U2 small nuclear ribonucleoprotein B

Overview


Name	U2 small nuclear ribonucleoprotein B
Smed ID	SMED30004517
Length (bp)	783

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of U2 small nuclear ribonucleoprotein B (SMED30004517) t-SNE clustered cells

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein B (SMED30004517) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of U2 small nuclear ribonucleoprotein B (SMED30004517) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein B (SMED30004517) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004517

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30004517	h1SMcG0020817	SmedASXL_019477	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30004517	h1SMcG0020817	SmedASXL_019477	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30004517	h1SMcG0020817	dd_Smed_v4_2444_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30004517	h1SMcG0020817	dd_Smed_v4_2444_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30004517	h1SMcG0020817	dd_Smed_v4_2444_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30004517	h1SMcG0020817	dd_Smed_v4_2444_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPB2 (small nuclear ribonucleoprotein polypeptide B2 [Source:HGNC Symbol;Acc:HGNC:11155])

HSP 1 Score: 181.415 bits (459), Expect = 2.328e-56
Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +  K+++++K K                   VE T    N +  Q        Q      P          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

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Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +  K+++++K K                   VE T    N +  Q        Q      P          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 129.798 bits (325), Expect = 2.766e-37
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 129.798 bits (325), Expect = 3.525e-37
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 129.413 bits (324), Expect = 2.033e-35
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103

HSP 2 Score: 86.6557 bits (213), Expect = 2.188e-19
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:  210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2])

HSP 1 Score: 145.976 bits (367), Expect = 4.364e-43
Identity = 81/233 (34.76%), Postives = 126/233 (54.08%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            PNHT+YVNNLN+KVKK +LK+SL+ +F Q+G I+ +++ R   MRGQA I++K++ S++ A RALQ +  + KPM+I YA++DS  I+  KG                       V K   +  I  +       +     +  Q   Q         N LF SN+P+ T    +  +FSQF G REVR      D AF+EYE+E  ++ A+++ D F+I    ++ +++A+K
Sbjct:    6 PNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTF---------------------VEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2])

HSP 1 Score: 107.071 bits (266), Expect = 2.539e-28
Identity = 63/208 (30.29%), Postives = 103/208 (49.52%), Query Frame = 1

Query:  127 LFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            +F Q+G I+ +++ R   MRGQA I++K++ S++ A RALQ +  + KPM+I YA++DS  I+  KG                       V K   +  I  +       +     +  Q   Q         N LF SN+P+ T    +  +FSQF G REVR      D AF+EYE+E  ++ A+++ D F+I    ++ +++A+K
Sbjct:    2 VFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTF---------------------VEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 188

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-2 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:Q21322])

HSP 1 Score: 92.4337 bits (228), Expect = 1.133e-22
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            PN TLY+NNLN+K+K  +L+KSL  +F Q+G IV ++  R   MRGQA +I+K++ +++ A  AL  +  ++KPM+I +A++DS  + + KG
Sbjct:    6 PNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKG 97

HSP 2 Score: 65.4698 bits (158), Expect = 1.077e-12
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF +NLP   T  ML ++F+QF G +++R    R  +AFVE++T+  A  A+ + + F+I   H M+++YA K
Sbjct:  134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4])

HSP 1 Score: 58.151 bits (139), Expect = 1.046e-9
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1

Query:  520 TCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR-HSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHR--MKIEYA 744
             C+TLFV+NL  E  +  L  +F  F GF  +R H+     VAFVEY   ++A  A  S  GFQI  N R  ++IEYA
Sbjct:  226 ACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYA 303

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Query:  520 TCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR-HSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHR--MKIEYA 744
             C+TLFV+NL  E  +  L  +F  F GF  +R H+     VAFVEY   ++A  A  S  GFQI  N R  ++IEYA
Sbjct:  226 ACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYA 303

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: snf (gene:FBgn0003449 transcript:FBtr0070748)

HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-25
Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            ME  PN T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+A +   MRGQAF+I+K+I S++ A R +Q +  +DKPM+I Y+K DS  + ++KG
Sbjct:    1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKG 96

