U2 small nuclear ribonucleoprotein B
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004517 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPB2 (small nuclear ribonucleoprotein polypeptide B2 [Source:HGNC Symbol;Acc:HGNC:11155]) HSP 1 Score: 181.415 bits (459), Expect = 2.328e-56 Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ SST A R LQ + + KPM+I YAK DS I++M+G + K+++++K K VE T N + Q Q P LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E + QA A+++ GF+I +H MKI YA K Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPB2 (small nuclear ribonucleoprotein polypeptide B2 [Source:HGNC Symbol;Acc:HGNC:11155]) HSP 1 Score: 181.415 bits (459), Expect = 2.328e-56 Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ SST A R LQ + + KPM+I YAK DS I++M+G + K+++++K K VE T N + Q Q P LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E + QA A+++ GF+I +H MKI YA K Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151]) HSP 1 Score: 129.798 bits (325), Expect = 2.766e-37 Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+ MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG E Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151]) HSP 1 Score: 129.798 bits (325), Expect = 3.525e-37 Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+ MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG E Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151]) HSP 1 Score: 129.413 bits (324), Expect = 2.033e-35 Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+ MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG E Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103 HSP 2 Score: 86.6557 bits (213), Expect = 2.188e-19 Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+++ GF+I N+ MKI +A K Sbjct: 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2]) HSP 1 Score: 145.976 bits (367), Expect = 4.364e-43 Identity = 81/233 (34.76%), Postives = 126/233 (54.08%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 PNHT+YVNNLN+KVKK +LK+SL+ +F Q+G I+ +++ R MRGQA I++K++ S++ A RALQ + + KPM+I YA++DS I+ KG V K + I + + + Q Q N LF SN+P+ T + +FSQF G REVR D AF+EYE+E ++ A+++ D F+I ++ +++A+K Sbjct: 6 PNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTF---------------------VEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2]) HSP 1 Score: 107.071 bits (266), Expect = 2.539e-28 Identity = 63/208 (30.29%), Postives = 103/208 (49.52%), Query Frame = 1 Query: 127 LFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 +F Q+G I+ +++ R MRGQA I++K++ S++ A RALQ + + KPM+I YA++DS I+ KG V K + I + + + Q Q N LF SN+P+ T + +FSQF G REVR D AF+EYE+E ++ A+++ D F+I ++ +++A+K Sbjct: 2 VFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTF---------------------VEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 188
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-2 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:Q21322]) HSP 1 Score: 92.4337 bits (228), Expect = 1.133e-22 Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 PN TLY+NNLN+K+K +L+KSL +F Q+G IV ++ R MRGQA +I+K++ +++ A AL + ++KPM+I +A++DS + + KG Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKG 97 HSP 2 Score: 65.4698 bits (158), Expect = 1.077e-12 Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF +NLP T ML ++F+QF G +++R R +AFVE++T+ A A+ + + F+I H M+++YA K Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4]) HSP 1 Score: 58.151 bits (139), Expect = 1.046e-9 Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 520 TCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR-HSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHR--MKIEYA 744 C+TLFV+NL E + L +F F GF +R H+ VAFVEY ++A A S GFQI N R ++IEYA Sbjct: 226 ACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYA 303
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4]) HSP 1 Score: 58.151 bits (139), Expect = 1.046e-9 Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 520 TCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR-HSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHR--MKIEYA 744 C+TLFV+NL E + L +F F GF +R H+ VAFVEY ++A A S GFQI N R ++IEYA Sbjct: 226 ACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYA 303
