SMED30004453

Overview
NameSMED30004453
Smed IDSMED30004453
Length (bp)960
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004453 (SMED30004453) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004453 (SMED30004453) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004453 (SMED30004453) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004453 (SMED30004453) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30004453

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30004453SMESG000038305.1 Contig3547GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004453SMESG000038305.1 SMESG000035859.1 Contig41928newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004453SMESG000038305.1 SMESG000035859.1 Contig41928uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
dorsal region of the epidermisSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
ciliated epithelial cellSMED30004453SMESG000038305.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_2262_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30004453 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.031169:4125..5083 +4472
v31.002571:1564..2523 -4438
Homology
[Close]
BLAST of SMED30004453 vs. TrEMBL
Match: I1ZIC2 (Uncharacterized protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.910e-71
Identity = 131/294 (44.56%), Postives = 180/294 (61.22%), Query Frame = 1 
Query:   64 MKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIGDPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPVSYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKTLPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNILAD 945
            M H I+ A++LR+AM + Y  DHVVELQLI AVLLE  I     E  +  A +FT YFN+ WNL T  +K N+ KK  V+ YI+WKY+ +       V +TI  IYSFYSKNR  V + I   +   +++F +VE +L  LL+C  C HPS+ F D  +   E+Y  L T+ NLDHIVE QII+ VL + ++++I +AAKFA YFN DWNF+I+P+  N  KG+ V+ WL        +T P      I  I +TY+ NR  V  +I+NDNS+  ++R LF  VE  L N+L +
Sbjct:    1 MGHTIL-ARELREAMKEQYSIDHVVELQLIVAVLLENGID----EKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKF-DFEIYEKEIYKHLSTKNNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWL----KSDLRTKPG----VINAISQTYQSNRETVKFFIKNDNSLNQSERDLFIKVEITLNNLLTN 280
[Close]
BLAST of SMED30004453 vs. Planmine SMEST
Match: SMESG000038305.1 (SMESG000038305.1)

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 271/292 (92.81%), Postives = 280/292 (95.89%), Query Frame = 1 
Query:   64 MKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIGDPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPVSYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKTLPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL 939
            MK IIISAKKLRQAMS+HYCTDHVVELQLIAAVLLEKDIGDPYK+YDLSAAPKFTKYFNRSWNLTTM KK+NEQKKTNVLKYI+WKYDPVS SVD NVLKTIY IYSFY +NRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVP+N N+ KGANV AWLDWVYS+SQKTLP +IFHSI FIFRTY RNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL
Sbjct:    1 MKDIIISAKKLRQAMSNHYCTDHVVELQLIAAVLLEKDIGDPYKKYDLSAAPKFTKYFNRSWNLTTMTKKENEQKKTNVLKYIRWKYDPVSCSVDDNVLKTIYYIYSFYFENRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPENINKRKGANVHAWLDWVYSNSQKTLPIYIFHSIGFIFRTYNRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL 292
[Close]
BLAST of SMED30004453 vs. Planmine SMEST
Match: SMESG000038305.1 (SMESG000038305.1)

HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 271/292 (92.81%), Postives = 280/292 (95.89%), Query Frame = 1 
Query:   64 MKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIGDPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPVSYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKTLPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL 939
            MK IIISAKKLRQAMS+HYCTDHVVELQLIAAVLLEKDIGDPYK+YDLSAAPKFTKYFNRSWNLTTM KK+NEQKKTNVLKYI+WKYDPVS SVD NVLKTIY IYSFY +NRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVP+N N+ KGANV AWLDWVYS+SQKTLP +IFHSI FIFRTY RNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL
Sbjct:    1 MKDIIISAKKLRQAMSNHYCTDHVVELQLIAAVLLEKDIGDPYKKYDLSAAPKFTKYFNRSWNLTTMTKKENEQKKTNVLKYIRWKYDPVSCSVDDNVLKTIYYIYSFYFENRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPENINKRKGANVHAWLDWVYSNSQKTLPIYIFHSIGFIFRTYNRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL 292
[Close]
BLAST of SMED30004453 vs. Planmine SMEST
Match: SMESG000038305.1 (SMESG000038305.1)

