Zinc finger MYM-type protein 1

Overview
NameZinc finger MYM-type protein 1
Smed IDSMED30004368
Length (bp)4874
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Zinc finger MYM-type protein 1 (SMED30004368) t-SNE clustered cells

Violin plots show distribution of expression levels for Zinc finger MYM-type protein 1 (SMED30004368) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Zinc finger MYM-type protein 1 (SMED30004368) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Zinc finger MYM-type protein 1 (SMED30004368) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004368

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30004368 SmedASXL_018473SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30004368 SmedASXL_018473SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30004368 dd_Smed_v4_11794_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004368 dd_Smed_v4_11794_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30004368 dd_Smed_v4_11794_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004368 dd_Smed_v4_11794_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004368 dd_Smed_v4_11794_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30004368 dd_Smed_v4_11794_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Zebrafish
Match: CR762475.1 (pep chromosome:GRCz11:4:55494751:55498830:1 gene:ENSDARG00000098243.2 transcript:ENSDART00000172605.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR762475.1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.003e-7
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKR-IHIQINESFLGFHVIHEILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S ++D T  +S  +Q+S V RY     D E  +R + +   ES  G  + + ++  ++D GL+L   RGQ YD AA MSG+Y G+QSRI
Sbjct:  406 SILLDETTDVSHKEQVSFVVRYVR---DMEVKERFLQVCTLESTTGKELENVVISLLQDNGLDLKNIRGQGYDGAANMSGMYKGLQSRI 491
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Xenopus
Match: ENSXETT00000043220.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:7:36411169:36451375:1 gene:ENSXETG00000018966.1 transcript:ENSXETT00000043220.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 65.4698 bits (158), Expect = 6.244e-10
Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 2 
Query: 4424 IIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNE 4618
            +I++ SL    P++ T + +FL+ PVT+A+ +RSFSK KLIKNYL S++ Q+ LS L+ILSI++E
Sbjct:  634 MIQDYSLADCYPNIDTAFRIFLTSPVTVASCKRSFSKLKLIKNYLRSSMEQERLSNLSILSIEHE 698
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A1L8HJG0 (Uncharacterized protein OS=Xenopus laevis OX=8355 GN=XELAEV_18013881mg PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.328e-60
Identity = 102/253 (40.32%), Postives = 151/253 (59.68%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTTKSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQTDTIDLMT-----------LRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQE 4389
            +IK+W +LS+FTT S++ LK LCPT  S R E + A+R+R+ DI+ AL  + L         E   L++KL++F+ +F++V+ + + + +N++SKMLQ++ +DL             LR   + +  AK+  + LA+ WG+   F   KRI K K+  DELC D RL DPE RF   I Y +LDI+I Q+  RF GM  V++ F +LHP  L    +D+LF  A KL+Q Y  D++P F  QL SFR  L+ E
Sbjct:  571 SIKRWAVLSTFTTDSSVTLKRLCPTRWSSRYESLFALRFRFTDIMKALSKLMLTSTKAKEKQEAKSLKKKLEAFEFIFIIVLQSKILDHINSISKMLQSEKMDLSKAAHLICNAKEDLRKYRSNFEDAKQNAILLAEKWGIATKFEN-KRIAKVKRHCDELCQDERLEDPETRFKTEIFYGSLDIIIAQLTSRFNGMTTVVERFRLLHPHVLAMEKDDELFAAATKLEQYYQEDVSPDFPRQLMSFRSTLRDE 822

HSP 2 Score: 98.5969 bits (244), Expect = 5.328e-60
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 2 
Query: 4388 KISTIKELSHFLIIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSI 4639
            K  T+K+L+  LII+N++L S+LPDV T +LLFL+LPVT+++ ERSFSK KLIK++L ST+ Q  LSGLAILSI+NE+   L I
Sbjct:  825 KCCTVKDLAQLLIIDNAALSSTLPDVCTVFLLFLTLPVTVSSAERSFSKLKLIKSFLRSTMSQQRLSGLAILSIENERARELDI 908

HSP 3 Score: 87.4261 bits (215), Expect = 2.083e-13
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKRIHIQINESFLGFHVIHE---------ILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ ISK+DQ+S+++RY TI  D E  +   I I+E+FLGF  + +         I+  I+ KGL L KCRGQ YD AA MSG+YSGVQ+RI
Sbjct:  428 SVIMDTTQDISKIDQLSQIYRYVTIGRD-ECQRATEIIIHEAFLGFQEVEDQSAAGLENSIINSIEMKGLTLSKCRGQGYDGAATMSGIYSGVQARI 523
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: H2ZWX0 (Uncharacterized protein OS=Latimeria chalumnae OX=7897 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.079e-42
Identity = 92/257 (35.80%), Postives = 134/257 (52.14%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTT----KSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQTDTIDLMT----LRNNS-------NEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQE 4389
            +IK W +LSSF +     SNI LK L PT  S + E ++A R+ Y+DI+ AL  I L+ K  D   E                 ++ T + E VN VSK+LQ+   DL      LR  +       N +  AK + ++L++ WG +  F   K + K K  FD+L +D RL D E  F +N+ YR LDI+  Q+ + F+ ++ V D F ++ P  L S +++ LF +A KL   +  DI+P F  QL SFR  LK E
Sbjct:  202 SIKCWAMLSSFASTLELSSNITLKRLFPTRRSSQYESLLAFRFWYLDIMKALTKIVLLSKNADEHCEA--------------STLLQTKILEVVNAVSKLLQSKDTDLYKATKLLRKATEDLAIFQNNFKEAKNSAITLSEKWGGQTKFEE-KCVRKVKCHFDKLREDERLADSESFFKVNVFYRCLDIINAQLTNCFQSLQAVADKFSVIQPNMLISASDEDLFKEAEKLANHFIKDISPAFPGQLLSFRSCLKSE 443