HSP 2 Score: 89.3521 bits (220), Expect = 3.080e-21
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+ TE Q+  AKE+  GF+I   H MKI +A K
Sbjct:  144 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: Sf3b6 (gene:FBgn0035692 transcript:FBtr0077015)

HSP 1 Score: 44.669 bits (104), Expect = 7.414e-6
Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 1

Query:   55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288
            N  LYV NL  K+   ++    Y +FG++G I  I     P  RG AF++Y+DI  +  A   L  + + ++ + + Y
Sbjct:   14 NRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 87

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2])

HSP 1 Score: 180.259 bits (456), Expect = 4.013e-56
Identity = 100/243 (41.15%), Postives = 148/243 (60.91%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I+DI+A +   MRGQAF+I+K++ ++T A R LQ +  ++KPM+I YAK DS  +++M+G   +        K+  E+      KK  G V T P  P    +TV + ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D++FVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVNTQPPPP----ATVQIPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220

[Close]

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I+DI+A +   MRGQAF+I+K++ ++T A R LQ +  ++KPM+I YAK DS  +++M+G   +        K+  E+      KK  G V T P  P    +TV + ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D++FVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVNTQPPPP----ATVQIPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 118.242 bits (295), Expect = 2.774e-32
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K+DS  I +MKG   E
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103

[Close]

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K+DS  I +MKG   E
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 119.013 bits (297), Expect = 1.163e-31
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K+DS  I +MKG   E
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103

HSP 2 Score: 85.8853 bits (211), Expect = 2.703e-19
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+E+  GF+I  ++ MKI +A K
Sbjct:  209 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 167.933 bits (424), Expect = 5.465e-51
Identity = 99/238 (41.60%), Postives = 143/238 (60.08%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAM-LTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NNL DKVKKP+LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ S+T A R LQ +  ++KPM+I YAK DS  I +MKG   +  K+++++K K + +      K    +  +        +            +Q  Q      N +   N   E T  M L+MLF+QF GF+EVR    R+D+AFVE+E E +A  A+++  GF+I  +H MKI YANK
Sbjct:    1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKKEKKKAKAQEQAANAANKKIGDLVFF----CFFLHYFASNANNAPGASQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 234

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 125.561 bits (314), Expect = 1.195e-34
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            M+ RPNHT+Y+NNL DKVKKP+LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ S+T A R LQ +  ++KPM+I YAK DS  I +MKG
Sbjct:    1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKG 96

HSP 2 Score: 90.1225 bits (222), Expect = 3.125e-21
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E E +A  A+++  GF+I  +H MKI YANK
Sbjct:  151 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 124.405 bits (311), Expect = 1.201e-33
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 1

Query:   28 FLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
             + V E RPN+T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K+I S+T A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    4 LMAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKG 103

HSP 2 Score: 87.0409 bits (214), Expect = 1.258e-19
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:  526 NTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+ES  GF+I  ++ MKI +A K
Sbjct:  206 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 280

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 124.02 bits (310), Expect = 1.636e-33
Identity = 55/99 (55.56%), Postives = 78/99 (78.79%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            + V E RPN+T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K+I S+T A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    1 MAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKG 99

HSP 2 Score: 87.0409 bits (214), Expect = 1.244e-19
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+ES  GF+I  ++ MKI +A K
Sbjct:  210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:548771])

HSP 1 Score: 50.447 bits (119), Expect = 1.526e-6
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 1

Query:   10 FRKYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK 294
             RK  VF       PN  LYV NL+ + ++ DLK    ++FG++          + DI   +   M+GQAFI +     +  A + +  Y L DKPM I +A+
Sbjct:  414 MRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLK----FIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFAR 512

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpb2 (U2 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:104805])