HSP 1 Score: 567 bits (1460), Expect = 0.000e+0
Identity = 271/292 (92.81%), Postives = 280/292 (95.89%), Query Frame = 1 
Query:   64 MKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIGDPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPVSYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKTLPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL 939
            MK IIISAKKLRQAMS+HYCTDHVVELQLIAAVLLEKDIGDPYK+YDLSAAPKFTKYFNRSWNLTTM KK+NEQKKTNVLKYI+WKYDPVS SVD NVLKTIY IYSFY +NRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVP+N N+ KGANV AWLDWVYS+SQKTLP +IFHSI FIFRTY RNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL
Sbjct:    1 MKDIIISAKKLRQAMSNHYCTDHVVELQLIAAVLLEKDIGDPYKKYDLSAAPKFTKYFNRSWNLTTMTKKENEQKKTNVLKYIRWKYDPVSCSVDDNVLKTIYYIYSFYFENRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPENINKRKGANVHAWLDWVYSNSQKTLPIYIFHSIGFIFRTYNRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNIL 292
[Close]
BLAST of SMED30004453 vs. Planmine SMEST
Match: SMESG000035867.1 (SMESG000035867.1)

HSP 1 Score: 236.498 bits (602), Expect = 1.071e-76
Identity = 132/294 (44.90%), Postives = 181/294 (61.56%), Query Frame = 1 
Query:   64 MKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIGDPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPVSYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKTLPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNILAD 945
            M H I+ A++LR+AM + Y  DHVVELQLI AVLLE  I     E  +  A +FT YFN+ WNL T  +K N+ KK  V+ YI+WKY+ +       V +TI  IYSFYSKNR  V + I   +   +++F +VE +L  LL+C  C HPS+ F D  +   E+Y  L T+ NLDHIVE QII+ VL + ++++I +AAKFA YFN DWNF+I+P+  N  KG+ V+ WL        +T P      I  I +TY+ NR  V  +I+NDNS+  ++R LFF VE  L N+L +
Sbjct:    1 MGHTIL-ARELREAMKEQYSIDHVVELQLIVAVLLESGID----EKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKF-DFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENSNKGSIVKNWL----KSDLRTKPG----VINAISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEITLNNLLTN 280
[Close]
BLAST of SMED30004453 vs. Planmine SMEST
Match: SMESG000038300.1 (SMESG000038300.1)