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: snf (gene:FBgn0003449 transcript:FBtr0070748) HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-25 Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 ME PN T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+A + MRGQAF+I+K+I S++ A R +Q + +DKPM+I Y+K DS + ++KG Sbjct: 1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKG 96 HSP 2 Score: 89.3521 bits (220), Expect = 3.080e-21 Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+ TE Q+ AKE+ GF+I H MKI +A K Sbjct: 144 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: Sf3b6 (gene:FBgn0035692 transcript:FBtr0077015) HSP 1 Score: 44.669 bits (104), Expect = 7.414e-6 Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 1 Query: 55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288 N LYV NL K+ ++ Y +FG++G I I P RG AF++Y+DI + A L + + ++ + + Y Sbjct: 14 NRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 87
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2]) HSP 1 Score: 180.259 bits (456), Expect = 4.013e-56 Identity = 100/243 (41.15%), Postives = 148/243 (60.91%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I+DI+A + MRGQAF+I+K++ ++T A R LQ + ++KPM+I YAK DS +++M+G + K+ E+ KK G V T P P +TV + ++ LF++NLP+ET + ML+MLF+QF GF+EVR ++D++FVE+E+E QA AK++ GF+I MKI YA K Sbjct: 1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVNTQPPPP----ATVQIPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2]) HSP 1 Score: 180.259 bits (456), Expect = 4.013e-56 Identity = 100/243 (41.15%), Postives = 148/243 (60.91%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I+DI+A + MRGQAF+I+K++ ++T A R LQ + ++KPM+I YAK DS +++M+G + K+ E+ KK G V T P P +TV + ++ LF++NLP+ET + ML+MLF+QF GF+EVR ++D++FVE+E+E QA AK++ GF+I MKI YA K Sbjct: 1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVNTQPPPP----ATVQIPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]) HSP 1 Score: 118.242 bits (295), Expect = 2.774e-32 Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR M+GQAF+I+K+I S++ A R++Q + +DKPM+I Y+K+DS I +MKG E Sbjct: 5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]) HSP 1 Score: 118.242 bits (295), Expect = 2.774e-32 Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR M+GQAF+I+K+I S++ A R++Q + +DKPM+I Y+K+DS I +MKG E Sbjct: 5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]) HSP 1 Score: 119.013 bits (297), Expect = 1.163e-31 Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR M+GQAF+I+K+I S++ A R++Q + +DKPM+I Y+K+DS I +MKG E Sbjct: 5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103 HSP 2 Score: 85.8853 bits (211), Expect = 2.703e-19 Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+E+ GF+I ++ MKI +A K Sbjct: 209 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394]) HSP 1 Score: 167.933 bits (424), Expect = 5.465e-51 Identity = 99/238 (41.60%), Postives = 143/238 (60.08%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAM-LTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NNL DKVKKP+LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ S+T A R LQ + ++KPM+I YAK DS I +MKG + K+++++K K + + K + + + +Q Q N + N E T M L+MLF+QF GF+EVR R+D+AFVE+E E +A A+++ GF+I +H MKI YANK Sbjct: 1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKKEKKKAKAQEQAANAANKKIGDLVFF----CFFLHYFASNANNAPGASQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 234
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394]) HSP 1 Score: 125.561 bits (314), Expect = 1.195e-34 Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 M+ RPNHT+Y+NNL DKVKKP+LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ S+T A R LQ + ++KPM+I YAK DS I +MKG Sbjct: 1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKG 96 HSP 2 Score: 90.1225 bits (222), Expect = 3.125e-21 Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E E +A A+++ GF+I +H MKI YANK Sbjct: 151 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053]) HSP 1 Score: 124.405 bits (311), Expect = 1.201e-33 Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 1 Query: 28 FLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 + V E RPN+T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+ MRGQAF+I+K+I S+T A R++Q + +DKPM+I Y+K DS I +MKG Sbjct: 4 LMAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKG 103 HSP 2 Score: 87.0409 bits (214), Expect = 1.258e-19 Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 526 NTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+ES GF+I ++ MKI +A K Sbjct: 206 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 280