HSP 1 Score: 185.267 bits (469), Expect = 5.794e-58
Identity = 98/254 (38.58%), Postives = 142/254 (55.91%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE-----------------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +                 A+  +   +         G     P +P Y  + +                             LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYI-----------------------------LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56
Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 144.436 bits (363), Expect = 7.979e-42
Identity = 86/237 (36.29%), Postives = 128/237 (54.01%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR 618
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 243

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q9CQI7|RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus OX=10090 GN=Snrpb2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.053e-57
Identity = 98/254 (38.58%), Postives = 142/254 (55.91%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE-----------------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +                 A+  +   +         G     P +P Y  + +                             LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYI-----------------------------LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|P08579|RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens OX=9606 GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.118e-55
Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +  K+++++K K                   VE T    N +  Q        Q      P          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q62189|SNRPA_MOUSE (U1 small nuclear ribonucleoprotein A OS=Mus musculus OX=10090 GN=Snrpa PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.264e-55
Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q0DKM4|RU1A_ORYSJ (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.042e-36
Identity = 86/242 (35.54%), Postives = 133/242 (54.96%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA--------KKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGV-VKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            PN T+Y+NNLN+K+K  +LKKSL  +F Q+G I+D++A +    +GQA+++++D+ S+T A +++Q++   +KPM+I YA        K D T +   +   N+    + +++E+      VG+ V   P +  Y    +        Q+         + E I   N LFV NLP ETT  ML MLF Q+ GF+EVR    +  +AFVEY  E QA  A     GF+I  +++M I YA K
Sbjct:   21 PNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGV--YGAPPL-------SQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.042e-36
Identity = 86/242 (35.54%), Postives = 133/242 (54.96%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA--------KKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGV-VKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            PN T+Y+NNLN+K+K  +LKKSL  +F Q+G I+D++A +    +GQA+++++D+ S+T A +++Q++   +KPM+I YA        K D T +   +   N+    + +++E+      VG+ V   P +  Y    +        Q+         + E I   N LFV NLP ETT  ML MLF Q+ GF+EVR    +  +AFVEY  E QA  A     GF+I  +++M I YA K
Sbjct:   21 PNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGV--YGAPPL-------SQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A1S3WV66 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Erinaceus europaeus OX=9365 GN=SNRPA PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.150e-58
Identity = 104/248 (41.94%), Postives = 154/248 (62.10%), Query Frame = 1

Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXI--------VGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E  ++R++ K K +            VG   T P   +   S+ + +N                       + LF++NLP+ET++ ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAKGPGVGAPGTLPDSWLLFPSSQLSENP--------------------PNHILFLTNLPEETSELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 228

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0R3VVA3 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS1310 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.242e-57
Identity = 120/257 (46.69%), Postives = 156/257 (60.70%), Query Frame = 1

Query:   37 VMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIV---------------------GVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYA 744
            VM+ RPNHTLYVNNLNDKVKK DLK++LYYLF  YG +++IIA + P MRGQAFII++ + S+TTA R LQ +QLFDKPM+I YA+K+STQI  ++G+  E  K+++EE+EKR+R+K+                      G    TP     V S    Q D     +                  LFVSNLP+ETT AMLTMLF+QF GF+E R +     + FVEYETE QA  AK +Y GF++   H + + YA
Sbjct:  255 VMDIRPNHTLYVNNLNDKVKKADLKRALYYLFSPYGRVLEIIAMKTPKMRGQAFIIFQALTSATTALRVLQGFQLFDKPMRIQYARKNSTQIEVLQGVNAETQKKKEEEREKRRRRKLAQRQAAAAAAAAAAGGAGAVVNGQAGGTPPASSLVTSAFAFQVDGEVDTEPPN-------------RVLFVSNLPEETTDAMLTMLFNQFSGFKEARRAVG--GIGFVEYETEAQATAAKVTYHGFKLTRTHAISVTYA 496

HSP 2 Score: 100.523 bits (249), Expect = 2.444e-20
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            PNHT+Y+NNLN+K+K  +LKKSLY +F Q+G I+DII  ++  MRGQAF+++ +I S+ +A  A++ + L++KPM I++A+  S  I + +G
Sbjct:   34 PNHTIYINNLNEKIKTDELKKSLYAVFVQFGQILDIITGKSVKMRGQAFVVFSEISSARSALEAMRGFPLYEKPMCINFARTTSDIIAKREG 125

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0R3U5E1 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1938 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 6.155e-57
Identity = 120/255 (47.06%), Postives = 156/255 (61.18%), Query Frame = 1

Query:   22 LVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXI--------------VGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYA 744
             V    M+ RPNHTLYVNNLNDK+KK DLK++LYYLF  YG IVDIIA + P MRGQAFIIY+ I S+T A R LQ +QLF+KPM+I YA+K+S+QI  ++G+  E  K+++EE+EKR+R+K+              VG +  TP +   +E                           P    LFVSNLP+ETT AMLTMLF+QF GF+E R +     + FVEYETE QA  AK +Y GF++   H + + YA
Sbjct:  248 FVEFSTMDIRPNHTLYVNNLNDKLKKADLKRALYYLFSPYGRIVDIIAMKTPKMRGQAFIIYQSITSATNASRVLQGFQLFEKPMRIQYARKNSSQIEVLQGVNAETQKKKEEEREKRRRRKLAQRQAAAAAAAAAAVGQLGGTPGVDAEMEG-------------------------EPPNRVLFVSNLPEETTDAMLTMLFNQFSGFKEARRAVG--GIGFVEYETEAQASAAKLTYHGFKLTRTHAISVTYA 475

HSP 2 Score: 99.3673 bits (246), Expect = 4.593e-20
Identity = 42/92 (45.65%), Postives = 69/92 (75.00%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            PNHT+Y+NNLN+K+K  +LKKSLY +F Q+G I+DII  ++  MRGQAF+++ ++ S+ +A  A++ + L++KPM I++A+  S  I + +G
Sbjct:   34 PNHTIYINNLNEKIKTDELKKSLYAVFVQFGQILDIITGKSVKMRGQAFVVFSEVSSARSALEAMRGFPLYEKPMCINFARTTSDIIAKREG 125

HSP 3 Score: 59.6918 bits (143), Expect = 1.752e-6
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYET 663
            LF++NLP++  +AML MLF+ F GFRE+R    R+D+AFVE+ T
Sbjct:  210 LFLTNLPEDANEAMLGMLFAPFVGFREIRMVPSRHDIAFVEFST 253

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A2G9RGL5 (Uncharacterized protein OS=Lithobates catesbeianus OX=8400 GN=AB205_0145490 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.663e-56
Identity = 102/237 (43.04%), Postives = 148/237 (62.45%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NNLNDK+KK +LK+SLY LF Q+G ++DI+A +   MRGQAF+I+K++ SST A R LQ +  FDKPM+I YAK DS  +++M+G   +  K+++++K K + +      K    +P            Q                + P    LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E E QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTVYINNLNDKIKKDELKRSLYALFSQFGHVMDIVALKTTKMRGQAFVIFKELSSSTNALRQLQGFPFFDKPMRIQYAKSDSDLVSKMRGTFADKEKKKEKKKNKPQDQAANAANKKPVQVP-----------GQETDNAAPGSAQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGSARDALQGFKITPSHAMKITYAKK 226

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: V4A4Z3 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_121828 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.461e-56
Identity = 105/237 (44.30%), Postives = 149/237 (62.87%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M N PNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+A +   MRGQAF+I+K+I S+  A R++Q +  +DKPM+I ++KKDS  I +MKG   E  +R+ ++ E RK+K       T    P  + ST I +                          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+ETE QA  AK++  GF+I  ++ MKI YA K
Sbjct:    1 MSNAPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEINSAANALRSMQGFPFYDKPMRISFSKKDSNVIAKMKGTYVEEPRRKRDDDEPRKKKT-KSQANTATAAPTPITSTAIPEQP--------------------PNQILFITNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFETEVQAGVAKDALQGFKITPSNAMKISYAKK 216