HSP 1 Score: 235.728 bits (600), Expect = 2.008e-76
Identity = 132/294 (44.90%), Postives = 181/294 (61.56%), Query Frame = 1 
Query:   64 MKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIGDPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPVSYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFMLLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEKNVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKTLPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYNILAD 945
            M H I+ A++LR+AM + Y  DHVVELQLI AVLLE  I     E  +  A +FT YFN+ WNL T  +K N+ KK  V+ YI+WKY+ +       V +TI  IYSFYSKNR  V + I   +   +++F +VE +L  LL+C  C HPS+ F D  +   E+Y  L T+ NLDHIVE QII+ VL + ++++I +AAKFA YFN DWNF+I+P+  N  KG+ V+ WL        +T P      I  I +TY+ NR  V  +I+NDNS+  ++R LFF VE  L N+L +
Sbjct:    1 MGHTIL-ARELREAMKEQYSIDHVVELQLIVAVLLENGID----EKQIEIATEFTNYFNKEWNLQTKPRKDNQSKKVAVINYIKWKYNSLIGEPSTFVFETISEIYSFYSKNRTLVSNEIKGVKEPLKQKFLQVEKALINLLECRNCKHPSLKF-DFEIYEKEIYKHLSTKKNLDHIVEFQIIADVLAKNDIKNIDVAAKFAKYFNKDWNFKIIPREENYNKGSIVKNWL----KSDLRTKPG----VINVISQTYQSNRETVKFFIKNDNSLNQSERDLFFKVEITLNNLLTN 280
The following BLAST results are available for this feature:
BLAST of SMED30004453 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
I1ZIC21.910e-7144.56Uncharacterized protein OS=Schmidtea mediterranea ... [more]
back to top
BLAST of SMED30004453 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004453 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000038305.10.000e+092.81SMESG000038305.1[more]
SMESG000038305.10.000e+092.81SMESG000038305.1[more]
SMESG000038305.10.000e+092.81SMESG000038305.1[more]
SMESG000035867.11.071e-7644.90SMESG000035867.1[more]
SMESG000038300.12.008e-7644.90SMESG000038300.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004453 ID=SMED30004453|Name=SMED30004453|organism=Schmidtea mediterranea sexual|type=transcript|length=960bp
AAATAACTATTTCTAAAAACTGGCGCTATTTAAATGGCATTTCAACTTGA
GCGGTTTACTAAAATGAAACATATAATTATTAGTGCTAAAAAGCTTCGTC
AAGCGATGTCAGATCATTATTGTACGGATCATGTAGTAGAATTGCAATTA
ATTGCTGCGGTTTTGTTAGAAAAGGATATTGGAGATCCGTATAAGGAATA
CGACTTATCTGCGGCTCCTAAATTCACCAAATATTTCAATAGAAGCTGGA
ATTTAACAACAATGGCAAAAAAAAAGAATGAACAGAAAAAGACAAATGTA
TTAAAATATATTCAATGGAAATATGATCCAGTTAGCTATAGTGTTGATGC
TAATGTGTTGAAAACTATTTATTGTATATATTCGTTCTATTCCAAAAATC
GCTATCAAGTTCTTGATGCAATTGACAACGATGAAATAGGGCATCGAAAG
AGGTTCCGAGAGGTTGAATATTCCTTATTTATGTTATTAAAGTGCAGCCG
TTGTCCTCACCCTTCTATAAACTTCGGCGATATTAGGCTCGAAACATCCG
AATTATATCACTGTTTGCAAACACAATATAACCTGGATCACATTGTGGAA
CTACAAATTATCTCAACGGTTTTGACTGAAAAAAATGTCCGTGATATTCA
TATTGCAGCAAAATTCGCTGGCTATTTTAATGATGATTGGAACTTTCAAA
TTGTACCTCAAAACAGAAACGAAGGAAAAGGTGCAAACGTTCGTGCTTGG
CTCGATTGGGTTTATTCAGACAGTCAGAAAACATTACCAAATCACATTTT
TCATTCGATTGCCTTTATTTTCCGCACGTATAAACGCAATCGGTCCATTG
TCATAAATTATATAAGGAATGACAATTCTATAACTGGCAATGATAGGAGA
TTGTTTTTTAACGTTGAGAAAGATCTGTATAATATTTTAGCAGATTAAAC
AATAAAATTG
back to top

protein sequence of SMED30004453-orf-1

>SMED30004453-orf-1 ID=SMED30004453-orf-1|Name=SMED30004453-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=305bp
MAFQLERFTKMKHIIISAKKLRQAMSDHYCTDHVVELQLIAAVLLEKDIG
DPYKEYDLSAAPKFTKYFNRSWNLTTMAKKKNEQKKTNVLKYIQWKYDPV
SYSVDANVLKTIYCIYSFYSKNRYQVLDAIDNDEIGHRKRFREVEYSLFM
LLKCSRCPHPSINFGDIRLETSELYHCLQTQYNLDHIVELQIISTVLTEK
NVRDIHIAAKFAGYFNDDWNFQIVPQNRNEGKGANVRAWLDWVYSDSQKT
LPNHIFHSIAFIFRTYKRNRSIVINYIRNDNSITGNDRRLFFNVEKDLYN
ILAD*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000054dorsal region of the epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000106ciliated epithelial cell
PLANA:0002032epidermal cell
PLANA:0003117parapharyngeal cell