SMED30004411

Overview
NameSMED30004411
Smed IDSMED30004411
Length (bp)1814
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004411 (SMED30004411) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004411 (SMED30004411) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004411 (SMED30004411) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004411 (SMED30004411) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004411

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30004411SMESG000061558.1 Contig2676newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30004411SMESG000061558.1 Contig2676uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30004411SMESG000038328.1 SMESG000038167.1 Contig2676newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30004411SMESG000038328.1 SMESG000038167.1 Contig2676uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
nervous systemSMED30004411SMESG000061558.1 dd_Smed_v4_11002_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004411SMESG000061558.1 dd_Smed_v4_11002_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30004411SMESG000061558.1 dd_Smed_v4_11002_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30004411 vs. TrEMBL
Match: A0A504YQH4 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_04651 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.423e-12
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query: 1063 LIGIKSCPDWCSTVETECPYFTPID--GNGGEPAFLCDESHYHHNARYRL--NTNASCGADMPWNHCCYS 1260
            L+ ++ C  WC+ VET CPYF P D   NGGEPAFLCDE HYHH++RY++   ++  C A+     CCYS
Sbjct:  126 LVDVEPCVSWCTRVETLCPYFNPADPTANGGEPAFLCDEGHYHHSSRYQVIYRSDQLCEAE-----CCYS 190
[Close]
BLAST of SMED30004411 vs. TrEMBL
Match: A0A4E0S2X1 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_002828 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.062e-11
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query: 1063 LIGIKSCPDWCSTVETECPYFTPID--GNGGEPAFLCDESHYHHNARYRL--NTNASCGADMPWNHCCYS 1260
            L+ ++ C  WC+ VET CPYF P D   NGGEPAFLCDE HYHH++RY++   ++  C A+     CCYS
Sbjct:  463 LVDVEPCVSWCTRVETLCPYFNPADPTANGGEPAFLCDEGHYHHSSRYQVIYRSDQLCEAE-----CCYS 527
[Close]
BLAST of SMED30004411 vs. TrEMBL
Match: A0A095CEC9 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_09629 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.876e-10
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 1 
Query: 1072 IKSCPDWCSTVETECPYFTPID--GNGGEPAFLCDESHYHHNARYR-----LNTNASCGADMPWNHCCY--------STELLDETQSTSNYRFFSQFSPNSE--TNQKSCISEQKNCLYKLI 1386
            ++ C  WC+ VET CPY  P D   NGGEPAFLCDESHYHH++RY+     +NT   C ++     CC+        S  + D+ Q ++   F   +S + E   +  SC   +  CL++L+
Sbjct:  412 VQPCISWCTQVETVCPYLNPADPTSNGGEPAFLCDESHYHHSSRYQAVYWDVNT---CESE-----CCFGVSDSILLSVSIPDKKQYSTPTDFLLSYSSDVEESNDNDSCSHLRDRCLHRLL 525
[Close]
BLAST of SMED30004411 vs. TrEMBL
Match: A0A430QGL0 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0008880 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.939e-10
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 1 
Query: 1072 IKSCPDWCSTVETECPYFTPID--GNGGEPAFLCDESHYHHNARYR-----LNTNASCGADMPWNHCCY--------STELLDETQSTSNYRFFSQFSPNSE--TNQKSCISEQKNCLYKLI 1386
            ++ C  WC+ VET CPY  P D   NGGEPAFLCDESHYHH++RY+     +NT   C ++     CC+        S  + D+ Q ++   F   +S + E   +  SC   +  CL++L+
Sbjct:  412 VQPCISWCTQVETVCPYLNPADPTSNGGEPAFLCDESHYHHSSRYQAVYWDVNT---CESE-----CCFGVSDSILLSVSIPDKKQYSTPTDFLLSYSSDVEESNDNDSCSHLRDRCLHRLL 525
[Close]
BLAST of SMED30004411 vs. TrEMBL
Match: G4VFV3 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_160820 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.109e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query: 1063 LIGIKSCPDWCSTVETECPYFTPID--GNGGEPAFLCDESHYHHNARYR 1203
            L+ ++ C  WC+ VET CPY  P D   NGGEPAFLCDESHYHH++RY+
Sbjct:  447 LVIVQPCISWCTQVETVCPYLNPADPTSNGGEPAFLCDESHYHHSSRYQ 495
[Close]
BLAST of SMED30004411 vs. Planmine SMEST
Match: SMESG000061558.1 (SMESG000061558.1)

HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 495/496 (99.80%), Postives = 495/496 (99.80%), Query Frame = 1 
Query:   82 MTNFKSDHNGYQKIPINQLKLITCNXXXXXXXXXXXXXXXXPCNICFILLFIIQISSTGLMLISVGLSFKMISAEVQLVNQSSKYIKNLILNSGNISTTNQTNNIETNXXXXXXXXXXXXXXXXXXPTDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYIXXXXXXXXXXXXXXXXXXXXKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYRFFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVXXXXXXXXXXXXXXXXXXXXXHAVSISELXXXXXXXXXXXXXXXXXXXXXNFSIR 1569
            MTNFKSDHNGYQKIPINQLKLITCNYLYNSSSSISNFKKLFPCNICFILLFIIQISSTGLMLISVGLSFKMISAEVQLVNQSSKYIKNLILNSGNISTTNQTNNIETNRDFYRLFLRRSRRLSDDLPTDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYISLTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYR FSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNNNENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR
Sbjct:    1 MTNFKSDHNGYQKIPINQLKLITCNYLYNSSSSISNFKKLFPCNICFILLFIIQISSTGLMLISVGLSFKMISAEVQLVNQSSKYIKNLILNSGNISTTNQTNNIETNRDFYRLFLRRSRRLSDDLPTDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYISLTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYRIFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNNNENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR 496
[Close]
BLAST of SMED30004411 vs. Planmine SMEST
Match: SMESG000061558.1 (SMESG000061558.1)

HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 479/496 (96.57%), Postives = 479/496 (96.57%), Query Frame = 1 
Query:   82 MTNFKSDHNGYQKIPINQLKLITCNXXXXXXXXXXXXXXXXPCNICFILLFIIQISSTGLMLISVGLSFKMISAEVQLVNQSSKYIKNLILNSGNISTTNQTNNIETNXXXXXXXXXXXXXXXXXXPTDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYIXXXXXXXXXXXXXXXXXXXXKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYRFFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVXXXXXXXXXXXXXXXXXXXXXHAVSISELXXXXXXXXXXXXXXXXXXXXXNFSIR 1569
            MTNFKSDHNGYQKIPINQLKLITCNYLYNSSSSISNFKKLFPCNICFILLFIIQISST                EVQLVNQSSKYIKNLILNSGNISTTNQTNNIETNRDFYRLFLRRSRRLSDDLPTDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYISLTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYR FSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNNNENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR
Sbjct:    1 MTNFKSDHNGYQKIPINQLKLITCNYLYNSSSSISNFKKLFPCNICFILLFIIQISST----------------EVQLVNQSSKYIKNLILNSGNISTTNQTNNIETNRDFYRLFLRRSRRLSDDLPTDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYISLTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYRIFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNNNENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR 480
[Close]
BLAST of SMED30004411 vs. Planmine SMEST
Match: SMESG000061558.1 (SMESG000061558.1)

HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 321/322 (99.69%), Postives = 321/322 (99.69%), Query Frame = 1 
Query:  604 MLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYIXXXXXXXXXXXXXXXXXXXXKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYRFFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVXXXXXXXXXXXXXXXXXXXXXHAVSISELXXXXXXXXXXXXXXXXXXXXXNFSIR 1569
            MLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYISLTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYR FSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNNNENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR
Sbjct:    1 MLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYISLTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDETQSTSNYRIFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNNNENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR 322
[Close]
BLAST of SMED30004411 vs. Planmine SMEST
Match: SMESG000041479.1 (SMESG000041479.1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.849e-16
Identity = 68/267 (25.47%), Postives = 123/267 (46.07%), Query Frame = 1 
Query:  463 TDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKT-EVRYSSVIFCEDCEMAYKKWLCTNQFDIYIXXXXXXXXXXXXXXXXXXXXKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYS 1260
            T+FS   T    R IC   +    F  L+  +L +C +  +S VI++ + +  + +  SS+  F      L++     L+ ++N    K    +  +I  + +++  C +++  L+E D +  + +Q+F + +  +   + T E + +  +    C   YK WLC+  F  +  +    + S ++  E          Q   + +  C   C+ VET+CPYF P+  NGGEP FLCD +HYH  A   L  +  C   +   +CC S
Sbjct:   23 TNFSQFATDQIARQICDFPNKCATFHILNNFQLGFCHL-KLSDVIWTSVWNNVQNL-TSSIRYFHRCTNLLYE-----LQFIDNSLNGK-TILVSDLIMEYINSKSKCNSIIMGLIELDEQARQYLQQFQDIVTVHQSYHVTYEAKSTKEVQFRQCLKTYKNWLCSELFSKFALVDKNYTFSGNEDPEF--------RQIKYVKLPKCARKCAQVETDCPYFQPLIQNGGEPGFLCDSNHYHSGAMESLMKSEQC---ITTRYCCKS 270
[Close]
BLAST of SMED30004411 vs. Planmine SMEST
Match: SMESG000041479.1 (SMESG000041479.1)

HSP 1 Score: 79.337 bits (194), Expect = 1.103e-15
Identity = 68/267 (25.47%), Postives = 123/267 (46.07%), Query Frame = 1 
Query:  463 TDFSLVLTRDNIRSICGTNSLVNRFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHDIPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIERDVQRFVESLIKNNCSNKT-EVRYSSVIFCEDCEMAYKKWLCTNQFDIYIXXXXXXXXXXXXXXXXXXXXKNSKTQSALIGIKSCPDWCSTVETECPYFTPIDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYS 1260
            T+FS   T    R IC   +    F  L+  +L +C +  +S VI++ + +  + +  SS+  F      L++     L+ ++N    K    +  +I  + +++  C +++  L+E D +  + +Q+F + +  +   + T E + +  +    C   YK WLC+  F  +  +    + S ++  E          Q   + +  C   C+ VET+CPYF P+  NGGEP FLCD +HYH  A   L  +  C   +   +CC S
Sbjct:   82 TNFSQFATDQIARQICDFPNKCATFHILNNFQLGFCHL-KLSDVIWTSVWNNVQNL-TSSIRYFHRCTNLLYE-----LQFIDNSLNGK-TILVSDLIMEYINSKSKCNSIIMGLIELDEQARQYLQQFQDIVTVHQSYHVTYEAKSTKEVQFRQCLKTYKNWLCSELFSKFALVDKNYTFSGNEDPEFR--------QIKYVKLPKCARKCAQVETDCPYFQPLIQNGGEPGFLCDSNHYHSGAMESLMKSEQC---ITTRYCCKS 329
The following BLAST results are available for this feature:
BLAST of SMED30004411 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A504YQH49.423e-1251.43Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A4E0S2X13.062e-1151.43Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A095CEC92.876e-1036.89Uncharacterized protein OS=Schistosoma haematobium... [more]
A0A430QGL02.939e-1036.89Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
G4VFV36.109e-1061.22Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
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BLAST of SMED30004411 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004411 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000061558.10.000e+099.80SMESG000061558.1[more]
SMESG000061558.10.000e+096.57SMESG000061558.1[more]
SMESG000061558.10.000e+099.69SMESG000061558.1[more]
SMESG000041479.19.849e-1625.47SMESG000041479.1[more]
SMESG000041479.11.103e-1525.47SMESG000041479.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004411 ID=SMED30004411|Name=SMED30004411|organism=Schmidtea mediterranea sexual|type=transcript|length=1814bp
TCTATATAAATCTTATATGATTGTAAATGGTTTATGAATTAATATGATTA
TAAATTTAATTGAAAATCGTCTAAATGAGTTATGACCAATTTCAAATCTG
ACCATAATGGTTATCAAAAAATACCTATTAATCAATTGAAATTAATTACT
TGCAACTATCTCTATAACTCGTCATCAAGTATTTCTAACTTTAAAAAGCT
ATTTCCGTGCAATATTTGCTTTATTTTATTATTCATTATCCAGATAAGTT
CAACAGGTTTGATGCTAATCTCTGTTGGATTATCATTTAAAATGATCTCA
GCAGAAGTCCAGTTAGTCAATCAATCGTCGAAATATATTAAAAATTTAAT
TCTCAACTCAGGAAACATTAGCACTACTAACCAAACGAATAATATTGAAA
CTAATCGAGATTTTTATCGACTATTTTTACGCAGATCCCGACGCCTTTCA
GATGATTTACCAACGGATTTTTCGTTGGTTTTGACTAGAGATAATATCAG
ATCAATATGTGGGACGAATTCTCTTGTGAATAGATTCGAATATTTATCTC
GAGTCAAATTGAGATATTGTGATATTTTCCACGTGTCGTCTGTGATCTAT
TCAATGTTGGTGTCTGAATTTGAAACGGTTAACGTGTCGTCATTATTTCC
ATTCGATTATATTAATCCTTCACTCCATGATATTCCGACAATCATGTTAA
GGATGTTAGAAAATGGCTATATTGCCAAATTGAACAATTCTCTTCACAAA
ATTATTGATAATCATTTTTCTACTGAGGAGAATTGTGTAAATGTATTAAA
TAAGCTTTTGGAAGAAGACAATAGAATTGAAAGAGACGTCCAAAGATTTG
TGGAAAGTCTTATTAAAAATAACTGTTCAAATAAAACTGAAGTTCGGTAT
TCTTCGGTGATATTTTGTGAAGATTGTGAGATGGCATACAAGAAATGGCT
TTGTACTAATCAATTTGACATTTACATTTCCTTAACTCTTCCAAACTCAA
ACTCAAACTCAGATTCTTCTGAAAGTGCAAATTTGAATAAGAATTCAAAA
ACTCAGTCGGCCTTGATTGGAATTAAAAGCTGTCCAGATTGGTGCTCAAC
AGTGGAAACTGAGTGTCCATATTTTACTCCAATTGATGGTAACGGTGGAG
AACCCGCTTTTCTCTGTGATGAAAGCCATTATCATCATAACGCTCGGTAT
CGACTTAATACAAACGCTAGCTGTGGAGCCGATATGCCTTGGAACCATTG
CTGTTATTCTACGGAATTGCTAGATGAAACTCAAAGTACCAGTAATTATC
GTTTCTTTTCACAGTTCTCTCCAAATTCGGAAACCAATCAGAAATCGTGT
ATTTCTGAACAAAAGAACTGTCTCTATAAATTAATTCAATCATTTTATCT
TGTTAACAATTCCTTGGGCAATAATAACAATAATGAGAATTCGTTTCAAA
ATAATCCTAGTAACAGTCATGCAGTCTCAATATCTGAGTTGAGTAACAAT
CAACTACAAATAATGATTTCTATCAGTAGTAGTTTCTTTTTATACTTTTA
TATGAATTTTTCAATAAGATGATGATTGGGCAGACACAATGTTGTTTGGT
GCTGATGTTATTACACACTGTCCCGATACCACTGATAAATTAATTTTTTA
ATTATTTAATCAATTAATTTAATTACTAGACTAATACCTAAATAAATTGA
GTAAATCGACTGCTGCTTTCGGTGGTGGCAAGTCTTTATTTCTTGTTGTT
AGCTTTATAATTCAGAGTTTAGATTTATTTGTACAGCCTCATAATCATTA
TTATAATAATCGTG
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protein sequence of SMED30004411-orf-1