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 178.718 bits (452), Expect = 1.335e-55
Identity = 97/242 (40.08%), Postives = 151/242 (62.40%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVG-----VVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  + +M+G   +  K+++++K+ +++           V T P  P    +TV V ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQNAVNTQPAPP----ATVQVPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219

[Close]

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVG-----VVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  + +M+G   +  K+++++K+ +++           V T P  P    +TV V ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQNAVNTQPAPP----ATVQVPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 172.94 bits (437), Expect = 1.992e-53
Identity = 91/238 (38.24%), Postives = 148/238 (62.18%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXX-IVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  + +M+G   +  K+++++K+ +++        + +P +P    + ++                             F++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQVSPFVPDNPPNYIL-----------------------------FLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 209

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:103028350])

HSP 1 Score: 120.553 bits (301), Expect = 2.428e-32
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 1

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S++ A R++Q +  +DKPM+I YAK+DS  I +MKG
Sbjct:    5 ELRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMRGQAFVIFKEVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKG 99

HSP 2 Score: 85.1149 bits (209), Expect = 4.376e-19
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+E+  GF+I   + MKI +A K
Sbjct:  209 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQTNAMKISFAKK 281

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:103039358])

HSP 1 Score: 46.9802 bits (110), Expect = 9.819e-6
Identity = 30/103 (29.13%), Postives = 49/103 (47.57%), Query Frame = 1

Query:   10 FRKYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK 294
             ++  VF       P   LYV N+  +V++ DLK    Y++G+Y          + DI+  +   M+GQAF+      S+  A R    Y L DKP+ + +A+
Sbjct:  392 IKRMSVFKNYEPGEPTCRLYVKNVAKQVEEKDLK----YIYGRYIDPSSEQERNMFDIVLMKEGRMKGQAFVGLPTEKSAERALRDTNGYVLHDKPLVVQFAR 490

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004128.1 (pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gene:ENSPMAG00000003771.1 transcript:ENSPMAT00000004128.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.9005 bits (237), Expect = 1.356e-24
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 1

Query:   49 RPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            R + T+Y+N  ++ +   +LKKSLY +F Q+G I+DI+A +   MRGQAF+I+K+I S+T A R++Q +  +DKPM+I Y+K DS  I +MKG   E
Sbjct:    7 RADRTIYIN-YSEVLSPVELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKVDSDIIAKMKGTFVE 102

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006657.1 (pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene:ENSPMAG00000006008.1 transcript:ENSPMAT00000006657.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.0542 bits (105), Expect = 1.346e-6
Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 1

Query:   55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288
            N  LYV NL  K+      + +Y +FG+YG I  I     P  RG A+++Y+DI  +  A   L  + + ++ + + Y
Sbjct:   18 NRILYVRNLPYKI----TAEEMYDIFGKYGAIRQIRVGTTPESRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 45.0542 bits (105), Expect = 8.979e-6
Identity = 35/122 (28.69%), Postives = 55/122 (45.08%), Query Frame = 1

Query:   16 KYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK----KDSTQITEMKGLLNEAS 345
            K  VF       P   LYV NL+ +V + DLK    ++FG+Y          + D+   R   M+GQAF+       +  A R    Y L  +P+ I YA+    K+  ++ + K  L+ A+
Sbjct:  408 KSSVFKNYSAGEPTCRLYVKNLSRQVSEQDLK----HIFGRYVDFSSDVEKNMFDVRLMREGRMKGQAFVGLPSEREAQKALRDAHGYVLHGRPLVIQYARSARPKEELKVGKKKSSLDAAT 525

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Match: MSL1 (U2B component of U2 snRNP; involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members [Source:SGD;Acc:S000001448])

HSP 1 Score: 53.5286 bits (127), Expect = 7.163e-10
Identity = 26/82 (31.71%), Postives = 49/82 (59.76%), Query Frame = 1

Query:   58 HTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDS 303
            +TLYV+ LN+K+    L+ +L+ LF  +G ++ + +      RGQAFI  + I  ++ A  +L   + F KP+K+ ++K ++
Sbjct:   28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKV-SMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSKSET 108

