U2 small nuclear ribonucleoprotein B

Overview
NameU2 small nuclear ribonucleoprotein B
Smed IDSMED30004517
Length (bp)783
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of U2 small nuclear ribonucleoprotein B (SMED30004517) t-SNE clustered cells

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein B (SMED30004517) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of U2 small nuclear ribonucleoprotein B (SMED30004517) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein B (SMED30004517) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30004517

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30004517h1SMcG0020817 SmedASXL_019477SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30004517h1SMcG0020817 SmedASXL_019477SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30004517h1SMcG0020817 dd_Smed_v4_2444_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004517h1SMcG0020817 dd_Smed_v4_2444_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004517h1SMcG0020817 dd_Smed_v4_2444_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004517h1SMcG0020817 dd_Smed_v4_2444_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPB2 (small nuclear ribonucleoprotein polypeptide B2 [Source:HGNC Symbol;Acc:HGNC:11155])

HSP 1 Score: 181.415 bits (459), Expect = 2.328e-56
Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +  K+++++K K                   VE T    N +  Q        Q      P          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPB2 (small nuclear ribonucleoprotein polypeptide B2 [Source:HGNC Symbol;Acc:HGNC:11155])

HSP 1 Score: 181.415 bits (459), Expect = 2.328e-56
Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +  K+++++K K                   VE T    N +  Q        Q      P          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 129.798 bits (325), Expect = 2.766e-37
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 129.798 bits (325), Expect = 3.525e-37
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 129.413 bits (324), Expect = 2.033e-35
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVE 103          

HSP 2 Score: 86.6557 bits (213), Expect = 2.188e-19
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:  210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2])

HSP 1 Score: 145.976 bits (367), Expect = 4.364e-43
Identity = 81/233 (34.76%), Postives = 126/233 (54.08%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            PNHT+YVNNLN+KVKK +LK+SL+ +F Q+G I+ +++ R   MRGQA I++K++ S++ A RALQ +  + KPM+I YA++DS  I+  KG                       V K   +  I  +       +     +  Q   Q         N LF SN+P+ T    +  +FSQF G REVR      D AF+EYE+E  ++ A+++ D F+I    ++ +++A+K
Sbjct:    6 PNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTF---------------------VEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2])

HSP 1 Score: 107.071 bits (266), Expect = 2.539e-28
Identity = 63/208 (30.29%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  127 LFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            +F Q+G I+ +++ R   MRGQA I++K++ S++ A RALQ +  + KPM+I YA++DS  I+  KG                       V K   +  I  +       +     +  Q   Q         N LF SN+P+ T    +  +FSQF G REVR      D AF+EYE+E  ++ A+++ D F+I    ++ +++A+K
Sbjct:    2 VFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTF---------------------VEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 188          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-2 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:Q21322])

HSP 1 Score: 92.4337 bits (228), Expect = 1.133e-22
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            PN TLY+NNLN+K+K  +L+KSL  +F Q+G IV ++  R   MRGQA +I+K++ +++ A  AL  +  ++KPM+I +A++DS  + + KG
Sbjct:    6 PNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKG 97          

HSP 2 Score: 65.4698 bits (158), Expect = 1.077e-12
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF +NLP   T  ML ++F+QF G +++R    R  +AFVE++T+  A  A+ + + F+I   H M+++YA K
Sbjct:  134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4])

HSP 1 Score: 58.151 bits (139), Expect = 1.046e-9
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  520 TCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR-HSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHR--MKIEYA 744
             C+TLFV+NL  E  +  L  +F  F GF  +R H+     VAFVEY   ++A  A  S  GFQI  N R  ++IEYA
Sbjct:  226 ACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYA 303          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4])

HSP 1 Score: 58.151 bits (139), Expect = 1.046e-9
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  520 TCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR-HSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHR--MKIEYA 744
             C+TLFV+NL  E  +  L  +F  F GF  +R H+     VAFVEY   ++A  A  S  GFQI  N R  ++IEYA
Sbjct:  226 ACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYA 303          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: snf (gene:FBgn0003449 transcript:FBtr0070748)

HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-25
Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            ME  PN T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+A +   MRGQAF+I+K+I S++ A R +Q +  +DKPM+I Y+K DS  + ++KG
Sbjct:    1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKG 96          