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053]) HSP 1 Score: 124.02 bits (310), Expect = 1.636e-33 Identity = 55/99 (55.56%), Postives = 78/99 (78.79%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 + V E RPN+T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+ MRGQAF+I+K+I S+T A R++Q + +DKPM+I Y+K DS I +MKG Sbjct: 1 MAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKG 99 HSP 2 Score: 87.0409 bits (214), Expect = 1.244e-19 Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+ES GF+I ++ MKI +A K Sbjct: 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:548771]) HSP 1 Score: 50.447 bits (119), Expect = 1.526e-6 Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 1 Query: 10 FRKYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK 294 RK VF PN LYV NL+ + ++ DLK ++FG++ + DI + M+GQAFI + + A + + Y L DKPM I +A+ Sbjct: 414 MRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLK----FIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFAR 512
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpb2 (U2 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:104805]) HSP 1 Score: 185.267 bits (469), Expect = 5.794e-58 Identity = 98/254 (38.58%), Postives = 142/254 (55.91%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE-----------------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ SST A R LQ + + KPM+I YAK DS I++M+G + A+ + + G P +P Y + + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E + QA A+++ GF+I +H MKI YA K Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYI-----------------------------LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690]) HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56 Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG ++ + + + +VG V+ P +P ++ I+ + QQ+ Q P E P + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+++ GF+I N+ MKI +A K Sbjct: 7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690]) HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56 Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG ++ + + + +VG V+ P +P ++ I+ + QQ+ Q P E P + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+++ GF+I N+ MKI +A K Sbjct: 7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690]) HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56 Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG ++ + + + +VG V+ P +P ++ I+ + QQ+ Q P E P + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+++ GF+I N+ MKI +A K Sbjct: 7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690]) HSP 1 Score: 144.436 bits (363), Expect = 7.979e-42 Identity = 86/237 (36.29%), Postives = 128/237 (54.01%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR 618 + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG ++ + + + +VG V+ P +P ++ I+ + QQ+ Q P E P + LF++NLP+ET + ML+MLF+QF GF+EVR Sbjct: 7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 243
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q9CQI7|RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus OX=10090 GN=Snrpb2 PE=1 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 4.053e-57 Identity = 98/254 (38.58%), Postives = 142/254 (55.91%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE-----------------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ SST A R LQ + + KPM+I YAK DS I++M+G + A+ + + G P +P Y + + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E + QA A+++ GF+I +H MKI YA K Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYI-----------------------------LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|P08579|RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens OX=9606 GN=SNRPB2 PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.118e-55 Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A + MRGQAF+I+K++ SST A R LQ + + KPM+I YAK DS I++M+G + K+++++K K VE T N + Q Q P LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E + QA A+++ GF+I +H MKI YA K Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q62189|SNRPA_MOUSE (U1 small nuclear ribonucleoprotein A OS=Mus musculus OX=10090 GN=Snrpa PE=1 SV=3) HSP 1 Score: 183.341 bits (464), Expect = 1.264e-55 Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG ++ + + + +VG V+ P +P ++ I+ + QQ+ Q P E P + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+++ GF+I N+ MKI +A K Sbjct: 7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q0DKM4|RU1A_ORYSJ (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.042e-36 Identity = 86/242 (35.54%), Postives = 133/242 (54.96%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA--------KKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGV-VKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 PN T+Y+NNLN+K+K +LKKSL +F Q+G I+D++A + +GQA+++++D+ S+T A +++Q++ +KPM+I YA K D T + + N+ + +++E+ VG+ V P + Y + Q+ + E I N LFV NLP ETT ML MLF Q+ GF+EVR + +AFVEY E QA A GF+I +++M I YA K Sbjct: 21 PNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGV--YGAPPL-------SQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.042e-36 Identity = 86/242 (35.54%), Postives = 133/242 (54.96%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA--------KKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGV-VKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 PN T+Y+NNLN+K+K +LKKSL +F Q+G I+D++A + +GQA+++++D+ S+T A +++Q++ +KPM+I YA K D T + + N+ + +++E+ VG+ V P + Y + Q+ + E I N LFV NLP ETT ML MLF Q+ GF+EVR + +AFVEY E QA A GF+I +++M I YA K Sbjct: 21 PNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGV--YGAPPL-------SQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A1S3WV66 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Erinaceus europaeus OX=9365 GN=SNRPA PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 7.150e-58 Identity = 104/248 (41.94%), Postives = 154/248 (62.10%), Query Frame = 1 Query: 31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXI--------VGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+ MRGQAF+I+K++ S+T A R++Q + +DKPM+I YAK DS I +MKG E ++R++ K K + VG T P + S+ + +N + LF++NLP+ET++ ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+++ GF+I N+ MKI +A K Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAKGPGVGAPGTLPDSWLLFPSSQLSENP--------------------PNHILFLTNLPEETSELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 228
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0R3VVA3 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS1310 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 3.242e-57 Identity = 120/257 (46.69%), Postives = 156/257 (60.70%), Query Frame = 1 Query: 37 VMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIV---------------------GVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYA 744 VM+ RPNHTLYVNNLNDKVKK DLK++LYYLF YG +++IIA + P MRGQAFII++ + S+TTA R LQ +QLFDKPM+I YA+K+STQI ++G+ E K+++EE+EKR+R+K+ G TP V S Q D + LFVSNLP+ETT AMLTMLF+QF GF+E R + + FVEYETE QA AK +Y GF++ H + + YA Sbjct: 255 VMDIRPNHTLYVNNLNDKVKKADLKRALYYLFSPYGRVLEIIAMKTPKMRGQAFIIFQALTSATTALRVLQGFQLFDKPMRIQYARKNSTQIEVLQGVNAETQKKKEEEREKRRRRKLAQRQAAAAAAAAAAGGAGAVVNGQAGGTPPASSLVTSAFAFQVDGEVDTEPPN-------------RVLFVSNLPEETTDAMLTMLFNQFSGFKEARRAVG--GIGFVEYETEAQATAAKVTYHGFKLTRTHAISVTYA 496 HSP 2 Score: 100.523 bits (249), Expect = 2.444e-20 Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 PNHT+Y+NNLN+K+K +LKKSLY +F Q+G I+DII ++ MRGQAF+++ +I S+ +A A++ + L++KPM I++A+ S I + +G Sbjct: 34 PNHTIYINNLNEKIKTDELKKSLYAVFVQFGQILDIITGKSVKMRGQAFVVFSEISSARSALEAMRGFPLYEKPMCINFARTTSDIIAKREG 125
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0R3U5E1 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1938 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 6.155e-57 Identity = 120/255 (47.06%), Postives = 156/255 (61.18%), Query Frame = 1 Query: 22 LVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXI--------------VGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYA 744 V M+ RPNHTLYVNNLNDK+KK DLK++LYYLF YG IVDIIA + P MRGQAFIIY+ I S+T A R LQ +QLF+KPM+I YA+K+S+QI ++G+ E K+++EE+EKR+R+K+ VG + TP + +E P LFVSNLP+ETT AMLTMLF+QF GF+E R + + FVEYETE QA AK +Y GF++ H + + YA Sbjct: 248 