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO47757 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKX3])

HSP 1 Score: 158.303 bits (399), Expect = 3.674e-48
Identity = 95/237 (40.08%), Postives = 133/237 (56.12%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            MEN PN T+Y+ NLN+K+KK +LKKSLY +F Q+G I+DI+A +   MRGQAF+++KDI S+T A R++Q +  +DKPM+I YAK  S  + + +G              + K+ K           PI     +  Q                        N LF++NLP ETT+ ML+MLF+QF GF+EVR    R D++FVE+E E QA  AK++  GF+I   + M I YA K
Sbjct:    1 MENPPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTF----------VPREKKPKEKRKAPENAGAPIAAPMAIPTQQP------------------DLPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPGRSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO36652 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SI29])

HSP 1 Score: 45.8246 bits (107), Expect = 1.226e-6
Identity = 25/78 (32.05%), Postives = 40/78 (51.28%), Query Frame = 1

Query:   55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288
            N  LY+ NL  K+      + +Y +FG+YG I  I    AP  RG AF++Y+DI  +  A   L  + +  + + + Y
Sbjct:   18 NRILYIRNLPYKITA----EEMYDIFGKYGAIRQIRLGNAPDTRGTAFVVYEDIFDAKNACDHLSGFNVCGRYLVVLY 91

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:101174159])

HSP 1 Score: 172.94 bits (437), Expect = 2.122e-53
Identity = 92/237 (38.82%), Postives = 147/237 (62.03%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPN+T+Y+NN+NDKVKK +LK+SLY LF Q+G I+ ++A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  I +MKG   +      ++++K+K +++       P + +   S+ +  N                       + LF++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E++ QA  AK++  GF+I     MKI +A K
Sbjct:    1 MDIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGDKE---KKKEKKKKAQELAANAAKKPAVSLC--SSQVPDNPPN--------------------HILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 212

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 120.939 bits (302), Expect = 3.980e-33
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99

HSP 2 Score: 87.4261 bits (215), Expect = 1.626e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A++S  GF+I   H MKI +A K
Sbjct:  147 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 219

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 120.553 bits (301), Expect = 1.895e-32
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99

HSP 2 Score: 88.1965 bits (217), Expect = 2.306e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A++S  GF+I   H MKI +A K
Sbjct:  200 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 120.553 bits (301), Expect = 1.895e-32
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1

Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99

HSP 2 Score: 88.1965 bits (217), Expect = 2.306e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A++S  GF+I   H MKI +A K
Sbjct:  200 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: srsf10b (serine and arginine rich splicing factor 10 [Source:NCBI gene;Acc:101171844])

HSP 1 Score: 50.447 bits (119), Expect = 4.744e-7
Identity = 29/96 (30.21%), Postives = 53/96 (55.21%), Query Frame = 1

Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDI-----IASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMK 324
            PN +L+V N++D+ +  DL++     FG+YG IVD+       +R P  RG A+I ++D+  +  A  +L    +  + ++I +A+ D     +MK
Sbjct:    8 PNTSLFVRNISDESRPEDLRRE----FGRYGPIVDVYIPLDFYTRQP--RGFAYIQFEDVRDAEDALHSLDRKWVCGRQIEIQFAQGDRKTPNQMK 97

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017078.1 (SMESG000017078.1)

HSP 1 Score: 409.068 bits (1050), Expect = 3.406e-146
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1

Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQPPAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK
Sbjct:    1 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQPPAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 237

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017061.1 (SMESG000017061.1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.343e-8
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1

Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYAN 747
            L V+N P    +A L M F++  GF ++     +  V+FV Y T  QAKDA  +Y G+Q+  +H++++ Y+N
Sbjct:  132 LSVTNYPASCNEAALIMFFAKMDGFLQLFSHRTKKHVSFVIYSTIDQAKDALSTYHGYQMDHDHKLQVCYSN 203