HSP 2 Score: 89.3521 bits (220), Expect = 3.080e-21
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+ TE Q+  AKE+  GF+I   H MKI +A K
Sbjct:  144 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: Sf3b6 (gene:FBgn0035692 transcript:FBtr0077015)

HSP 1 Score: 44.669 bits (104), Expect = 7.414e-6
Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 1
Query:   55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288
            N  LYV NL  K+   ++    Y +FG++G I  I     P  RG AF++Y+DI  +  A   L  + + ++ + + Y
Sbjct:   14 NRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 87          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2])

HSP 1 Score: 180.259 bits (456), Expect = 4.013e-56
Identity = 100/243 (41.15%), Postives = 148/243 (60.91%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I+DI+A +   MRGQAF+I+K++ ++T A R LQ +  ++KPM+I YAK DS  +++M+G   +        K+  E+      KK  G V T P  P    +TV + ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D++FVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVNTQPPPP----ATVQIPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2])

HSP 1 Score: 180.259 bits (456), Expect = 4.013e-56
Identity = 100/243 (41.15%), Postives = 148/243 (60.91%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I+DI+A +   MRGQAF+I+K++ ++T A R LQ +  ++KPM+I YAK DS  +++M+G   +        K+  E+      KK  G V T P  P    +TV + ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D++FVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVNTQPPPP----ATVQIPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 118.242 bits (295), Expect = 2.774e-32
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K+DS  I +MKG   E
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 118.242 bits (295), Expect = 2.774e-32
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K+DS  I +MKG   E
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 119.013 bits (297), Expect = 1.163e-31
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K+DS  I +MKG   E
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVE 103          

HSP 2 Score: 85.8853 bits (211), Expect = 2.703e-19
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+E+  GF+I  ++ MKI +A K
Sbjct:  209 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 167.933 bits (424), Expect = 5.465e-51
Identity = 99/238 (41.60%), Postives = 143/238 (60.08%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAM-LTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NNL DKVKKP+LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ S+T A R LQ +  ++KPM+I YAK DS  I +MKG   +  K+++++K K + +      K    +  +        +            +Q  Q      N +   N   E T  M L+MLF+QF GF+EVR    R+D+AFVE+E E +A  A+++  GF+I  +H MKI YANK
Sbjct:    1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKKEKKKAKAQEQAANAANKKIGDLVFF----CFFLHYFASNANNAPGASQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 234          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 125.561 bits (314), Expect = 1.195e-34
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            M+ RPNHT+Y+NNL DKVKKP+LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ S+T A R LQ +  ++KPM+I YAK DS  I +MKG
Sbjct:    1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKG 96          

HSP 2 Score: 90.1225 bits (222), Expect = 3.125e-21
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E E +A  A+++  GF+I  +H MKI YANK
Sbjct:  151 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 124.405 bits (311), Expect = 1.201e-33
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   28 FLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
             + V E RPN+T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K+I S+T A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    4 LMAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKG 103          

HSP 2 Score: 87.0409 bits (214), Expect = 1.258e-19
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  526 NTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+ES  GF+I  ++ MKI +A K
Sbjct:  206 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 280          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 124.02 bits (310), Expect = 1.636e-33
Identity = 55/99 (55.56%), Postives = 78/99 (78.79%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            + V E RPN+T+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K+I S+T A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    1 MAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKG 99          

HSP 2 Score: 87.0409 bits (214), Expect = 1.244e-19
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+ES  GF+I  ++ MKI +A K
Sbjct:  210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:548771])

HSP 1 Score: 50.447 bits (119), Expect = 1.526e-6
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 1
Query:   10 FRKYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK 294
             RK  VF       PN  LYV NL+ + ++ DLK    ++FG++          + DI   +   M+GQAFI +     +  A + +  Y L DKPM I +A+
Sbjct:  414 MRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLK----FIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFAR 512          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpb2 (U2 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:104805])

