SMED30004498

Overview
NameSMED30004498
Smed IDSMED30004498
Length (bp)2168
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004498 (SMED30004498) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004498 (SMED30004498) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004498 (SMED30004498) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004498 (SMED30004498) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30004498

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30004498h1SMcG0006903 SmedASXL_017072SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30004498h1SMcG0006903 dd_Smed_v4_13051_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30004498h1SMcG0006903 dd_Smed_v4_13051_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004498h1SMcG0006903 dd_Smed_v4_13051_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30004498h1SMcG0006903 dd_Smed_v6_13051_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30004498h1SMcG0006903 dd_Smed_v4_13051_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30004498 vs. Planmine SMEST
Match: SMESG000035916.1 (SMESG000035916.1)

HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0
Identity = 638/656 (97.26%), Postives = 639/656 (97.41%), Query Frame = 2 
Query:  155 RDYSVDMSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFXXXXXXXXXXXXXXXXXRIDQMFQEFDLISGSNKRIYEGYGHLVGNXXXXXXXXXXFRKTFHSKNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVXXXXXXXXXXXXXXTASLAYSFSDPSDPPIHLFTDRXXXXXXXXXXXXXXXXXXQLIANINTANKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL 2122
            +DYSVDMSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEELSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSKNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNYNTASLAYSFSDPSDPPIHLFTDRFSSENLFSEK                 NKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL
Sbjct:   15 QDYSVDMSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEELSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSKNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNYNTASLAYSFSDPSDPPIHLFTDRFSSENLFSEK----------------TNKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL 654
[Close]
BLAST of SMED30004498 vs. Planmine SMEST
Match: SMESG000035916.1 (SMESG000035916.1)

HSP 1 Score: 1153.27 bits (2982), Expect = 0.000e+0
Identity = 633/650 (97.38%), Postives = 633/650 (97.38%), Query Frame = 2 
Query:  173 MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFXXXXXXXXXXXXXXXXXRIDQMFQEFDLISGSNKRIYEGYGHLVGNXXXXXXXXXXFRKTFHSKNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVXXXXXXXXXXXXXXTASLAYSFSDPSDPPIHLFTDRXXXXXXXXXXXXXXXXXXQLIANINTANKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL 2122
            MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEELSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSKNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNYNTASLAYSFSDPSDPPIHLFTDRFSSENLFSEK                 NKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL
Sbjct:    1 MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEELSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSKNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNYNTASLAYSFSDPSDPPIHLFTDRFSSENLFSEK----------------TNKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL 634
[Close]
BLAST of SMED30004498 vs. Planmine SMEST
Match: SMESG000035916.1 (SMESG000035916.1)

