Y box protein-1

Overview
NameY box protein-1
Smed IDSMED30004532
Length (bp)2961
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Y box protein-1 (SMED30004532) t-SNE clustered cells

Violin plots show distribution of expression levels for Y box protein-1 (SMED30004532) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Y box protein-1 (SMED30004532) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Y box protein-1 (SMED30004532) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30004532

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 25

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30004532SMESG000058043.1 SmedASXL_072287SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30004532SMESG000058043.1 SmedASXL_072287SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30004532SMESG000058013.1 SmedASXL_009658SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30004532SMESG000058013.1 SmedASXL_009658SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30004532SMESG000058043.1 SmedASXL_009659SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30004532SMESG000058043.1 SmedASXL_009659SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30004532SMESG000058013.1 dd_Smed_v4_35_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004532SMESG000058043.1 SMESG000040512.1 SMESG000003282.1 Contig31025uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004532SMESG000058043.1 SMESG000040512.1 SMESG000003282.1 Contig31025newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30004532SMESG000058043.1 SMED30004532smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30004532SMESG000058043.1 SMED30004532smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
Category 2 cellSMED30004532SMESG000058043.1 SMESG000058013.1 dd_Smed_v6_35_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004532SMESG000058043.1 SMESG000058013.1 dd_Smed_v6_35_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004532SMESG000058039.1 SMED_04459_V2_1GPL14150PMID:22385657
Wagner et al., 2012
whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 72.0182 bits (175), Expect = 9.089e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 138          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 71.2478 bits (173), Expect = 2.226e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPVKGSRY 173          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 71.2478 bits (173), Expect = 2.226e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPVKGSRY 173          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 70.4774 bits (171), Expect = 2.234e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 167          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 71.2478 bits (173), Expect = 2.953e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 167          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 77.411 bits (189), Expect = 9.302e-16
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEV+FDIVEG+KGLEA +VTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQG 97          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 70.4774 bits (171), Expect = 6.994e-13
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 2428 HFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
               W+S    YGFIS   ++ +KDIFVH  +IA          +L D EEVLFD+VEG  G EA NVTGPNG +V+G
Sbjct:   69 KVKWYSVLRRYGFIS--RNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIG 143          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 66.6254 bits (161), Expect = 1.889e-11
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 2383 FLELNVIMNQSKVIE-----HFNWFSSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
              +L   +   KVIE     H  WFS +  YGF++ D   + ++D FVH  +I   +       +L D E V+FDIVEG KG EA NVTGP+G +V G
Sbjct:   72 MKKLEEDLASKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRG 169          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 66.6254 bits (161), Expect = 1.889e-11
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 2383 FLELNVIMNQSKVIE-----HFNWFSSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
              +L   +   KVIE     H  WFS +  YGF++ D   + ++D FVH  +I   +       +L D E V+FDIVEG KG EA NVTGP+G +V G
Sbjct:   72 MKKLEEDLASKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRG 169          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 63.929 bits (154), Expect = 8.132e-11
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 2428 HFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