HSP 1 Score: 185.267 bits (469), Expect = 5.794e-58
Identity = 98/254 (38.58%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE-----------------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +                 A+  +   +         G     P +P Y  + +                             LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYI-----------------------------LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56
Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56
Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 183.341 bits (464), Expect = 1.806e-56
Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 144.436 bits (363), Expect = 7.979e-42
Identity = 86/237 (36.29%), Postives = 128/237 (54.01%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVR 618
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 243          
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q9CQI7|RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus OX=10090 GN=Snrpb2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.053e-57
Identity = 98/254 (38.58%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE-----------------ASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +                 A+  +   +         G     P +P Y  + +                             LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYI-----------------------------LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|P08579|RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens OX=9606 GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.118e-55
Identity = 103/243 (42.39%), Postives = 147/243 (60.49%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCN------TLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G +VDI+A +   MRGQAF+I+K++ SST A R LQ +  + KPM+I YAK DS  I++M+G   +  K+++++K K                   VE T    N +  Q        Q      P          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E + QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT------------------VEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q62189|SNRPA_MOUSE (U1 small nuclear ribonucleoprotein A OS=Mus musculus OX=10090 GN=Snrpa PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.264e-55
Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLL-------------NEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQND----------------------------XXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG               ++ +    +  +      +VG V+  P +P   ++  I+ +                               QQ+   Q P      E P  + LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    7 MPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287          
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q0DKM4|RU1A_ORYSJ (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.042e-36
Identity = 86/242 (35.54%), Postives = 133/242 (54.96%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA--------KKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGV-VKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            PN T+Y+NNLN+K+K  +LKKSL  +F Q+G I+D++A +    +GQA+++++D+ S+T A +++Q++   +KPM+I YA        K D T +   +   N+    + +++E+      VG+ V   P +  Y    +        Q+         + E I   N LFV NLP ETT  ML MLF Q+ GF+EVR    +  +AFVEY  E QA  A     GF+I  +++M I YA K
Sbjct:   21 PNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGV--YGAPPL-------SQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253          
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.042e-36
Identity = 86/242 (35.54%), Postives = 133/242 (54.96%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA--------KKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGV-VKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            PN T+Y+NNLN+K+K  +LKKSL  +F Q+G I+D++A +    +GQA+++++D+ S+T A +++Q++   +KPM+I YA        K D T +   +   N+    + +++E+      VG+ V   P +  Y    +        Q+         + E I   N LFV NLP ETT  ML MLF Q+ GF+EVR    +  +AFVEY  E QA  A     GF+I  +++M I YA K
Sbjct:   21 PNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGV--YGAPPL-------SQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253          
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A1S3WV66 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Erinaceus europaeus OX=9365 GN=SNRPA PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.150e-58
Identity = 104/248 (41.94%), Postives = 154/248 (62.10%), Query Frame = 1
Query:   31 LQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXI--------VGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            + V E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR+  MRGQAF+I+K++ S+T A R++Q +  +DKPM+I YAK DS  I +MKG   E  ++R++ K K +            VG   T P   +   S+ + +N                       + LF++NLP+ET++ ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+++  GF+I  N+ MKI +A K
Sbjct:    1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAKGPGVGAPGTLPDSWLLFPSSQLSENP--------------------PNHILFLTNLPEETSELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 228          
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0R3VVA3 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS1310 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.242e-57
Identity = 120/257 (46.69%), Postives = 156/257 (60.70%), Query Frame = 1
Query:   37 VMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIV---------------------GVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYA 744
            VM+ RPNHTLYVNNLNDKVKK DLK++LYYLF  YG +++IIA + P MRGQAFII++ + S+TTA R LQ +QLFDKPM+I YA+K+STQI  ++G+  E  K+++EE+EKR+R+K+                      G    TP     V S    Q D     +                  LFVSNLP+ETT AMLTMLF+QF GF+E R +     + FVEYETE QA  AK +Y GF++   H + + YA
Sbjct:  255 VMDIRPNHTLYVNNLNDKVKKADLKRALYYLFSPYGRVLEIIAMKTPKMRGQAFIIFQALTSATTALRVLQGFQLFDKPMRIQYARKNSTQIEVLQGVNAETQKKKEEEREKRRRRKLAQRQAAAAAAAAAAGGAGAVVNGQAGGTPPASSLVTSAFAFQVDGEVDTEPPN-------------RVLFVSNLPEETTDAMLTMLFNQFSGFKEARRAVG--GIGFVEYETEAQATAAKVTYHGFKLTRTHAISVTYA 496          

