Y box protein-1

Overview


Name	Y box protein-1
Smed ID	SMED30004532
Length (bp)	2961

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Y box protein-1 (SMED30004532) t-SNE clustered cells

Violin plots show distribution of expression levels for Y box protein-1 (SMED30004532) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Y box protein-1 (SMED30004532) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Y box protein-1 (SMED30004532) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004532

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 25

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30004532	SMESG000058043.1	SmedASXL_072287	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30004532	SMESG000058043.1	SmedASXL_072287	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30004532	SMESG000058013.1	SmedASXL_009658	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30004532	SMESG000058013.1	SmedASXL_009658	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30004532	SMESG000058043.1	SmedASXL_009659	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30004532	SMESG000058043.1	SmedASXL_009659	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30004532	SMESG000058013.1	dd_Smed_v4_35_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30004532	SMESG000058043.1 SMESG000040512.1 SMESG000003282.1	Contig31025	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30004532	SMESG000058043.1 SMESG000040512.1 SMESG000003282.1	Contig31025	newmark_ests	PMID:29674431 Fincher et al., 2018
gut	SMED30004532	SMESG000058043.1	SMED30004532	smed_20140614	PMID:26457503 Tu et al., 2015
parenchyma	SMED30004532	SMESG000058043.1	SMED30004532	smed_20140614	PMID:26457503 Tu et al., 2015
Category 2 cell	SMED30004532	SMESG000058043.1 SMESG000058013.1	dd_Smed_v6_35_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30004532	SMESG000058043.1 SMESG000058013.1	dd_Smed_v6_35_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30004532	SMESG000058039.1	SMED_04459_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 72.0182 bits (175), Expect = 9.089e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 138

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BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 71.2478 bits (173), Expect = 2.226e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1

Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPVKGSRY 173

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Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPVKGSRY 173

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BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 70.4774 bits (171), Expect = 2.234e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 167

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BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 71.2478 bits (173), Expect = 2.953e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 167

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BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 77.411 bits (189), Expect = 9.302e-16
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEV+FDIVEG+KGLEA +VTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQG 97

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BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 70.4774 bits (171), Expect = 6.994e-13
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1

Query: 2428 HFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
               W+S    YGFIS   ++ +KDIFVH  +IA          +L D EEVLFD+VEG  G EA NVTGPNG +V+G
Sbjct:   69 KVKWYSVLRRYGFIS--RNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIG 143

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BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 66.6254 bits (161), Expect = 1.889e-11
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1

Query: 2383 FLELNVIMNQSKVIE-----HFNWFSSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
              +L   +   KVIE     H  WFS +  YGF++ D   + ++D FVH  +I   +       +L D E V+FDIVEG KG EA NVTGP+G +V G
Sbjct:   72 MKKLEEDLASKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRG 169

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Query: 2383 FLELNVIMNQSKVIE-----HFNWFSSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
              +L   +   KVIE     H  WFS +  YGF++ D   + ++D FVH  +I   +       +L D E V+FDIVEG KG EA NVTGP+G +V G
Sbjct:   72 MKKLEEDLASKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRG 169

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BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 63.929 bits (154), Expect = 8.132e-11
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1

Query: 2428 HFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
               W+S    YGFIS    + +KD+FVH  +I+  +       +LAD EEVLFD+V+G  G EA NVTGP G +V G     Q
Sbjct:   67 KVKWYSVLRRYGFIS--RSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKYRHQ 147

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BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 65.855 bits (159), Expect = 6.197e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV     WF+ K+GYGFI  + +++ +D+FVH  +IA  N      S+ DGE V FD+V G KG EA NVTGP+ G+ V G+Q+
Sbjct:   60 TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS-GEPVRGSQF 141

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BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 65.855 bits (159), Expect = 6.628e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV     WF+ K+GYGFI  + +++ +D+FVH  +IA  N      S+ DGE V FD+V G KG EA NVTGP+ G+ V G+Q+
Sbjct:   60 TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS-GEPVRGSQF 141

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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.4034 bits (176), Expect = 3.712e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118

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Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118

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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.0182 bits (175), Expect = 4.833e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118

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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 54.6842 bits (130), Expect = 6.187e-8
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1

Query: 2434 NWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GF+S+ +      +S  D+FVH   +      SL +GE V F     +KGLE+  VTGP G   VG
Sbjct:   33 KWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVG 107

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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 54.299 bits (129), Expect = 1.055e-7
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1

Query: 2434 NWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GF+S+ +      +S  D+FVH   +      SL +GE V F     +KGLE+  VTGP G   VG
Sbjct:   31 KWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVG 105

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BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 72.4034 bits (176), Expect = 5.853e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   35 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 116

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BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 72.0182 bits (175), Expect = 9.068e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   43 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 124

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BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 68.1662 bits (165), Expect = 6.039e-12
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+V G KG EA NVTGP G  V G
Sbjct:   34 TKVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQG 112

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BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: usp20 (ubiquitin specific peptidase 20 [Source:Xenbase;Acc:XB-GENE-966528])

HSP 1 Score: 52.373 bits (124), Expect = 5.413e-7
Identity = 25/75 (33.33%), Postives = 39/75 (52.00%), Query Frame = 1

Query: 2434 NWFSSKNGYGFISVDNDN-----SDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GF+++         +  D+FVH   +      SL +GE V F   + +KGLE+  VTGP G   +G
Sbjct:   32 KWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIG 106

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BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 53.9138 bits (128), Expect = 5.495e-7
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 1

Query: 2428 HFNWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            H  WF+ + G+GFIS+ +          D+FVH   +      SL +GE V F   + +KG E+  VTGP G   +G
Sbjct:   60 HCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLG 136

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BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 72.0182 bits (175), Expect = 5.894e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136

[Close]

BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 71.2478 bits (173), Expect = 9.074e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 159

[Close]

BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 70.4774 bits (171), Expect = 1.342e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1

Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   17 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVKGSRY 97

[Close]

BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 71.633 bits (174), Expect = 1.428e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP+G  V G
Sbjct:   81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 159

[Close]

BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 70.8626 bits (172), Expect = 2.089e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1

Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +V+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   94 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVKGSRY 174

[Close]

BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|B5DE31|YBOX1_DANRE (Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.802e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118

[Close]

BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P62961|YBOX1_RAT (Y-box-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ybx1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.123e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136

[Close]

BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P62960|YBOX1_MOUSE (Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.123e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136

[Close]

BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.334e-12
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            S+V     WF+ K+GYGFI  + D++ +D+FVH  +I   N      S+ DGE+V FD+VEG KG EA NVTGP G +V G
Sbjct:   31 SQVSGTVKWFNVKSGYGFI--NRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQG 109

[Close]

BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P67809|YBOX1_HUMAN (Y-box-binding protein 1 OS=Homo sapiens OX=9606 GN=YBX1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.365e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 138

[Close]

BLAST of Y box protein-1 vs. TrEMBL
Match: I1ZIB0 (Y box protein-1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.697e-34
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 1

Query: 2392 LNVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYE 2658
            +  IM  S+V  H  WFSSKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG  YE
Sbjct:   14 IXFIMTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYE 102

[Close]

BLAST of Y box protein-1 vs. TrEMBL
Match: E3LFG7 (CRE-CEY-1 protein OS=Caenorhabditis remanei OX=31234 GN=Cre-cey-1 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.945e-13
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97

[Close]

BLAST of Y box protein-1 vs. TrEMBL
Match: A0A261AUY1 (CSD_1 domain-containing protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_17696 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-13
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97

[Close]

BLAST of Y box protein-1 vs. TrEMBL
Match: G0MVG4 (CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=135651 GN=Cbn-cey-1 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.394e-13
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            +KV     WF+ KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVTGP+GG V G
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97

[Close]

BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3M7PA90 (Y-box factor-like protein OS=Brachionus plicatilis OX=10195 GN=BpHYR1_037785 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.307e-13
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
             KV     WF+ KNGYGFIS+D+   ++DIF+H   IA  N      S+ +GE+V FDIV+G KGLEA N+TGPN GD V G++Y
Sbjct:   35 QKVTGTVKWFNVKNGYGFISLDD--REEDIFIHHSGIARNNPKKQQKSVGEGEKVEFDIVQGEKGLEAANLTGPN-GDPVQGSKY 116

[Close]

BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 71.2478 bits (173), Expect = 7.822e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   38 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 119

[Close]

BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 66.6254 bits (161), Expect = 2.771e-11
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1

Query: 2380 LFLELNVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            L  E  VI   + V     WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VE  KG EA NVTGP GG  V G++Y
Sbjct:   20 LPPERKVIA--TLVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGP-GGVPVKGSRY 110

[Close]

BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 66.2402 bits (160), Expect = 4.245e-11
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1

Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
              WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VE  KG EA NVTGP GG  V G++Y
Sbjct:   28 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGP-GGVPVKGSRY 103

[Close]

BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 55.0694 bits (131), Expect = 7.487e-8
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1

Query: 2428 HFNWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            H  WF+ + G+GFIS+ +   +      D+FVH   +      SL +GE V F   + +KGLE   VTGP G   VG
Sbjct:   32 HCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 108

[Close]

BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 55.0694 bits (131), Expect = 7.911e-8
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1

Query: 2428 HFNWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
            H  WF+ + G+GFIS+ +      +   D+FVH   +      SL +GE V F   + +KGLE   VTGP G   VG
Sbjct:   40 HCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 116

[Close]

BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 72.0182 bits (175), Expect = 2.203e-15
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV     WF+ KNGYGFI  + D++ +DIFVH  +IA  N      S+ DGE V F++V G KGLEA NVTGP+ G+ V G++Y
Sbjct:    6 TKVTGTVKWFNVKNGYGFI--NRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPD-GEPVQGSKY 87

[Close]

BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 50.447 bits (119), Expect = 3.788e-6
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1

Query: 2437 WFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQ 2652
            WF+   G+GFI+   D+  +D+FVH  +I A    SL +GE V   I    KG  A  VT P GG+V G ++
Sbjct:  489 WFNLIKGFGFIT--RDDGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGASR 558

[Close]

BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 71.2478 bits (173), Expect = 7.275e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1

Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
            +KV+    WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVTGP GG  V G++Y
Sbjct:   39 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVAVQGSKY 120

[Close]

BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 69.3218 bits (168), Expect = 7.727e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
              WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD++E AKG EA NVTGP GG  V G++Y
Sbjct:  116 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGP-GGIPVKGSRY 191

[Close]

BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 69.3218 bits (168), Expect = 8.306e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655
              WF+ +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD++E AKG EA NVTGP GG  V G++Y
Sbjct:  116 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGP-GGIPVKGSRY 191

[Close]

BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 59.6918 bits (143), Expect = 2.213e-9
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1

Query: 2434 NWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GFIS+ N          D+FVH   +      SL +GE+V F   + +KGLE+  VTGP GG  VG
Sbjct:   38 KWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVG 112

[Close]

BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 59.6918 bits (143), Expect = 2.789e-9
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1

Query: 2434 NWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643
             WF+ + G+GFIS+ N          D+FVH   +      SL +GE+V F   + +KGLE+  VTGP GG  VG
Sbjct:   45 KWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVG 119

[Close]

BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058043.1 (SMESG000058043.1)

HSP 1 Score: 158.688 bits (400), Expect = 4.737e-45
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            M QS+V+ H  WF+SKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGA YEQ
Sbjct:    1 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAPYEQ 86

[Close]

BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058039.1 (SMESG000058039.1)

HSP 1 Score: 152.14 bits (383), Expect = 1.186e-42
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            M QS+V  H  WF+SKNGYGFISVDN+  DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ
Sbjct:    1 MAQSQVTGHVKWFNSKNGYGFISVDNERCDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 86

[Close]

BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058066.1 (SMESG000058066.1)

HSP 1 Score: 138.272 bits (347), Expect = 2.653e-37
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 1

Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYE 2658
            M  S+V  H  WFSSKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG  YE
Sbjct:    1 MTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYE 85

[Close]

BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058013.1 (SMESG000058013.1)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-32
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            M QS+VI H  WF+SKNGYGFISVDN+ +DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGP+GGDVVGGAQ++ 
Sbjct:    1 MAQSQVIGHVKWFNSKNGYGFISVDNERNDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPDGGDVVGGAQHDH 86

[Close]

BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000078868.1 (SMESG000078868.1)

HSP 1 Score: 112.079 bits (279), Expect = 1.924e-28
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1

Query: 2395 NVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661
            N+I  ++KV  H  WF+SK+GYGFI  + D  D D+FVH  SI A NA SLADGEEV FD+V+G+KGLEARNVTGPNGGDVVGG  Y Q
Sbjct:    3 NII--ETKVNGHVKWFNSKSGYGFIRRE-DRKDSDVFVHHSSIVATNANSLADGEEVQFDVVQGSKGLEARNVTGPNGGDVVGGKPYFQ 88

The following BLAST results are available for this feature:

BLAST of Y box protein-1 vs. Ensembl Human
BLAST of Y box protein-1 vs. Ensembl Celegans
BLAST of Y box protein-1 vs. Ensembl Fly
BLAST of Y box protein-1 vs. Ensembl Zebrafish
BLAST of Y box protein-1 vs. Ensembl Xenopus
BLAST of Y box protein-1 vs. Ensembl Mouse
BLAST of Y box protein-1 vs. UniProt/SwissProt
BLAST of Y box protein-1 vs. TrEMBL
BLAST of Y box protein-1 vs. Ensembl Cavefish
BLAST of Y box protein-1 vs. Ensembl Sea Lamprey
BLAST of Y box protein-1 vs. Ensembl Yeast
BLAST of Y box protein-1 vs. Ensembl Nematostella
BLAST of Y box protein-1 vs. Ensembl Medaka
BLAST of Y box protein-1 vs. Planmine SMEST

BLAST of Y box protein-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
YBX1	9.089e-13	47.06	Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG...	[more]
YBX2	2.226e-12	46.43	Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG...	[more]
YBX2	2.226e-12	46.43	Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG...	[more]
YBX3	2.234e-12	46.91	Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG...	[more]
YBX3	2.953e-12	46.91	Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of Y box protein-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cey-1	9.302e-16	54.32	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62...	[more]
cey-2	6.994e-13	49.35	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-4	1.889e-11	40.82	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E...	[more]
cey-4	1.889e-11	40.82	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E...	[more]
cey-3	8.132e-11	43.37	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]

BLAST of Y box protein-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
yps	6.197e-11	45.88	gene:FBgn0022959 transcript:FBtr0305992	[more]
yps	6.628e-11	45.88	gene:FBgn0022959 transcript:FBtr0076027	[more]

BLAST of Y box protein-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx1	3.712e-13	47.06	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
ybx1	3.712e-13	47.06	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
ybx1	4.833e-13	47.06	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
lin28a	6.187e-8	37.33	lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac...	[more]
lin28a	1.055e-7	37.33	lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac...	[more]

BLAST of Y box protein-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
hmgcs1	5.853e-13	47.06	3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:...	[more]
hmgcs1	9.068e-13	47.06	3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:...	[more]
ybx3	6.039e-12	45.68	Y-box binding protein 3 [Source:NCBI gene;Acc:5485...	[more]
usp20	5.413e-7	33.33	ubiquitin specific peptidase 20 [Source:Xenbase;Ac...	[more]
lin28b	5.495e-7	35.06	lin-28 homolog B [Source:NCBI gene;Acc:100216028]	[more]

BLAST of Y box protein-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ybx1	5.894e-13	47.06	Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]	[more]
Ybx3	9.074e-13	46.91	Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670...	[more]
Ybx2	1.342e-12	46.43	Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372...	[more]
Ybx3	1.428e-12	46.91	Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670...	[more]
Ybx2	2.089e-12	46.43	Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372...	[more]

BLAST of Y box protein-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|B5DE31\|YBOX1_DANRE	2.802e-12	47.06	Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=...	[more]
sp\|P62961\|YBOX1_RAT	4.123e-12	47.06	Y-box-binding protein 1 OS=Rattus norvegicus OX=10...	[more]
sp\|P62960\|YBOX1_MOUSE	4.123e-12	47.06	Y-box-binding protein 1 OS=Mus musculus OX=10090 G...	[more]
sp\|P41824\|YBOXH_APLCA	4.334e-12	48.15	Y-box factor homolog OS=Aplysia californica OX=650...	[more]
sp\|P67809\|YBOX1_HUMAN	4.365e-12	47.06	Y-box-binding protein 1 OS=Homo sapiens OX=9606 GN...	[more]

BLAST of Y box protein-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
I1ZIB0	2.697e-34	76.40	Y box protein-1 (Fragment) OS=Schmidtea mediterran...	[more]
E3LFG7	2.945e-13	56.79	CRE-CEY-1 protein OS=Caenorhabditis remanei OX=312...	[more]
A0A261AUY1	2.965e-13	56.79	CSD_1 domain-containing protein (Fragment) OS=Caen...	[more]
G0MVG4	4.394e-13	56.79	CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=13...	[more]
A0A3M7PA90	9.307e-13	51.76	Y-box factor-like protein OS=Brachionus plicatilis...	[more]

BLAST of Y box protein-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx1	7.822e-13	47.06	Y-box binding protein 1 [Source:NCBI gene;Acc:1030...	[more]
YBX2	2.771e-11	43.75	Y-box-binding protein 2-A-like [Source:NCBI gene;A...	[more]
YBX2	4.245e-11	46.84	Y-box-binding protein 2-A-like [Source:NCBI gene;A...	[more]
LIN28B	7.487e-8	37.66	protein lin-28 homolog A [Source:NCBI gene;Acc:103...	[more]
LIN28B	7.911e-8	37.66	protein lin-28 homolog A [Source:NCBI gene;Acc:103...	[more]

BLAST of Y box protein-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Y box protein-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Y box protein-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO41469	2.203e-15	49.41	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44703	3.788e-6	40.28	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Y box protein-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx1	7.275e-13	47.06	Y-box binding protein 1 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000007880.2	7.727e-12	46.84	Y-box binding protein 2 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000007875.2	8.306e-12	46.84	Y-box binding protein 2 [Source:NCBI gene;Acc:1000...	[more]
lin28b	2.213e-9	40.00	lin-28 homolog B [Source:NCBI gene;Acc:101160951]	[more]
lin28b	2.789e-9	40.00	lin-28 homolog B [Source:NCBI gene;Acc:101160951]	[more]

BLAST of Y box protein-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000058043.1	4.737e-45	90.70	SMESG000058043.1	[more]
SMESG000058039.1	1.186e-42	86.05	SMESG000058039.1	[more]
SMESG000058066.1	2.653e-37	78.82	SMESG000058066.1	[more]
SMESG000058013.1	1.064e-32	82.56	SMESG000058013.1	[more]
SMESG000078868.1	1.924e-28	65.17	SMESG000078868.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004532 ID=SMED30004532|Name=Y box protein-1|organism=Schmidtea mediterranea sexual|type=transcript|length=2961bp
CTTGTTTTTAGCATAATCTATTAAAATCTTGTAGTTTAAATACACTTAAA
ACTTGAATTTGTTAGATTTAAATCAAAAACAAGTTACTATATTATACCCT
ACAAAGACAGCGTAGTCATTCAGTATTTTTTATTGAATATAAAACAAATA
TTTTGACTAATGTCAGTGTTATTTCATACGAACATGTTAATAGTTATAAT
AATAAAATAACCCTAACCTTTTTTGAAAATTTTCTACTATAAATCTATTT
TGGAAGAACGATCCTCAATGAGCAGTTTTAGAACATAAATTGTCACATAA
CGAATCGACTTCGCATTAGAAAAAATCTACACCCCAGTATTTTATTTGTC
TCAGGTTCTCGTGATTCTTCTCTTAACTTCCAAAACATGGTTTTTGTTTT
AGTATATTGGTATCTTTGGGGAGTTTCATCTACCATATCATGTTATCCTT
CGTCTAACAAAAATACCAATGTATACACAGGTCATCGGGTGCTTTATCTG
GTGAAAATGATGTCTTCGATAACTTGGAAAAATTGACAATCGCTACTAAT
AGGATAATGAACGTCAAATAGTCAGAAAGAAACAATTACACTGCTCAGCA
AAATGAAGCATCACAGACAAAAATAAGCTCTTCTGAATGTATTTCTGATG
CTCAACCCAAATCTAGTTATAGTTTTGTTCTAGCACATAAAGTTTTTCGA
TTATTTACTTTTTTGTATTTTATGAAAATATACGTAATTTTATGAATATC
TAGGGTGTAATAAATCACATTTTATGCAAATTTATATAATTTATTTATAA
GAAGTAAAATATACATCATATACTAAATTAATGCATGACAATGAAGTGCA
AGCAACTAATTTACATATATTACAAGATCTTAATTAATGGTTATCGTCTT
TACTATGAATTTTATCGCATTAACGTTAGAATCAGTTGCTGAGGATATGA
GGATAATAAATTAGCTGGAGAGGGGCTATTCTTGGCCGCATTTGAACGCC
ATAAATTTTCCCATCGTTAATGAGAAAAAGGTGGTGGAAGTGTTTGTTGG
AGAGGATGGTCTGGATCTAATGAGATCACTGAAAGAGATCAAAGGAAAAG
TGAATGAAACAATAGTGCGACTCACACCACTTGGATGGACATGTGTAAGT
GTAAACACACTGGGGGTTTCCGTTCACTTATCAAACTAACTTTGTACAAA
CGTATTGCTCGAAGTATGATGAGTTAGTTTATCAAGTGAAAATCGAGGAT
CTTAAGGACAACAATGGAAGAGACGGAAACCAATTGAATACTGCCCCATT
TCCCAGCCGTGAGGCAGTGTAAGGATACGAAAGTTCGAATAGTGTTCTTA
GGTGACAGTTCAAGTTTTTGAGTAATGAAATAAGCATAGGTTTATTATTT
TCACATATTTAATTTAGCTTGTAGTTATAAGTTGATATTATATTTTCAAA
ACATTCACATTAAGAACTAAAAATCGTAAATATACCCACATAGCTTCACT
ACTTAATATATTTAAAACAAAATAATGAGAATCAAATTGAAACTATGAAT
GTATTTTTTTACAAATCAATTGAAATCATAGCTTTAAAACATGTAATGAA
CTTGCCAAGTTTGTCAAACCTCTTAAAAATGGACTTGTCCAGGTTATTGT
CGACAGATATTCTTTTTATTTCATTGATGCGTATCACCAGTTGTTTCTTG
TTTAATGATTTCAAAATAATCATTCAAATTCAACGATTATTTACGTCTTG
AATTAATCAAAAAGGAAAATATGACGGTATCACTGAAAAATCAACCTGGA
TGATGAGAGAAATATTTATTTAAAAAACCCAACCTTTTAAATAGATAAGG
TCTAAATAAAATTGAGAAAATGAATACTTATTTTAAACTTGGAAATTTTA
CTTGAAATCTCATTGGGTTTCAGGTGGAATTTTTTTATGAATATGTAACG
ATGAATCATGTCTAATCAATCCTTATTACGAGATGGATAAATTTGAATAT
AATGAATTTCAATTATTGAAATTTCAGACAGATCAACCACTCCTTTTAGC
ATTAAAAATGAAATTTAATATTAATAAAAATTATAGCTGTAAAACCAAAG
ACATGTTTTGGAGTACAGAATTCGTAGAACTTTCTAATGTTTAATTAATT
TCTCTAAATAAAGATAAAATTAAAGGTATAAAGAACTTGTCATGTCGCGT
CTGTGCGCACGATAGTTTTTATCGATTTAATTTCGAAAGCTTTTAAAATT
ATGTTTGTATCAAAAATTTTGGGAATTTTTGCGTTTAAGGTTTCTTTGTA
TTTTGGATTTGTGTTTGATTTATGAAATCGGATGTTTTATGAATTAAATT
GGAATTAATATATCTTTATGATTATTTAACTTTTCCTTGAATTAAATGTA
ATTATGAATCAATCTAAAGTTATTGAACATTTTAATTGGTTTAGCTCAAA
GAATGGATACGGATTCATCAGTGTTGATAATGATAATAGTGATAAAGATA
TATTCGTGCATTTTAAGTCAATTGCTGCTGGTAATGCAACTTCATTAGCT
GACGGTGAAGAAGTTCTCTTCGATATTGTTGAAGGTGCTAAGGGTCTTGA
AGCAAGAAACGTTACTGGACCAAATGGAGGCGATGTTGTTGGTGGCGCAC
AATATGAACAGAATAACGATAGATTTAACAACCGAGGAGGTGATAGAGAT
AATAGCAGATCTTATGGTAATCGTGATGGTGGTAATAGAAGAGATCAAGG
TGGATATGGTAATTATGGTGGTCGAAGAGAAGACAACTATTAATGGATTT
CAAGAGAATTGAAATTGTTTAGAATACTGCATTAAATTTAATAAATTTGT
GTAAATTTTTAAATTTGTTATTTTTACGTAGTGTTTATTTCTTAGTTAAA
AAATGATATTTTAAATTTATTTGTGTCTTTAACAGGATAAAGGAAACAGT
TTATTTAAAGC

protein sequence of SMED30004532-orf-1

>SMED30004532-orf-1 ID=SMED30004532-orf-1|Name=SMED30004532-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=130bp
MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLAD
GEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQNNDRFNNRGGDRDN
SRSYGNRDGGNRRDQGGYGNYGGRREDNY*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000020	protonephridia
PLANA:0000026	gut
PLANA:0000028	Category 2 cell
PLANA:0000099	neuron
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell
PLANA:0002142	parenchyma

Vocabulary: **INTERPRO**
Term	Definition
IPR002059	CSP_DNA-bd
IPR011129	CSD
IPR012340	NA-bd_OB-fold

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding
GO:0003676	nucleic acid binding

Main menu

Y box protein-1

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 25

Owlery

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