specific gene 8 protein vs. Ensembl Human
Match: PLAC8L1 (PLAC8 like 1 [Source:HGNC Symbol;Acc:HGNC:31746]) HSP 1 Score: 47.7506 bits (112), Expect = 3.419e-6 Identity = 36/120 (30.00%), Postives = 57/120 (47.50%), Query Frame = 1 Query: 112 LPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM 471 +P + V+ QP G T+ Q WS+ LF C D C+ L C C + + E +C PL S+ L R R RH+I+GT+ D ++CC+ ++CQ+ R++ Sbjct: 43 VPASAVVKQPVRGASGRTTITAIVQTGG-----GWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFAL-RIGTRERHKIQGTLCEDWLAVHCCWAFSICQVAREL 156
BLAST of Placenta-specific gene 8 protein vs. Ensembl Zebrafish
Match: CU499336.2 (pep chromosome:GRCz11:16:36095663:36099492:-1 gene:ENSDARG00000114387.1 transcript:ENSDART00000180905.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU499336.2) HSP 1 Score: 47.7506 bits (112), Expect = 9.993e-7 Identity = 37/117 (31.62%), Postives = 52/117 (44.44%), Query Frame = 1 Query: 121 NTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM 471 N VI QPG +YG +Q +WS+ L CC D C L CY +K+ E VC P + +RT R + I+GTI DA CC + C++ R++ Sbjct: 3 NPVITQPGAGSYGTN---VQTG--------EWSTGLCSCCSDLLVCALGFFCPIALGCYTANKYGENVC-LACVPGGMAAMRTHMRLTYGIQGTICNDALMTCCCGMFETCRMAREI 107
BLAST of Placenta-specific gene 8 protein vs. Ensembl Zebrafish
Match: plac8.2 (placenta associated 8, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-070424-12]) HSP 1 Score: 46.9802 bits (110), Expect = 1.274e-6 Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 1 Query: 175 IQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMD 474 + QP P+++ + L CCED + C L C C + S NE + +R+ +R ++ I+G++ D C +Y C C CQLKRD++ Sbjct: 3 VTSQPAAFG-PQEFQTGLMSCCEDMSICCCGLFCLPCMGCSIASDMNE-----CCLCGLGMPMRSVYRTKYNIQGSMCTDFCIVYNCMPCAACQLKRDIE 96
BLAST of Placenta-specific gene 8 protein vs. Ensembl Zebrafish
Match: plac8.2 (placenta associated 8, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-070424-12]) HSP 1 Score: 46.9802 bits (110), Expect = 1.274e-6 Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 1 Query: 175 IQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMD 474 + QP P+++ + L CCED + C L C C + S NE + +R+ +R ++ I+G++ D C +Y C C CQLKRD++ Sbjct: 3 VTSQPAAFG-PQEFQTGLMSCCEDMSICCCGLFCLPCMGCSIASDMNE-----CCLCGLGMPMRSVYRTKYNIQGSMCTDFCIVYNCMPCAACQLKRDIE 96
BLAST of Placenta-specific gene 8 protein vs. Ensembl Zebrafish
Match: ponzr5 (plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB-GENE-081104-325]) HSP 1 Score: 45.8246 bits (107), Expect = 4.414e-6 Identity = 35/114 (30.70%), Postives = 54/114 (47.37%), Query Frame = 1 Query: 172 IIQQQPNQRNLPR---DWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-----XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEET 489 + QQP Q + + WSS + CC++ C S C+ C KH E +C PL + L +R R+R+ IKG+I D C C+ CQ+ R+M+ E++ Sbjct: 1 MTTQQPGQFMIAQTNDQWSSGICDCCDNVPECCFSFWCFPCFACSTARKHGECLCLPLLDGFGFIPAITLAMRVSVRSRYGIKGSICKDCAYSTFCGACSWCQISREMNIREQS 114
BLAST of Placenta-specific gene 8 protein vs. Ensembl Zebrafish
Match: ponzr5 (plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB-GENE-081104-325]) HSP 1 Score: 45.8246 bits (107), Expect = 4.713e-6 Identity = 35/114 (30.70%), Postives = 54/114 (47.37%), Query Frame = 1 Query: 172 IIQQQPNQRNLPR---DWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-----XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEET 489 + QQP Q + + WSS + CC++ C S C+ C KH E +C PL + L +R R+R+ IKG+I D C C+ CQ+ R+M+ E++ Sbjct: 4 MTTQQPGQFMIAQTNDQWSSGICDCCDNVPECCFSFWCFPCFACSTARKHGECLCLPLLDGFGFIPAITLAMRVSVRSRYGIKGSICKDCAYSTFCGACSWCQISREMNIREQS 117
BLAST of Placenta-specific gene 8 protein vs. Ensembl Xenopus