HSP 2 Score: 100.523 bits (249), Expect = 2.444e-20
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            PNHT+Y+NNLN+K+K  +LKKSLY +F Q+G I+DII  ++  MRGQAF+++ +I S+ +A  A++ + L++KPM I++A+  S  I + +G
Sbjct:   34 PNHTIYINNLNEKIKTDELKKSLYAVFVQFGQILDIITGKSVKMRGQAFVVFSEISSARSALEAMRGFPLYEKPMCINFARTTSDIIAKREG 125          
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0R3U5E1 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1938 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 6.155e-57
Identity = 120/255 (47.06%), Postives = 156/255 (61.18%), Query Frame = 1
Query:   22 LVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXI--------------VGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYA 744
             V    M+ RPNHTLYVNNLNDK+KK DLK++LYYLF  YG IVDIIA + P MRGQAFIIY+ I S+T A R LQ +QLF+KPM+I YA+K+S+QI  ++G+  E  K+++EE+EKR+R+K+              VG +  TP +   +E                           P    LFVSNLP+ETT AMLTMLF+QF GF+E R +     + FVEYETE QA  AK +Y GF++   H + + YA
Sbjct:  248 FVEFSTMDIRPNHTLYVNNLNDKLKKADLKRALYYLFSPYGRIVDIIAMKTPKMRGQAFIIYQSITSATNASRVLQGFQLFEKPMRIQYARKNSSQIEVLQGVNAETQKKKEEEREKRRRRKLAQRQAAAAAAAAAAVGQLGGTPGVDAEMEG-------------------------EPPNRVLFVSNLPEETTDAMLTMLFNQFSGFKEARRAVG--GIGFVEYETEAQASAAKLTYHGFKLTRTHAISVTYA 475          

HSP 2 Score: 99.3673 bits (246), Expect = 4.593e-20
Identity = 42/92 (45.65%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            PNHT+Y+NNLN+K+K  +LKKSLY +F Q+G I+DII  ++  MRGQAF+++ ++ S+ +A  A++ + L++KPM I++A+  S  I + +G
Sbjct:   34 PNHTIYINNLNEKIKTDELKKSLYAVFVQFGQILDIITGKSVKMRGQAFVVFSEVSSARSALEAMRGFPLYEKPMCINFARTTSDIIAKREG 125          

HSP 3 Score: 59.6918 bits (143), Expect = 1.752e-6
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYET 663
            LF++NLP++  +AML MLF+ F GFRE+R    R+D+AFVE+ T
Sbjct:  210 LFLTNLPEDANEAMLGMLFAPFVGFREIRMVPSRHDIAFVEFST 253          
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A2G9RGL5 (Uncharacterized protein OS=Lithobates catesbeianus OX=8400 GN=AB205_0145490 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.663e-56
Identity = 102/237 (43.04%), Postives = 148/237 (62.45%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NNLNDK+KK +LK+SLY LF Q+G ++DI+A +   MRGQAF+I+K++ SST A R LQ +  FDKPM+I YAK DS  +++M+G   +  K+++++K K + +      K    +P            Q                + P    LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+E E QA  A+++  GF+I  +H MKI YA K
Sbjct:    1 MDIRPNHTVYINNLNDKIKKDELKRSLYALFSQFGHVMDIVALKTTKMRGQAFVIFKELSSSTNALRQLQGFPFFDKPMRIQYAKSDSDLVSKMRGTFADKEKKKEKKKNKPQDQAANAANKKPVQVP-----------GQETDNAAPGSAQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGSARDALQGFKITPSHAMKITYAKK 226          
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: V4A4Z3 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_121828 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.461e-56
Identity = 105/237 (44.30%), Postives = 149/237 (62.87%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M N PNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+A +   MRGQAF+I+K+I S+  A R++Q +  +DKPM+I ++KKDS  I +MKG   E  +R+ ++ E RK+K       T    P  + ST I +                          LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE+ETE QA  AK++  GF+I  ++ MKI YA K
Sbjct:    1 MSNAPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEINSAANALRSMQGFPFYDKPMRISFSKKDSNVIAKMKGTYVEEPRRKRDDDEPRKKKT-KSQANTATAAPTPITSTAIPEQP--------------------PNQILFITNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFETEVQAGVAKDALQGFKITPSNAMKISYAKK 216          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 178.718 bits (452), Expect = 1.335e-55
Identity = 97/242 (40.08%), Postives = 151/242 (62.40%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVG-----VVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  + +M+G   +  K+++++K+ +++           V T P  P    +TV V ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQNAVNTQPAPP----ATVQVPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 178.718 bits (452), Expect = 1.335e-55
Identity = 97/242 (40.08%), Postives = 151/242 (62.40%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVG-----VVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  + +M+G   +  K+++++K+ +++           V T P  P    +TV V ++                        LF++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQNAVNTQPAPP----ATVQVPDNPPNY-------------------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 172.94 bits (437), Expect = 1.992e-53
Identity = 91/238 (38.24%), Postives = 148/238 (62.18%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXX-IVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPNHT+Y+NN+NDK+KK +LK+SLY LF Q+G I++I+A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  + +M+G   +  K+++++K+ +++        + +P +P    + ++                             F++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E+E QA  AK++  GF+I     MKI YA K
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDKEKKKEKKKKAQEQAANAAKKPQVSPFVPDNPPNYIL-----------------------------FLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 209          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:103028350])

