CULT domain-containing protein

Overview
NameCULT domain-containing protein
Smed IDSMED30004559
Length (bp)907
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of CULT domain-containing protein (SMED30004559) t-SNE clustered cells

Violin plots show distribution of expression levels for CULT domain-containing protein (SMED30004559) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of CULT domain-containing protein (SMED30004559) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for CULT domain-containing protein (SMED30004559) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004559

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30004559h1SMcG0008298 SmedASXL_006136SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30004559h1SMcG0008298 Contig34076uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004559h1SMcG0008298 Contig34076newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30004559h1SMcG0008298 dd_Smed_v4_11915_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Human
Match: CRBN (cereblon [Source:HGNC Symbol;Acc:HGNC:30185])

HSP 1 Score: 61.6178 bits (148), Expect = 5.135e-10
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYT-----DQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ + E SWF  Y+W+V  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  345 MAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 423
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Human
Match: CRBN (cereblon [Source:HGNC Symbol;Acc:HGNC:30185])

HSP 1 Score: 61.6178 bits (148), Expect = 5.238e-10
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYT-----DQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ + E SWF  Y+W+V  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  346 MAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 424
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Human
Match: CRBN (cereblon [Source:HGNC Symbol;Acc:HGNC:30185])

HSP 1 Score: 61.2326 bits (147), Expect = 7.374e-10
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSY-----TDQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ + E SWF  Y+W+V  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  346 MAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 424
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Celegans
Match: R08B4.3 (pep chromosome:WBcel235:X:11118959:11121005:-1 gene:WBGene00011139.1 transcript:R08B4.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:R08B4.3)

HSP 1 Score: 53.5286 bits (127), Expect = 1.139e-8
Identity = 31/121 (25.62%), Postives = 50/121 (41.32%), Query Frame = 1 
Query:  100 KFLCRLCGESIVANQFILN--KYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFK-------SYTDQFYGVIFSKLV 435
            + LCR CG SI     ++N     Q  +        + +T  +    NPE   F V     A+    G      +W+  Y W++ LC  CS H+GW+F+       S    F G++   ++
Sbjct:   20 ELLCRQCGASITRQSELINITGVDQSQLQYEYDFPLAGKTTKVNVLTNPENQKFHVFGAKTAHLHFHGTPQSHATWYPGYKWTICLCKSCSRHMGWYFEPEKSTAVSEKKSFVGLVLDNVI 140
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Fly
Match: ohgt (gene:FBgn0037780 transcript:FBtr0082174)

HSP 1 Score: 59.3066 bits (142), Expect = 1.656e-9
Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:   88 TFDDK--FLCRLCGESIV--ANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIG-QGTP--EFSWFENYSWSVILCPRCSTHLGWFFKSYTDQFYGVIF 423
            TF D+  F CR C  S+   ++ F ++K   H +  +              + NPEG + E  T Y+  +  IG  G P  +FSWF  Y W +ILC  C+ H+GW FK+        +F
Sbjct:  446 TFKDETLFFCRYCNSSLALCSDLFAMSK---HGVQTQ--------------YCNPEGYIHETNTVYRVISHAIGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVHPNLTPKVF 547
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Zebrafish
Match: si:ch211-51h9.7 (si:ch211-51h9.7 [Source:ZFIN;Acc:ZDB-GENE-081104-235])

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-17
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:  103 FLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFK 390
             LCR CG  +  +  +    S+ A+++RN ++   + + +Q F NP G  FEV T+ +A+          FSW+  +SW+   CPRC THLGW F+
Sbjct:   25 LLCRSCGHELAEDTDLSFVPSRMALSHRNDTVIGGKRVSVQLFENPHGFQFEVVTFRRADVLKHWPADRHFSWYPGHSWTAATCPRCKTHLGWAFQ 120
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Zebrafish
Match: crbn (cereblon [Source:NCBI gene;Acc:445491])

HSP 1 Score: 59.3066 bits (142), Expect = 1.776e-9
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            NP G V E  T YKA N  +IG+ +   SWF  Y+W++  C  CS+H+GW F +        +F+G+  S L+P
Sbjct:  356 NPHGYVHETLTVYKASNLNLIGRPSTLHSWFPGYAWTIAQCRTCSSHMGWKFSAVKKDLSPPRFWGLTRSALLP 429
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Xenopus
Match: mgc69309 (mgc69309 protein [Source:Xenbase;Acc:XB-GENE-5903348])