HSP 2 Score: 85.5001 bits (210), Expect = 2.079e-42
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = 2 
Query: 4388 KISTIKELSHFLIIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEK 4621
            K S++K+L++ LI++N++L SS  +V T  LLFL++PVT+ + ERSF+K KLIKNYL ST+ Q+ L GL +LSI NE+
Sbjct:  446 KQSSVKDLANMLIVDNNALASSFSEVCTVLLLFLTIPVTVPSAERSFTKLKLIKNYLRSTMGQERLHGLGMLSIGNER 523

HSP 3 Score: 88.1965 bits (217), Expect = 6.370e-14
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSE---TGKRIHIQINESFLGFHVI---------HEILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ ISK DQMS++FRY TIETD     TG         SFLGF  I          +I+ CI+ KGL + KCRGQ YD A+ +SGVYSGVQ+RI
Sbjct:   64 SVIMDTTQDISKADQMSQIFRYVTIETDERNVATG---------SFLGFREICDQSASELEKKIISCIEQKGLHISKCRGQGYDGASNISGVYSGVQARI 154
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A3B1J2K6 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.151e-41
Identity = 91/255 (35.69%), Postives = 136/255 (53.33%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTTKSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQTDTIDLM-----------TLRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENK 4395
            +IK+W +L +   KS   LK LCPT  + R + + A+R+RY DIL AL  I L  K  D   E + L + +++F+ V + V+   + E++N VS++LQ   +DL+           TL    ++++  K T   LA  WG+  NF   KR  + K+ FDEL +D RLT+PE  F +N+ Y  +D ++ Q+  RF GM  V   F  L P EL   +++ L   A  L   Y+ D++  F  QL SFR  L  E K
Sbjct:  267 SIKRWELLENHL-KSKPTLKRLCPTRWASRRDALYALRFRYADILQALTKITLRSKKSDERTEAMGLLKAMEAFEFVMMTVIQEKILETINIVSQVLQKKDVDLLQAASLLGNATCTLAQLRDQFDNLKCTAQGLASSWGIRCNFRH-KRTRRIKRHFDELTEDQRLTNPEEIFKVNVFYMCIDTVVSQVRTRFHGMDSVTRKFQFLCPTELLRASDEALNESAQTLAAIYNEDLSSEFSSQLLSFRNALGSEIK 519

HSP 2 Score: 85.8853 bits (211), Expect = 1.151e-41
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 2 
Query: 4385 KKISTIKELSHFLIIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSINEDRRNQRLTLHLQPSASSVYTFC*PVRVFIF----RMLNI 4750
            K +ST+K L   L++ +SS++SS+ DV T   LFL++PVT+A+ ERSFSK K+IKNYL ST+ QD LSGLA+LSI     + +S  E+ R           A+   TF  PV +F      +M N+
Sbjct:  519 KTVSTVKGLFELLLLRHSSILSSVTDVATALKLFLTIPVTVASAERSFSKLKMIKNYLRSTMSQDRLSGLAMLSI-----VCVSGKENERMDGWMDEYIKKATFYRTF--PVLIFFIYFTEKMFNM 637

HSP 3 Score: 94.3597 bits (233), Expect = 1.246e-15
Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKRIHIQINESFLGFHVIHE---------ILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ +SKVDQ+S+VFRY T+  D E    I + INESFLGF  I +         I + I+ KGL L KCRGQ YD A+ MSG+YSGVQ RI
Sbjct:  124 SVIMDTTQDLSKVDQLSQVFRYVTVRKD-EADNAIAVDINESFLGFQNISDQTAQGLETKITELIQSKGLPLHKCRGQGYDGASTMSGIYSGVQKRI 219
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: H3A162 (Uncharacterized protein OS=Latimeria chalumnae OX=7897 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.842e-41
Identity = 94/260 (36.15%), Postives = 144/260 (55.38%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTT----KSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQTD--------------TIDLMTLRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQE 4389
            +IK W +LSSF +     SN+ LK LCPT  S + E ++A+R+RY+DI+ AL  I L+ K  D   E   L++ +++   VFL++  T + E VN VSK+LQ+               T DL   +NN  E   AK + + L + WG +  F   KR+ K K+ FDELC+D RL + E  F +N+ YR L    +++ + F+ ++ V D F ++ P  L S +++ L+ +A KL   ++ DI+  F  QL SF   LK E
Sbjct:  347 SIKCWTMLSSFASTSELSSNLTLKRLCPTRWSSQYESLLALRFRYLDIMKALTKIVLLSKNADEHCEASALKKLMENLNFVFLVLQ-TKILEVVNAVSKLLQSKDTDLYKAAKLLCKVTEDLAMFQNNFKE---AKSSAIKLLEKWGGQTKFEE-KRVRKVKRHFDELCEDERLANSESFFKVNVFYRCL----NKLTNHFQSLQAVADKFSVIQPNMLISASDEDLYKEAEKLANHFNKDISLVFPGQLLSFSFCLKSE 597

HSP 2 Score: 80.8777 bits (198), Expect = 1.842e-41
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 2 
Query: 4388 KISTIKELSHFLIIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNE 4618
            K S +K+L++ LI++N+ L SS  DV T  LLFL++PVT+A+ ERSFSK KLIKNY  ST  Q+ L GL +LSI+N+
Sbjct:  600 KQSLVKDLANMLIVDNA-LASSFSDVCTVLLLFLTIPVTVASAERSFSKLKLIKNYPRSTTGQERLCGLGMLSIEND 675