HSP 1 Score: 120.553 bits (301), Expect = 2.428e-32
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E R NHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ SR   MRGQAF+I+K++ S++ A R++Q +  +DKPM+I YAK+DS  I +MKG
Sbjct:    5 ELRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMRGQAFVIFKEVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKG 99          

HSP 2 Score: 85.1149 bits (209), Expect = 4.376e-19
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A+E+  GF+I   + MKI +A K
Sbjct:  209 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQTNAMKISFAKK 281          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:103039358])

HSP 1 Score: 46.9802 bits (110), Expect = 9.819e-6
Identity = 30/103 (29.13%), Postives = 49/103 (47.57%), Query Frame = 1
Query:   10 FRKYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK 294
             ++  VF       P   LYV N+  +V++ DLK    Y++G+Y          + DI+  +   M+GQAF+      S+  A R    Y L DKP+ + +A+
Sbjct:  392 IKRMSVFKNYEPGEPTCRLYVKNVAKQVEEKDLK----YIYGRYIDPSSEQERNMFDIVLMKEGRMKGQAFVGLPTEKSAERALRDTNGYVLHDKPLVVQFAR 490          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004128.1 (pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gene:ENSPMAG00000003771.1 transcript:ENSPMAT00000004128.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.9005 bits (237), Expect = 1.356e-24
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   49 RPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE 339
            R + T+Y+N  ++ +   +LKKSLY +F Q+G I+DI+A +   MRGQAF+I+K+I S+T A R++Q +  +DKPM+I Y+K DS  I +MKG   E
Sbjct:    7 RADRTIYIN-YSEVLSPVELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKVDSDIIAKMKGTFVE 102          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006657.1 (pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene:ENSPMAG00000006008.1 transcript:ENSPMAT00000006657.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.0542 bits (105), Expect = 1.346e-6
Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 1
Query:   55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288
            N  LYV NL  K+      + +Y +FG+YG I  I     P  RG A+++Y+DI  +  A   L  + + ++ + + Y
Sbjct:   18 NRILYVRNLPYKI----TAEEMYDIFGKYGAIRQIRVGTTPESRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 45.0542 bits (105), Expect = 8.979e-6
Identity = 35/122 (28.69%), Postives = 55/122 (45.08%), Query Frame = 1
Query:   16 KYLVFLQVMENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQY--------GGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAK----KDSTQITEMKGLLNEAS 345
            K  VF       P   LYV NL+ +V + DLK    ++FG+Y          + D+   R   M+GQAF+       +  A R    Y L  +P+ I YA+    K+  ++ + K  L+ A+
Sbjct:  408 KSSVFKNYSAGEPTCRLYVKNLSRQVSEQDLK----HIFGRYVDFSSDVEKNMFDVRLMREGRMKGQAFVGLPSEREAQKALRDAHGYVLHGRPLVIQYARSARPKEELKVGKKKSSLDAAT 525          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Match: MSL1 (U2B component of U2 snRNP; involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members [Source:SGD;Acc:S000001448])

HSP 1 Score: 53.5286 bits (127), Expect = 7.163e-10
Identity = 26/82 (31.71%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   58 HTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDS 303
            +TLYV+ LN+K+    L+ +L+ LF  +G ++ + +      RGQAFI  + I  ++ A  +L   + F KP+K+ ++K ++
Sbjct:   28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKV-SMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSKSET 108          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO47757 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKX3])