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000078309.1 (SMESG000078309.1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.586e-6
Identity = 25/87 (28.74%), Postives = 51/87 (58.62%), Query Frame = 1

Query:   49 RPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPV------MRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA 291
            R   T+YV N+ + +++ +LK+    +FG+YG   +I+A+  PV       +G AF+ ++DI  +  +F  LQ Y++  + +++ +A
Sbjct:    3 RSTTTIYVGNIPEDLRRDELKR----IFGRYG---NIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 82

The following BLAST results are available for this feature:

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SNRPB2	2.328e-56	42.39	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
SNRPB2	2.328e-56	42.39	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
SNRPA	2.766e-37	55.34	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
SNRPA	3.525e-37	55.34	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
SNRPA	2.033e-35	55.34	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rnp-3	4.364e-43	34.76	RNP (RRM RNA binding domain) containing [Source:U...	[more]
rnp-3	2.539e-28	30.29	RNP (RRM RNA binding domain) containing [Source:U...	[more]
rnp-2	1.133e-22	43.48	RNP (RRM RNA binding domain) containing [Source:U...	[more]
mec-8	1.046e-9	43.59	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]
mec-8	1.046e-9	43.59	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
snf	7.988e-25	52.08	gene:FBgn0003449 transcript:FBtr0070748	[more]
Sf3b6	7.414e-6	30.77	gene:FBgn0035692 transcript:FBtr0077015	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
snrpb2	4.013e-56	41.15	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpb2	4.013e-56	41.15	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpa	2.774e-32	53.54	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	2.774e-32	53.54	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	1.163e-31	53.54	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
slc17a6	5.465e-51	41.60	solute carrier family 17 member 6 [Source:Xenbase;...	[more]
slc17a6	1.195e-34	58.33	solute carrier family 17 member 6 [Source:Xenbase;...	[more]
tubgcp5	1.201e-33	55.00	tubulin gamma complex associated protein 5 [Source...	[more]
tubgcp5	1.636e-33	55.56	tubulin gamma complex associated protein 5 [Source...	[more]
rnpc3	1.526e-6	32.04	RNA binding region (RNP1, RRM) containing 3 [Sourc...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Snrpb2	5.794e-58	38.58	U2 small nuclear ribonucleoprotein B [Source:MGI S...	[more]
Snrpa	1.806e-56	37.37	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
Snrpa	1.806e-56	37.37	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
Snrpa	1.806e-56	37.37	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
Snrpa	7.979e-42	36.29	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9CQI7\|RU2B_MOUSE	4.053e-57	38.58	U2 small nuclear ribonucleoprotein B'' OS=Mus musc...	[more]
sp\|P08579\|RU2B_HUMAN	1.118e-55	42.39	U2 small nuclear ribonucleoprotein B'' OS=Homo sap...	[more]
sp\|Q62189\|SNRPA_MOUSE	1.264e-55	37.37	U1 small nuclear ribonucleoprotein A OS=Mus muscul...	[more]
sp\|Q0DKM4\|RU1A_ORYSJ	1.042e-36	35.54	U1 small nuclear ribonucleoprotein A OS=Oryza sati...	[more]
sp\|A2Y0J7\|RU1A_ORYSI	1.042e-36	35.54	U1 small nuclear ribonucleoprotein A OS=Oryza sati...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1S3WV66	7.150e-58	41.94	U1 small nuclear ribonucleoprotein A isoform X2 OS...	[more]
A0A0R3VVA3	3.242e-57	46.69	Uncharacterized protein OS=Taenia asiatica OX=6051...	[more]
A0A0R3U5E1	6.155e-57	47.06	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A2G9RGL5	2.663e-56	43.04	Uncharacterized protein OS=Lithobates catesbeianus...	[more]
V4A4Z3	4.461e-56	44.30	Uncharacterized protein OS=Lottia gigantea OX=2251...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
snrpb2	1.335e-55	40.08	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpb2	1.335e-55	40.08	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpb2	1.992e-53	38.24	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpa	2.428e-32	55.79	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