FVEFSTMDIRPNHTLYVNNLNDKLKKADLKRALYYLFSPYGRIVDIIAMKTPKMRGQAFIIYQSITSATNASRVLQGFQLFEKPMRIQYARKNSSQIEVLQGVNAETQKKKEEEREKRRRRKLAQRQAAAAAAAAAAVGQLGGTPGVDAEMEG-------------------------EPPNRVLFVSNLPEETTDAMLTMLFNQFSGFKEARRAVG--GIGFVEYETEAQASAAKLTYHGFKLTRTHAISVTYA 475 HSP 2 Score: 99.3673 bits (246), Expect = 4.593e-20 Identity = 42/92 (45.65%), Postives = 69/92 (75.00%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 PNHT+Y+NNLN+K+K +LKKSLY +F Q+G I+DII ++ MRGQAF+++ ++ S+ +A A++ + L++KPM I++A+ S I + +G Sbjct: 34 PNHTIYINNLNEKIKTDELKKSLYAVFVQFGQILDIITGKSVKMRGQAFVVFSEVSSARSALEAMRGFPLYEKPMCINFARTTSDIIAKREG 125 HSP 3 Score: 59.6918 bits (143), Expect = 1.752e-6 Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYET 663 LF++NLP++ +AML MLF+ F GFRE+R R+D+AFVE+ T Sbjct: 210 LFLTNLPEDANEAMLGMLFAPFVGFREIRMVPSRHDIAFVEFST 253
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A2G9RGL5 (Uncharacterized protein OS=Lithobates catesbeianus OX=8400 GN=AB205_0145490 PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 2.663e-56 Identity = 102/237 (43.04%), Postives = 148/237 (62.45%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NNLNDK+KK +LK+SLY LF Q+G ++DI+A + MRGQAF+I+K++ SST A R LQ + FDKPM+I YAK DS +++M+G + K+++++K K + + K +P Q + P LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+E E QA A+++ GF+I +H MKI YA K Sbjct: 1 MDIRPNHTVYINNLNDKIKKDELKRSLYALFSQFGHVMDIVALKTTKMRGQAFVIFKELSSSTNALRQLQGFPFFDKPMRIQYAKSDSDLVSKMRGTFADKEKKKEKKKNKPQDQAANAANKKPVQVP-----------GQETDNAAPGSAQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGSARDALQGFKITPSHAMKITYAKK 226
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: V4A4Z3 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_121828 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 4.461e-56 Identity = 105/237 (44.30%), Postives = 149/237 (62.87%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M N PNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+A + MRGQAF+I+K+I S+ A R++Q + +DKPM+I ++KKDS I +MKG E +R+ ++ E RK+K T P + ST I + LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE+ETE QA AK++ GF+I ++ MKI YA K Sbjct: 1 MSNAPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEINSAANALRSMQGFPFYDKPMRISFSKKDSNVIAKMKGTYVEEPRRKRDDDEPRKKKT-KSQANTATAAPTPITSTAIPEQP--------------------PNQILFITNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFETEVQAGVAKDALQGFKITPSNAMKISYAKK 216
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130]) HSP 1 Score: 178.718 bits (452), Expect = 1.335e-55 Identity = 97/242 (40.08%), Postives = 151/242 (62.40%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVG-----VVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A + MRGQAF+++K++ ++T A R LQ + ++KPM+I YAK DS + +M+G + K+++++K+ +++ V T P P +TV V ++ LF++NLP+ET + ML+MLF+QF GF+EVR ++D+AFVE+E+E QA AK++ GF+I MKI YA K Sbjct: 1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQNAVNTQPAPP----ATVQVPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130]) HSP 1 Score: 178.718 bits (452), Expect = 1.335e-55 Identity = 97/242 (40.08%), Postives = 151/242 (62.40%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVG-----VVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A + MRGQAF+++K++ ++T A R LQ + ++KPM+I YAK DS + +M+G + K+++++K+ +++ V T P P +TV V ++ LF++NLP+ET + ML+MLF+QF GF+EVR ++D+AFVE+E+E QA AK++ GF+I MKI YA K Sbjct: 1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQNAVNTQPAPP----ATVQVPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130]) HSP 1 Score: 172.94 bits (437), Expect = 1.992e-53 Identity = 91/238 (38.24%), Postives = 148/238 (62.18%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXX-IVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A + MRGQAF+++K++ ++T A R LQ + ++KPM+I YAK DS + +M+G + K+++++K+ +++ + +P +P + ++ F++NLP+ET + ML+MLF+QF GF+EVR ++D+AFVE+E+E QA AK++ GF+I MKI YA K Sbjct: 1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQVSPFVPDNPPNYIL-----------------------------FLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 209
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:103028350]) HSP 1 Score: 120.553 bits (301), Expect = 2.428e-32 Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR MRGQAF+I+K++ S++ A R++Q + +DKPM+I YAK+DS I +MKG Sbjct: 5 ELRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMRGQAFVIFKEVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKG 99 HSP 2 Score: 85.1149 bits (209), Expect = 4.376e-19 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A+E+ GF+I + MKI +A K Sbjct: 209 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQTNAMKISFAKK 281