HSP 1 Score: 158.303 bits (399), Expect = 3.674e-48
Identity = 95/237 (40.08%), Postives = 133/237 (56.12%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            MEN PN T+Y+ NLN+K+KK +LKKSLY +F Q+G I+DI+A +   MRGQAF+++KDI S+T A R++Q +  +DKPM+I YAK  S  + + +G              + K+ K           PI     +  Q                        N LF++NLP ETT+ ML+MLF+QF GF+EVR    R D++FVE+E E QA  AK++  GF+I   + M I YA K
Sbjct:    1 MENPPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTF----------VPREKKPKEKRKAPENAGAPIAAPMAIPTQQP------------------DLPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPGRSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO36652 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SI29])

HSP 1 Score: 45.8246 bits (107), Expect = 1.226e-6
Identity = 25/78 (32.05%), Postives = 40/78 (51.28%), Query Frame = 1
Query:   55 NHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 288
            N  LY+ NL  K+      + +Y +FG+YG I  I    AP  RG AF++Y+DI  +  A   L  + +  + + + Y
Sbjct:   18 NRILYIRNLPYKITA----EEMYDIFGKYGAIRQIRLGNAPDTRGTAFVVYEDIFDAKNACDHLSGFNVCGRYLVVLY 91          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:101174159])

HSP 1 Score: 172.94 bits (437), Expect = 2.122e-53
Identity = 92/237 (38.82%), Postives = 147/237 (62.03%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            M+ RPN+T+Y+NN+NDKVKK +LK+SLY LF Q+G I+ ++A +   MRGQAF+++K++ ++T A R LQ +  ++KPM+I YAK DS  I +MKG   +      ++++K+K +++       P + +   S+ +  N                       + LF++NLP+ET + ML+MLF+QF GF+EVR    ++D+AFVE+E++ QA  AK++  GF+I     MKI +A K
Sbjct:    1 MDIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGDKE---KKKEKKKKAQELAANAAKKPAVSLC--SSQVPDNPPN--------------------HILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 212          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 120.939 bits (302), Expect = 3.980e-33
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99          

HSP 2 Score: 87.4261 bits (215), Expect = 1.626e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A++S  GF+I   H MKI +A K
Sbjct:  147 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 219          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 120.553 bits (301), Expect = 1.895e-32
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99          

HSP 2 Score: 88.1965 bits (217), Expect = 2.306e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A++S  GF+I   H MKI +A K
Sbjct:  200 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 120.553 bits (301), Expect = 1.895e-32
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 ENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKG 327
            E RPNHT+Y+NNLN+K+KK +LKKSLY +F Q+G I+DI+ +R   M+GQAF+I+K+I S++ A R++Q +  +DKPM+I Y+K DS  I +MKG
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKG 99          

HSP 2 Score: 88.1965 bits (217), Expect = 2.306e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            LF++NLP+ET + ML+MLF+QF GF+EVR    R+D+AFVE++ E QA  A++S  GF+I   H MKI +A K
Sbjct:  200 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272          
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: srsf10b (serine and arginine rich splicing factor 10 [Source:NCBI gene;Acc:101171844])

HSP 1 Score: 50.447 bits (119), Expect = 4.744e-7
Identity = 29/96 (30.21%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   52 PNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDI-----IASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMK 324
            PN +L+V N++D+ +  DL++     FG+YG IVD+       +R P  RG A+I ++D+  +  A  +L    +  + ++I +A+ D     +MK
Sbjct:    8 PNTSLFVRNISDESRPEDLRRE----FGRYGPIVDVYIPLDFYTRQP--RGFAYIQFEDVRDAEDALHSLDRKWVCGRQIEIQFAQGDRKTPNQMK 97          
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017078.1 (SMESG000017078.1)