Match: pskh2 (protein serine kinase H2 [Source:Xenbase;Acc:XB-GENE-957157]) HSP 1 Score: 53.5286 bits (127), Expect = 1.553e-7 Identity = 30/93 (32.26%), Postives = 50/93 (53.76%), Query Frame = 1 Query: 202 LPRDWSSELFGCCEDCTSCWLSL---CFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM 471 +P W+++ F C D +C L C CYL L+++ C F P ++ +RT R RH+I+G+++ D I CC +C CQ+ R++ Sbjct: 340 VPVSWTTDFFNCFADLKTCLLGTVCPCIMPCYLSKLFNE----TCFLGFLPGAMCSMRTGIRERHKIQGSLLQDYGAICCCPLCATCQVAREI 428
BLAST of Placenta-specific gene 8 protein vs. Ensembl Mouse
Match: Plac8l1 (PLAC8-like 1 [Source:MGI Symbol;Acc:MGI:1916651]) HSP 1 Score: 51.9878 bits (123), Expect = 1.070e-7 Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 1 Query: 112 LPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM 471 +P V+ QP G TV Q DWS+ LF C D C+ L C C + + E +C PL S+ L R R RHRI+GT+ D ++CC+ ++CQ+ R++ Sbjct: 43 VPARVVVKQPIRGAIGRTTVAAIVQTGG-----DWSTGLFSVCRDRKICFWGLLCPMCLECDIARHYGECLCWPLLPGSTFAL-RIGTRERHRIQGTLCEDCVVVHCCWPFSICQVAREL 156
BLAST of Placenta-specific gene 8 protein vs. UniProt/SwissProt
Match: sp|Q08EJ0|PL8L1_MOUSE (PLAC8-like protein 1 OS=Mus musculus OX=10090 GN=Plac8l1 PE=2 SV=2) HSP 1 Score: 51.9878 bits (123), Expect = 7.481e-7 Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 1 Query: 112 LPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM 471 +P V+ QP G TV Q DWS+ LF C D C+ L C C + + E +C PL S+ L R R RHRI+GT+ D ++CC+ ++CQ+ R++ Sbjct: 43 VPARVVVKQPIRGAIGRTTVAAIVQTGG-----DWSTGLFSVCRDRKICFWGLLCPMCLECDIARHYGECLCWPLLPGSTFAL-RIGTRERHRIQGTLCEDCVVVHCCWPFSICQVAREL 156
BLAST of Placenta-specific gene 8 protein vs. UniProt/SwissProt
Match: sp|Q3ZCB2|PLAC8_BOVIN (Placenta-specific gene 8 protein OS=Bos taurus OX=9913 GN=PLAC8 PE=3 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 7.335e-6 Identity = 34/111 (30.63%), Postives = 54/111 (48.65%), Query Frame = 1 Query: 157 GNQTVIIQQQPNQRNLP----RDWSSELFGCCEDCTSCWL-SLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMD 474 + V+I QP + P +W + L C DC C + CF C C + S NE + + +RT +R R+ I G+I D +CC +C++CQ+KRD++ Sbjct: 4 ASSPVVIVTQPGVGSGPAPQNSNWQTGLCDCFSDCGVCLCGTFCFT-CLACQVASDMNE-----CCLCGTSVAMRTLYRTRYGIPGSICDDFMVTHCCPLCSLCQIKRDIN 108
BLAST of Placenta-specific gene 8 protein vs. TrEMBL
Match: A0A074Z7Z6 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_08775 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.678e-20 Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 148 PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 P Y + ++ +QP + RDW L+ C DC SCW LC CY+C +Y ++ E TP+ L+LR+ HRA+H I+GT+ GD YCC +C CQL RDM YVE T G L+ Sbjct: 45 PNYSLKFEMVTEQPRKVLPKRDWIDGLYSCTNDCRSCWCVLCCYPCYMCSMYRRYGECCGTPMGIVFPGLVLRSYHRAKHNIQGTLCGDCAVDYCCTLCAACQLDRDMKYVESTTGILN 163
BLAST of Placenta-specific gene 8 protein vs. TrEMBL
Match: A0A1S8WL90 (Putative Cys-rich domain protein OS=Opisthorchis viverrini OX=6198 GN=X801_09003 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-19 Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 172 IIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 ++ +QP + RDW L+ C DC SCW LC CY+C +Y ++ E TP+ L+LR+ HRA+H I+GT+ GD YCC +C CQL RDM YVE T G L+ Sbjct: 1 MVTEQPRKVLPKRDWIDGLYSCTNDCRSCWCVLCCYPCYMCSMYRRYGECCGTPMGIVFPGLVLRSYHRAKHNIQGTLCGDCAVDYCCTLCAACQLDRDMKYVESTTGILN 111
BLAST of Placenta-specific gene 8 protein vs. TrEMBL
Match: A0A504YXV3 (Placenta-specificprotein 8 protein OS=Fasciola gigantica OX=46835 GN=FGIG_07833 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.361e-19 Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 1 Query: 175 IQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 + QP + RDW LF C DC SCW LC CY+C +YS+++E TPL L LR HRA+H I+GTI D YCC C CQL RDM +VE+T G L+ Sbjct: 5 VTTQPGFPVIKRDWHDGLFDCTNDCHSCWCILCCYPCYMCQMYSRYDECCGTPLAMIFPGLTLRVYHRAKHNIEGTIFNDCLVDYCCTPCAACQLDRDMTFVEQTKGLLN 114
BLAST of Placenta-specific gene 8 protein vs. TrEMBL
Match: A0A2H1CXP3 (Placenta-specificprotein 8 protein OS=Fasciola hepatica OX=6192 GN=D915_000062 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.361e-19 Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 1 Query: 175 IQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 + QP + RDW LF C DC SCW LC CY+C +YS+++E TPL L LR HRA+H I+GTI D YCC C CQL RDM +VE+T G L+ Sbjct: 5 VTTQPGFPVIKRDWHDGLFDCTNDCHSCWCILCCYPCYMCQMYSRYDECCGTPLAMIFPGLTLRVYHRAKHNIEGTIFNDCLVDYCCTPCAACQLDRDMTFVEQTKGLLN 114
BLAST of Placenta-specific gene 8 protein vs. TrEMBL
Match: Q5DB80 (Placenta-specific 8 protein isoform 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_009191 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.371e-19 Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 208 RDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 RDW LF C DC SCWL C CY+CY+Y +++E TP L LR HRA+H I GT+ D K YCC +C+ CQL RDM YVE T+G L+ Sbjct: 15 RDWHDGLFDCTNDCASCWLIFCCYPCYMCYMYRRYDECWATPCLILFPGLTLRAYHRAKHNIHGTLCKDWLKDYCCPLCSACQLDRDMKYVEATSGILN 113
BLAST of Placenta-specific gene 8 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345]) HSP 1 Score: 51.6026 bits (122), Expect = 4.858e-8 Identity = 38/117 (32.48%), Postives = 52/117 (44.44%), Query Frame = 1 Query: 148 PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-------XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDY 477 PT Q V Q NQR + WSS + CCED C C +C K+ E +C PL +R+ R R+ I+G++ D C CC IC CQ+ R++ Y Sbjct: 4 PTVIVQPVAFQPPDNQRIV--QWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
BLAST of Placenta-specific gene 8 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345]) HSP 1 Score: 51.9878 bits (123), Expect = 5.089e-8 Identity = 38/117 (32.48%), Postives = 52/117 (44.44%), Query Frame = 1 Query: 148 PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-------XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDY 477 PT Q V Q NQR + WSS + CCED C C +C K+ E +C PL +R+ R R+ I+G++ D C CC IC CQ+ R++ Y Sbjct: 4 PTVIVQPVAFQPPDNQRIV--QWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
BLAST of Placenta-specific gene 8 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345]) HSP 1 Score: 51.9878 bits (123), Expect = 5.089e-8 Identity = 38/117 (32.48%), Postives = 52/117 (44.44%), Query Frame = 1 Query: 148 PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-------XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDY 477 PT Q V Q NQR + WSS + CCED C C +C K+ E +C PL +R+ R R+ I+G++ D C CC IC CQ+ R++ Y Sbjct: 4 PTVIVQPVAFQPPDNQRIV--QWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
BLAST of Placenta-specific gene 8 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345]) HSP 1 Score: 51.2174 bits (121), Expect = 5.855e-8 Identity = 38/117 (32.48%), Postives = 52/117 (44.44%), Query Frame = 1 Query: 148 PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-------XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDY 477 PT Q V Q NQR + WSS + CCED C C +C K+ E +C PL +R+ R R+ I+G++ D C CC IC CQ+ R++ Y Sbjct: 4 PTVIVQPVAFQPPDNQRIV--QWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
BLAST of Placenta-specific gene 8 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345]) HSP 1 Score: 48.1358 bits (113), Expect = 1.072e-6 Identity = 39/119 (32.77%), Postives = 53/119 (44.54%), Query Frame = 1 Query: 148 PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCED--CTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXX-------XXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDY 477 PT Q V Q NQR + WSS + CCED C W C +C K+ E +C PL +R+ R R+ I+G++ D C CC IC CQ+ R++ Y Sbjct: 4 PTVIVQPVAFQPPDNQRIV--QWSSGICDCCEDMGCFGFWCPYCL----MCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 116
BLAST of Placenta-specific gene 8 protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009354.1 (pep scaffold:Pmarinus_7.0:GL483774:7229:14014:-1 gene:ENSPMAG00000008464.1 transcript:ENSPMAT00000009354.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 43.8986 bits (102), Expect = 4.503e-6 Identity = 28/88 (31.82%), Postives = 42/88 (47.73%), Query Frame = 1 Query: 214 WSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDY 477 WSS + C +D C C + S E C P+ + + L RT R RH I+GT+ D ++CC CT CQ+ R++ + Sbjct: 23 WSSHMMDCFQDTEICVCGFFCLPLLQCKVASDFGECFCVPMLPGALMAL-RTGIRERHHIEGTVFDDFVSLWCCNHCTTCQMARELRH 109
BLAST of Placenta-specific gene 8 protein vs. Ensembl Nematostella
Match: EDO42647 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0V8]) HSP 1 Score: 50.8322 bits (120), Expect = 2.672e-8 Identity = 36/117 (30.77%), Postives = 53/117 (45.30%), Query Frame = 1 Query: 139 PGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXX-XXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEE 486 PG TY I QQ RDWSS LF C +D C ++ LC + + E + + LR K R I+G++ DA + CC C +CQ+ R++D+V + Sbjct: 17 PGTTTY-----TIGQQ-------RDWSSGLFECTKDIGGCLVTFLCPCVTLCQISQRMGEGLAYGCCCADIAAFTLRAKLRTEQNIQGSLCNDAIHVSCCMHCALCQMSRELDHVGK 121
BLAST of Placenta-specific gene 8 protein vs. Ensembl Nematostella
Match: EDO42612 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0W1]) HSP 1 Score: 48.9062 bits (115), Expect = 2.187e-7 Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 1 Query: 208 RDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKH-NEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYV 480 RDW S + GC +D SC L F C+L S+ E C P P +L+ LR K R I+G+++ D C + C +C +CQL R++ ++ Sbjct: 52 RDWHSGMCGCFDDIGSCLLGY-FCPCFLLIDVSQRMGEGCCFPCCCPGALVGLRVKLRVEQNIQGSLINDYCAVQCLPLCVLCQLSRELKHL 142
BLAST of Placenta-specific gene 8 protein vs. Ensembl Medaka
Match: ENSORLT00000028572.1 (cornifelin homolog [Source:NCBI gene;Acc:101172524]) HSP 1 Score: 48.521 bits (114), Expect = 3.888e-7 Identity = 34/115 (29.57%), Postives = 49/115 (42.61%), Query Frame = 1 Query: 127 VIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM 471 V QPG YG +Q +WS+ L C DC C L CY K+ E C + RT R + I+GT+ DA ++CC +C MC++ R++ Sbjct: 6 VTHQPGAGGYGTN---VQTG--------EWSTGLCSCFNDCLICALGFFCPAGLSCYTAHKYGENFCLGCVPGGMTAM-RTHMRLTYGIQGTVCNDAIMVFCCGLCEMCRMAREI 108
BLAST of Placenta-specific gene 8 protein vs. Planmine SMEST
Match: SMESG000050175.1 (SMESG000050175.1) HSP 1 Score: 261.151 bits (666), Expect = 5.218e-89 Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 1 Query: 91 MQYDNNGLPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 MQYDNNGLPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCTPLFTPSSLLLLRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDM+YVEETNGSLD Sbjct: 1 MQYDNNGLPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCTPLFTPSSLLLLRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMNYVEETNGSLD 138
BLAST of Placenta-specific gene 8 protein vs. Planmine SMEST
Match: SMESG000050177.1 (SMESG000050177.1) HSP 1 Score: 149.828 bits (377), Expect = 3.064e-45 Identity = 84/141 (59.57%), Postives = 100/141 (70.92%), Query Frame = 1 Query: 91 MQYDNNGLPCNTVIIQPGV---PTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 MQYDN G V++QPGV P NQT +I QQP N PR WSS + GCCEDCTSC L++ F CY CYL+ ++EF+CTP+ S+L LRTKHRARH I+GTI+ D CK Y CY C +CQLKRDMDYVE+T GSLD Sbjct: 1 MQYDNRGFLPTPVLVQPGVMANPMNINQTTVIIQQP-VANGPRLWSSGICGCCEDCTSCCLTMFFTHCYTCYLFHIYDEFLCTPICMYDSVLQLRTKHRARHGIRGTIIEDCCKTYWCYWCAICQLKRDMDYVEDTKGSLD 140
BLAST of Placenta-specific gene 8 protein vs. Planmine SMEST
Match: SMESG000050244.1 (SMESG000050244.1) HSP 1 Score: 123.25 bits (308), Expect = 3.746e-35 Identity = 76/128 (59.38%), Postives = 90/128 (70.31%), Query Frame = 1 Query: 121 NTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 +I QPG + NQ VI +Q R R+WSS LF CC+DCTSC L ECYLCY+Y + EFVCTPLFTP+S LLLRTKHR+R+ IKG+I+ D C Y CY C MCQLKRDMDYVE+ NG L+ Sbjct: 3 TVIITQPG---HKNQ-VITRQDQIPRTTYRNWSSGLFDCCDDCTSCVLIAFCPECYLCYMYHIYYEFVCTPLFTPASTLLLRTKHRSRNHIKGSIIADCCLTYWCYFCAMCQLKRDMDYVEDKNGYLE 126
BLAST of Placenta-specific gene 8 protein vs. Planmine SMEST
Match: SMESG000050244.1 (SMESG000050244.1) HSP 1 Score: 122.865 bits (307), Expect = 5.355e-35 Identity = 76/130 (58.46%), Postives = 90/130 (69.23%), Query Frame = 1 Query: 121 NTVIIQPGVPTYGNQT--VIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 +I QPG + NQ VI +Q R R+WSS LF CC+DCTSC L ECYLCY+Y + EFVCTPLFTP+S LLLRTKHR+R+ IKG+I+ D C Y CY C MCQLKRDMDYVE+ NG L+ Sbjct: 3 TVIITQPG---HKNQVAPVITRQDQIPRTTYRNWSSGLFDCCDDCTSCVLIAFCPECYLCYMYHIYYEFVCTPLFTPASTLLLRTKHRSRNHIKGSIIADCCLTYWCYFCAMCQLKRDMDYVEDKNGYLE 129
BLAST of Placenta-specific gene 8 protein vs. Planmine SMEST
Match: SMESG000050245.1 (SMESG000050245.1) HSP 1 Score: 122.094 bits (305), Expect = 1.233e-34 Identity = 73/128 (57.03%), Postives = 87/128 (67.97%), Query Frame = 1 Query: 121 NTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCEDCTSCWLSLCFAECYLCYLYSKHNEFVCXXXXXXXXXXXXRTKHRARHRIKGTIMGDACKIYCCYICTMCQLKRDMDYVEETNGSLD 504 + QPG GNQ + Q Q + R+WSS LF CC+DC SCW ECYLCY+Y + EFVCTPLFTP+S LLLRTKHR+R+ IKG+I+ D C Y CY C MCQLKRDMDYVE+ NG L+ Sbjct: 3 TVFVTQPGQ---GNQAITRQNQIAEPTY-RNWSSGLFDCCDDCASCWCVTFCPECYLCYMYHIYYEFVCTPLFTPASTLLLRTKHRSRNHIKGSIIADCCLTYWCYFCAMCQLKRDMDYVEDKNGYLE 126 The following BLAST results are available for this feature:
BLAST of Placenta-specific gene 8 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Placenta-specific gene 8 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Placenta-specific gene 8 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Placenta-specific gene 8 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Placenta-specific gene 8 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Placenta-specific gene 8 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Placenta-specific gene 8 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of Placenta-specific gene 8 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Placenta-specific gene 8 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Placenta-specific gene 8 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Placenta-specific gene 8 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Placenta-specific gene 8 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Placenta-specific gene 8 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Placenta-specific gene 8 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004562 ID=SMED30004562|Name=Placenta-specific gene 8 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=830bpback to top protein sequence of SMED30004562-orf-1 >SMED30004562-orf-1 ID=SMED30004562-orf-1|Name=SMED30004562-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=139bp MQYDNNGLPCNTVIIQPGVPTYGNQTVIIQQQPNQRNLPRDWSSELFGCCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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