>SMED30004411-orf-1 ID=SMED30004411-orf-1|Name=SMED30004411-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=497bp
MTNFKSDHNGYQKIPINQLKLITCNYLYNSSSSISNFKKLFPCNICFILL
FIIQISSTGLMLISVGLSFKMISAEVQLVNQSSKYIKNLILNSGNISTTN
QTNNIETNRDFYRLFLRRSRRLSDDLPTDFSLVLTRDNIRSICGTNSLVN
RFEYLSRVKLRYCDIFHVSSVIYSMLVSEFETVNVSSLFPFDYINPSLHD
IPTIMLRMLENGYIAKLNNSLHKIIDNHFSTEENCVNVLNKLLEEDNRIE
RDVQRFVESLIKNNCSNKTEVRYSSVIFCEDCEMAYKKWLCTNQFDIYIS
LTLPNSNSNSDSSESANLNKNSKTQSALIGIKSCPDWCSTVETECPYFTP
IDGNGGEPAFLCDESHYHHNARYRLNTNASCGADMPWNHCCYSTELLDET
QSTSNYRFFSQFSPNSETNQKSCISEQKNCLYKLIQSFYLVNNSLGNNNN
NENSFQNNPSNSHAVSISELSNNQLQIMISISSSFFLYFYMNFSIR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15819TRANSMEMBRANE PROTEIN FAM155coord: 153..442
NoneNo IPR availableTMHMMTMhelixcoord: 45..67