HSP 1 Score: 1148.27 bits (2969), Expect = 0.000e+0
Identity = 633/653 (96.94%), Postives = 633/653 (96.94%), Query Frame = 2 
Query:  173 MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFXXXXXXXXXXXXXXXXXRIDQMFQEFDLISGSNKRIYEGYGHLVGNXXXXXXXXXXFRKTFHSKN---SQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVXXXXXXXXXXXXXXTASLAYSFSDPSDPPIHLFTDRXXXXXXXXXXXXXXXXXXQLIANINTANKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL 2122
            MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEELSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSKN   SQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNYNTASLAYSFSDPSDPPIHLFTDRFSSENLFSEK                 NKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL
Sbjct:    1 MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEELSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSKNVLNSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTENRDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQSKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYSEIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADMNGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQNSEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCVNQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCFNNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNYNTASLAYSFSDPSDPPIHLFTDRFSSENLFSEK----------------TNKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKRINYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL 637
The following BLAST results are available for this feature:
BLAST of SMED30004498 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004498 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000035916.10.000e+097.26SMESG000035916.1[more]
SMESG000035916.10.000e+097.38SMESG000035916.1[more]
SMESG000035916.10.000e+096.94SMESG000035916.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004498 ID=SMED30004498|Name=SMED30004498|organism=Schmidtea mediterranea sexual|type=transcript|length=2168bp
ATTTTGAAAATTTATTTTAGCAGAAACTTTATGAAGAAAAATAAACTAAT
AACAACTAAATCTGGAAAAAAACAGTATTGAAATTAATAATTTACAGTTT
ATTGATGCCTTAATCTCAATAAAAAAAACTAAATAATACAAAGTTTTTAT
TTCCAGAGATTATTCCGTTGATATGAGCGCCAATCGCTCTGGCCAAGTGC
AAACGTCTCGGTTTTACAAATATCTAAATGATATAATAATTAGACCCACT
CAAGTGCTAATTGAAGAAGAAAGTAATTTCTTGTCTTTAGAAAATGATGA
ACTAAAAAAGAATAATGAAGAGTTATCAAATCGAATTGACCAAATGTTCC
AAGAATTCGATTTGATATCAGGATCCAACAAACGAATATATGAAGGTTAT
GGACATTTAGTCGGGAATTCTAAAAAATCTAAAAAGGACTCTGATAAATT
TCGGAAAACATTTCATTCAAAAAACTCACAAACGAGCACTCAAATAACAA
ATGCAAAGCTCCAATCGTATGATACAGAGAACGATGGCGCTTTGCATGAA
ATACAGAAGAAAGAAAATGAGGCACGCTTGGACAATAGAACTACAGTACT
ACCAATAAAAAAAACGGAAAATCGTGATTCTGTCAATTTCCCGTTAGAAA
TCAAATTGAAAAGCGTTCAAAATCAAAGTGAAATGCTGCAACGAGACTCT
GAAACCGTTTCCAAATCATTGAAAGGATGTCGTAAGGAAAACTCCATGGC
ACCAGAACAAGTGAAAACGCAATCAAAACAATCCGATAGAAGTTCCTCGC
CAATTTATCTTGACATATTTGACAATTCGGACCAAGCATTAAAATTTAAA
TCTGAACATGAAAAATGTAACATTCAAAGAAATAGTAAAAACACAAATTC
ATTAGTTGCGAAAATTTACTCAGAAATCCCCGTATTGGGGACCCTGGCAG
AATTGCCGAACGAAACCGGATTGGATACTCAAAGCAAATTTATCAATCCG
AGTGCGAATTACCCTGAAGATCTGCAATACCTACACCCAGAAGAAGATTT
CAATAAGGAAATTGCAGATATGAATGGTAATATCGTTAGGAATTCTACCT
TAATATCATTGAGCAACAAATCCGACAATTTGACGTCAATTGACACAATT
GGACTCTCTGTCCACAATCTTCTAGATTTGTCAGAAACTCAGAAAGCCAT
CATGAATTTAATTTCACAAAATTCCGAAATTATTCAGGATTTACATAAAG
AGCAGTCCATGTTATCAAAGTCCAGATCGACTGAGTCCCTTGAAAGTCAA
ATCTACCGCGGAACAAAAAACTCCAAGACTTGTCAAAATTATCCCGCAAA
TGAAAACAGTTCGATGTGCGTTAATCAATCCGTCCACTGCGTAAATGAGA
GTGCCCAAATTTTACGTAAAATCGATGAGCAAAACATTAAAATAGAAAAT
TTGTCCGAAACTCTGTCAATGATATTAAACAAAACGGATGACATAAAAAC
CCCCTCTACTAACCGTTGCTTTAACAATGAATCAACTAGTAAATTAGAAC
AAAATTCTCTACTCAATAAAGAATTACATCATCATAAAGACTCGGATATT
GCCAAATATACGCAATCTTTAGAGTTTTCTGTAAATAATCATAACGATAA
TGATACAATTAATGACAATTATAACACTGCATCACTTGCATACTCATTTT
CAGACCCCAGTGACCCCCCCATTCATTTATTTACCGATAGGTTTTCCTCT
GAAAATCTTTTCTCTGAAAAAAGTAATAATGAAAATGAAAATTTTCAACT
AATTGCAAATATAAATACAGCAAACAAAAGACATTCAAATGCCAAAAAAC
AGACAGAAAATCTGGAAAATATTAATTCCTTTTTGACTAATGAAGAGACA
ATTGTCAAGACTGAAACTTTGTCATTGTCACAGAATCAACCAATGCCAAA
ATCGTGTAAAATACCGAAAAGAATTAATTATAATAATGGAAAACTTCAAT
CTAAATCTCATGATAAATTTGAAATTTTATTTTCAAATGATTTAGAATCA
TCATATGAAACCCTTTATGATCCAATACTTAGTGCAAGATCACTTGTCAA
TGATGAAAATATAGCTTATCTTTAGTAAAATAATATATAAATGTTATATG
AATAAACATTTGGGCTGA
back to top

protein sequence of SMED30004498-orf-1

>SMED30004498-orf-1 ID=SMED30004498-orf-1|Name=SMED30004498-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=651bp
MSANRSGQVQTSRFYKYLNDIIIRPTQVLIEEESNFLSLENDELKKNNEE
LSNRIDQMFQEFDLISGSNKRIYEGYGHLVGNSKKSKKDSDKFRKTFHSK
NSQTSTQITNAKLQSYDTENDGALHEIQKKENEARLDNRTTVLPIKKTEN
RDSVNFPLEIKLKSVQNQSEMLQRDSETVSKSLKGCRKENSMAPEQVKTQ
SKQSDRSSSPIYLDIFDNSDQALKFKSEHEKCNIQRNSKNTNSLVAKIYS
EIPVLGTLAELPNETGLDTQSKFINPSANYPEDLQYLHPEEDFNKEIADM
NGNIVRNSTLISLSNKSDNLTSIDTIGLSVHNLLDLSETQKAIMNLISQN
SEIIQDLHKEQSMLSKSRSTESLESQIYRGTKNSKTCQNYPANENSSMCV
NQSVHCVNESAQILRKIDEQNIKIENLSETLSMILNKTDDIKTPSTNRCF
NNESTSKLEQNSLLNKELHHHKDSDIAKYTQSLEFSVNNHNDNDTINDNY
NTASLAYSFSDPSDPPIHLFTDRFSSENLFSEKSNNENENFQLIANINTA
NKRHSNAKKQTENLENINSFLTNEETIVKTETLSLSQNQPMPKSCKIPKR
INYNNGKLQSKSHDKFEILFSNDLESSYETLYDPILSARSLVNDENIAYL
*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 410..437
NoneNo IPR availableCOILSCoilCoilcoord: 113..133
NoneNo IPR availableCOILSCoilCoilcoord: 547..574
NoneNo IPR availableCOILSCoilCoilcoord: 34..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..208