HSP 1 Score: 409.068 bits (1050), Expect = 3.406e-146
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
Query:   40 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASXXXXXXXXXXXXXXIVGVVKTTPTIPIYVESTVIVQNDXXXXXXXXXXXXXXXXXXXXTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 750
            MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQPPAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK
Sbjct:    1 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNEASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQPPAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 237          
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017061.1 (SMESG000017061.1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.343e-8
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  532 LFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYAN 747
            L V+N P    +A L M F++  GF ++     +  V+FV Y T  QAKDA  +Y G+Q+  +H++++ Y+N
Sbjct:  132 LSVTNYPASCNEAALIMFFAKMDGFLQLFSHRTKKHVSFVIYSTIDQAKDALSTYHGYQMDHDHKLQVCYSN 203          
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000078309.1 (SMESG000078309.1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.586e-6
Identity = 25/87 (28.74%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   49 RPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPV------MRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYA 291
            R   T+YV N+ + +++ +LK+    +FG+YG   +I+A+  PV       +G AF+ ++DI  +  +F  LQ Y++  + +++ +A
Sbjct:    3 RSTTTIYVGNIPEDLRRDELKR----IFGRYG---NIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 82          
The following BLAST results are available for this feature:
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SNRPB22.328e-5642.39small nuclear ribonucleoprotein polypeptide B2 [So... [more]
SNRPB22.328e-5642.39small nuclear ribonucleoprotein polypeptide B2 [So... [more]
SNRPA2.766e-3755.34small nuclear ribonucleoprotein polypeptide A [Sou... [more]
SNRPA3.525e-3755.34small nuclear ribonucleoprotein polypeptide A [Sou... [more]
SNRPA2.033e-3555.34small nuclear ribonucleoprotein polypeptide A [Sou... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rnp-34.364e-4334.76RNP (RRM RNA binding domain) containing [Source:U... [more]
rnp-32.539e-2830.29RNP (RRM RNA binding domain) containing [Source:U... [more]
rnp-21.133e-2243.48RNP (RRM RNA binding domain) containing [Source:U... [more]
mec-81.046e-943.59Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4... [more]
mec-81.046e-943.59Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
snf7.988e-2552.08gene:FBgn0003449 transcript:FBtr0070748[more]
Sf3b67.414e-630.77gene:FBgn0035692 transcript:FBtr0077015[more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
snrpb24.013e-5641.15small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpb24.013e-5641.15small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpa2.774e-3253.54small nuclear ribonucleoprotein polypeptide A [Sou... [more]
snrpa2.774e-3253.54small nuclear ribonucleoprotein polypeptide A [Sou... [more]
snrpa1.163e-3153.54small nuclear ribonucleoprotein polypeptide A [Sou... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
slc17a65.465e-5141.60solute carrier family 17 member 6 [Source:Xenbase;... [more]
slc17a61.195e-3458.33solute carrier family 17 member 6 [Source:Xenbase;... [more]
tubgcp51.201e-3355.00tubulin gamma complex associated protein 5 [Source... [more]
tubgcp51.636e-3355.56tubulin gamma complex associated protein 5 [Source... [more]
rnpc31.526e-632.04RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Snrpb25.794e-5838.58U2 small nuclear ribonucleoprotein B [Source:MGI S... [more]
Snrpa1.806e-5637.37small nuclear ribonucleoprotein polypeptide A [Sou... [more]
Snrpa1.806e-5637.37small nuclear ribonucleoprotein polypeptide A [Sou... [more]
Snrpa1.806e-5637.37small nuclear ribonucleoprotein polypeptide A [Sou... [more]
Snrpa7.979e-4236.29small nuclear ribonucleoprotein polypeptide A [Sou... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9CQI7|RU2B_MOUSE4.053e-5738.58U2 small nuclear ribonucleoprotein B'' OS=Mus musc... [more]
sp|P08579|RU2B_HUMAN1.118e-5542.39U2 small nuclear ribonucleoprotein B'' OS=Homo sap... [more]
sp|Q62189|SNRPA_MOUSE1.264e-5537.37U1 small nuclear ribonucleoprotein A OS=Mus muscul... [more]
sp|Q0DKM4|RU1A_ORYSJ1.042e-3635.54U1 small nuclear ribonucleoprotein A OS=Oryza sati... [more]
sp|A2Y0J7|RU1A_ORYSI1.042e-3635.54U1 small nuclear ribonucleoprotein A OS=Oryza sati... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3WV667.150e-5841.94U1 small nuclear ribonucleoprotein A isoform X2 OS... [more]