HSP 1 Score: 56.9954 bits (136), Expect = 1.263e-8
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSY-----TDQFYGVIFSKLVP 438
            NP G V E  T YKA N +++G+ + E SWF  ++W++  C  C +H+GW F +        +F+G+  S L P
Sbjct:  320 NPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWTIAQCRVCGSHMGWKFTAVRKDLSPQKFWGLTRSALQP 393
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Xenopus
Match: mgc69309 (mgc69309 protein [Source:Xenbase;Acc:XB-GENE-5903348])

HSP 1 Score: 56.9954 bits (136), Expect = 1.287e-8
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSY-----TDQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N +++G+ + E SWF  ++W++  C  C +H+GW F +        +F+G+  S L P
Sbjct:  349 MAAYVNPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWTIAQCRVCGSHMGWKFTAVRKDLSPQKFWGLTRSALQP 427
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Xenopus
Match: mgc69309 (mgc69309 protein [Source:Xenbase;Acc:XB-GENE-5903348])

HSP 1 Score: 56.9954 bits (136), Expect = 1.433e-8
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSY-----TDQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N +++G+ + E SWF  ++W++  C  C +H+GW F +        +F+G+  S L P
Sbjct:  329 MAAYVNPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWTIAQCRVCGSHMGWKFTAVRKDLSPQKFWGLTRSALQP 407
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Xenopus
Match: mgc69309 (mgc69309 protein [Source:Xenbase;Acc:XB-GENE-5903348])

HSP 1 Score: 56.9954 bits (136), Expect = 1.543e-8
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSY-----TDQFYGVIFSKLVP 438
            NP G V E  T YKA N +++G+ + E SWF  ++W++  C  C +H+GW F +        +F+G+  S L P
Sbjct:  342 NPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWTIAQCRVCGSHMGWKFTAVRKDLSPQKFWGLTRSALQP 415
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Mouse
Match: Crbn (cereblon [Source:MGI Symbol;Acc:MGI:1913277])

HSP 1 Score: 57.7658 bits (138), Expect = 6.065e-9
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYT-----DQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ +   SWF  Y+W++  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  349 MAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 427
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Mouse
Match: Crbn (cereblon [Source:MGI Symbol;Acc:MGI:1913277])

