EF-hand domain-containing protein

Overview
NameEF-hand domain-containing protein
Smed IDSMED30004423
Length (bp)705
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of EF-hand domain-containing protein (SMED30004423) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for EF-hand domain-containing protein (SMED30004423) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30004423

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30004423SMESG000004207.1 SmedASXL_001825SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30004423SMESG000004207.1 dd_Smed_v4_14319_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30004423SMESG000004207.1 dd_Smed_v4_14319_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004423SMESG000004207.1 dd_Smed_v4_14319_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30004423SMESG000004207.1 dd_Smed_v4_14319_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30004423SMESG000004207.1 dd_Smed_v6_14319_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of EF-hand domain-containing protein vs. Ensembl Fly
Match: CG13449 (gene:FBgn0036520 transcript:FBtr0332094)

HSP 1 Score: 47.7506 bits (112), Expect = 1.771e-6
Identity = 44/183 (24.04%), Postives = 80/183 (43.72%), Query Frame = 1 
Query:  139 DFEIEPYTSLSFSQNLQRNG-RFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKK----------------------HKTNENFIPFRRFELAINDVSICAVGHEDISMLLEV----SQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQKEGVEKADFHSLKFKLKNVNI 606
            D ++ P T+    +   ++  RF +P+D+  L+ MTP +YL +Y  V  +R+ LY+ VF K                      +K  E  + ++    A+ DV       E++   L +    +Q     DF    + G+ + A+RL  +     D    D  + +EKADF+S++  + N  +
Sbjct:   13 DDKVSPETTSKMPRKFSKSATRFDVPMDLSMLKNMTPWDYLSKYVWVSQQRKQLYKRVFLKYLSRIEEPESELAAMGNDELPEYKYRERTLVWQSLPQALEDVLEFHGTEENVQGTLRMLGYDAQASGDLDF--RAWCGIVSFAERLALADESGSD----DSCDELEKADFNSMEQIMPNFTV 189
[Close]
BLAST of EF-hand domain-containing protein vs. Ensembl Fly
Match: CG13449 (gene:FBgn0036520 transcript:FBtr0075590)

HSP 1 Score: 46.595 bits (109), Expect = 9.733e-6
Identity = 44/183 (24.04%), Postives = 80/183 (43.72%), Query Frame = 1 
Query:  139 DFEIEPYTSLSFSQNLQRNG-RFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKK----------------------HKTNENFIPFRRFELAINDVSICAVGHEDISMLLEV----SQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQKEGVEKADFHSLKFKLKNVNI 606
            D ++ P T+    +   ++  RF +P+D+  L+ MTP +YL +Y  V  +R+ LY+ VF K                      +K  E  + ++    A+ DV       E++   L +    +Q     DF    + G+ + A+RL  +     D    D  + +EKADF+S++  + N  +
Sbjct:  375 DDKVSPETTSKMPRKFSKSATRFDVPMDLSMLKNMTPWDYLSKYVWVSQQRKQLYKRVFLKYLSRIEEPESELAAMGNDELPEYKYRERTLVWQSLPQALEDVLEFHGTEENVQGTLRMLGYDAQASGDLDF--RAWCGIVSFAERLALADESGSD----DSCDELEKADFNSMEQIMPNFTV 551
[Close]
BLAST of EF-hand domain-containing protein vs. TrEMBL
Match: C3ZHU2 (EF-hand domain-containing protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_89390 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.530e-20
Identity = 60/165 (36.36%), Postives = 95/165 (57.58%), Query Frame = 1 
Query:  133 MQDFEIEPYTSLSFSQN---LQRN-GRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKK-HKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPE--DEKILDQKEGVEKADFHSLKFKLKNVNI 606
            +Q+FE++     ++ Q    L R   RF+LP+D+R LE M+P EYL  Y +V  RR+ LY+  F K  +  +  I  +  + A+  + +  V  E +  +L+V Q  + T F   LF  VCALA+R++++ FV E  D+ +  QKE VE ADF +L++KL  V +
Sbjct:  587 VQEFEVKRPKQQAWLQGRLALSRQISRFELPMDMRLLEGMSPIEYLSNYCIVSKRRQNLYKQSFTKADRDRDGIISVKELDKALKQIHVDGVTTEQVQKILDVIQATDDTKFDAKLFTAVCALAERMLYTYFVTEDTDDIMYSQKERVEDADFCALEWKLHGVKV 751
[Close]
BLAST of EF-hand domain-containing protein vs. TrEMBL
Match: A0A1S3KHV3 (uncharacterized protein LOC106181848 OS=Lingula unguis OX=7574 GN=LOC106181848 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-19
Identity = 46/140 (32.86%), Postives = 83/140 (59.29%), Query Frame = 1 
Query:  187 QRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPED--EKILDQKEGVEKADFHSLKFKLKNV 600
            ++  RF+LP+D++ LE M+P +YL +Y  V  +R A+Y+  F KH+     + F++ +  +NDV    +  E    +  + Q+ E T     LF G+ AL +RL++++F+ ED  + +  QKE +E ADF +L++K + +
Sbjct:   47 KQASRFELPMDMKLLETMSPQDYLREYCKVSSKRTAIYKKFFDKHREKTFNVTFQKLDTVLNDVLAHPISKETFQDVCSLVQLDENTSIDYKLFAGIAALCERLLYTRFITEDTADMVEYQKERIECADFTALEWKFQGI 186
[Close]
BLAST of EF-hand domain-containing protein vs. TrEMBL
Match: A0A3S1B4L8 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_012476 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.718e-19
Identity = 51/142 (35.92%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:  190 RNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTNENFIPFRR-FELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQ--KEGVEKADFHSLKFKLKNVNI 606
            ++ RF+LP+D++ LEKM+P +YL +Y V+  RR+ LYQ +F+KH+     I  +    LA+ +V + A+    ++ L ++  I E T     LF G+ ALA+R+++  ++ ED     +  KE VE ADF +L++KL  V +
Sbjct:  246 QSSRFELPMDMKSLEKMSPCDYLRKYCVISNRRKTLYQKIFQKHRERGGHILGKNPLSLALQEVLVNALSERHLAELCDILDIDETTSVDLQLFSGMAALAERILYPDYITEDTSECTEYHKEKVECADFCALQWKLHGVQV 387
[Close]
BLAST of EF-hand domain-containing protein vs. TrEMBL
Match: A0A1S3K3G3 (serine/arginine repetitive matrix protein 1 OS=Lingula unguis OX=7574 GN=LOC106178440 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.723e-19
Identity = 47/140 (33.57%), Postives = 83/140 (59.29%), Query Frame = 1 
Query:  187 QRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPED--EKILDQKEGVEKADFHSLKFKLKNV 600
            ++  RF+LP+D++ LE M P +YL +Y  V  +R A+Y+  F KH+     + F++ +  +NDV    +G E    +  + Q+ E T     LF G+ AL +RL++++F+ ED  + +  QKE +E ADF +L++K + +
Sbjct:  565 KQASRFELPMDMKLLETMNPQDYLREYCKVSSKRTAIYKKFFDKHREKTFNVTFQKLDTVLNDVLAHPIGKETFQDVCSLVQLDENTSIDYKLFAGIAALCERLLYTRFITEDTADMVEYQKERIECADFTALEWKFQGI 704
[Close]
BLAST of EF-hand domain-containing protein vs. TrEMBL
Match: A7STV8 (Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g247384 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.234e-17
Identity = 45/142 (31.69%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:  187 QRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKK-HKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQ-KEGVEKADFHSLKFKLKNVNI 606
            ++  RF+LP+D++ LE M+  +YL QY ++  RR+ALY+ +F+K  K  +  I +R  + A+ +V + ++    +  + E+ +  + T F+   F  + A ++R++F+ FV E+ + L+  +E +E+ADF SLK KL    +
Sbjct:  754 KQTSRFELPMDVKVLESMSAMDYLTQYCIISTRRKALYKNIFQKTDKDRDGIISYRELDKALKEVHVDSINTSQVRQIAEMVEADDKTKFNLKQFSAIAAFSERILFADFVTEETRGLNNTREIIEEADFCSLKSKLDGFKV 895
[Close]
BLAST of EF-hand domain-containing protein vs. Ensembl Nematostella
Match: EDO32837 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7STV8])

HSP 1 Score: 92.0485 bits (227), Expect = 1.707e-21
Identity = 45/142 (31.69%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:  187 QRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKK-HKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQ-KEGVEKADFHSLKFKLKNVNI 606
            ++  RF+LP+D++ LE M+  +YL QY ++  RR+ALY+ +F+K  K  +  I +R  + A+ +V + ++    +  + E+ +  + T F+   F  + A ++R++F+ FV E+ + L+  +E +E+ADF SLK KL    +
Sbjct:  754 KQTSRFELPMDVKVLESMSAMDYLTQYCIISTRRKALYKNIFQKTDKDRDGIISYRELDKALKEVHVDSINTSQVRQIAEMVEADDKTKFNLKQFSAIAAFSERILFADFVTEETRGLNNTREIIEEADFCSLKSKLDGFKV 895
[Close]
BLAST of EF-hand domain-containing protein vs. Planmine SMEST
Match: SMESG000004207.1 (SMESG000004207.1)

HSP 1 Score: 325.094 bits (832), Expect = 1.543e-114
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 
Query:  133 MQDFEIEPYTSLSFSQNLQRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQKEGVEKADFHSLKFKLKNVNI 606
            MQDFEIEPYTSLSFSQNLQRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQKEGVEKADFHSLKFKLKNVNI
Sbjct:    1 MQDFEIEPYTSLSFSQNLQRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQKEGVEKADFHSLKFKLKNVNI 158
[Close]
BLAST of EF-hand domain-containing protein vs. Planmine SMEST
Match: SMESG000043291.1 (SMESG000043291.1)

HSP 1 Score: 53.1434 bits (126), Expect = 4.022e-8
Identity = 37/139 (26.62%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:  199 RFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTN-ENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDE-KILDQKEGV-EKADFHSLKFKLKNVNI 606
            +F LP ++  L+      YL +YS +   R A YQ  + K++ + E  +P  +  L IND+    +  +  + L ++ ++KE +         VCA+A+R+ F+  + +D     +  +G  EK DF ++  KL+N ++
Sbjct:  177 KFNLPTNLELLKDDDTLSYLEKYSWICDSRLAYYQKEYSKYRDHRETSLPLSKLFLLINDILANTLTEKQFTTLCQILELKENSTIQFKHIFHVCAVAERMFFTMNLSQDSGNAFEINKGFQEKIDFTNIIHKLQNYSV 315
[Close]
BLAST of EF-hand domain-containing protein vs. Planmine SMEST
Match: SMESG000043291.1 (SMESG000043291.1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.180e-8
Identity = 37/139 (26.62%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:  199 RFQLPLDIRKLEKMTPSEYLCQYSVVLLRREALYQTVFKKHKTN-ENFIPFRRFELAINDVSICAVGHEDISMLLEVSQIKEGTDFSESLFRGVCALADRLIFSKFVPEDE-KILDQKEGV-EKADFHSLKFKLKNVNI 606
            +F LP ++  L+      YL +YS +   R A YQ  + K++ + E  +P  +  L IND+    +  +  + L ++ ++KE +         VCA+A+R+ F+  + +D     +  +G  EK DF ++  KL+N ++
Sbjct:  193 KFNLPTNLELLKDDDTLSYLEKYSWICDSRLAYYQKEYSKYRDHRETSLPLSKLFLLINDILANTLTEKQFTTLCQILELKENSTIQFKHIFHVCAVAERMFFTMNLSQDSGNAFEINKGFQEKIDFTNIIHKLQNYSV 331
The following BLAST results are available for this feature:
BLAST of EF-hand domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG134491.771e-624.04gene:FBgn0036520 transcript:FBtr0332094[more]
CG134499.733e-624.04gene:FBgn0036520 transcript:FBtr0075590[more]
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
C3ZHU21.530e-2036.36EF-hand domain-containing protein OS=Branchiostoma... [more]
A0A1S3KHV31.009e-1932.86uncharacterized protein LOC106181848 OS=Lingula un... [more]
A0A3S1B4L83.718e-1935.92Uncharacterized protein (Fragment) OS=Elysia chlor... [more]
A0A1S3K3G33.723e-1933.57serine/arginine repetitive matrix protein 1 OS=Lin... [more]
A7STV81.234e-1731.69Predicted protein OS=Nematostella vectensis OX=453... [more]
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO328371.707e-2131.69Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of EF-hand domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EF-hand domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000004207.11.543e-114100.00SMESG000004207.1[more]
SMESG000043291.14.022e-826.62SMESG000043291.1[more]
SMESG000043291.15.180e-826.62SMESG000043291.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004423 ID=SMED30004423|Name=EF-hand domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=705bp
TCAGCAGTATTTTTGTTATTGGTTTCTGTCTTATCAAGTGAATAATTTAT
TATTCTTTACTATTATTTGTATCATTTATTGGAATATATATACATCTCAT
CTCTGCTGTTTTCATTGCTTTTTCTTTATATAATGCAAGATTTTGAAATT
GAGCCCTATACCAGCTTGAGCTTTTCACAAAACCTTCAACGGAATGGCCG
GTTTCAGTTGCCTCTGGACATACGAAAATTGGAAAAAATGACTCCTTCCG
AATACTTGTGTCAGTACAGTGTCGTTTTGCTGCGCAGGGAGGCCCTTTAT
CAGACTGTGTTCAAAAAGCATAAGACCAATGAGAATTTTATTCCTTTTCG
CAGATTCGAATTGGCCATTAATGATGTGTCCATTTGTGCAGTAGGTCACG
AAGATATTTCAATGTTGCTAGAAGTTTCACAAATCAAGGAGGGAACAGAT
TTCAGTGAATCTTTGTTTCGAGGAGTTTGCGCACTTGCTGATAGATTAAT
CTTTTCAAAATTTGTGCCCGAAGACGAAAAGATATTAGATCAAAAGGAAG
GAGTAGAAAAGGCTGACTTTCATTCCTTAAAATTTAAACTAAAGAACGTT
AACATTTCCTCCCAGCTAAAATCGCTTCTCGAAAAATTATAATAGAAAGG
AATAATTTTTATTTATGTAATTATTTCTTGGGGGGAGGTTTGAGTATTCT
GAGCG
back to top

protein sequence of SMED30004423-orf-1

>SMED30004423-orf-1 ID=SMED30004423-orf-1|Name=SMED30004423-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=170bp
MQDFEIEPYTSLSFSQNLQRNGRFQLPLDIRKLEKMTPSEYLCQYSVVLL
RREALYQTVFKKHKTNENFIPFRRFELAINDVSICAVGHEDISMLLEVSQ
IKEGTDFSESLFRGVCALADRLIFSKFVPEDEKILDQKEGVEKADFHSLK
FKLKNVNISSQLKSLLEKL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36696FAMILY NOT NAMEDcoord: 21..167