rnpc3	9.819e-6	29.13	RNA binding region (RNP1, RRM) containing 3 [Sourc...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSPMAT00000004128.1	1.356e-24	46.39	pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gen...	[more]
ENSPMAT00000006657.1	1.346e-6	30.77	pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene...	[more]
rnpc3	8.979e-6	28.69	RNA-binding region (RNP1, RRM) containing 3 [Sourc...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
MSL1	7.163e-10	31.71	U2B component of U2 snRNP; involved in splicing, b...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO47757	3.674e-48	40.08	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO36652	1.226e-6	32.05	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
snrpb2	2.122e-53	38.82	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpa	3.980e-33	54.74	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	1.895e-32	54.74	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	1.895e-32	54.74	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
srsf10b	4.744e-7	30.21	serine and arginine rich splicing factor 10 [Sourc...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000017078.1	3.406e-146	100.00	SMESG000017078.1	[more]
SMESG000017061.1	1.343e-8	36.11	SMESG000017061.1	[more]
SMESG000078309.1	1.586e-6	28.74	SMESG000078309.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004517 ID=SMED30004517|Name=U2 small nuclear ribonucleoprotein B|organism=Schmidtea mediterranea sexual|type=transcript|length=783bp
AATATTTAATTTAGAAAATATTTAGTATTTTTACAAGTAATGGAAAATAG
GCCAAATCATACATTGTACGTTAATAATCTAAATGACAAAGTCAAGAAAC
CTGATTTGAAGAAGTCACTTTATTATCTTTTTGGCCAATATGGGGGAATT
GTTGATATAATAGCTAGTAGAGCTCCCGTTATGCGTGGTCAAGCATTCAT
TATTTACAAAGATATAGTTTCTTCAACTACAGCTTTTAGAGCTCTGCAAA
ATTATCAGCTATTTGATAAACCCATGAAAATTCATTATGCTAAAAAAGAT
TCTACTCAAATTACAGAAATGAAAGGTCTTCTAAATGAAGCAAGCAAACG
TAGAGATGAGGAAAAAGAAAAGCGGAAAAGAAAGAAGATAGTTGGAGTAG
TTAAAACGACGCCCACGATTCCAATTTATGTGGAGTCCACGGTTATTGTG
CAAAATGATCAAATTCAACAAATACAGCAGCAGCAACCTCCAGCTCAACC
GATACAAGAAGAAATTCCCACTTGCAATACTCTCTTTGTGTCTAACTTGC
CACAAGAGACAACAAAGGCGATGTTAACAATGCTATTCAGTCAATTCAAA
GGATTTCGAGAAGTTCGCCATTCTGCCGAGCGTTATGATGTTGCATTTGT
CGAGTATGAGACCGAACGACAGGCAAAAGATGCCAAGGAAAGTTACGATG
GGTTTCAGATTGTTCTAAATCACCGGATGAAAATTGAATATGCAAATAAA
TAATTTGCAGTTTTTGTAAATATTAAATTTTGT

protein sequence of SMED30004517-orf-1

>SMED30004517-orf-1 ID=SMED30004517-orf-1|Name=SMED30004517-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=238bp
MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRG
QAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE
ASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQP
PAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYD
VAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **cellular component**
Term	Definition
GO:0019013	viral nucleocapsid
GO:0030529	intracellular ribonucleoprotein complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..118
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 2..237
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 2..237
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 163..232 e-value: 2.0603E-27 score: 98.0247
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 8..85 e-value: 1.51516E-41 score: 134.578
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 164..233 e-value: 6.7E-13 score: 58.8 coord: 8..82 e-value: 4.5E-8 score: 42.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 165..228 e-value: 9.7E-14 score: 51.0 coord: 9..79 e-value: 1.5E-5 score: 24.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..86 score: 12.117
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 163..237 score: 13.567
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 156..237 e-value: 2.5E-19 score: 71.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 1..105 e-value: 1.8E-24 score: 87.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 152..236
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 1..95