               W+S    YGFIS    + +KD+FVH  +I+  +       +LAD EEVLFD+V+G  G EA NVTGP G +V G     Q
Sbjct:   67 KVKWYSVLRRYGFIS--RSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKYRHQ 147          
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 65.855 bits (159), Expect = 6.197e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV     WF+ K+GYGFI  + +++ +D+FVH  +IA  N      S+ DGE V FD+V G KG EA NVTGP+ G+ V G+Q+
Sbjct:   60 TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS-GEPVRGSQF 141          
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 65.855 bits (159), Expect = 6.628e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV     WF+ K+GYGFI  + +++ +D+FVH  +IA  N      S+ DGE V FD+V G KG EA NVTGP+ G+ V G+Q+
Sbjct:   60 TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS-GEPVRGSQF 141          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.4034 bits (176), Expect = 3.712e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.4034 bits (176), Expect = 3.712e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.0182 bits (175), Expect = 4.833e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 54.6842 bits (130), Expect = 6.187e-8
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query: 2434 NWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GF+S+ +      +S  D+FVH   +      SL +GE V F     +KGLE+  VTGP G   VG
Sbjct:   33 KWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVG 107          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 54.299 bits (129), Expect = 1.055e-7
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query: 2434 NWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GF+S+ +      +S  D+FVH   +      SL +GE V F     +KGLE+  VTGP G   VG
Sbjct:   31 KWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVG 105          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 72.4034 bits (176), Expect = 5.853e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   35 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 116          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 72.0182 bits (175), Expect = 9.068e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   43 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 124          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 68.1662 bits (165), Expect = 6.039e-12
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+V G KG EA NVTGP G  V G
Sbjct:   34 TKVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQG 112          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: usp20 (ubiquitin specific peptidase 20 [Source:Xenbase;Acc:XB-GENE-966528])

HSP 1 Score: 52.373 bits (124), Expect = 5.413e-7
Identity = 25/75 (33.33%), Postives = 39/75 (52.00%), Query Frame = 1
Query: 2434 NWFSSKNGYGFISVDNDN-----SDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GF+++         +  D+FVH   +      SL +GE V F   + +KGLE+  VTGP G   +G
Sbjct:   32 KWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIG 106          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 53.9138 bits (128), Expect = 5.495e-7
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 1
Query: 2428 HFNWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            H  WF+ + G+GFIS+ +          D+FVH   +      SL +GE V F   + +KG E+  VTGP G   +G
Sbjct:   60 HCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLG 136          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 72.0182 bits (175), Expect = 5.894e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 71.2478 bits (173), Expect = 9.074e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 159          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 70.4774 bits (171), Expect = 1.342e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   17 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVKGSRY 97          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 71.633 bits (174), Expect = 1.428e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 159          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 70.8626 bits (172), Expect = 2.089e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   94 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVKGSRY 174          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|B5DE31|YBOX1_DANRE (Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.802e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P62961|YBOX1_RAT (Y-box-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ybx1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.123e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P62960|YBOX1_MOUSE (Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.123e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.334e-12