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:103039358]) HSP 1 Score: 46.9802 bits (110), Expect = 9.819e-6 Identity = 30/103 (29.13%), Postives = 49/103 (47.57%), Query Frame = 1 Query: 10 FRKYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK 294 ++ VF P LYV N+ +V++ DLK Y++G+Y + DI+ + M+GQAF+ S+ A R Y L DKP+ + +A+ Sbjct: 392 IKRMSVFKNYEPGEPTCRLYVKNVAKQVEEKDLK----YIYGRYIDPSSEQERNMFDIVLMKEGRMKGQAFVGLPTEKSAERALRDTNGYVLHDKPLVVQFAR 490
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004128.1 (pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gene:ENSPMAG00000003771.1 transcript:ENSPMAT00000004128.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 95.9005 bits (237), Expect = 1.356e-24 Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 1 Query: 49 RPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339 R + T+Y+N ++ + +LKKSLY +F Q+G I+DI+A + MRGQAF+I+K+I S+T A R++Q + +DKPM+I Y+K DS I +MKG E Sbjct: 7 RADRTIYIN-YSEVLSPVELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKVDSDIIAKMKGTFVE 102
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006657.1 (pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene:ENSPMAG00000006008.1 transcript:ENSPMAT00000006657.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 45.0542 bits (105), Expect = 1.346e-6 Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 1 Query: 55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288 N LYV NL K+ + +Y +FG+YG I I P RG A+++Y+DI + A L + + ++ + + Y Sbjct: 18 NRILYVRNLPYKI----TAEEMYDIFGKYGAIRQIRVGTTPESRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672]) HSP 1 Score: 45.0542 bits (105), Expect = 8.979e-6 Identity = 35/122 (28.69%), Postives = 55/122 (45.08%), Query Frame = 1 Query: 16 KYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK----KDSTQITEMKGLLNEAS 345 K VF P LYV NL+ +V + DLK ++FG+Y + D+ R M+GQAF+ + A R Y L +P+ I YA+ K+ ++ + K L+ A+ Sbjct: 408 KSSVFKNYSAGEPTCRLYVKNLSRQVSEQDLK----HIFGRYVDFSSDVEKNMFDVRLMREGRMKGQAFVGLPSEREAQKALRDAHGYVLHGRPLVIQYARSARPKEELKVGKKKSSLDAAT 525
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Match: MSL1 (U2B component of U2 snRNP; involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members [Source:SGD;Acc:S000001448]) HSP 1 Score: 53.5286 bits (127), Expect = 7.163e-10 Identity = 26/82 (31.71%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 58 HTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDS 303 +TLYV+ LN+K+ L+ +L+ LF +G ++ + + RGQAFI + I ++ A +L + F KP+K+ ++K ++ Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKV-SMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSKSET 108
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO47757 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKX3]) HSP 1 Score: 158.303 bits (399), Expect = 3.674e-48 Identity = 95/237 (40.08%), Postives = 133/237 (56.12%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 MEN PN T+Y+ NLN+K+KK +LKKSLY +F Q+G I+DI+A + MRGQAF+++KDI S+T A R++Q + +DKPM+I YAK S + + +G + K+ K PI + Q N LF++NLP ETT+ ML+MLF+QF GF+EVR R D++FVE+E E QA AK++ GF+I + M I YA K Sbjct: 1 MENPPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTF----------VPREKKPKEKRKAPENAGAPIAAPMAIPTQQP------------------DLPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPGRSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO36652 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SI29]) HSP 1 Score: 45.8246 bits (107), Expect = 1.226e-6 Identity = 25/78 (32.05%), Postives = 40/78 (51.28%), Query Frame = 1 Query: 55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288 N LY+ NL K+ + +Y +FG+YG I I AP RG AF++Y+DI + A L + + + + + Y Sbjct: 18 NRILYIRNLPYKITA----EEMYDIFGKYGAIRQIRLGNAPDTRGTAFVVYEDIFDAKNACDHLSGFNVCGRYLVVLY 91
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:101174159]) HSP 1 Score: 172.94 bits (437), Expect = 2.122e-53 Identity = 92/237 (38.82%), Postives = 147/237 (62.03%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 M+ RPN+T+Y+NN+NDKVKK +LK+SLY LF Q+G I+ ++A + MRGQAF+++K++ ++T A R LQ + ++KPM+I YAK DS I +MKG + ++++K+K +++ P + + S+ + N + LF++NLP+ET + ML+MLF+QF GF+EVR ++D+AFVE+E++ QA AK++ GF+I MKI +A K Sbjct: 1 MDIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGDKE---KKKEKKKKAQELAANAAKKPAVSLC--SSQVPDNPPN--------------------HILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 212
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621]) HSP 1 Score: 120.939 bits (302), Expect = 3.980e-33 Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R M+GQAF+I+K+I S++ A R++Q + +DKPM+I Y+K DS I +MKG Sbjct: 5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99 HSP 2 Score: 87.4261 bits (215), Expect = 1.626e-20 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A++S GF+I H MKI +A K Sbjct: 147 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 219
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621]) HSP 1 Score: 120.553 bits (301), Expect = 1.895e-32 Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R M+GQAF+I+K+I S++ A R++Q + +DKPM+I Y+K DS I +MKG Sbjct: 5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99 HSP 2 Score: 88.1965 bits (217), Expect = 2.306e-20 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A++S GF+I H MKI +A K Sbjct: 200 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621]) HSP 1 Score: 120.553 bits (301), Expect = 1.895e-32 Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327 E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R M+GQAF+I+K+I S++ A R++Q + +DKPM+I Y+K DS I +MKG Sbjct: 5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99 HSP 2 Score: 88.1965 bits (217), Expect = 2.306e-20 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 LF++NLP+ET + ML+MLF+QF GF+EVR R+D+AFVE++ E QA A++S GF+I H MKI +A K Sbjct: 200 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: srsf10b (serine and arginine rich splicing factor 10 [Source:NCBI gene;Acc:101171844]) HSP 1 Score: 50.447 bits (119), Expect = 4.744e-7 Identity = 29/96 (30.21%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDI-----IASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMK 324 PN +L+V N++D+ + DL++ FG+YG IVD+ +R P RG A+I ++D+ + A +L + + ++I +A+ D +MK Sbjct: 8 PNTSLFVRNISDESRPEDLRRE----FGRYGPIVDVYIPLDFYTRQP--RGFAYIQFEDVRDAEDALHSLDRKWVCGRQIEIQFAQGDRKTPNQMK 97
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017078.1 (SMESG000017078.1) HSP 1 Score: 409.068 bits (1050), Expect = 3.406e-146 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 Query: 40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQPPAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK Sbjct: 1 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQPPAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 237
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017061.1 (SMESG000017061.1) HSP 1 Score: 53.9138 bits (128), Expect = 1.343e-8 Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYAN 747 L V+N P +A L M F++ GF ++ + V+FV Y T QAKDA +Y G+Q+ +H++++ Y+N Sbjct: 132 LSVTNYPASCNEAALIMFFAKMDGFLQLFSHRTKKHVSFVIYSTIDQAKDALSTYHGYQMDHDHKLQVCYSN 203
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000078309.1 (SMESG000078309.1) HSP 1 Score: 45.8246 bits (107), Expect = 1.586e-6 Identity = 25/87 (28.74%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 49 RPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPV------MRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA 291 R T+YV N+ + +++ +LK+ +FG+YG +I+A+ PV +G AF+ ++DI + +F LQ Y++ + +++ +A Sbjct: 3 RSTTTIYVGNIPEDLRRDELKR----IFGRYG---NIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 82 The following BLAST results are available for this feature:
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 3
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004517 ID=SMED30004517|Name=U2 small nuclear ribonucleoprotein B|organism=Schmidtea mediterranea sexual|type=transcript|length=783bpback to top protein sequence of SMED30004517-orf-1 >SMED30004517-orf-1 ID=SMED30004517-orf-1|Name=SMED30004517-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=238bp MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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