A0A0R3VVA33.242e-5746.69Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
A0A0R3U5E16.155e-5747.06Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A2G9RGL52.663e-5643.04Uncharacterized protein OS=Lithobates catesbeianus... [more]
V4A4Z34.461e-5644.30Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
snrpb21.335e-5540.08small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpb21.335e-5540.08small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpb21.992e-5338.24small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpa2.428e-3255.79small nuclear ribonucleoprotein polypeptide A [Sou... [more]
rnpc39.819e-629.13RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSPMAT00000004128.11.356e-2446.39pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gen... [more]
ENSPMAT00000006657.11.346e-630.77pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene... [more]
rnpc38.979e-628.69RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
MSL17.163e-1031.71U2B component of U2 snRNP; involved in splicing, b... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO477573.674e-4840.08Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO366521.226e-632.05Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
snrpb22.122e-5338.82small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpa3.980e-3354.74small nuclear ribonucleoprotein polypeptide A [Sou... [more]
snrpa1.895e-3254.74small nuclear ribonucleoprotein polypeptide A [Sou... [more]
snrpa1.895e-3254.74small nuclear ribonucleoprotein polypeptide A [Sou... [more]
srsf10b4.744e-730.21serine and arginine rich splicing factor 10 [Sourc... [more]
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BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000017078.13.406e-146100.00SMESG000017078.1[more]
SMESG000017061.11.343e-836.11SMESG000017061.1[more]
SMESG000078309.11.586e-628.74SMESG000078309.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004517 ID=SMED30004517|Name=U2 small nuclear ribonucleoprotein B|organism=Schmidtea mediterranea sexual|type=transcript|length=783bp
AATATTTAATTTAGAAAATATTTAGTATTTTTACAAGTAATGGAAAATAG
GCCAAATCATACATTGTACGTTAATAATCTAAATGACAAAGTCAAGAAAC
CTGATTTGAAGAAGTCACTTTATTATCTTTTTGGCCAATATGGGGGAATT
GTTGATATAATAGCTAGTAGAGCTCCCGTTATGCGTGGTCAAGCATTCAT
TATTTACAAAGATATAGTTTCTTCAACTACAGCTTTTAGAGCTCTGCAAA
ATTATCAGCTATTTGATAAACCCATGAAAATTCATTATGCTAAAAAAGAT
TCTACTCAAATTACAGAAATGAAAGGTCTTCTAAATGAAGCAAGCAAACG
TAGAGATGAGGAAAAAGAAAAGCGGAAAAGAAAGAAGATAGTTGGAGTAG
TTAAAACGACGCCCACGATTCCAATTTATGTGGAGTCCACGGTTATTGTG
CAAAATGATCAAATTCAACAAATACAGCAGCAGCAACCTCCAGCTCAACC
GATACAAGAAGAAATTCCCACTTGCAATACTCTCTTTGTGTCTAACTTGC
CACAAGAGACAACAAAGGCGATGTTAACAATGCTATTCAGTCAATTCAAA
GGATTTCGAGAAGTTCGCCATTCTGCCGAGCGTTATGATGTTGCATTTGT
CGAGTATGAGACCGAACGACAGGCAAAAGATGCCAAGGAAAGTTACGATG
GGTTTCAGATTGTTCTAAATCACCGGATGAAAATTGAATATGCAAATAAA
TAATTTGCAGTTTTTGTAAATATTAAATTTTGT
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protein sequence of SMED30004517-orf-1

>SMED30004517-orf-1 ID=SMED30004517-orf-1|Name=SMED30004517-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=238bp
MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRG
QAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHYAKKDSTQITEMKGLLNE
ASKRRDEEKEKRKRKKIVGVVKTTPTIPIYVESTVIVQNDQIQQIQQQQP
PAQPIQEEIPTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYD
VAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: cellular component
TermDefinition
GO:0019013viral nucleocapsid
GO:0030529intracellular ribonucleoprotein complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..118
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 2..237
NoneNo IPR availablePANTHERPTHR10501:SF13U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 2..237
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 163..232
e-value: 2.0603E-27
score: 98.0247
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 8..85
e-value: 1.51516E-41
score: 134.578
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 164..233
e-value: 6.7E-13
score: 58.8
coord: 8..82
e-value: 4.5E-8
score: 42.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 165..228
e-value: 9.7E-14
score: 51.0
coord: 9..79
e-value: 1.5E-5
score: 24.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..86
score: 12.117
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 163..237
score: 13.567
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 156..237
e-value: 2.5E-19
score: 71.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..105
e-value: 1.8E-24
score: 87.9
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 152..236
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 1..95