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            S+V     WF+ K+GYGFI  + D++ +D+FVH  +I   N      S+ DGE+V FD+VEG KG EA NVTGP G +V G
Sbjct:   31 SQVSGTVKWFNVKSGYGFI--NRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQG 109          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P67809|YBOX1_HUMAN (Y-box-binding protein 1 OS=Homo sapiens OX=9606 GN=YBX1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.365e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 138          
BLAST of Y box protein-1 vs. TrEMBL
Match: I1ZIB0 (Y box protein-1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.697e-34
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 1
Query: 2392 LNVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYE 2658
            +  IM  S+V  H  WFSSKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG  YE
Sbjct:   14 IXFIMTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYE 102          
BLAST of Y box protein-1 vs. TrEMBL
Match: E3LFG7 (CRE-CEY-1 protein OS=Caenorhabditis remanei OX=31234 GN=Cre-cey-1 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.945e-13
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97          
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A261AUY1 (CSD_1 domain-containing protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_17696 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-13
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97          
BLAST of Y box protein-1 vs. TrEMBL
Match: G0MVG4 (CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=135651 GN=Cbn-cey-1 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.394e-13
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97          
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3M7PA90 (Y-box factor-like protein OS=Brachionus plicatilis OX=10195 GN=BpHYR1_037785 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.307e-13
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
             KV     WF+ KNGYGFIS+D+   ++DIF+H   IA  N      S+ +GE+V FDIV+G KGLEA N+TGPN GD V G++Y
Sbjct:   35 QKVTGTVKWFNVKNGYGFISLDD--REEDIFIHHSGIARNNPKKQQKSVGEGEKVEFDIVQGEKGLEAANLTGPN-GDPVQGSKY 116          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 71.2478 bits (173), Expect = 7.822e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   38 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 119          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 66.6254 bits (161), Expect = 2.771e-11
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 2380 LFLELNVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            L  E  VI   + V     WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VE  KG EA NVTGP GG  V G++Y
Sbjct:   20 LPPERKVIA--TLVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGP-GGVPVKGSRY 110          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 66.2402 bits (160), Expect = 4.245e-11
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
              WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VE  KG EA NVTGP GG  V G++Y
Sbjct:   28 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGP-GGVPVKGSRY 103          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 55.0694 bits (131), Expect = 7.487e-8
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1
Query: 2428 HFNWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            H  WF+ + G+GFIS+ +   +      D+FVH   +      SL +GE V F   + +KGLE   VTGP G   VG
Sbjct:   32 HCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 108          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 55.0694 bits (131), Expect = 7.911e-8
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1
Query: 2428 HFNWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            H  WF+ + G+GFIS+ +      +   D+FVH   +      SL +GE V F   + +KGLE   VTGP G   VG
Sbjct:   40 HCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 116          
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 72.0182 bits (175), Expect = 2.203e-15
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV     WF+ KNGYGFI  + D++ +DIFVH  +IA  N      S+ DGE V F++V G KGLEA NVTGP+ G+ V G++Y
Sbjct:    6 TKVTGTVKWFNVKNGYGFI--NRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPD-GEPVQGSKY 87          
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 50.447 bits (119), Expect = 3.788e-6