HSP 3 Score: 95.5153 bits (236), Expect = 6.087e-16
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKRIHIQINESFLGFHVI---------HEILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ I K DQ++++F+Y TIETD E    I ++INESFLGF  I          +I+ CI+ KGL++ KCRGQ YD A+ MSG+YSGVQ+RI
Sbjct:  204 SIIVDTTQDILKTDQLNQIFQYVTIETD-ERNVAIGVKINESFLGFQEICDQSSSGLEKKIISCIEQKGLDISKCRGQGYDGASNMSGMYSGVQARI 299
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A3B3RTZ4 (Uncharacterized protein OS=Paramormyrops kingsleyae OX=1676925 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.494e-40
Identity = 102/258 (39.53%), Postives = 137/258 (53.10%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTT-----KSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQ---TDTIDLMTLRNNS--------NEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQE 4389
            +IK+W +L+   T       N+ LK LCPT  S R E + A+RYRY+D++ AL  I L    +D   E + L + ++ F  +FL+VV   + E+VN VSK LQ   TD    M L  NS        + ++ AK T   LA  WGV+  F  + R  + K+ FDEL +D RLT+ E  F + I   TLDI+I Q+  RF  MR     F  + P  L    +D+LF KA +L   YS DIAP F  QL SFR   K E
Sbjct:  276 SIKRWTMLTGIVTTDGSDHPNVTLKRLCPTRWSSRFESLSAIRYRYVDLMKALTKIALTSDKRDERNEAVGLMKSMEKFSFIFLVVVQAKVLETVNAVSKTLQKTDTDIQTAMQLLENSIQILSDYRSAFDQAKATAQMLASKWGVQTTFENV-RPRRVKRHFDELSEDERLTNAEKYFRVQIFNATLDIIISQLSQRFSCMRETCHVFEAIRPMTLQIAGDDELFEKAKRLSDHYSRDIAPTFPTQLLSFRSCFKAE 532

HSP 2 Score: 66.2402 bits (160), Expect = 4.494e-40
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 2 
Query: 4394 STIKELSHFLIIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSG 4591
            S+I +L+  L+++  ++ S+  +V T  +LFL+LPVT+AT ERSFSK KLIK YL S++ Q+ LSG
Sbjct:  537 SSILQLAKMLVVDYDTVTSTFGEVCTALMLFLTLPVTVATAERSFSKLKLIKTYLRSSMGQERLSG 602

HSP 3 Score: 74.7146 bits (182), Expect = 1.568e-9
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKRIHIQINESFLGFHVIHEILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ +SK DQ+S+V+RY TI  ++   K + I++ ESFLGF  +  +        L++ KCRGQ YD AA MSG+Y GVQ+RI
Sbjct:  144 SIIMDTTQDLSKHDQLSQVYRYVTIVRNA-MDKAVDIKVMESFLGF--METMNTSHYANSLDISKCRGQGYDGAANMSGIYLGVQARI 228
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000035789.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000101.1:2843018:2852765:1 gene:ENSAMXG00000037827.1 transcript:ENSAMXT00000035789.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 117.087 bits (292), Expect = 7.167e-45
Identity = 91/255 (35.69%), Postives = 136/255 (53.33%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTTKSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQTDTIDLM-----------TLRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENK 4395
            +IK+W +L +   KS   LK LCPT  + R + + A+R+RY DIL AL  I L  K  D   E + L + +++F+ V + V+   + E++N VS++LQ   +DL+           TL    ++++  K T   LA  WG+  NF   KR  + K+ FDEL +D RLT+PE  F +N+ Y  +D ++ Q+  RF GM  V   F  L P EL   +++ L   A  L   Y+ D++  F  QL SFR  L  E K
Sbjct:  267 SIKRWELLENHL-KSKPTLKRLCPTRWASRRDALYALRFRYADILQALTKITLRSKKSDERTEAMGLLKAMEAFEFVMMTVIQEKILETINIVSQVLQKKDVDLLQAASLLGNATCTLAQLRDQFDNLKCTAQGLASSWGIRCNFRH-KRTRRIKRHFDELTEDQRLTNPEEIFKVNVFYMCIDTVVSQVRTRFHGMDSVTRKFQFLCPTELLRASDEALNESAQTLAAIYNEDLSSEFSSQLLSFRNALGSEIK 519

HSP 2 Score: 85.8853 bits (211), Expect = 7.167e-45
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 2 
Query: 4385 KKISTIKELSHFLIIENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSINEDRRNQRLTLHLQPSASSVYTFC*PVRVFIF----RMLNI 4750
            K +ST+K L   L++ +SS++SS+ DV T   LFL++PVT+A+ ERSFSK K+IKNYL ST+ QD LSGLA+LSI     + +S  E+ R           A+   TF  PV +F      +M N+
Sbjct:  519 KTVSTVKGLFELLLLRHSSILSSVTDVATALKLFLTIPVTVASAERSFSKLKMIKNYLRSTMSQDRLSGLAMLSI-----VCVSGKENERMDGWMDEYIKKATFYRTF--PVLIFFIYFTEKMFNM 637

HSP 3 Score: 94.3597 bits (233), Expect = 4.718e-19
Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKRIHIQINESFLGFHVIHE---------ILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ +SKVDQ+S+VFRY T+  D E    I + INESFLGF  I +         I + I+ KGL L KCRGQ YD A+ MSG+YSGVQ RI
Sbjct:  124 SVIMDTTQDLSKVDQLSQVFRYVTVRKD-EADNAIAVDINESFLGFQNISDQTAQGLETKITELIQSKGLPLHKCRGQGYDGASTMSGIYSGVQKRI 219
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000042930.1 (pep primary_assembly:Astyanax_mexicanus-2.0:12:25471427:25473738:-1 gene:ENSAMXG00000037442.1 transcript:ENSAMXT00000042930.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 112.079 bits (279), Expect = 2.258e-39
Identity = 88/250 (35.20%), Postives = 133/250 (53.20%), Query Frame = 1 
Query: 3664 NIKQWNILSSFTTKSNIKLKALCPTG*SFREECIVAVRYRYXXXXXXXXXXXXXXXXXXXXXEVL*LQRXXXXXXXXXXXXXXTTMFESVNTVSKMLQTDTIDLM-----------TLRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVL 4380
            +IK+W +L +   KS   LK LCPT  + R + + A+R+RY DIL AL  I L  K  D   E + L + +++F+ V + V+   + E++N VS++LQ   +DL+           TL    ++++  K T   LA  WG+  NF   KR  + K+ FDEL +D  LT+PE  F +N+ Y  +D ++ Q+  RF GM  V   F  L P EL   +++ L   A  L   Y+ D++  F  QL SFR  L
Sbjct:  309 SIKRWELLENHL-KSKPTLKRLCPTRWASRRDALYALRFRYADILQALTKITLRSKKSDERTEAMGLLKAMEAFEFVMMTVIQEKILETINIVSQVLQKKDVDLLQAASLLGNATCTLAQLRDQFDNLKCTAQGLASSWGIRCNFRH-KRTRRIKRHFDELTEDQCLTNPEEIFKVNVFYMCIDTVVSQVRTRFHGMDSVTRKFQFLCPTELLRASDEALNESAQTLAAIYNEDLSSEFSSQLLSFRNAL 556

HSP 2 Score: 72.4034 bits (176), Expect = 2.258e-39
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 2 
Query: 4451 SLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSINE 4645
             + DV T   LFL++PVT+A+ ERSFSK K+IKNYL ST+ QD LSGLA+LSI++++   + + E
Sbjct:  557 GVTDVATALKLFLTIPVTVASAERSFSKLKMIKNYLRSTMSQDRLSGLAMLSIESQRSRRMDLTE 621

HSP 3 Score: 91.2781 bits (225), Expect = 4.171e-18
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKRIHIQINESFLGFHVIHE---------ILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D TQ +SKVDQ+S+VFRY T+  D E    I + INESFLGF  I +         I + I+  GL L KCRGQ YD A+ MSG+YSGVQ RI
Sbjct:  166 SVIMDTTQDLSKVDQLSQVFRYVTVRKD-EADNAIAVDINESFLGFQNISDQTAQGLETKITELIQSNGLLLHKCRGQGYDGASTMSGIYSGVQKRI 261
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000036272.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:11935414:11938921:1 gene:ENSAMXG00000041670.1 transcript:ENSAMXT00000036272.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.5438 bits (153), Expect = 1.852e-9
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2 
Query: 4427 IENSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSINE 4645
            + ++SL    P+++    + L+LPVT+A+ ERSFSK KLIK YL ST+ Q+ LSGLA++SI  E    LS+++
Sbjct:  734 LHDNSLQEVYPNLWIALRIALTLPVTVASAERSFSKLKLIKTYLRSTMGQERLSGLAVISINAEVAHSLSLDD 806
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000042715.1 (pep primary_assembly:Astyanax_mexicanus-2.0:16:11855083:11857132:-1 gene:ENSAMXG00000035113.1 transcript:ENSAMXT00000042715.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.6766 bits (117), Expect = 1.110e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 2 
Query: 4433 NSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSINED 4648
            N +L S+ P+VY    LFL++P+T    ERSFSK   IKN L   + Q+ L+ L++L+I  E  +V  +N D
Sbjct:  573 NLNLQSTFPNVYIALRLFLTVPITNCEGERSFSKLARIKNELRIRMRQNRLNSLSLLAI--ESDLVRQLNFD 642

HSP 2 Score: 31.5722 bits (70), Expect = 1.110e-8
Identity = 24/106 (22.64%), Postives = 52/106 (49.06%), Query Frame = 1 
Query: 4111 LCDDTRLTDPEMRFTINIVYR--TLDILIDQIV----HRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENKHNQRV 4410
            + DD+   +P + F     +R  T +++ID++V    HR      + + F +L   +  +++N +L  KA  L   Y +D+     D+L  ++  + ++ KH  ++
Sbjct:  466 MSDDS--AEPGVAFNGKDKFRIETFNVVIDKLVSCLNHRLNAYTHLTELFDVLFMPD--NMSNSELTLKANSLAAAYPSDLNMSLADELIQYKSFITEKEKHPSKM 567

HSP 3 Score: 56.225 bits (134), Expect = 2.575e-7
Identity = 29/89 (32.58%), Postives = 54/89 (60.67%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKR-IHIQINESFLGFHVIHEILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D T  ++ VDQ++ +FR+  +  D    +R +  +  E+  G  +   ++  +++ GL+L  CRGQ YD+A+ MSG Y+G+Q+ +
Sbjct:  220 SVIVDSTPDLAHVDQLTFIFRF--VNNDGHVVERFLAFEPIENHSGDSLAECVVAMVENLGLDLSNCRGQSYDNASNMSGKYNGIQAHL 306
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000035531.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000029.1:6285841:6288423:1 gene:ENSAMXG00000041958.1 transcript:ENSAMXT00000035531.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.9062 bits (115), Expect = 1.662e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 2 
Query: 4433 NSSLVSSLPDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQNEKKIVLSINED 4648
            N +L S+ P+VY    LFL++P+T    ERSFSK   IKN L   + Q+ L+ L++L+I  E  +V  +N D
Sbjct:  775 NLNLQSTFPNVYIALRLFLTVPITNCEGERSFSKLARIKNELRIRMRQNRLNSLSLLAI--ESDLVRQLNFD 844

HSP 2 Score: 31.187 bits (69), Expect = 1.662e-8
Identity = 24/106 (22.64%), Postives = 52/106 (49.06%), Query Frame = 1 
Query: 4111 LCDDTRLTDPEMRFTINIVYR--TLDILIDQIV----HRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENKHNQRV 4410
            + DD+   +P + F     +R  T +++ID++V    HR      + + F +L   +  +++N +L  KA  L   Y +D+     D+L  ++  + ++ KH  ++
Sbjct:  668 MSDDS--AEPGVAFNGKDKFRIETFNVVIDKLVSCLNHRLNAYTHLTELFDVLFMPD--NMSNSELILKANLLAAAYPSDLNMSLADELIQYKSFITEKEKHPSKM 769

HSP 3 Score: 56.9954 bits (136), Expect = 2.058e-7
Identity = 30/89 (33.71%), Postives = 54/89 (60.67%), Query Frame = 3 
Query: 3330 SFIIDITQYISKVDQMSEVFRYGTIETDSETGKR-IHIQINESFLGFHVIHEILKCIKDKGLELLKCRGQDYDDAAKMSGVYSGVQSRI 3593
            S I+D T  ++ VDQ + +FR+  +  D+   +R +  +  E+  G  +   ++  +++ GL+L  CRGQ YD+A+ MSG Y+GVQ+ +
Sbjct:  379 SVIVDSTPDLAHVDQPTFIFRF--VNNDAHVVERFLAFEPIENHSGDSLAECVVAMVENLGLDLSNCRGQSYDNASNMSGKYNGVQAHL 465
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Match: ENSORLT00000028133.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:111948955])

HSP 1 Score: 56.6102 bits (135), Expect = 2.073e-7
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2 
Query: 4457 PDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQN 4615
            P+ +T   + L+LPVT+A  ERSFSK KLIK+YL ST+ Q+ L+ LA++SI +
Sbjct:  774 PNFWTALRIALTLPVTVAQAERSFSKLKLIKSYLRSTMSQERLTNLAVVSINH 826
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Match: ENSORLT00000042294.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:110016639])

HSP 1 Score: 56.6102 bits (135), Expect = 2.073e-7
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2 
Query: 4457 PDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQN 4615
            P+ +T   + L+LPVT+A  ERSFSK KLIK+YL ST+ Q+ L+ LA++SI +
Sbjct:  774 PNFWTALRIALTLPVTVAQAERSFSKLKLIKSYLRSTMSQERLTNLAVVSINH 826
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Match: ENSORLT00000045044.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:111948193])

HSP 1 Score: 56.6102 bits (135), Expect = 2.073e-7
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 2 
Query: 4457 PDVYTTYLLFLSLPVTLATEERSFSKPKLIKNYLHSTILQDILSGLAILSIQN 4615
            P+ +T   + L+LPVT+A  ERSFSK KLIK+YL ST+ Q+ L+ LA++SI +
Sbjct:  774 PNFWTALRIALTLPVTVAQAERSFSKLKLIKSYLRSTMSQERLTNLAVVSINH 826
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000034315.1 (SMESG000034315.1)

HSP 1 Score: 301.212 bits (770), Expect = 2.586e-94
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 1 
Query: 3973 LMTLRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENKHNQRVE 4413
            +  LRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENKHNQRVE
Sbjct:    1 MSALRNNSNEYNIAKETTVSLAQLWGVEANFGIIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRGMRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSFRMVLKQENKHNQRVE 147
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000036641.1 (SMESG000036641.1)

HSP 1 Score: 166.392 bits (420), Expect = 3.220e-45
Identity = 88/134 (65.67%), Postives = 100/134 (74.63%), Query Frame = -2 
Query:  419 DMDTLQALSKELIKFRRENADLHAQVTQMSRGI*KIRVTWIEPSRAKLIYQRLTAAQHGCAEEKKMVQNQRTQIRSL*VPLSAFQ*GNAVTYPLVFAPAQITYRDYNHTVKPAIAKRPHPWPGKVERAKRRSQH 820
            DM +L+ LSK+L+  R+EN +LH Q+ QMSR I KIR TWIEP+RAK I QRLTAAQ G AEEK++VQNQRTQ RSL V L A Q GNAVTY LV APAQI YRD + T KP  AKRP   PGK ERAK R+Q 
Sbjct:  156 DMQSLRTLSKKLMNSRKENTELHNQLIQMSREIQKIRATWIEPARAKAINQRLTAAQRGWAEEKQLVQNQRTQNRSLEVALLACQEGNAVTYQLVIAPAQIAYRDASSTTKPVTAKRPQQRPGKTERAKHRAQQ 289

HSP 2 Score: 71.2478 bits (173), Expect = 2.364e-18
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = -3 
Query: 1183 LDEHQQQTEWQIIMASHRSNRINADIVVSGIPSTDGYSPSYGISYXXXXXXXXXXXAPINVVVPRRLI 1386
            L+ HQ+QT WQ+ MA    +++NADI    IPSTDGY+P  G+S+ELDD AL EM+ P+NV++PRRL+
Sbjct:   55 LEIHQKQTNWQVAMARQWLDKVNADIAAGKIPSTDGYAPECGVSFELDDPALMEMDTPMNVLIPRRLL 122

HSP 3 Score: 42.3578 bits (98), Expect = 2.364e-18
Identity = 22/34 (64.71%), Postives = 23/34 (67.65%), Query Frame = -1 
Query: 1452 IWDAGYSISPVRGPNR*PLSQNRNDEVELPYVAI 1553
            +WDAGYSISPVR           NDEVELPYVAI
Sbjct:    1 MWDAGYSISPVRESRE--SRHFNNDEVELPYVAI 32
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000013207.1 (SMESG000013207.1)

HSP 1 Score: 149.828 bits (377), Expect = 1.350e-41
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = -2 
Query:  419 MDTLQALSKELIKFRRENADLHAQVTQMSRGI*KIRVTWIEPSRAKLIYQRLTAAQHGCAEEKKMVQNQRTQIRSL*VPLSAFQ*GNAVTYPLVFAPAQITYRDYNHTVKPAIAKRPHPWPGKVERAKRRSQH 817
            M++L+ LS++L+K R+EN +LH+Q+ QMSR I KIR T  EP+R K  YQRLTAAQ G  EEK++ QNQ+TQIRSL V LSA Q  NA TYPLVFAP QI YRD   T K   + R    PGK ER KRR+Q 
Sbjct:    1 MESLRTLSRKLVKSRKENTELHSQLFQMSREIQKIRSTSGEPTRMKTTYQRLTAAQRGWTEEKQLAQNQKTQIRSLEVALSASQESNAGTYPLVFAPVQIAYRDAISTTKLVASLRSQRRPGKAERVKRRAQQ 133
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000020037.1 (SMESG000020037.1)

HSP 1 Score: 144.05 bits (362), Expect = 1.496e-39
Identity = 75/125 (60.00%), Postives = 94/125 (75.20%), Query Frame = -2 
Query:  425 SKELIKFRRENADLHAQVTQMSRGI*KIRVTWIEPSRAKLIYQRLTAAQHGCAEEKKMVQNQRTQIRSL*VPLSAFQ*GNAVTYPLVFAPAQITYRDYNHTVKPAIAKRPHP-WPGKVERAKRRS 796
            S+EL K RRENA+LH Q+ QM++ I +I+ TW+EP + K +YQ++TAAQ G AEEK++ Q Q+ QIRSL V LSA Q GNAVTYPLVFAPAQ+ YR+   T KPA   +P P  PGK ERAKRR+
Sbjct:    8 SRELEKSRRENAELHQQLIQMTKEIHQIKATWVEPGKVKSLYQKMTAAQRGWAEEKQLHQTQKVQIRSLEVALSACQEGNAVTYPLVFAPAQLAYREATETTKPAT--KPTPRRPGKAERAKRRA 130
[Close]
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000033890.1 (SMESG000033890.1)

HSP 1 Score: 138.658 bits (348), Expect = 1.571e-37
Identity = 74/145 (51.03%), Postives = 101/145 (69.66%), Query Frame = -2 
Query:  395 FIDMDTLQALSKELIKFRRENADLHAQVTQMSRGI*KIRVTWIEPSRAKLIYQRLTAAQHGCAEEKKMVQNQRTQIRSL*VPLSAFQ*GNAVTYPLVFAPAQITYRDYNHTVKPAIAKRP-HPWPGKVERAKRRSQHLRIILRIY 826
             +DM+ +  L+KEL K R++N  LH+Q+ Q+++ I +IR +WIEP+R K IYQRLTAAQ G  +EK++ Q+Q+ QI SL V LSA Q GNA+TY LVFAPAQ+ Y +     KP  AK+P    PGK ERAKRR+  ++   +IY
Sbjct:    5 ILDMNRIGTLTKELTKSRQQNEKLHSQLLQLNKEIQQIRASWIEPARPKRIYQRLTAAQRGWEDEKQLGQSQKIQILSLEVALSACQEGNAITYQLVFAPAQLAYMETTEATKP--AKKPAERRPGKAERAKRRAFQIKEYSKIY 147
The following BLAST results are available for this feature:
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CR762475.17.003e-739.33pep chromosome:GRCz11:4:55494751:55498830:1 gene:E... [more]
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSXETT00000043220.16.244e-1050.77pep primary_assembly:Xenopus_tropicalis_v9.1:7:364... [more]
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1L8HJG05.328e-6040.32Uncharacterized protein OS=Xenopus laevis OX=8355 ... [more]
H2ZWX02.079e-4235.80Uncharacterized protein OS=Latimeria chalumnae OX=... [more]
A0A3B1J2K61.151e-4135.69Uncharacterized protein OS=Astyanax mexicanus OX=7... [more]
H3A1621.842e-4136.15Uncharacterized protein OS=Latimeria chalumnae OX=... [more]
A0A3B3RTZ44.494e-4039.53Uncharacterized protein OS=Paramormyrops kingsleya... [more]
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000035789.17.167e-4535.69pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000042930.12.258e-3935.20pep primary_assembly:Astyanax_mexicanus-2.0:12:254... [more]
ENSAMXT00000036272.11.852e-946.58pep primary_assembly:Astyanax_mexicanus-2.0:20:119... [more]
ENSAMXT00000042715.11.110e-841.67pep primary_assembly:Astyanax_mexicanus-2.0:16:118... [more]
ENSAMXT00000035531.11.662e-841.67pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSORLT00000028133.12.073e-752.83zinc finger MYM-type protein 1-like [Source:NCBI g... [more]
ENSORLT00000042294.12.073e-752.83zinc finger MYM-type protein 1-like [Source:NCBI g... [more]
ENSORLT00000045044.12.073e-752.83zinc finger MYM-type protein 1-like [Source:NCBI g... [more]
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BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000034315.12.586e-9497.96SMESG000034315.1[more]
SMESG000036641.13.220e-4565.67SMESG000036641.1[more]
SMESG000013207.11.350e-4158.65SMESG000013207.1[more]
SMESG000020037.11.496e-3960.00SMESG000020037.1[more]
SMESG000033890.11.571e-3751.03SMESG000033890.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004368 ID=SMED30004368|Name=Zinc finger MYM-type protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=4874bp
CAATTTTCCATTTGAATTTTTATCACAATATAAATTTCTTTTTTATTATT
GTTGATATTCATTATTAGATGTTTCTGAAAATGTAATATTAGTAATAAAT
ATACAAAACTTTTATTTCAAAAAATCAAATAATTTCATAAAATTGTGGGG
TTAGTGGCTTATGGTCTTGACCCTCTTACATACAACCTTTCTAGTCCGCA
AAGGTGAGCCCTAACTCTAGAACTGCTAAGGCCCGGCCTCATGATGGGTT
CAACACGCTACCGATAGAAGGCCTATGCGCGGTTCATAATCTCGGTCCCT
TCTGTACGAGTTTAAACATTATACTAATTCTGTTCCGGGTTATTATTTCA
TTACGTGTTACAAGAAATTATTAATTCGACAATACCGTTTTTTAATAAAT
TCGTAAGATAATTCTAAGATGCTGTGAGCGTCGCTTTGCGCGCTCCACTT
TCCCCGGCCACGGATGAGGTCGTTTGGCTATTGCTGGTTTGACCGTGTGA
TTATAATCTCTATAAGTAATCTGTGCGGGAGCGAATACCAGCGGGTATGT
CACTGCGTTGCCTTACTGGAAAGCCGACAGTGGTACCTACAGGCTCCTGA
TTTGAGTCCGTTGATTTTGGACCATCTTTTTTTCTTCCGCACATCCGTGT
TGAGCGGCGGTTAATCGTTGGTAAATCAATTTGGCTCGTGACGGTTCGAT
CCACGTTACCCTGATTTTTTATATCCCCCGGCTCATCTGTGTTACCTGAG
CGTGTAAATCTGCGTTTTCTCGTCGGAATTTTATCAATTCTTTACTCAGC
GCTTGGAGAGTATCCATATCTATAAATTAATCCATCAATTAATGCCTTTC
AGTAAATAATAATTATTAAATAAAAGGTTCGTCCATATAATTGGACTAAG
ATGGACCTAATTTGAGTTTTTAAAATTATAGTTTTGTTGCCAGCCCCTTT
ACTTCGGCGCTTATTTTCTCGTGTGCTTAGCGTCTTAATCATCTTTATTT
TATTTAATTATTACAAATAACTATTAACTTTATTCAACACAAATTTTATT
GAAATTACATTTGTTTTTACTCATGGATGATCCTATCTCCACCGCCCATC
GTAATACCGGTAATTTGACTGATCCTTCGGCCTGTTCCTTATCTTGGTGC
AGTACTCAGATATGGTCTAGAGCTGTTGTCCGAATCAGGCGCCTTGGTAC
CACCACGTTGATAGGCGCCTCCATCTCTTCTAGAGCCTAGTCATCTAACT
CGTAAGAGATCCCGTAACTAGGCGAATAACCATCGGTACTCGGAATCCCG
CTTACGACGATGTCCGCATTGATTCTGTTTGAACGATGACTGGCCATAAT
TATCTGCCATTCCGTTTGTTGTTGGTGTTCATCCAATTTGGCCAACGCGA
ACTCAGCCCTCTCCCGAGCTTCTCGTGCAGGGTTTCGACCTGGTTCGCGC
TTATCGCGACATAAGGCAATTCGACTTCATCGTTGCGATTCTGAGAGAGG
GGTTATCTGTTTGGTCCTCTTACTGGGGATATCGAGTATCCGGCATCCCA
AATTGCTTAGCGACACCGTGCAGCTTTTCTGGTCGGAAATCGAATCGTCG
TTCCAGGACCAGTCCGCGAGTGTTGTGCTCCTGGCTAAATAATATTAGGG
ATAATTCAGTTGTTCATAATTGGTAGGAAGATCGCGAAAGTATTTAAGCG
ATTCCCTCCAGCTCGTTCCCCTTTTGGGCATTATAACCTACGTATAATCA
TCTCGTCGTGATTGACCATTTTCCCATCACTTTAGTGCTTAAGTTTCCTA
TATGTTCACCGCCAAAACTCCCTAGTAAGGCTGTTACTTCCCGTTACGTT
CAACTTGATGTGTCTCGATGCTTTACAGATTTTTGATTCTTCGATAGTTC
TTTAACATTGTAGTAATACGTAGTGTACCAAATTCCGTGGATCTTCCCTG
GTGCAGGGAGTCCGTCACTGGCAGGATTTTAAATAAATCATTTTAGCCAA
TATTTATATTTAATTTCTGATATATGATTTCACTTGGTGAATCGTAAATT
CAATTGATACTTCTTGTAGCACTTGGCTTTTCTCACAATGTATCGTCATT
TATCAGGGCTCCATGATTACATAGTCAGAATTCATATTTCTGTCTTTCCA
ACGGCATTCGAATAGACGTCCCTCATCAATAGTAACATTAAAACATGTCA
GGGGAAAATTTACATAATTACTTGAGTGATTATACTCCTCTGATGTTGTC
TTCCGCTTGATTCCTTGTCGCTCGTCGGAGCCGGTCCGTCCCCTGTGTCC
ACTGTTCGTTTTCGGGCTCATAAGTATCCCTTCGTTATTCGTTTTCTCTG
ATTAATTGTTCATTATGACGAGAAATGATCCGTCTCTCATCTGCTGGCTA
TTTATACGATTTCAGTCGAATGGTGCATGCAACTTGATATTTTGCAATTT
CAAATCGATGGAAATTTCTTCCAACTGATCAATAAATTGACCTTTTCTTT
TTTCCAAAAATTGTATGCTAAAATATTTATCCACATTCGCATGCGATTTG
TGATGATAATGCAAGATCAGTGAGTCCTTGATATACAGTACTTTTACTAG
TTATTGGAATTTTCTCTCAGTTTTATTAATAACTGTCAGATTGATTTTAA
GTAAATTATTAATTCGATAATTATTCGGTTATGTTTATCGAAATTTCTGT
AGCTTATTGGTCGGTTATGGGTCTCCACAAATTCCTATTTGGTCATCGCT
GGCGTAGTGGTAGTCGACAAAGCTCCTCTCTGCTTTGATCCGTCTTTCCT
GACATCCTCGTCGGGTCATTAATGATCGTCTAGTTATTAATCGTCATGAT
TTTTCTAATTATAACTGTATTTTGTTTGTGATTTAGTGTTTGTTTAATGC
GTTTAAATGGTGAATTGGTTGGCCACTGTTGGTTTCATTTTATTTGCTCT
TTTCCTAAGATGAAAGATCTTAAATACCTCGTGTAGTAATTGAATTAAAC
TGACTATTACTCGGGTTTATGGACAATCTATATATTCAGACTAGGAAGGT
ATTTCACTACTGCGTCATAGTTTACGATTTCGATTAAATGAACCCTTTAC
TGGTCCTAGCTATTGGGTTGTTCCTATTCCCATTTTGGTTACTCATTACA
AGGGCTACATATTTTCATCATTAATTTAAATTTATAATTCTTCCTATTCG
CCAAGTGGTGTTGATTTTTCACATTTATCCTCGTTTACCTTTTGCTTTTA
CCGAAATTAATTATTAAATATTCCTAAATATCATTGATTTATTTCTATTC
ATCTTTCCTCACGATTATTACACAATTCAAGTTTCATCATTGACATCACT
CAATATATTTCTAAAGTTGATCAAATGAGTGAAGTATTTCGTTATGGTAC
GATAGAGACTGACTCTGAAACTGGAAAACGAATCCACATTCAGATCAATG
AAAGTTTTCTAGGCTTCCATGTGATTCATGAAATTTTAAAGTGCATAAAA
GATAAAGGGTTGGAACTCTTGAAATGCAGGGGCCAAGATTATGACGATGC
TGCCAAAATGAGTGGTGTCTACTCTGGAGTCCAATCACGTATTTTGGAAT
AATTGCCAAACGCTTTATATAATCTGAACTTGGCTCTGAATGATGTAGTT
TCTCAATTACACGAACATCAAACAATGGAACATTCTGTCATCGTTTACAA
CTAAGTCCAATATCAAACTCAAGGCATTGTGCCCAACAGGATAGTCGTTC
CGTGAAGAGTGCATAGTAGCAGTACGCTATCGTTATATAGATATATTGAA
TGCTTTGATAAATATAAATCTGATTGAGAAAATAAAAGATATAATTGCTG
AAGTACTCTGACTTCAAAGGAAATTAAAATCGTTTAAATTGGTTTTTCTT
TTGGTTGTGCTCACAACAATGTTTGAAAGTGTGAATACTGTTTCAAAAAT
GCTCCAGACTGATACAATTGACTTAATGACATTAAGGAACAATTCAAATG
AATACAATATTGCCAAGGAAACGACAGTTTCTCTTGCTCAACTATGGGGT
GTAGAGGCCAATTTTGGAATAATTAAACGAATCCCAAAAGCAAAGAAGCA
GTTTGATGAACTATGCGATGATACCCGACTCACTGATCCAGAAATGCGAT
TCACAATAAACATAGTTTACCGCACTCTTGACATTCTCATCGATCAGATT
GTTCATCGGTTCAGGGGAATGCGGGTTGTGATAGATACATTTGGCATACT
GCACCCCCGTGAATTAACTTCTGTCACCAATGATCAACTATTCACAAAGG
CGATAAAGTTACAACAACAGTATTCAAATGACATAGCACCACCGTTCTTC
GATCAGCTACAAAGCTTTAGAATGGTTCTCAAACAAGAAAATAAGCACAA
TCAAAGAGTTGAGTCATTTTTTAATAATCGAAAATAGTTCTCTCGTTTCA
TCACTTCCAGATGTCTACACTACATATCTTCTCTTCCTCAGTTTACCAGT
AACTCTGGCAACAGAAGAGAGGTCGTTCTCCAAGCCTAAGCTCATCAAAA
ACTATTTGCATAGTACCATTCTGCAAGATATACTATCTGGATTAGCCATT
CTCAGTATTCAAAACGAAAAGAAAATAGTCCTATCCATTAATGAAGATCG
AAGAAACCAGCGATTGACCCTTCATTTACAGCCTTCAGCTTCTTCGGTTT
ACACATTTTGTTAGCCTGTTAGAGTTTTCATTTTCCGGATGCTAAATATA
ATAAATAATATTTTCAAAAAATTGTTTCTCTTATTTGTGTGCTTGAAATC
GATTCGAAATGTTTGTCGTGTCTGTGTGCGCATTAGTGTGTTTAATTCTG
GCATACTCAAATCGAATGTCTCTG
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protein sequence of SMED30004368-orf-1

>SMED30004368-orf-1 ID=SMED30004368-orf-1|Name=SMED30004368-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=173bp
MFESVNTVSKMLQTDTIDLMTLRNNSNEYNIAKETTVSLAQLWGVEANFG
IIKRIPKAKKQFDELCDDTRLTDPEMRFTINIVYRTLDILIDQIVHRFRG
MRVVIDTFGILHPRELTSVTNDQLFTKAIKLQQQYSNDIAPPFFDQLQSF
RMVLKQENKHNQRVESFFNNRK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity