Y box protein-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004532 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 25Note: Hover over icons to view figure legend
Homology
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014]) HSP 1 Score: 72.0182 bits (175), Expect = 9.089e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 138
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948]) HSP 1 Score: 71.2478 bits (173), Expect = 2.226e-12 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +V+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPVKGSRY 173
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948]) HSP 1 Score: 71.2478 bits (173), Expect = 2.226e-12 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +V+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPVKGSRY 173
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428]) HSP 1 Score: 70.4774 bits (171), Expect = 2.234e-12 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP+G V G Sbjct: 89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 167
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428]) HSP 1 Score: 71.2478 bits (173), Expect = 2.953e-12 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP+G V G Sbjct: 89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 167
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213]) HSP 1 Score: 77.411 bits (189), Expect = 9.302e-16 Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV WF+ KNGYGFI+ + N +DIFVH +I N SL D EEV+FDIVEG+KGLEA +VTGP+GG V G Sbjct: 19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQG 97
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306]) HSP 1 Score: 70.4774 bits (171), Expect = 6.994e-13 Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 2428 HFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 W+S YGFIS ++ +KDIFVH +IA +L D EEVLFD+VEG G EA NVTGPNG +V+G Sbjct: 69 KVKWYSVLRRYGFIS--RNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIG 143
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3]) HSP 1 Score: 66.6254 bits (161), Expect = 1.889e-11 Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1 Query: 2383 FLELNVIMNQSKVIE-----HFNWFSSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +L + KVIE H WFS + YGF++ D + ++D FVH +I + +L D E V+FDIVEG KG EA NVTGP+G +V G Sbjct: 72 MKKLEEDLASKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRG 169
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3]) HSP 1 Score: 66.6254 bits (161), Expect = 1.889e-11 Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1 Query: 2383 FLELNVIMNQSKVIE-----HFNWFSSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +L + KVIE H WFS + YGF++ D + ++D FVH +I + +L D E V+FDIVEG KG EA NVTGP+G +V G Sbjct: 72 MKKLEEDLASKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRG 169
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398]) HSP 1 Score: 63.929 bits (154), Expect = 8.132e-11 Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 2428 HFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661 W+S YGFIS + +KD+FVH +I+ + +LAD EEVLFD+V+G G EA NVTGP G +V G Q Sbjct: 67 KVKWYSVLRRYGFIS--RSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKYRHQ 147
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992) HSP 1 Score: 65.855 bits (159), Expect = 6.197e-11 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV WF+ K+GYGFI + +++ +D+FVH +IA N S+ DGE V FD+V G KG EA NVTGP+ G+ V G+Q+ Sbjct: 60 TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS-GEPVRGSQF 141
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027) HSP 1 Score: 65.855 bits (159), Expect = 6.628e-11 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV WF+ K+GYGFI + +++ +D+FVH +IA N S+ DGE V FD+V G KG EA NVTGP+ G+ V G+Q+ Sbjct: 60 TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS-GEPVRGSQF 141
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3]) HSP 1 Score: 72.4034 bits (176), Expect = 3.712e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3]) HSP 1 Score: 72.4034 bits (176), Expect = 3.712e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3]) HSP 1 Score: 72.0182 bits (175), Expect = 4.833e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066]) HSP 1 Score: 54.6842 bits (130), Expect = 6.187e-8 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1 Query: 2434 NWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 WF+ + G+GF+S+ + +S D+FVH + SL +GE V F +KGLE+ VTGP G VG Sbjct: 33 KWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVG 107
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066]) HSP 1 Score: 54.299 bits (129), Expect = 1.055e-7 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1 Query: 2434 NWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 WF+ + G+GF+S+ + +S D+FVH + SL +GE V F +KGLE+ VTGP G VG Sbjct: 31 KWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVG 105
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074]) HSP 1 Score: 72.4034 bits (176), Expect = 5.853e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 35 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 116
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074]) HSP 1 Score: 72.0182 bits (175), Expect = 9.068e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 43 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 124
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572]) HSP 1 Score: 68.1662 bits (165), Expect = 6.039e-12 Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+V G KG EA NVTGP G V G Sbjct: 34 TKVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQG 112
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: usp20 (ubiquitin specific peptidase 20 [Source:Xenbase;Acc:XB-GENE-966528]) HSP 1 Score: 52.373 bits (124), Expect = 5.413e-7 Identity = 25/75 (33.33%), Postives = 39/75 (52.00%), Query Frame = 1 Query: 2434 NWFSSKNGYGFISVDNDN-----SDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 WF+ + G+GF+++ + D+FVH + SL +GE V F + +KGLE+ VTGP G +G Sbjct: 32 KWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIG 106
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028]) HSP 1 Score: 53.9138 bits (128), Expect = 5.495e-7 Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 1 Query: 2428 HFNWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 H WF+ + G+GFIS+ + D+FVH + SL +GE V F + +KG E+ VTGP G +G Sbjct: 60 HCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLG 136
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]) HSP 1 Score: 72.0182 bits (175), Expect = 5.894e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670]) HSP 1 Score: 71.2478 bits (173), Expect = 9.074e-13 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP+G V G Sbjct: 81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 159
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372]) HSP 1 Score: 70.4774 bits (171), Expect = 1.342e-12 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +V+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 17 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVKGSRY 97
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670]) HSP 1 Score: 71.633 bits (174), Expect = 1.428e-12 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP+G V G Sbjct: 81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEG 159
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372]) HSP 1 Score: 70.8626 bits (172), Expect = 2.089e-12 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 2416 KVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +V+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 94 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVKGSRY 174
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|B5DE31|YBOX1_DANRE (Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.802e-12 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 118
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P62961|YBOX1_RAT (Y-box-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ybx1 PE=2 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 4.123e-12 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P62960|YBOX1_MOUSE (Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 4.123e-12 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 136
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.334e-12 Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 S+V WF+ K+GYGFI + D++ +D+FVH +I N S+ DGE+V FD+VEG KG EA NVTGP G +V G Sbjct: 31 SQVSGTVKWFNVKSGYGFI--NRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQG 109
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P67809|YBOX1_HUMAN (Y-box-binding protein 1 OS=Homo sapiens OX=9606 GN=YBX1 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 4.365e-12 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 138
BLAST of Y box protein-1 vs. TrEMBL
Match: I1ZIB0 (Y box protein-1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.697e-34 Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 2392 LNVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYE 2658 + IM S+V H WFSSKNGYGFISVD+DN+ KDIFVH SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG YE Sbjct: 14 IXFIMTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYE 102
BLAST of Y box protein-1 vs. TrEMBL
Match: E3LFG7 (CRE-CEY-1 protein OS=Caenorhabditis remanei OX=31234 GN=Cre-cey-1 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.945e-13 Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV WF+ KNGYGFI+ + N +DIFVH +I N SL D EEVLFDIVEG+KGLEA NVTGP+GG V G Sbjct: 19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A261AUY1 (CSD_1 domain-containing protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_17696 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-13 Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV WF+ KNGYGFI+ + N +DIFVH +I N SL D EEVLFDIVEG+KGLEA NVTGP+GG V G Sbjct: 19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97
BLAST of Y box protein-1 vs. TrEMBL
Match: G0MVG4 (CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=135651 GN=Cbn-cey-1 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.394e-13 Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 +KV WF+ KNGYGFI+ + N +DIFVH +I N SL D EEVLFDIVEG+KGLEA NVTGP+GG V G Sbjct: 19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQG 97
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3M7PA90 (Y-box factor-like protein OS=Brachionus plicatilis OX=10195 GN=BpHYR1_037785 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 9.307e-13 Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 KV WF+ KNGYGFIS+D+ ++DIF+H IA N S+ +GE+V FDIV+G KGLEA N+TGPN GD V G++Y Sbjct: 35 QKVTGTVKWFNVKNGYGFISLDD--REEDIFIHHSGIARNNPKKQQKSVGEGEKVEFDIVQGEKGLEAANLTGPN-GDPVQGSKY 116
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011]) HSP 1 Score: 71.2478 bits (173), Expect = 7.822e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 38 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVPVQGSKY 119
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193]) HSP 1 Score: 66.6254 bits (161), Expect = 2.771e-11 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 2380 LFLELNVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 L E VI + V WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VE KG EA NVTGP GG V G++Y Sbjct: 20 LPPERKVIA--TLVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGP-GGVPVKGSRY 110
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193]) HSP 1 Score: 66.2402 bits (160), Expect = 4.245e-11 Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VE KG EA NVTGP GG V G++Y Sbjct: 28 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGP-GGVPVKGSRY 103
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253]) HSP 1 Score: 55.0694 bits (131), Expect = 7.487e-8 Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1 Query: 2428 HFNWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 H WF+ + G+GFIS+ + + D+FVH + SL +GE V F + +KGLE VTGP G VG Sbjct: 32 HCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 108
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253]) HSP 1 Score: 55.0694 bits (131), Expect = 7.911e-8 Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1 Query: 2428 HFNWFSSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 H WF+ + G+GFIS+ + + D+FVH + SL +GE V F + +KGLE VTGP G VG Sbjct: 40 HCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 116
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475]) HSP 1 Score: 72.0182 bits (175), Expect = 2.203e-15 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV WF+ KNGYGFI + D++ +DIFVH +IA N S+ DGE V F++V G KGLEA NVTGP+ G+ V G++Y Sbjct: 6 TKVTGTVKWFNVKNGYGFI--NRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPD-GEPVQGSKY 87
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03]) HSP 1 Score: 50.447 bits (119), Expect = 3.788e-6 Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1 Query: 2437 WFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQ 2652 WF+ G+GFI+ D+ +D+FVH +I A SL +GE V I KG A VT P GG+V G ++ Sbjct: 489 WFNLIKGFGFIT--RDDGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGASR 558
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221]) HSP 1 Score: 71.2478 bits (173), Expect = 7.275e-13 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 2413 SKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 +KV+ WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD+VEG KG EA NVTGP GG V G++Y Sbjct: 39 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP-GGVAVQGSKY 120
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372]) HSP 1 Score: 69.3218 bits (168), Expect = 7.727e-12 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD++E AKG EA NVTGP GG V G++Y Sbjct: 116 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGP-GGIPVKGSRY 191
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372]) HSP 1 Score: 69.3218 bits (168), Expect = 8.306e-12 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 2431 FNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQY 2655 WF+ +NGYGFI + +++ +D+FVH +I N S+ DGE V FD++E AKG EA NVTGP GG V G++Y Sbjct: 116 VKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGP-GGIPVKGSRY 191
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951]) HSP 1 Score: 59.6918 bits (143), Expect = 2.213e-9 Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 2434 NWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 WF+ + G+GFIS+ N D+FVH + SL +GE+V F + +KGLE+ VTGP GG VG Sbjct: 38 KWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVG 112
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951]) HSP 1 Score: 59.6918 bits (143), Expect = 2.789e-9 Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 2434 NWFSSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVG 2643 WF+ + G+GFIS+ N D+FVH + SL +GE+V F + +KGLE+ VTGP GG VG Sbjct: 45 KWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVG 119
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058043.1 (SMESG000058043.1) HSP 1 Score: 158.688 bits (400), Expect = 4.737e-45 Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1 Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661 M QS+V+ H WF+SKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGA YEQ Sbjct: 1 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAPYEQ 86
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058039.1 (SMESG000058039.1) HSP 1 Score: 152.14 bits (383), Expect = 1.186e-42 Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1 Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661 M QS+V H WF+SKNGYGFISVDN+ DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ Sbjct: 1 MAQSQVTGHVKWFNSKNGYGFISVDNERCDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 86
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058066.1 (SMESG000058066.1) HSP 1 Score: 138.272 bits (347), Expect = 2.653e-37 Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 1 Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYE 2658 M S+V H WFSSKNGYGFISVD+DN+ KDIFVH SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG YE Sbjct: 1 MTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYE 85
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058013.1 (SMESG000058013.1) HSP 1 Score: 123.25 bits (308), Expect = 1.064e-32 Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1 Query: 2404 MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661 M QS+VI H WF+SKNGYGFISVDN+ +DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGP+GGDVVGGAQ++ Sbjct: 1 MAQSQVIGHVKWFNSKNGYGFISVDNERNDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPDGGDVVGGAQHDH 86
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000078868.1 (SMESG000078868.1) HSP 1 Score: 112.079 bits (279), Expect = 1.924e-28 Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1 Query: 2395 NVIMNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQ 2661 N+I ++KV H WF+SK+GYGFI + D D D+FVH SI A NA SLADGEEV FD+V+G+KGLEARNVTGPNGGDVVGG Y Q Sbjct: 3 NII--ETKVNGHVKWFNSKSGYGFIRRE-DRKDSDVFVHHSSIVATNANSLADGEEVQFDVVQGSKGLEARNVTGPNGGDVVGGKPYFQ 88 The following BLAST results are available for this feature:
BLAST of Y box protein-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Y box protein-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Y box protein-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Y box protein-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Y box protein-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Y box protein-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Y box protein-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Y box protein-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Y box protein-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Y box protein-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Y box protein-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Y box protein-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Y box protein-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004532 ID=SMED30004532|Name=Y box protein-1|organism=Schmidtea mediterranea sexual|type=transcript|length=2961bpback to top protein sequence of SMED30004532-orf-1 >SMED30004532-orf-1 ID=SMED30004532-orf-1|Name=SMED30004532-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=130bp MNQSKVIEHFNWFSSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADback to top Annotated Terms
The following terms have been associated with this transcript:
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