HSP 1 Score: 57.7658 bits (138), Expect = 6.111e-9
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYT-----DQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ +   SWF  Y+W++  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  348 MAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 426
[Close]
BLAST of CULT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q96SW2|CRBN_HUMAN (Protein cereblon OS=Homo sapiens OX=9606 GN=CRBN PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.516e-9
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYT-----DQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ + E SWF  Y+W+V  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  346 MAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 424
[Close]
BLAST of CULT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5R6Y2|CRBN_PONAB (Protein cereblon OS=Pongo abelii OX=9601 GN=CRBN PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.872e-9
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSY-----TDQFYGVIFSKLVP 438
            +  + NP G V E  T YKA N  +IG+ + E SWF  Y+W+V  C  C++H+GW F +        +F+G+  S L+P
Sbjct:  333 MAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 411
[Close]
BLAST of CULT domain-containing protein vs. UniProt/SwissProt
Match: sp|B4PVI7|CRBN_DROYA (Protein cereblon homolog OS=Drosophila yakuba OX=7245 GN=GE26004 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.571e-9
Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:   88 TFDDK--FLCRLCGESIV--ANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIG-QGTP--EFSWFENYSWSVILCPRCSTHLGWFFKSYTDQFYGVIF 423
            TF D+  F CR C  S+   A+ F ++K   H +  +              + NP+G + E  T Y+  +  IG  G P  +FSWF  Y W +ILC  C+ H+GW FK+        +F
Sbjct:  449 TFKDESLFFCRYCNSSLAHCADLFAMSK---HGVQTQ--------------YCNPDGYIHETNTVYRVMSHAIGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVQPNLTPRVF 550
[Close]
BLAST of CULT domain-containing protein vs. UniProt/SwissProt
Match: sp|B3P4M4|CRBN_DROER (Protein cereblon homolog OS=Drosophila erecta OX=7220 GN=GG17313 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.254e-8
Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:   88 TFDDK--FLCRLCGESIV--ANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIG-QGTP--EFSWFENYSWSVILCPRCSTHLGWFFKSYTDQFYGVIF 423
            TF D+  F CR C  S+   A+ F ++K   H +  +              + NP+G + E  T Y+  +  IG  G P  +FSWF  Y W +ILC  C+ H+GW FK+        +F
Sbjct:  447 TFTDESLFFCRYCNSSLAHCADLFAMSK---HGVQTQ--------------YCNPDGYIHETNTVYRVMSHAIGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVQPNLTPRVF 548
[Close]
BLAST of CULT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q68EH9|CRBN_DANRE (Protein cereblon OS=Danio rerio OX=7955 GN=crbn PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.420e-8
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            NP G V E  T YKA N  +IG+ +   SWF  Y+W++  C  CS+H+GW F +        +F+G+  S L+P
Sbjct:  341 NPHGYVHETLTVYKASNLNLIGRPSTLHSWFPGYAWTIAQCRTCSSHMGWKFSAVKKDLSPPRFWGLTRSALLP 414
[Close]
BLAST of CULT domain-containing protein vs. TrEMBL
Match: A0A0L8FMN4 (CULT domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22013893mg PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.777e-20
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:  103 FLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTDQ--------FYGVIFSKLV 435
             +CR CG  +     +++  S  A+  RN +I S    ++Q F+NPEG  FEV T+ KA      +   E +WF  +SWS+++CP C  H+GWFF+S+           FYG+I S LV
Sbjct:   48 LICRQCGHEVACIDDLVHIPSSLALRQRNDTIQSKDKTIVQLFQNPEGKYFEVITFSKAEVLKADKPHKEDTWFPGFSWSIVICPTCGVHMGWFFESFDSDYHTGEKKSFYGLILSHLV 166
[Close]
BLAST of CULT domain-containing protein vs. TrEMBL
Match: A0A1S3HXW9 (uncharacterized protein LOC106159203 OS=Lingula unguis OX=7574 GN=LOC106159203 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.740e-19
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:   91 FDDKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYT------------DQFYGVIFSKLV 435
            F+D  LCR CG  +     +L+  S  A+  RN +I   + +L+Q F+NP+G+ FE+    KA+   + +   E SWF   +W V +CPRC  HLGWFF+ +T            D F G+I   L+
Sbjct:   61 FEDYLLCRHCGHEVAKASHLLHVPSPLALRQRNDTILGVKEVLIQLFQNPQGSQFEIIAAQKADVYKLNKAFIEHSWFPGLTWRVTVCPRCGHHLGWFFEPHTHDLPETYPEAIKDGFAGLILENLL 187
[Close]
BLAST of CULT domain-containing protein vs. TrEMBL
Match: A0A0B6Z9X6 (CULT domain-containing protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF54211 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.205e-18
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:  103 FLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD----------QFYGVIFSKLV 435
             LCR CG  +   Q +++  S+ A+  RN ++N+N  +L+Q F NP+G  FEV T  +A      +     SWF  Y+WS+  CPRC THLGW F +  +           F G+I  K++
Sbjct:   43 LLCRRCGYDVAKVQDLISIPSKSALRQRNDTVNNNNRILIQLFANPQGMYFEVITSSEAEVERSAERYITDSWFPGYTWSIAKCPRCGTHLGWAFNAVAEGAETGVMKVLSFVGLILDKVM 163
[Close]
BLAST of CULT domain-containing protein vs. TrEMBL
Match: A0A210QMV2 (Protein cereblon OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT23493 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.870e-17
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 1 
Query:   97 DKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFK---------SYTDQFYGVIFSKLVPMQ----LNHYFQVYS 471
            D  LCR CG  +V    ++N  S+ A+  RN +      +L+Q F+NP    FEV T  KA+     Q   + +WF NYSW +  CP C  H+GW ++            +QFYG++   L+P Q    L H+ + Y 
Sbjct:   41 DYLLCRKCGHEVVRAANLINIPSKVALRQRNSTFGGVPEILIQQFKNPHDNSFEVITTRKADVLEDLQKYSDDTWFPNYSWWITKCPHCGQHMGWTYRINSQGTSTDGRPEQFYGLVLDNLLPQQEAETLIHFPKAYG 178
[Close]
BLAST of CULT domain-containing protein vs. TrEMBL
Match: A0A2U9BTY1 (CULT domain-containing protein OS=Scophthalmus maximus OX=52904 GN=SMAX5B_019293 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.527e-17
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:   94 DDKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFK 390
            D   LCR CG  +     I +  S+ A++ RN ++   + + +Q F+NP G  FEV T+ +A+  +       FSWF  +SW+V  CPRC+THLGW F+
Sbjct:   49 DAVLLCRACGHELAVGADIRSVPSRRALSGRNDTLVGGRRVDVQLFQNPHGHRFEVITFRQADVRLHWPADQHFSWFPGFSWTVATCPRCATHLGWAFQ 147
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Cavefish
Match: si:ch211-51h9.7 (si:ch211-51h9.7 [Source:ZFIN;Acc:ZDB-GENE-081104-235])

HSP 1 Score: 72.7886 bits (177), Expect = 1.730e-15
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:  103 FLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFK 390
             LCR CG  +   + +    S+ A+++RN ++   + + +Q F NP+G  +EV T  KA+          F+WF  +SW+V  CPRC THL W F+
Sbjct:    3 LLCRSCGHEVALERDVSFVPSRLALSHRNNTVLGERRITVQLFENPQGFQYEVLTLKKADVLKHWPADKHFTWFPGFSWTVATCPRCKTHL-WAFQ 97
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Cavefish
Match: crbn (cereblon [Source:NCBI gene;Acc:103026236])

HSP 1 Score: 57.3806 bits (137), Expect = 6.425e-9
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            NP G V E  T YKA N  ++G+ +   SWF  Y+W++  C  C +H+GW F +        +F+G+  S L+P
Sbjct:  355 NPHGYVHETLTVYKASNLNLVGRPSTLHSWFPGYAWTIAQCRTCGSHMGWKFSAVKKDLSPPRFWGLTRSALLP 428
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BLAST of CULT domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007868.1 (pep scaffold:Pmarinus_7.0:GL481342:3051:16901:1 gene:ENSPMAG00000007114.1 transcript:ENSPMAT00000007868.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.151 bits (139), Expect = 1.443e-10
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKANA-TIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            +  + NP G V E  T +KA++  +IG+ + E+SWF  Y+W++  C  C +H+GW F +        +F+G+  S L P
Sbjct:   65 MAAYVNPHGYVHETLTVHKASSLNLIGRPSTEYSWFPGYAWTIAQCRDCGSHMGWKFTATRKDMLPAKFWGLTRSALSP 143
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BLAST of CULT domain-containing protein vs. Ensembl Nematostella
Match: EDO42848 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0B6])

HSP 1 Score: 85.8853 bits (211), Expect = 2.531e-20
Identity = 41/99 (41.41%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:   97 DKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKS 393
            D  LCR CG  I     + N  S+ A+  RN +I      L+Q F+NP G  FEV T   AN    G    E SWF  Y+W + +CPRC  HLGW F+ 
Sbjct:   34 DALLCRRCGAEITFAGHLKNVGSKMALRQRNDTILGVNECLIQLFKNPNGNYFEVITADAANIKQQGGAFTEHSWFPGYAWRIAVCPRCGAHLGWSFED 132
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BLAST of CULT domain-containing protein vs. Ensembl Nematostella
Match: EDO28630 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6W7])

HSP 1 Score: 58.151 bits (139), Expect = 1.165e-9
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            L  + NP G V E  T+YKA    + G  T E SWF  Y+W++  C +CS HLGW F +        +F+G+  S L P
Sbjct:  314 LGAYVNPGGFVHETLTFYKALGIRLRGHPTAENSWFPGYAWTIAECQQCSNHLGWRFSAIKKGLSPGKFWGLTRSSLKP 392
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Nematostella
Match: EDO40533 (pep supercontig:ASM20922v1:NEMVEscaffold_84:211683:220625:-1 gene:NEMVEDRAFT_v1g106861 transcript:EDO40533 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.151 bits (139), Expect = 1.197e-9
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  220 LQYFRNPEGTVFEVATYYKA-NATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            L  + NP G V E  T+YKA    + G  T E SWF  Y+W++  C +CS HLGW F +        +F+G+  S L P
Sbjct:  314 LGAYVNPGGFVHETLTFYKALGIRLRGHPTAENSWFPGYAWTIAECQQCSNHLGWRFSAIKKGLSPGKFWGLTRSSLKP 392
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Medaka
Match: si:ch211-51h9.7 (protein cereblon [Source:NCBI gene;Acc:110015676])

HSP 1 Score: 69.707 bits (169), Expect = 1.748e-14
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  118 CGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFK 390
            CG+ + +   I    S+ A++ RN ++ + + + +Q F NP G  FEV T+ KA+ T        FSWF  +SW+V  CPRC +H+ W F+
Sbjct:    2 CGQELASGADIRFVPSRLALSTRNDTLVNGRRVNVQLFENPHGVQFEVVTFRKADVTQHWPADERFSWFPGFSWTVATCPRCRSHV-WAFQ 91
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Medaka
Match: crbn (cereblon [Source:NCBI gene;Acc:101155184])

HSP 1 Score: 55.8398 bits (133), Expect = 1.673e-8
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKAN-ATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            NP G V E  T YKAN   ++G+ +   SWF  Y+W++  C  C +H+GW F +        +F+G+  S ++P
Sbjct:  355 NPHGYVHETLTVYKANNLNLVGRPSTLHSWFPGYAWTIAQCRTCGSHMGWKFTATKKDLSPPRFWGLTRSAMLP 428
[Close]
BLAST of CULT domain-containing protein vs. Ensembl Medaka
Match: crbn (cereblon [Source:NCBI gene;Acc:101155184])

HSP 1 Score: 55.8398 bits (133), Expect = 1.673e-8
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  235 NPEGTVFEVATYYKAN-ATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTD-----QFYGVIFSKLVP 438
            NP G V E  T YKAN   ++G+ +   SWF  Y+W++  C  C +H+GW F +        +F+G+  S ++P
Sbjct:  355 NPHGYVHETLTVYKANNLNLVGRPSTLHSWFPGYAWTIAQCRTCGSHMGWKFTATKKDLSPPRFWGLTRSAMLP 428
[Close]
BLAST of CULT domain-containing protein vs. Planmine SMEST
Match: SMESG000077108.1 (SMESG000077108.1)

HSP 1 Score: 251.906 bits (642), Expect = 7.160e-85
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:   82 YLTFDDKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTDQFYGVIFSKLVPM 441
            YLTFDDKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTDQFYGVIFSKLVP+
Sbjct:   16 YLTFDDKFLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKSYTDQFYGVIFSKLVPV 135
[Close]
BLAST of CULT domain-containing protein vs. Planmine SMEST
Match: SMESG000077110.1 (SMESG000077110.1)

HSP 1 Score: 234.572 bits (597), Expect = 2.591e-78
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -3 
Query:  561 DYGSKTPTAIKIPFKNNEVGLFLCEATDRELCTKCRKFPPPDVSKIESKLNYNSILLCDRLRDLLEPISDLELHLLCNDNRLVSQHWPQLENEPQIEEFKEIVQNPITYQKPSFC 905
            DYGSKTPTAIKIPFKNNEVGLFLCEATDRELCTKCRKFPPPDVSKIESKLNYNSILLCDRLRDLLEPISDLELHLLCNDNRLVSQHWPQLENEPQIEEFKEIVQ PITYQKPSFC
Sbjct:   14 DYGSKTPTAIKIPFKNNEVGLFLCEATDRELCTKCRKFPPPDVSKIESKLNYNSILLCDRLRDLLEPISDLELHLLCNDNRLVSQHWPQLENEPQIEEFKEIVQKPITYQKPSFC 128
[Close]
BLAST of CULT domain-containing protein vs. Planmine SMEST
Match: SMESG000072072.1 (SMESG000072072.1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.977e-11
Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:  103 FLCRLCGESIVANQFILNKYSQHAINNRNYSINSNQTLLLQYFRNPEGTVFEVATYYK-ANATIIGQGTPEFSWFENYSWSVILCPRCSTHLGWFFKS-----YTDQFYGVIFSKLVP 438
            FLC  C + I + Q I+   ++ +               LQ F NP G + E+ T    +N  +IG+ T E+SWF  Y+W+++ C  C++H GW F +       + FYGV  S ++P
Sbjct:  473 FLCNNCQQQITSKQKIVCLATEGS---------------LQTFVNPHGHLHEMLTVIGVSNVQMIGRPTVEYSWFPGYAWTIMQCRTCASHTGWKFTACKSGLKPNVFYGVCRSSVIP 575
The following BLAST results are available for this feature:
BLAST of CULT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CRBN5.135e-1037.97cereblon [Source:HGNC Symbol;Acc:HGNC:30185][more]
CRBN5.238e-1037.97cereblon [Source:HGNC Symbol;Acc:HGNC:30185][more]
CRBN7.374e-1037.97cereblon [Source:HGNC Symbol;Acc:HGNC:30185][more]
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BLAST of CULT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
R08B4.31.139e-825.62pep chromosome:WBcel235:X:11118959:11121005:-1 gen... [more]
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BLAST of CULT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ohgt1.656e-931.93gene:FBgn0037780 transcript:FBtr0082174[more]
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BLAST of CULT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
si:ch211-51h9.73.418e-1735.42si:ch211-51h9.7 [Source:ZFIN;Acc:ZDB-GENE-081104-2... [more]
crbn1.776e-939.19cereblon [Source:NCBI gene;Acc:445491][more]
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BLAST of CULT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
mgc693091.263e-836.49mgc69309 protein [Source:Xenbase;Acc:XB-GENE-59033... [more]
mgc693091.287e-834.18mgc69309 protein [Source:Xenbase;Acc:XB-GENE-59033... [more]
mgc693091.433e-834.18mgc69309 protein [Source:Xenbase;Acc:XB-GENE-59033... [more]
mgc693091.543e-836.49mgc69309 protein [Source:Xenbase;Acc:XB-GENE-59033... [more]
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BLAST of CULT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Crbn6.065e-935.44cereblon [Source:MGI Symbol;Acc:MGI:1913277][more]
Crbn6.111e-935.44cereblon [Source:MGI Symbol;Acc:MGI:1913277][more]
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BLAST of CULT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q96SW2|CRBN_HUMAN2.516e-937.97Protein cereblon OS=Homo sapiens OX=9606 GN=CRBN P... [more]
sp|Q5R6Y2|CRBN_PONAB2.872e-937.97Protein cereblon OS=Pongo abelii OX=9601 GN=CRBN P... [more]
sp|B4PVI7|CRBN_DROYA9.571e-931.93Protein cereblon homolog OS=Drosophila yakuba OX=7... [more]
sp|B3P4M4|CRBN_DROER1.254e-831.93Protein cereblon homolog OS=Drosophila erecta OX=7... [more]
sp|Q68EH9|CRBN_DANRE1.420e-839.19Protein cereblon OS=Danio rerio OX=7955 GN=crbn PE... [more]
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BLAST of CULT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0L8FMN41.777e-2036.97CULT domain-containing protein OS=Octopus bimaculo... [more]
A0A1S3HXW91.740e-1935.43uncharacterized protein LOC106159203 OS=Lingula un... [more]
A0A0B6Z9X69.205e-1835.54CULT domain-containing protein (Fragment) OS=Arion... [more]
A0A210QMV21.870e-1733.33Protein cereblon OS=Mizuhopecten yessoensis OX=657... [more]
A0A2U9BTY12.527e-1738.38CULT domain-containing protein OS=Scophthalmus max... [more]
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BLAST of CULT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
si:ch211-51h9.71.730e-1535.42si:ch211-51h9.7 [Source:ZFIN;Acc:ZDB-GENE-081104-2... [more]
crbn6.425e-936.49cereblon [Source:NCBI gene;Acc:103026236][more]
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BLAST of CULT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000007868.11.443e-1034.18pep scaffold:Pmarinus_7.0:GL481342:3051:16901:1 ge... [more]
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BLAST of CULT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CULT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO428482.531e-2041.41Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO286301.165e-939.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO405331.197e-939.24pep supercontig:ASM20922v1:NEMVEscaffold_84:211683... [more]
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BLAST of CULT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
si:ch211-51h9.71.748e-1436.26protein cereblon [Source:NCBI gene;Acc:110015676][more]
crbn1.673e-835.14cereblon [Source:NCBI gene;Acc:101155184][more]
crbn1.673e-835.14cereblon [Source:NCBI gene;Acc:101155184][more]
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BLAST of CULT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000077108.17.160e-8599.17SMESG000077108.1[more]
SMESG000077110.12.591e-7899.13SMESG000077110.1[more]
SMESG000072072.12.977e-1131.36SMESG000072072.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004559 ID=SMED30004559|Name=CULT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=907bp
TATATAAATCTTATATGGTTAAAATTCTAGTGAAGAATGCTTATATTAAA
ATTAATAATTTGCTTCCTAATTATTGGCCTTTATTTAACATTTGATGATA
AGTTTTTATGTCGACTTTGTGGTGAATCTATAGTGGCTAATCAGTTTATA
TTAAATAAATATAGTCAACATGCAATTAATAATCGAAATTATTCAATAAA
TTCTAATCAGACTTTGTTATTACAATATTTTCGCAACCCTGAAGGTACTG
TTTTTGAAGTTGCTACTTATTATAAAGCAAATGCAACAATAATTGGACAG
GGTACACCCGAGTTTTCTTGGTTTGAAAATTATTCCTGGAGTGTTATATT
GTGTCCTCGCTGTTCCACTCATTTAGGATGGTTTTTTAAAAGTTATACCG
ACCAATTTTACGGAGTGATATTTTCTAAACTTGTTCCAATGCAGCTCAAT
CATTATTTCCAAGTTTATAGCAGAATTAAATGTCACATTATTTGGCTGAG
GATTTCATAATATATTTTAGTGGTTTTTATAATTTTTCTTTTAATCGCTT
ATGATATTTTACAAAAAGACGGTTTCTGATAAGTTATTGGATTTTGGACG
ATTTCTTTGAATTCCTCAATTTGAGGCTCATTTTCCAATTGTGGCCAATG
TTGTGAAACCAAACGATTGTCGTTGCAAAGTAAATGAAGTTCTAAATCTG
ATATTGGTTCAAGCAAATCTCGGAGTCTATCACATAGCAATATTGAATTA
TAATTAAGTTTCGATTCGATTTTACTCACGTCTGGCGGTGGAAATTTCCG
GCATTTGGTGCATAATTCACGGTCTGTTGCTTCACATAGAAATAATCCTA
CTTCGTTATTTTTGAAAGGGATTTTAATTGCTGTTGGTGTTTTGGATCCA
TAATCAG
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protein sequence of SMED30004559-orf-1

>SMED30004559-orf-1 ID=SMED30004559-orf-1|Name=SMED30004559-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=119bp
DYGSKTPTAIKIPFKNNEVGLFLCEATDRELCTKCRKFPPPDVSKIESKL
NYNSILLCDRLRDLLEPISDLELHLLCNDNRLVSQHWPQLENEPQIEEFK
EIVQNPITYQKPSFCKIS*
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protein sequence of SMED30004559-orf-2

>SMED30004559-orf-2 ID=SMED30004559-orf-2|Name=SMED30004559-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=158bp
MLILKLIICFLIIGLYLTFDDKFLCRLCGESIVANQFILNKYSQHAINNR
NYSINSNQTLLLQYFRNPEGTVFEVATYYKANATIIGQGTPEFSWFENYS
WSVILCPRCSTHLGWFFKSYTDQFYGVIFSKLVPMQLNHYFQVYSRIKCH
IIWLRIS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR034750CULT
Vocabulary: molecular function
TermDefinition
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.170.150.20coord: 18..138
e-value: 7.3E-23
score: 82.8
NoneNo IPR availablePANTHERPTHR14255ATP-DEPENDENT PROTEASE CEREBLONcoord: 21..136
NoneNo IPR availablePANTHERPTHR14255:SF12PROTEIN CEREBLONcoord: 21..136
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.773
NoneNo IPR availableTMHMMTMhelixcoord: 2..19
IPR034750CULT domainPROSITEPS51788CULTcoord: 20..136
score: 30.375
IPR034750CULT domainCDDcd15777CRBN_C_likecoord: 23..132
e-value: 1.76177E-24
score: 88.8383