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 2437 WFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQ 2652
            WF+   G+GFI+   D+  +D+FVH  +I A    SL +GE V   I    KG  A  VT P GG+V G ++
Sbjct:  489 WFNLIKGFGFIT--RDDGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGASR 558          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 71.2478 bits (173), Expect = 7.275e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   39 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVAVQGSKY 120          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 69.3218 bits (168), Expect = 7.727e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
              WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD++E AKG EA NVTGP GG  V G++Y
Sbjct:  116 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGP-GGIPVKGSRY 191          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 69.3218 bits (168), Expect = 8.306e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
              WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD++E AKG EA NVTGP GG  V G++Y
Sbjct:  116 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGP-GGIPVKGSRY 191          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 59.6918 bits (143), Expect = 2.213e-9
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1
Query: 2434 NWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GFIS+ N          D+FVH   +      SL +GE+V F   + +KGLE+  VTGP GG  VG
Sbjct:   38 KWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVG 112          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 59.6918 bits (143), Expect = 2.789e-9
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1
Query: 2434 NWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GFIS+ N          D+FVH   +      SL +GE+V F   + +KGLE+  VTGP GG  VG
Sbjct:   45 KWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVG 119          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058043.1 (SMESG000058043.1)

HSP 1 Score: 158.688 bits (400), Expect = 4.737e-45
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1
Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            M QS+V+ H  WF+SKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGA YEQ
Sbjct:    1 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAPYEQ 86          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058039.1 (SMESG000058039.1)

HSP 1 Score: 152.14 bits (383), Expect = 1.186e-42
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1
Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            M QS+V  H  WF+SKNGYGFISVDN+  DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ
Sbjct:    1 MAQSQVTGHVKWFNSKNGYGFISVDNERCDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 86          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058066.1 (SMESG000058066.1)

HSP 1 Score: 138.272 bits (347), Expect = 2.653e-37
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 1
Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYE 2658
            M  S+V  H  WFSSKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG  YE
Sbjct:    1 MTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYE 85          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058013.1 (SMESG000058013.1)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-32
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1
Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            M QS+VI H  WF+SKNGYGFISVDN+ +DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGP+GGDVVGGAQ++ 
Sbjct:    1 MAQSQVIGHVKWFNSKNGYGFISVDNERNDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPDGGDVVGGAQHDH 86          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000078868.1 (SMESG000078868.1)

HSP 1 Score: 112.079 bits (279), Expect = 1.924e-28
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 2395 NVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            N+I  ++KV  H  WF+SK+GYGFI  + D  D D+FVH  SI A NA SLADGEEV FD+V+G+KGLEARNVTGPNGGDVVGG  Y Q
Sbjct:    3 NII--ETKVNGHVKWFNSKSGYGFIRRE-DRKDSDVFVHHSSIVATNANSLADGEEVQFDVVQGSKGLEARNVTGPNGGDVVGGKPYFQ 88          
The following BLAST results are available for this feature:
BLAST of Y box protein-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
YBX19.089e-1347.06Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG... [more]
YBX22.226e-1246.43Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX22.226e-1246.43Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX32.234e-1246.91Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
YBX32.953e-1246.91Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
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BLAST of Y box protein-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cey-19.302e-1654.32C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62... [more]
cey-26.994e-1349.35C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
cey-41.889e-1140.82C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
cey-41.889e-1140.82C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
cey-38.132e-1143.37C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
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BLAST of Y box protein-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
yps6.197e-1145.88gene:FBgn0022959 transcript:FBtr0305992[more]
yps6.628e-1145.88gene:FBgn0022959 transcript:FBtr0076027[more]
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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx13.712e-1347.06Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx13.712e-1347.06Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx14.833e-1347.06Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
lin28a6.187e-837.33lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac... [more]
lin28a1.055e-737.33lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac... [more]
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BLAST of Y box protein-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
hmgcs15.853e-1347.063-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
hmgcs19.068e-1347.063-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
ybx36.039e-1245.68Y-box binding protein 3 [Source:NCBI gene;Acc:5485... [more]
usp205.413e-733.33ubiquitin specific peptidase 20 [Source:Xenbase;Ac... [more]
lin28b5.495e-735.06lin-28 homolog B [Source:NCBI gene;Acc:100216028][more]
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BLAST of Y box protein-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ybx15.894e-1347.06Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146][more]
Ybx39.074e-1346.91Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
Ybx21.342e-1246.43Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
Ybx31.428e-1246.91Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
Ybx22.089e-1246.43Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
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BLAST of Y box protein-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|B5DE31|YBOX1_DANRE2.802e-1247.06Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=... [more]
sp|P62961|YBOX1_RAT4.123e-1247.06Y-box-binding protein 1 OS=Rattus norvegicus OX=10... [more]
sp|P62960|YBOX1_MOUSE4.123e-1247.06Y-box-binding protein 1 OS=Mus musculus OX=10090 G... [more]
sp|P41824|YBOXH_APLCA4.334e-1248.15Y-box factor homolog OS=Aplysia californica OX=650... [more]
sp|P67809|YBOX1_HUMAN4.365e-1247.06Y-box-binding protein 1 OS=Homo sapiens OX=9606 GN... [more]
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BLAST of Y box protein-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1ZIB02.697e-3476.40Y box protein-1 (Fragment) OS=Schmidtea mediterran... [more]
E3LFG72.945e-1356.79CRE-CEY-1 protein OS=Caenorhabditis remanei OX=312... [more]
A0A261AUY12.965e-1356.79CSD_1 domain-containing protein (Fragment) OS=Caen... [more]
G0MVG44.394e-1356.79CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=13... [more]
A0A3M7PA909.307e-1351.76Y-box factor-like protein OS=Brachionus plicatilis... [more]
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BLAST of Y box protein-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx17.822e-1347.06Y-box binding protein 1 [Source:NCBI gene;Acc:1030... [more]
YBX22.771e-1143.75Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
YBX24.245e-1146.84Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
LIN28B7.487e-837.66protein lin-28 homolog A [Source:NCBI gene;Acc:103... [more]
LIN28B7.911e-837.66protein lin-28 homolog A [Source:NCBI gene;Acc:103... [more]
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BLAST of Y box protein-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Y box protein-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Y box protein-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO414692.203e-1549.41Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447033.788e-640.28Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Y box protein-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx17.275e-1347.06Y-box binding protein 1 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007880.27.727e-1246.84Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007875.28.306e-1246.84Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
lin28b2.213e-940.00lin-28 homolog B [Source:NCBI gene;Acc:101160951][more]
lin28b2.789e-940.00lin-28 homolog B [Source:NCBI gene;Acc:101160951][more]
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BLAST of Y box protein-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000058043.14.737e-4590.70SMESG000058043.1[more]
SMESG000058039.11.186e-4286.05SMESG000058039.1[more]
SMESG000058066.12.653e-3778.82SMESG000058066.1[more]
SMESG000058013.11.064e-3282.56SMESG000058013.1[more]
SMESG000078868.11.924e-2865.17SMESG000078868.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004532 ID=SMED30004532|Name=Y box protein-1|organism=Schmidtea mediterranea sexual|type=transcript|length=2961bp
CTTGTTTTTAGCATAATCTATTAAAATCTTGTAGTTTAAATACACTTAAA
ACTTGAATTTGTTAGATTTAAATCAAAAACAAGTTACTATATTATACCCT
ACAAAGACAGCGTAGTCATTCAGTATTTTTTATTGAATATAAAACAAATA
TTTTGACTAATGTCAGTGTTATTTCATACGAACATGTTAATAGTTATAAT
AATAAAATAACCCTAACCTTTTTTGAAAATTTTCTACTATAAATCTATTT
TGGAAGAACGATCCTCAATGAGCAGTTTTAGAACATAAATTGTCACATAA
CGAATCGACTTCGCATTAGAAAAAATCTACACCCCAGTATTTTATTTGTC
TCAGGTTCTCGTGATTCTTCTCTTAACTTCCAAAACATGGTTTTTGTTTT
AGTATATTGGTATCTTTGGGGAGTTTCATCTACCATATCATGTTATCCTT
CGTCTAACAAAAATACCAATGTATACACAGGTCATCGGGTGCTTTATCTG
GTGAAAATGATGTCTTCGATAACTTGGAAAAATTGACAATCGCTACTAAT
AGGATAATGAACGTCAAATAGTCAGAAAGAAACAATTACACTGCTCAGCA
AAATGAAGCATCACAGACAAAAATAAGCTCTTCTGAATGTATTTCTGATG
CTCAACCCAAATCTAGTTATAGTTTTGTTCTAGCACATAAAGTTTTTCGA
TTATTTACTTTTTTGTATTTTATGAAAATATACGTAATTTTATGAATATC
TAGGGTGTAATAAATCACATTTTATGCAAATTTATATAATTTATTTATAA
GAAGTAAAATATACATCATATACTAAATTAATGCATGACAATGAAGTGCA
AGCAACTAATTTACATATATTACAAGATCTTAATTAATGGTTATCGTCTT
TACTATGAATTTTATCGCATTAACGTTAGAATCAGTTGCTGAGGATATGA
GGATAATAAATTAGCTGGAGAGGGGCTATTCTTGGCCGCATTTGAACGCC
ATAAATTTTCCCATCGTTAATGAGAAAAAGGTGGTGGAAGTGTTTGTTGG
AGAGGATGGTCTGGATCTAATGAGATCACTGAAAGAGATCAAAGGAAAAG
TGAATGAAACAATAGTGCGACTCACACCACTTGGATGGACATGTGTAAGT
GTAAACACACTGGGGGTTTCCGTTCACTTATCAAACTAACTTTGTACAAA
CGTATTGCTCGAAGTATGATGAGTTAGTTTATCAAGTGAAAATCGAGGAT
CTTAAGGACAACAATGGAAGAGACGGAAACCAATTGAATACTGCCCCATT
TCCCAGCCGTGAGGCAGTGTAAGGATACGAAAGTTCGAATAGTGTTCTTA
GGTGACAGTTCAAGTTTTTGAGTAATGAAATAAGCATAGGTTTATTATTT
TCACATATTTAATTTAGCTTGTAGTTATAAGTTGATATTATATTTTCAAA
ACATTCACATTAAGAACTAAAAATCGTAAATATACCCACATAGCTTCACT
ACTTAATATATTTAAAACAAAATAATGAGAATCAAATTGAAACTATGAAT
GTATTTTTTTACAAATCAATTGAAATCATAGCTTTAAAACATGTAATGAA
CTTGCCAAGTTTGTCAAACCTCTTAAAAATGGACTTGTCCAGGTTATTGT
CGACAGATATTCTTTTTATTTCATTGATGCGTATCACCAGTTGTTTCTTG
TTTAATGATTTCAAAATAATCATTCAAATTCAACGATTATTTACGTCTTG
AATTAATCAAAAAGGAAAATATGACGGTATCACTGAAAAATCAACCTGGA
TGATGAGAGAAATATTTATTTAAAAAACCCAACCTTTTAAATAGATAAGG
TCTAAATAAAATTGAGAAAATGAATACTTATTTTAAACTTGGAAATTTTA
CTTGAAATCTCATTGGGTTTCAGGTGGAATTTTTTTATGAATATGTAACG
ATGAATCATGTCTAATCAATCCTTATTACGAGATGGATAAATTTGAATAT
AATGAATTTCAATTATTGAAATTTCAGACAGATCAACCACTCCTTTTAGC
ATTAAAAATGAAATTTAATATTAATAAAAATTATAGCTGTAAAACCAAAG
ACATGTTTTGGAGTACAGAATTCGTAGAACTTTCTAATGTTTAATTAATT
TCTCTAAATAAAGATAAAATTAAAGGTATAAAGAACTTGTCATGTCGCGT
CTGTGCGCACGATAGTTTTTATCGATTTAATTTCGAAAGCTTTTAAAATT
ATGTTTGTATCAAAAATTTTGGGAATTTTTGCGTTTAAGGTTTCTTTGTA
TTTTGGATTTGTGTTTGATTTATGAAATCGGATGTTTTATGAATTAAATT
GGAATTAATATATCTTTATGATTATTTAACTTTTCCTTGAATTAAATGTA
ATTATGAATCAATCTAAAGTTATTGAACATTTTAATTGGTTTAGCTCAAA
GAATGGATACGGATTCATCAGTGTTGATAATGATAATAGTGATAAAGATA
TATTCGTGCATTTTAAGTCAATTGCTGCTGGTAATGCAACTTCATTAGCT
GACGGTGAAGAAGTTCTCTTCGATATTGTTGAAGGTGCTAAGGGTCTTGA
AGCAAGAAACGTTACTGGACCAAATGGAGGCGATGTTGTTGGTGGCGCAC
AATATGAACAGAATAACGATAGATTTAACAACCGAGGAGGTGATAGAGAT
AATAGCAGATCTTATGGTAATCGTGATGGTGGTAATAGAAGAGATCAAGG
TGGATATGGTAATTATGGTGGTCGAAGAGAAGACAACTATTAATGGATTT
CAAGAGAATTGAAATTGTTTAGAATACTGCATTAAATTTAATAAATTTGT
GTAAATTTTTAAATTTGTTATTTTTACGTAGTGTTTATTTCTTAGTTAAA
AAATGATATTTTAAATTTATTTGTGTCTTTAACAGGATAAAGGAAACAGT
TTATTTAAAGC
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protein sequence of SMED30004532-orf-1

>SMED30004532-orf-1 ID=SMED30004532-orf-1|Name=SMED30004532-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=130bp
MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLAD
GEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQNNDRFNNRGGDRDN
SRSYGNRDGGNRRDQGGYGNYGGRREDNY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000028Category 2 cell
PLANA:0000099neuron
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0002142parenchyma
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR012340NA-bd_OB-fold
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding