SMED30004553

Overview
NameSMED30004553
Smed IDSMED30004553
Length (bp)1279
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004553 (SMED30004553) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004553 (SMED30004553) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004553 (SMED30004553) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004553 (SMED30004553) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004553

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30004553SMESG000023121.1 SmedASXL_004973SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30004553SMESG000023121.1 dd_Smed_v6_6718_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
enteric muscle cellSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004553SMESG000023121.1 dd_Smed_v4_6718_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30004553 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.009904:9370..16526 -5868
Homology
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BLAST of SMED30004553 vs. Planmine SMEST
Match: SMESG000023121.1 (SMESG000023121.1)

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 331/353 (93.77%), Postives = 334/353 (94.62%), Query Frame = 3 
Query:  195 MQDLIEECELEVLKKYHNGRRKSSLIAIPKQKRIRILMIHGHPKIQIASSANRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQFRTALKNLIEKFGRNQESADTCKTKNKNQESADICKTKNKIVIPDDTVNLEYVLEFNMEKEVMYCVDSPKDKLQNSIYRTFQDLVKERTNGGQINVDLTDDRKNKYNIALFNGQLWVATVKYSENEKKKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENHNLTFIESKIKWIVTEVNEEFILDVLNTKHKDVIFSSSNKLNLVVAHKKEFVNNIQNPQHSCQI 1253
            MQDLIEECELEVLKKYHNGRRKSSLIAIPKQKRIRILMIHGHPKIQIASSA RVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQFRTALKNLIEKFGRNQES  TCKT             KNKIVIPDD VNLEYVLEFNMEKEVMYCVDSPKDKLQNSIYRTFQDLVKERTNGGQINVDLTDDRK+KYNIALFNGQLWVATVKYSENEK+KLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIEN NLTFIESKIKWIVTEVNEEFILDVLNTKHKDVIFSSS+KLNLVVAHKKEFVNNIQNPQH CQI
Sbjct:    1 MQDLIEECELEVLKKYHNGRRKSSLIAIPKQKRIRILMIHGHPKIQIASSAKRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQFRTALKNLIEKFGRNQESTGTCKT-------------KNKIVIPDDKVNLEYVLEFNMEKEVMYCVDSPKDKLQNSIYRTFQDLVKERTNGGQINVDLTDDRKDKYNIALFNGQLWVATVKYSENEKRKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENCNLTFIESKIKWIVTEVNEEFILDVLNTKHKDVIFSSSSKLNLVVAHKKEFVNNIQNPQHFCQI 340
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BLAST of SMED30004553 vs. Planmine SMEST
Match: SMESG000023123.1 (SMESG000023123.1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.186e-18
Identity = 102/393 (25.95%), Postives = 161/393 (40.97%), Query Frame = 3 
Query:  282 KQKRIRILMIHGHPKIQIASSANRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKS-------------------------KVLIFYESSKFHYDQFR--TALKNLIEKFGRNQE--------------------SAD-----------TCKTKNKNQESADICKTKNKIVIPDDTVNLEY-VLEFNMEKEVMYCVDSPKDKLQ-------NSIYRTFQDLVKERTNGGQINVDLTDDRKNKYNIALFNGQLWVATVKYSENEKKKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENHNLTF-IESKI---KWIVTEVNEEFILDV-----LNTKHKDVIFSSSNKLNLVVAHKKEFVNNIQNP 1235
            + K +RIL +   P IQI S++    ++++IS AAG+F+  +     +  KL+LK                          KVL   ES K   D +R  +  +       RN E                    SAD           T      +    DI    + +   DD    +Y V E++ + E ++      +K +       NS       + +E  N G + V+L ++  + + + L   +LWV  V  + N   KLH GD +V V+G    D+F FQ+   N ++ SI ++RLP AKVF +++  SN   I +    L F I +K    KW +TE+N + IL+V      N K +    S    +   V H  EF N +  P
Sbjct:   30 RNKFLRILSLSSVPFIQIVSTSKPTIRDVNISSAAGIFISFKSVNSENVLKLLLKEDKIELRFSDINAFNICKTTFDELFRKVLNKRESIKLFSDNYRHSSGFQTNSCPISRNSEFMNDADNSLLITSKIFLDEDSADNDDQTYVTIVGTVDADLSDNGYIDIGSRDSGVPFCDDIFAYDYEVPEYSSQVEPLFGGYESLEKFEKFRSDNTNSSVFLAMKIREEVLNRGGVKVELDEEFLHSFKVKLIENKLWVCHVNINNN--NKLHVGDRIVTVNGRLPKDVFDFQQICHN-SRASIIIQRLPKAKVFAYDMINSNRQGIKLFKEKLYFKINTKFRREKWKITEINLQNILNVDPAILANIKKQ---LSQERPIMTFVTHSAEFANALSKP 416
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BLAST of SMED30004553 vs. Planmine SMEST
Match: SMESG000023122.1 (SMESG000023122.1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.201e-17
Identity = 84/361 (23.27%), Postives = 157/361 (43.49%), Query Frame = 3 
Query:  282 KQKRIRILMIHGHPKIQIASSANRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQFRTALKNLIEKFGRNQESADTCKTK---NKNQESADICKTKNKIVIPDDTVN------LEYVLEFNMEKEVMYCVD------SPKDKLQNSIY-----------RTFQD--------LVKERTNGGQINVDLTDDRKNKYNIALFNGQLWVATVKYSENEKKKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENHNLTFIESK----IKWIVTEVNEEFILDVLNTKHKDVI------FSSSNKLNLVVAHKKEFVNNIQN 1232
            K+KRIRI+ I   P IQ+  S +RV K+IDIS AA  F+           KLIL  K L  Y +    ++Q + ++  ++  + + ++S  +   +   + NQ       + N+   P+          L   L F   +  ++  D       P+ +  N  Y            TF D        + +E  N G + + +         + + N +LW++ ++        LH GD +++V+   VND+ +F+E  +N+  + + V+RLP A+VF+F+ +  +   I +E +N    +      + W +TE+N       +N   +++I       SS  +   V+ H   F+ N+ +
Sbjct:   21 KEKRIRIMRIQNLPYIQLILSNSRV-KDIDISSAAKCFIKFNTLNFNRSIKLILARKKLQLYFNDVEVFNQCKRSIDTVLTTYHQERQSGSSSHPRTDSDSNQSDKSDSNSLNENNSPNSASQSLKPRKLSCQLNFLDGENAIFNKDYEIPEYQPEAQTMNGGYITLETFPFRNKNTFNDSNIFVAMKIREEVCNFGGVTITVGKHLIENIQVKVMNKKLWISDIQNWNEMNASLHVGDRIISVNERPVNDLQTFRECTKNREDYILIVQRLPKARVFVFDKNKLDVKTIKLEKNNFFLTKPTKPKDLDWAITEINRT---KTVNINDQNIISNIQSVISSYIRYLAVIIHPARFIKNLSD 377
[Close]
BLAST of SMED30004553 vs. Planmine SMEST
Match: SMESG000023122.1 (SMESG000023122.1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.988e-14
Identity = 78/354 (22.03%), Postives = 150/354 (42.37%), Query Frame = 3 
Query:  303 LMIHGHPKIQIASSANRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQFRTALKNLIEKFGRNQESADTCKTK---NKNQESADICKTKNKIVIPDDTVN------LEYVLEFNMEKEVMYCVD------SPKDKLQNSIY-----------RTFQD--------LVKERTNGGQINVDLTDDRKNKYNIALFNGQLWVATVKYSENEKKKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENHNLTFIESK----IKWIVTEVNEEFILDVLNTKHKDVI------FSSSNKLNLVVAHKKEFVNNIQN 1232
            + I   P IQ+  S +RV K+IDIS AA  F+           KLIL  K L  Y +    ++Q + ++  ++  + + ++S  +   +   + NQ       + N+   P+          L   L F   +  ++  D       P+ +  N  Y            TF D        + +E  N G + + +         + + N +LW++ ++        LH GD +++V+   VND+ +F+E  +N+  + + V+RLP A+VF+F+ +  +   I +E +N    +      + W +TE+N       +N   +++I       SS  +   V+ H   F+ N+ +
Sbjct:    1 MRIQNLPYIQLILSNSRV-KDIDISSAAKCFIKFNTLNFNRSIKLILARKKLQLYFNDVEVFNQCKRSIDTVLTTYHQERQSGSSSHPRTDSDSNQSDKSDSNSLNENNSPNSASQSLKPRKLSCQLNFLDGENAIFNKDYEIPEYQPEAQTMNGGYITLETFPFRNKNTFNDSNIFVAMKIREEVCNFGGVTITVGKHLIENIQVKVMNKKLWISDIQNWNEMNASLHVGDRIISVNERPVNDLQTFRECTKNREDYILIVQRLPKARVFVFDKNKLDVKTIKLEKNNFFLTKPTKPKDLDWAITEINRT---KTVNINDQNIISNIQSVISSYIRYLAVIIHPARFIKNLSD 350
[Close]
BLAST of SMED30004553 vs. Planmine SMEST
Match: SMESG000023122.1 (SMESG000023122.1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.118e-13
Identity = 78/357 (21.85%), Postives = 155/357 (43.42%), Query Frame = 3 
Query:  303 LMIHGHPKIQIASSANRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQFRTALKNLIEKFGRNQESADTCKTK---NKNQESADICKTKNKIVIPDD-TVNLEYV--------LEFNMEKEVMYCVD------SPKDKLQNSIY-----------RTFQD--------LVKERTNGGQINVDLTDDRKNKYNIALFNGQLWVATVKYSENEKKKLHFGDMVVAVDGISVNDMFSFQEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENHNLTFIESK----IKWIVTEVNEEFILDVLNTKHKDVI------FSSSNKLNLVVAHKKEFVNNIQN 1232
            + I   P IQ+  S +RV K+IDIS AA  F+           KLIL  K L  Y +    ++Q + ++  ++  + + ++S  +   +   + NQ       + N+   P+  + +L+++        L F   +  ++  D       P+ +  N  Y            TF D        + +E  N G + + +         + + N +LW++ ++        LH GD +++V+   VND+ +F+E  +N+  + + V+RLP A+VF+F+ +  +   I +E +N    +      + W +TE+N       +N   +++I       SS  +   V+ H   F+ N+ +
Sbjct:    1 MRIQNLPYIQLILSNSRV-KDIDISSAAKCFIKFNTLNFNRSIKLILARKKLQLYFNDVEVFNQCKRSIDTVLTTYHQERQSGSSSHPRTDSDSNQSDKSDSNSLNENNSPNSASQSLKFIQPRKLSCQLNFLDGENAIFNKDYEIPEYQPEAQTMNGGYITLETFPFRNKNTFNDSNIFVAMKIREEVCNFGGVTITVGKHLIENIQVKVMNKKLWISDIQNWNEMNASLHVGDRIISVNERPVNDLQTFRECTKNREDYILIVQRLPKARVFVFDKNKLDVKTIKLEKNNFFLTKPTKPKDLDWAITEINRT---KTVNINDQNIISNIQSVISSYIRYLAVIIHPARFIKNLSD 353
The following BLAST results are available for this feature:
BLAST of SMED30004553 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004553 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023121.10.000e+093.77SMESG000023121.1[more]
SMESG000023123.12.186e-1825.95SMESG000023123.1[more]
SMESG000023122.11.201e-1723.27SMESG000023122.1[more]
SMESG000023122.15.988e-1422.03SMESG000023122.1[more]
SMESG000023122.11.118e-1321.85SMESG000023122.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004553 ID=SMED30004553|Name=SMED30004553|organism=Schmidtea mediterranea sexual|type=transcript|length=1279bp
ATCATTATTATTATGATTTTCATTATTTAGATTATAATTATTCACTAACA
ATTATACATTGCAATAAAACAACTAATGACAATTGCAAAATTATATCTTG
TTGCTAAAAACAGAATTGTCACTCATTTTGTACGCAATTTAATTGAATTT
ATCAGAATTATCCGTAATTGCACAGTTAAAAAATTGAATTTTAAATGCAA
GATCTAATAGAAGAATGCGAGTTGGAAGTTCTAAAGAAATATCACAACGG
CAGGCGAAAGAGTTCACTGATTGCAATTCCCAAACAAAAGCGGATCCGAA
TACTGATGATTCATGGTCACCCAAAGATCCAAATTGCATCTTCTGCTAAT
AGAGTATTCAAAGAAATTGATATCTCTGAAGCAGCAGGCTTATTTCTTTG
TCTTGAATATCCAGGAAAACGAAGTCAATTTAAACTGATTCTCAAAAGCA
AAGTTCTAATTTTCTATGAATCGAGCAAGTTTCATTACGACCAATTCAGA
ACTGCCCTTAAGAATCTTATAGAAAAATTTGGACGGAATCAAGAATCCGC
AGATACCTGTAAAACAAAAAACAAAAATCAAGAATCCGCAGATATCTGTA
AAACAAAAAACAAAATTGTTATACCTGATGATACGGTAAATTTGGAATAC
GTACTAGAATTCAACATGGAAAAGGAAGTAATGTATTGCGTCGACAGTCC
AAAAGACAAATTGCAGAATTCCATTTATCGTACTTTCCAAGATTTGGTCA
AGGAAAGGACAAATGGTGGCCAAATAAATGTAGACCTAACAGACGACCGT
AAAAACAAATACAATATAGCATTATTTAACGGTCAATTATGGGTGGCGAC
AGTCAAATACAGCGAGAATGAGAAAAAGAAATTGCATTTCGGTGATATGG
TGGTGGCAGTCGATGGAATATCGGTTAATGATATGTTTTCTTTTCAAGAA
TACGTCAGAAACAAAACGAAATTTTCCATAGCTGTAAAACGCTTACCAAA
CGCAAAAGTGTTTCTTTTTAATATAAGTATGTCAAATCCGCCGAAAATTT
CAATCGAAAATCATAACTTGACTTTCATTGAATCTAAAATCAAATGGATA
GTGACAGAGGTAAATGAAGAGTTCATTTTGGACGTTTTGAATACGAAACA
TAAAGATGTGATTTTCAGTTCAAGCAACAAACTGAATCTCGTCGTTGCCC
ACAAAAAAGAATTCGTTAACAACATTCAAAATCCACAACATTCTTGTCAA
ATTTAAATTTGTATATACATACAATTTCC
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protein sequence of SMED30004553-orf-1

>SMED30004553-orf-1 ID=SMED30004553-orf-1|Name=SMED30004553-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=354bp
MQDLIEECELEVLKKYHNGRRKSSLIAIPKQKRIRILMIHGHPKIQIASS
ANRVFKEIDISEAAGLFLCLEYPGKRSQFKLILKSKVLIFYESSKFHYDQ
FRTALKNLIEKFGRNQESADTCKTKNKNQESADICKTKNKIVIPDDTVNL
EYVLEFNMEKEVMYCVDSPKDKLQNSIYRTFQDLVKERTNGGQINVDLTD
DRKNKYNIALFNGQLWVATVKYSENEKKKLHFGDMVVAVDGISVNDMFSF
QEYVRNKTKFSIAVKRLPNAKVFLFNISMSNPPKISIENHNLTFIESKIK
WIVTEVNEEFILDVLNTKHKDVIFSSSNKLNLVVAHKKEFVNNIQNPQHS
CQI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000418head
PLANA:0002032epidermal cell
PLANA:0003104enteric muscle cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001478PDZ
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036034PDZ superfamilySUPERFAMILYSSF50156PDZ domain-likecoord: 186..260