Serine/arginine-rich splicing factor 12

Overview
NameSerine/arginine-rich splicing factor 12
Smed IDSMED30004367
Length (bp)794
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Serine/arginine-rich splicing factor 12 (SMED30004367) t-SNE clustered cells

Violin plots show distribution of expression levels for Serine/arginine-rich splicing factor 12 (SMED30004367) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Serine/arginine-rich splicing factor 12 (SMED30004367) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Serine/arginine-rich splicing factor 12 (SMED30004367) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004367

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30004367h1SMcG0021525 SmedASXL_068794SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30004367h1SMcG0021525 SmedASXL_068794SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30004367h1SMcG0021525 dd_Smed_v4_1695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30004367h1SMcG0021525 dd_Smed_v4_1695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30004367h1SMcG0021525 dd_Smed_v4_1695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30004367h1SMcG0021525 dd_Smed_v4_1695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004367h1SMcG0021525 dd_Smed_v4_1695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004367h1SMcG0021525 dd_Smed_v4_1695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713])

HSP 1 Score: 92.8189 bits (229), Expect = 1.398e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713])

HSP 1 Score: 92.8189 bits (229), Expect = 1.448e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713])

HSP 1 Score: 92.0485 bits (227), Expect = 1.715e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713])

HSP 1 Score: 92.4337 bits (228), Expect = 1.840e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713])

HSP 1 Score: 92.4337 bits (228), Expect = 1.924e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Celegans
Match: cpf-2 (Cleavage and Polyadenylation Factor [Source:UniProtKB/TrEMBL;Acc:O45577])

HSP 1 Score: 70.0922 bits (170), Expect = 1.168e-13
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 2 
Query:   80 RSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATG 325
            RS  +++VGNI  D+  D ++ IF + GN+++  +  D  +G PKG+ F++F DI+ AE +   L GY +  R LR++ A G
Sbjct:   15 RSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAG 96
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Celegans
Match: cpf-2 (Cleavage and Polyadenylation Factor [Source:UniProtKB/TrEMBL;Acc:O45577])

HSP 1 Score: 70.0922 bits (170), Expect = 1.168e-13
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 2 
Query:   80 RSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATG 325
            RS  +++VGNI  D+  D ++ IF + GN+++  +  D  +G PKG+ F++F DI+ AE +   L GY +  R LR++ A G
Sbjct:   15 RSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAG 96
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 62.7734 bits (151), Expect = 1.879e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 2 
Query:   74 MPRSTT---TIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEF 316
            MPR  +    +YVGN+P D+R  E++ IF +YG I      VD  SG    FAFV+FED RDAE++     GY    R +R+EF
Sbjct:    1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKY----VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 62.7734 bits (151), Expect = 1.879e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 2 
Query:   74 MPRSTT---TIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEF 316
            MPR  +    +YVGN+P D+R  E++ IF +YG I      VD  SG    FAFV+FED RDAE++     GY    R +R+EF
Sbjct:    1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKY----VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 62.7734 bits (151), Expect = 1.879e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 2 
Query:   74 MPRSTT---TIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEF 316
            MPR  +    +YVGN+P D+R  E++ IF +YG I      VD  SG    FAFV+FED RDAE++     GY    R +R+EF
Sbjct:    1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKY----VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Fly
Match: CstF64 (gene:FBgn0027841 transcript:FBtr0083660)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-13
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 2 
Query:   74 MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
            M +S  +++VGNIP +   ++LK IF   G +++  L  D  SG PKGF F +++D   A  +   L GY IG R+LR++ A  T+K+  EM+ + +
Sbjct:   11 MDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNAC-TEKSRMEMQQLLQ 106
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Fly
Match: CG10466 (gene:FBgn0032822 transcript:FBtr0332178)

HSP 1 Score: 55.4546 bits (132), Expect = 2.079e-9
Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 2 
Query:   71 NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTK--KTPEEMRTVTRR 367
            +M + +  I+V   P  L   +L  +F +YG +V   L  D  +G  KGF F+ +ED R    + D L G +I  R+LR++     K  K  E+M   T R
Sbjct:   28 DMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENEKMDEETLR 128
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Fly
Match: CG10466 (gene:FBgn0032822 transcript:FBtr0081291)

HSP 1 Score: 55.4546 bits (132), Expect = 2.079e-9
Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 2 
Query:   71 NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTK--KTPEEMRTVTRR 367
            +M + +  I+V   P  L   +L  +F +YG +V   L  D  +G  KGF F+ +ED R    + D L G +I  R+LR++     K  K  E+M   T R
Sbjct:   28 DMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENEKMDEETLR 128
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Fly
Match: x16 (gene:FBgn0028554 transcript:FBtr0079368)

HSP 1 Score: 56.225 bits (134), Expect = 4.536e-9
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 2 
Query:   83 STTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATG 325
            S   +YVG++  + R+++L+ +FG YG++ +  +  +     P GFAFV+FE  RDA ++   L G  +  R  R+E +TG
Sbjct:    6 SDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARN-----PPGFAFVEFESARDAADAVRGLDGRTVCGRRARVELSTG 81
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Fly
Match: x16 (gene:FBgn0028554 transcript:FBtr0332328)

HSP 1 Score: 56.225 bits (134), Expect = 4.677e-9
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 2 
Query:   83 STTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATG 325
            S   +YVG++  + R+++L+ +FG YG++ +  +  +     P GFAFV+FE  RDA ++   L G  +  R  R+E +TG
Sbjct:    6 SDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARN-----PPGFAFVEFESARDAADAVRGLDGRTVCGRRARVELSTG 81
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Zebrafish
Match: srsf10b (serine and arginine rich splicing factor 10b [Source:ZFIN;Acc:ZDB-GENE-040426-1415])

HSP 1 Score: 89.7373 bits (221), Expect = 5.602e-21
Identity = 39/93 (41.94%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
             ++++V NI ++ R ++L+R FGRYG IV   +P+D+YS  P+GFA++QFED+RDAE++   L    +  R + ++FA G +KTP +M+   R
Sbjct:    9 NSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNLDRKWVCGRQIEIQFAQGDRKTPGQMKNKER 101
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Zebrafish
Match: srsf10b (serine and arginine rich splicing factor 10b [Source:ZFIN;Acc:ZDB-GENE-040426-1415])

HSP 1 Score: 89.7373 bits (221), Expect = 5.602e-21
Identity = 39/93 (41.94%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
             ++++V NI ++ R ++L+R FGRYG IV   +P+D+YS  P+GFA++QFED+RDAE++   L    +  R + ++FA G +KTP +M+   R
Sbjct:    9 NSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNLDRKWVCGRQIEIQFAQGDRKTPGQMKNKER 101
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Zebrafish
Match: elavl2 (ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9])

HSP 1 Score: 63.1586 bits (152), Expect = 5.352e-11
Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = 2 
Query:   50 NFCNPPLNMPR----STTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            N C  P+ MP     S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + + +DAE++ + L G R+  +++++ +A
Sbjct:   22 NTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYA 115

HSP 2 Score: 50.8322 bits (120), Expect = 6.229e-7
Identity = 27/88 (30.68%), Postives = 45/88 (51.14%), Query Frame = 2 
Query:   68 LNMPRSTTT---IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFAT 322
            +N+P    T   I+V N+  D   + L ++FG +G +    +  D+ +   KGF FV   +  +A  +   L GYR+G R L++ F T
Sbjct:  267 INLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKT 354
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Zebrafish
Match: elavl2 (ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9])

HSP 1 Score: 63.1586 bits (152), Expect = 5.427e-11
Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = 2 
Query:   50 NFCNPPLNMPR----STTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            N C  P+ MP     S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + + +DAE++ + L G R+  +++++ +A
Sbjct:   51 NTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYA 144

HSP 2 Score: 50.8322 bits (120), Expect = 6.326e-7
Identity = 27/88 (30.68%), Postives = 45/88 (51.14%), Query Frame = 2 
Query:   68 LNMPRSTTT---IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFAT 322
            +N+P    T   I+V N+  D   + L ++FG +G +    +  D+ +   KGF FV   +  +A  +   L GYR+G R L++ F T
Sbjct:  296 INLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKT 383
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Zebrafish
Match: elavl2 (ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9])

HSP 1 Score: 63.1586 bits (152), Expect = 5.568e-11
Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = 2 
Query:   50 NFCNPPLNMPR----STTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            N C  P+ MP     S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + + +DAE++ + L G R+  +++++ +A
Sbjct:   51 NTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYA 144

HSP 2 Score: 50.8322 bits (120), Expect = 6.315e-7
Identity = 27/88 (30.68%), Postives = 45/88 (51.14%), Query Frame = 2 
Query:   68 LNMPRSTTT---IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFAT 322
            +N+P    T   I+V N+  D   + L ++FG +G +    +  D+ +   KGF FV   +  +A  +   L GYR+G R L++ F T
Sbjct:  295 INLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKT 382
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Xenopus
Match: srsf12 (serine/arginine-rich splicing factor 12 [Source:NCBI gene;Acc:493321])

HSP 1 Score: 87.8113 bits (216), Expect = 4.739e-20
Identity = 38/93 (40.86%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
             T+++V N+ +  R ++L+R FGRYG IV   +P+D+Y+  P+GFA++QFED+RDAE++   L    +  R + ++FA G +KTP +M++  R
Sbjct:    9 NTSLFVRNVADATRPEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Xenopus
Match: srsf12 (serine/arginine-rich splicing factor 12 [Source:NCBI gene;Acc:493321])

HSP 1 Score: 73.559 bits (179), Expect = 5.986e-15
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 2 
Query:   26 IYICLNKFNFCNPPLNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFE--DIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGRS 376
            I+ C  K+N            T+IY    PEDLRR+     FGRYG IV   +P+D+Y+  P+GFA++Q+   D+RDAE++   L    +  R + ++FA G +KTP +M++  R   S
Sbjct:    1 IFFCF-KYN-----------NTSIYR---PEDLRRE-----FGRYGPIVDVYVPLDFYTRRPRGFAYIQYPLFDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHACS 99
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Xenopus
Match: trerf1 (transcriptional regulating factor 1 [Source:Xenbase;Acc:XB-GENE-940630])

HSP 1 Score: 65.0846 bits (157), Expect = 1.500e-11
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 2 
Query:   35 CLNKFNFCNPPL---NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            C N  N C+ P+   N   S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + D +DAE++ + L G R+  +++++ +A
Sbjct:   35 CPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 132

HSP 2 Score: 51.9878 bits (123), Expect = 3.615e-7
Identity = 20/64 (31.25%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYR 286
            +YV  +P+ + + EL+++F +YG I+ + + VD  +G+ +G  F++F+   +AEE+   L G +
Sbjct:  144 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 207
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Xenopus
Match: trerf1 (transcriptional regulating factor 1 [Source:Xenbase;Acc:XB-GENE-940630])

HSP 1 Score: 65.0846 bits (157), Expect = 1.525e-11
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 2 
Query:   35 CLNKFNFCNPPL---NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            C N  N C+ P+   N   S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + D +DAE++ + L G R+  +++++ +A
Sbjct:   46 CPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143

HSP 2 Score: 51.9878 bits (123), Expect = 4.084e-7
Identity = 20/64 (31.25%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYR 286
            +YV  +P+ + + EL+++F +YG I+ + + VD  +G+ +G  F++F+   +AEE+   L G +
Sbjct:  155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Xenopus
Match: trerf1 (transcriptional regulating factor 1 [Source:Xenbase;Acc:XB-GENE-940630])

HSP 1 Score: 60.4622 bits (145), Expect = 6.320e-10
Identity = 31/99 (31.31%), Postives = 56/99 (56.57%), Query Frame = 2 
Query:   35 CLNKFNFCNPPL---NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYS-GIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            C N  N C+ P+   N   S T + V  +P+++ ++ELK +FG  G I +  L  D  + G   G+ FV + D +DAE++ + L G R+  +++++ +A
Sbjct:   46 CPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITVGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144

HSP 2 Score: 51.6026 bits (122), Expect = 4.551e-7
Identity = 20/64 (31.25%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYR 286
            +YV  +P+ + + EL+++F +YG I+ + + VD  +G+ +G  F++F+   +AEE+   L G +
Sbjct:  156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 219
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805])

HSP 1 Score: 92.4337 bits (228), Expect = 1.263e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805])

HSP 1 Score: 92.4337 bits (228), Expect = 1.321e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805])

HSP 1 Score: 92.8189 bits (229), Expect = 5.001e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805])

HSP 1 Score: 92.8189 bits (229), Expect = 5.333e-22
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Mouse
Match: Srsf12 (serine/arginine-rich splicing factor 12 [Source:MGI Symbol;Acc:MGI:2661424])

HSP 1 Score: 90.1225 bits (222), Expect = 5.319e-21
Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
             T+++V N+ +  R ++L+R FGRYG IV   +P+D+YS  P+GFA+VQFED+RDAE++   L    +  R + ++FA G +KTP +M++  R
Sbjct:    9 NTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. UniProt/SwissProt
Match: sp|Q9R0U0|SRS10_MOUSE (Serine/arginine-rich splicing factor 10 OS=Mus musculus OX=10090 GN=Srsf10 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.498e-21
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. UniProt/SwissProt
Match: sp|O75494|SRS10_HUMAN (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.498e-21
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRT 355
             T+++V N+ +D R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    I  R + ++FA G +KTP +M+ 
Sbjct:    9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKA 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. UniProt/SwissProt
Match: sp|Q8WXF0|SRS12_HUMAN (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.545e-19
Identity = 38/93 (40.86%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
             T++++ N+ +  R ++L+R FGRYG IV   +P+D+Y+  P+GFA+VQFED+RDAE++   L    +  R + ++FA G +KTP +M++  R
Sbjct:    9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. UniProt/SwissProt
Match: sp|Q9LHP2|SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.255e-16
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 2 
Query:   89 TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGRS 376
            T++ V N+  D R+++L+R F ++G +    LP DYY+G P+GF F+QF D  DA E+  ++ GY +  R L + FA   +K P EMRT  R GRS
Sbjct:   37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRS 132
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. UniProt/SwissProt
Match: sp|Q8L3X8|SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.952e-13
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTR 364
            + V NIP D R +EL+  F R+G +    +P DYYSG P+GFAFV+F D  DA E+   +       R + +  A+ ++K PEEMR  TR
Sbjct:   49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTR 138
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. TrEMBL
Match: A4V6L6 (TLS-associated protein (Fragment) OS=Dugesia japonica OX=6161 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.103e-65
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:   74 MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGRSMSPDK 391
            MPRS+TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTP+EMRTVTRRGRS SPDK
Sbjct:    1 MPRSSTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPDEMRTVTRRGRSNSPDK 106
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. TrEMBL
Match: A0A2L2XZ04 (Serine/arginine-rich splicing factor 12 OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.682e-25
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGRSMSPDK 391
             ++++V N+P+  R +EL+R+FG+YG I    +P+DYY+  P+GFA+VQFEDIRDAEE+ + L   R   R L +EFA G +KTP+EMR   RRG   SP +
Sbjct:    9 NSSLFVRNVPDSARPEELRRLFGKYGPITDVYIPLDYYNRRPRGFAYVQFEDIRDAEEALNELDRMRFYGRELEIEFAQGDRKTPQEMRGKERRGSRRSPHR 110
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. TrEMBL
Match: A0A087TSX4 (Serine/arginine-rich splicing factor 12 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_07906 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.520e-24
Identity = 49/96 (51.04%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGR 373
             ++++V N+P+  R +EL+R+FG+YG I    +P+DYYS  P+GFA+VQFEDIRDAEE+ + L   R   R L +EFA G +KTP+EMR   R+GR
Sbjct:    9 NSSLFVRNVPDSARPEELRRLFGKYGPITDVYIPLDYYSRRPRGFAYVQFEDIRDAEEALNELDRIRFFGRELEIEFAQGDRKTPQEMRGKERKGR 104
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. TrEMBL
Match: A0A2P6KLC3 (Serine/arginine-rich splicing factor 12 OS=Nephila clavipes OX=2585209 GN=NCL1_36182 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.514e-24
Identity = 48/96 (50.00%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGR 373
             ++++V N+P+  R +EL+R+FG+YG I    +P+DYY+  P+GFA+VQFEDIRDAEE+ + L   R   R L +EFA G +KTP+EMR   R+GR
Sbjct:    9 NSSLFVRNVPDSARPEELRRLFGKYGPITDVYIPLDYYNRRPRGFAYVQFEDIRDAEEALNELDRIRFFGRELEIEFAQGDRKTPQEMRGKERKGR 104
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. TrEMBL
Match: A0A0X3NKY1 (Serine/arginine-rich splicing factor 12 (Fragment) OS=Schistocephalus solidus OX=70667 GN=SRS12 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.042e-23
Identity = 57/126 (45.24%), Postives = 77/126 (61.11%), Query Frame = 2 
Query:    5 LLFCLH--LIYICLNKFNFCNPPLNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGRS 376
            +L  LH  L++ C   F  C     MPR  +++Y+ NIP+  R ++L+R FGR+G IV  T+P DYYSG  KGFAFV+FED RDAE++   +   R   R + +EF  G +KTP EMR   RR  S
Sbjct:   22 VLIDLHCALVFHC---FLGCFRCWIMPRRGSSLYIRNIPDSCRHEDLRRTFGRFGPIVDVTIPTDYYSGRMKGFAFVEFEDPRDAEDAHRNMDHSRFLGRRIEVEFTRGVRKTPAEMRDRDRRNDS 144
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Cavefish
Match: srsf10b (serine/arginine-rich splicing factor 10-like [Source:NCBI gene;Acc:103044580])

HSP 1 Score: 90.8929 bits (224), Expect = 3.184e-21
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGRS 376
             +++++ NI +D R ++L+R FGRYG I    +P+DY+S  P+GFA+VQFED+RDAE++   L    +  R + ++FA G +KTP +M+   R   S
Sbjct:    9 NSSLFIRNISDDSRPEDLRREFGRYGPITDVYIPLDYHSRRPRGFAYVQFEDVRDAEDAMHSLDRKWVCGRQIEIQFAQGDRKTPGQMKAKERHSPS 105
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410])

HSP 1 Score: 58.9214 bits (141), Expect = 3.316e-10
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:   89 TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRR 367
            T +YVGN+     + EL+R FG YG +    +  +     P GFAFV+FED RDAE++   L G  I    +R+E +TG  +     R  TRR
Sbjct:   11 TKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPRRSRYDRPPTRR 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410])

HSP 1 Score: 59.3066 bits (142), Expect = 3.544e-10
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:   89 TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRR 367
            T +YVGN+     + EL+R FG YG +    +  +     P GFAFV+FED RDAE++   L G  I    +R+E +TG  +     R  TRR
Sbjct:   11 TKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPRRSRYDRPPTRR 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410])

HSP 1 Score: 59.3066 bits (142), Expect = 4.178e-10
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:   89 TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRR 367
            T +YVGN+     + EL+R FG YG +    +  +     P GFAFV+FED RDAE++   L G  I    +R+E +TG  +     R  TRR
Sbjct:   11 TKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPRRSRYDRPPTRR 98
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Cavefish
Match: srsf2a (serine/arginine-rich splicing factor 2-like [Source:NCBI gene;Acc:103027270])

HSP 1 Score: 58.9214 bits (141), Expect = 4.397e-10
Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:   47 FNFCNPPLNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
             ++  PP ++    T++ V N+      + L+R+F +YG +    +P D Y+   +GFAFV+F D RDAE++ D + G  +  R LR++ A
Sbjct:    1 MSYGRPPPDV-EGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALLDGRELRVQMA 90
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006373.1 (pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-1 gene:ENSPMAG00000005755.1 transcript:ENSPMAT00000006373.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.299 bits (129), Expect = 5.160e-9
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 2 
Query:   59 NPPLNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKK 334
            N PL+       +YVGN+       +L+++F  YG + +  +  +     P GFAFVQFED RDA +S   L G  +    +R+E +TG ++
Sbjct:   10 NGPLDC-----KVYVGNLGSGATEYDLEKVFSYYGPLRSVWVARN-----PPGFAFVQFEDARDARDSCRELDGRLVCGSRVRVEMSTGERR 91
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 53.1434 bits (126), Expect = 5.937e-9
Identity = 30/96 (31.25%), Postives = 51/96 (53.12%), Query Frame = 2 
Query:   59 NPPLNMPRST---TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKT 337
            +PP+ M  +      +YVGN+  +  + EL+R F  YG + +      + +  P GFAFV+FED RDA ++   L G  +    +R+E ++G  + 
Sbjct:    2 SPPIAMSANCPLDCKVYVGNLGNNGNKAELERSFSYYGPLRSV-----WVARAPPGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHSSGRSRN 92
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Sea Lamprey
Match: tra2b (transformer 2 beta homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1094])

HSP 1 Score: 53.5286 bits (127), Expect = 1.180e-8
Identity = 22/62 (35.48%), Postives = 42/62 (67.74%), Query Frame = 2 
Query:  134 ELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            +L+ +FGRYG +    +  D  SG P+GFAFV  +++ D++E+ +R+ G  +  R++R++F+
Sbjct:  121 DLREVFGRYGPVADVNVVYDQQSGRPRGFAFVYMQNMEDSKEAKERVNGMELDGRNIRVDFS 182
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Sea Lamprey
Match: srsf2b (serine and arginine rich splicing factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2420])

HSP 1 Score: 51.6026 bits (122), Expect = 2.592e-8
Identity = 27/84 (32.14%), Postives = 46/84 (54.76%), Query Frame = 2 
Query:   68 LNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
                R +  + V N+      + L+R F +YG++    +P D ++   +GFAFV+F D RDAE++ D + G  +  R LR++ A
Sbjct:    1 CQFSRPSRALQVDNLTYRTSPEMLRRSFEKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDAMDAMDGKMLDGRELRVQVA 84
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000820.1 (pep scaffold:Pmarinus_7.0:GL483865:282:6617:-1 gene:ENSPMAG00000000738.1 transcript:ENSPMAT00000000820.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 3.517e-8
Identity = 26/88 (29.55%), Postives = 45/88 (51.14%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTV 358
            +YVG + E++    L   F  +G+IV   +P+DY +   +GF FV+FE   D+  + D +    +  R++R+  A   +     MR V
Sbjct:    9 LYVGGLAEEVDEKVLHAAFIPFGDIVDIQMPLDYETEKHRGFGFVEFEAAEDSAAAIDNMNESELFGRTIRVNLAKPMRLKEGSMRPV 96
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391])

HSP 1 Score: 65.0846 bits (157), Expect = 1.220e-12
Identity = 27/79 (34.18%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFAT 322
            + T+++GN+  +  RD +  +F ++G +V+  +P    +  PKGF +VQF ++ DA+++ D LQG  I  R +RL+F++
Sbjct:  266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Yeast
Match: IST3 (Component of the U2 snRNP; required for the first catalytic step of splicing and for spliceosomal assembly; interacts with Rds3p and is required for Mer1p-activated splicing; diploid mutants have a specific defect in MATa1 pre-mRNA splicing which leads to haploid gene expression in diploids [Source:SGD;Acc:S000001444])

HSP 1 Score: 54.6842 bits (130), Expect = 6.110e-10
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:   71 NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLE 313
            N  +    IY+GN+  +L   ++  +F  YG  V   L  D  +G  +GFA++++ED R    + D L G++IG R+L+++
Sbjct:   25 NEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKID 105
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Yeast
Match: RNA15 (Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping and maintenance of genome stability [Source:SGD;Acc:S000003012])

HSP 1 Score: 51.6026 bits (122), Expect = 2.976e-8
Identity = 23/90 (25.56%), Postives = 48/90 (53.33%), Query Frame = 2 
Query:   59 NPPLNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGT 328
            NPP      +  +Y+G+IP D   +++  +    G ++   +  D  +G  KG+AF++F D+  +  +   L GY++G R L+  +++ +
Sbjct:   14 NPP------SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 97
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Yeast
Match: NAM8 (RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function [Source:SGD;Acc:S000001128])

HSP 1 Score: 47.7506 bits (112), Expect = 7.424e-7
Identity = 26/85 (30.59%), Postives = 42/85 (49.41%), Query Frame = 2 
Query:   83 STTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKT 337
            + TT+++G +   +  DEL+  F  +G IV   +PV       K   FVQ+ D   AE +   +QG+ I    +RL +    K+T
Sbjct:  311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVG------KCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQT 389
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Yeast
Match: GBP2 (Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; also binds single-stranded telomeric repeat sequence in vitro; relocalizes to the cytosol in response to hypoxia; GBP2 has a paralog, HRB1, that arose from the whole genome duplication [Source:SGD;Acc:S000000517])

HSP 1 Score: 45.0542 bits (105), Expect = 5.552e-6
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATL-PVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            IY  N+P    R +L  +FG  G I  A L P +  +G P G A V++E++ DA+    +L  Y  G  SL++ +A
Sbjct:  351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQE--NGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISYA 424
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Nematostella
Match: EDO49282 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RH27])

HSP 1 Score: 73.9442 bits (180), Expect = 4.113e-17
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFA--FVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKT 337
             ++IYV N+  D R D+L+R+FG+YG I    +P+DYY+  P+GF   ++ FEDIRDAE++   L    +  R L ++FA G +K+
Sbjct:    9 NSSIYVRNLHPDTRPDDLRRMFGKYGRITDVYIPLDYYTREPRGFCYIYITFEDIRDAEDALYYLDRAMLLGRELEVQFAEGDRKS 94
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Nematostella
Match: EDO30175 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I7])

HSP 1 Score: 60.077 bits (144), Expect = 6.574e-12
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATG 325
            TT +YVGN+  +    EL+R F ++G +    +  +     P GFAFV++ED RDAEE+   L G  +  R++R+EF+  
Sbjct:    2 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARN-----PPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSNN 76
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Nematostella
Match: EDO44646 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI6])

HSP 1 Score: 61.6178 bits (148), Expect = 2.083e-11
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 2 
Query:   74 MPRSTTT---IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTP 340
            M RS +    +YVGN+P+D+R  +L  IF +YG+I    L     +G P  FAFV+FED RDAE++     G+      +R+EF  G    P
Sbjct:    1 MNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP--FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGPP 90
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Nematostella
Match: EDO30178 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I6])

HSP 1 Score: 52.373 bits (124), Expect = 6.114e-9
Identity = 28/78 (35.90%), Postives = 44/78 (56.41%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            TT ++VGN+ ++  R EL   F  YG +        + +  P GFAFV+F D RDA ++ D L G RI  + +++E +
Sbjct:    3 TTKVWVGNLGKEGDRHELWEAFKSYGELRDV-----WVARNPPGFAFVEFYDARDARDAVDALDGERICGQRVKVELS 75
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 55.0694 bits (131), Expect = 6.883e-9
Identity = 22/77 (28.57%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:   89 TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            T + +  +P  + ++++K+IFG  GN+ +  L  D  +G   G+AFV +++  DA ++   + G R+  ++L++ FA
Sbjct:   10 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 86
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Medaka
Match: srsf10b (serine and arginine rich splicing factor 10 [Source:NCBI gene;Acc:101171844])

HSP 1 Score: 93.2041 bits (230), Expect = 2.605e-22
Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRR 367
             T+++V NI ++ R ++L+R FGRYG IV   +P+D+Y+  P+GFA++QFED+RDAE++   L    +  R + ++FA G +KTP +M+T  RR
Sbjct:    9 NTSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQFEDVRDAEDALHSLDRKWVCGRQIEIQFAQGDRKTPNQMKTKERR 102
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Medaka
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:101165347])

HSP 1 Score: 60.077 bits (144), Expect = 4.225e-10
Identity = 28/93 (30.11%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:   50 NFCNPPL---NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            N C+ P+   ++  S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + D +DAE++ + L G R+  +++++ +A
Sbjct:   52 NNCSSPVESGSIEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 144

HSP 2 Score: 48.9062 bits (115), Expect = 2.119e-6
Identity = 19/60 (31.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRL 274
            +YV  +P+ + + EL+++F +YG I+ + + VD  +G+ +G  F++F+   +AEE+   L
Sbjct:  156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Medaka
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:101165347])

HSP 1 Score: 60.077 bits (144), Expect = 4.612e-10
Identity = 28/93 (30.11%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:   50 NFCNPPL---NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            N C+ P+   ++  S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + D +DAE++ + L G R+  +++++ +A
Sbjct:   23 NNCSSPVESGSIEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 115

HSP 2 Score: 48.9062 bits (115), Expect = 2.057e-6
Identity = 27/88 (30.68%), Postives = 44/88 (50.00%), Query Frame = 2 
Query:   68 LNMPRSTTT---IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFAT 322
            +N+P    T   I+V N+  D     L ++FG +G +    +  D+ +   KGF FV   +  +A  +   L GYR+G R L++ F T
Sbjct:  256 INIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKT 343

HSP 3 Score: 48.521 bits (114), Expect = 3.073e-6
Identity = 19/60 (31.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRL 274
            +YV  +P+ + + EL+++F +YG I+ + + VD  +G+ +G  F++F+   +AEE+   L
Sbjct:  127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 186
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Medaka
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:101165347])

HSP 1 Score: 60.077 bits (144), Expect = 4.968e-10
Identity = 28/93 (30.11%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:   50 NFCNPPL---NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            N C+ P+   ++  S T + V  +P+++ ++ELK +FG  G I +  L  D  +G   G+ FV + D +DAE++ + L G R+  +++++ +A
Sbjct:   52 NNCSSPVESGSIEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 144

HSP 2 Score: 48.9062 bits (115), Expect = 2.189e-6
Identity = 27/88 (30.68%), Postives = 44/88 (50.00%), Query Frame = 2 
Query:   68 LNMPRSTTT---IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFAT 322
            +N+P    T   I+V N+  D     L ++FG +G +    +  D+ +   KGF FV   +  +A  +   L GYR+G R L++ F T
Sbjct:  296 INIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKT 383

HSP 3 Score: 48.521 bits (114), Expect = 3.037e-6
Identity = 19/60 (31.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:   95 IYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRL 274
            +YV  +P+ + + EL+++F +YG I+ + + VD  +G+ +G  F++F+   +AEE+   L
Sbjct:  156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Medaka
Match: cstf2 (cleavage stimulation factor subunit 2 [Source:NCBI gene;Acc:101163985])

HSP 1 Score: 59.6918 bits (143), Expect = 7.263e-10
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:   74 MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTV 358
            M RS  +++VGNIP +   ++LK IF   G +V+  L  D  +G PKG+ F +++D   A  +   L G     R+LR++ A  ++K  EE++++
Sbjct:   24 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA-SEKNKEELKSL 117
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Planmine SMEST
Match: SMESG000078309.1 (SMESG000078309.1)

HSP 1 Score: 179.104 bits (453), Expect = 1.660e-57
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 2 
Query:   74 MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKT 337
            MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKK+
Sbjct:    1 MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKS 88
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Planmine SMEST
Match: SMESG000016033.1 (SMESG000016033.1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.499e-22
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 2 
Query:   80 RSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMR 352
            R  + ++V N+ + +R ++L+++FG+YG I    +P+DYYSG  KGF F  FED RDAE++  RL G ++  R + +EF  G KKTP EMR
Sbjct:    4 RKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFCTFEDFRDAEDAKTRLDGAQLLGREIGVEFTNGYKKTPAEMR 94
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Planmine SMEST
Match: SMESG000075205.1 (SMESG000075205.1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.906e-9
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 2 
Query:   86 TTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFA 319
            +T +YVGN+P D+R +E++ +F +YG I      VD  +     FAFV++E  RDAE++      YR    +L++E +
Sbjct:    6 STKVYVGNLPSDIRANEVESVFKKYGRI----KDVDVKNRAESSFAFVEYESSRDAEDAIHGRNNYRYEGHTLKVEMS 79
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Planmine SMEST
Match: SMESG000006493.1 (SMESG000006493.1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.740e-9
Identity = 30/102 (29.41%), Postives = 53/102 (51.96%), Query Frame = 2 
Query:   68 LNMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGR 373
            ++  +    +YVG++P+D    E+++ F  +G I +      + +  P GFAFV F+D RDAE++   L G  I    +R+E + G +  P+     +R  R
Sbjct:    1 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSV-----WVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHG-RSRPKPWANQSRNSR 96
[Close]
BLAST of Serine/arginine-rich splicing factor 12 vs. Planmine SMEST
Match: SMESG000050981.1 (SMESG000050981.1)

HSP 1 Score: 54.299 bits (129), Expect = 1.522e-8
Identity = 26/90 (28.89%), Postives = 46/90 (51.11%), Query Frame = 2 
Query:   71 NMPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTP 340
            N+ + +  I+VG +  +    ++  +F +YG IV   +  D Y+G  KGF F+ +ED R    + D   G ++G R L+++     K  P
Sbjct:   28 NIFKGSCWIFVGGLKFEYSEGDIICVFSQYGEIVNINMARDRYTGKSKGFCFICYEDQRSTTLAVDNFNGIKLGGRVLKVDHVEDYKLPP 117
The following BLAST results are available for this feature:
BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SRSF101.398e-2244.44serine and arginine rich splicing factor 10 [Sourc... [more]
SRSF101.448e-2244.44serine and arginine rich splicing factor 10 [Sourc... [more]
SRSF101.715e-2244.44serine and arginine rich splicing factor 10 [Sourc... [more]
SRSF101.840e-2244.44serine and arginine rich splicing factor 10 [Sourc... [more]
SRSF101.924e-2244.44serine and arginine rich splicing factor 10 [Sourc... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpf-21.168e-1337.80Cleavage and Polyadenylation Factor [Source:UniPr... [more]
cpf-21.168e-1337.80Cleavage and Polyadenylation Factor [Source:UniPr... [more]
rsp-31.879e-1144.05Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-31.879e-1144.05Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-31.879e-1144.05Probable splicing factor, arginine/serine-rich 3 ... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CstF643.989e-1337.11gene:FBgn0027841 transcript:FBtr0083660[more]
CG104662.079e-932.67gene:FBgn0032822 transcript:FBtr0332178[more]
CG104662.079e-932.67gene:FBgn0032822 transcript:FBtr0081291[more]
x164.536e-934.57gene:FBgn0028554 transcript:FBtr0079368[more]
x164.677e-934.57gene:FBgn0028554 transcript:FBtr0332328[more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf10b5.602e-2141.94serine and arginine rich splicing factor 10b [Sour... [more]
srsf10b5.602e-2141.94serine and arginine rich splicing factor 10b [Sour... [more]
elavl25.352e-1130.85ELAV like neuron-specific RNA binding protein 2 [S... [more]
elavl25.427e-1130.85ELAV like neuron-specific RNA binding protein 2 [S... [more]
elavl25.568e-1130.85ELAV like neuron-specific RNA binding protein 2 [S... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf124.739e-2040.86serine/arginine-rich splicing factor 12 [Source:NC... [more]
srsf125.986e-1536.97serine/arginine-rich splicing factor 12 [Source:NC... [more]
trerf11.500e-1131.63transcriptional regulating factor 1 [Source:Xenbas... [more]
trerf11.525e-1131.63transcriptional regulating factor 1 [Source:Xenbas... [more]
trerf16.320e-1031.31transcriptional regulating factor 1 [Source:Xenbas... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Srsf101.263e-2244.44serine/arginine-rich splicing factor 10 [Source:MG... [more]
Srsf101.321e-2244.44serine/arginine-rich splicing factor 10 [Source:MG... [more]
Srsf105.001e-2244.44serine/arginine-rich splicing factor 10 [Source:MG... [more]
Srsf105.333e-2244.44serine/arginine-rich splicing factor 10 [Source:MG... [more]
Srsf125.319e-2143.01serine/arginine-rich splicing factor 12 [Source:MG... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9R0U0|SRS10_MOUSE3.498e-2144.44Serine/arginine-rich splicing factor 10 OS=Mus mus... [more]
sp|O75494|SRS10_HUMAN3.498e-2144.44Serine/arginine-rich splicing factor 10 OS=Homo sa... [more]
sp|Q8WXF0|SRS12_HUMAN2.545e-1940.86Serine/arginine-rich splicing factor 12 OS=Homo sa... [more]
sp|Q9LHP2|SL30A_ARATH2.255e-1642.71Serine/arginine-rich SC35-like splicing factor SCL... [more]
sp|Q8L3X8|SRC30_ARATH3.952e-1342.22Serine/arginine-rich SC35-like splicing factor SCL... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A4V6L61.103e-6597.17TLS-associated protein (Fragment) OS=Dugesia japon... [more]
A0A2L2XZ043.682e-2549.02Serine/arginine-rich splicing factor 12 OS=Paraste... [more]
A0A087TSX41.520e-2451.04Serine/arginine-rich splicing factor 12 (Fragment)... [more]
A0A2P6KLC38.514e-2450.00Serine/arginine-rich splicing factor 12 OS=Nephila... [more]
A0A0X3NKY11.042e-2345.24Serine/arginine-rich splicing factor 12 (Fragment)... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf10b3.184e-2141.24serine/arginine-rich splicing factor 10-like [Sour... [more]
srsf7b3.316e-1038.71serine and arginine rich splicing factor 7 [Source... [more]
srsf7b3.544e-1038.71serine and arginine rich splicing factor 7 [Source... [more]
srsf7b4.178e-1038.71serine and arginine rich splicing factor 7 [Source... [more]
srsf2a4.397e-1032.97serine/arginine-rich splicing factor 2-like [Sourc... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000006373.15.160e-933.70pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-... [more]
srsf3a5.937e-931.25serine and arginine rich splicing factor 3a [Sourc... [more]
tra2b1.180e-835.48transformer 2 beta homolog [Source:ZFIN;Acc:ZDB-GE... [more]
srsf2b2.592e-832.14serine and arginine rich splicing factor 2b [Sourc... [more]
ENSPMAT00000000820.13.517e-829.55pep scaffold:Pmarinus_7.0:GL483865:282:6617:-1 gen... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
NSR11.220e-1234.18Nucleolar protein that binds nuclear localization ... [more]
IST36.110e-1032.10Component of the U2 snRNP; required for the first ... [more]
RNA152.976e-825.56Component of the cleavage and polyadenylation fact... [more]
NAM87.424e-730.59RNA binding protein, component of the U1 snRNP pro... [more]
GBP25.552e-635.53Poly(A+) RNA-binding protein; key surveillance fac... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO492824.113e-1741.86Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301756.574e-1237.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO446462.083e-1139.13Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301786.114e-935.90Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO348796.883e-928.57Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf10b2.605e-2243.62serine and arginine rich splicing factor 10 [Sourc... [more]
ELAVL24.225e-1030.11ELAV like RNA binding protein 2 [Source:NCBI gene;... [more]
ELAVL24.612e-1030.11ELAV like RNA binding protein 2 [Source:NCBI gene;... [more]
ELAVL24.968e-1030.11ELAV like RNA binding protein 2 [Source:NCBI gene;... [more]
cstf27.263e-1033.68cleavage stimulation factor subunit 2 [Source:NCBI... [more]
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BLAST of Serine/arginine-rich splicing factor 12 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000078309.11.660e-5798.86SMESG000078309.1[more]
SMESG000016033.17.499e-2245.05SMESG000016033.1[more]
SMESG000075205.11.906e-935.90SMESG000075205.1[more]
SMESG000006493.14.740e-929.41SMESG000006493.1[more]
SMESG000050981.11.522e-828.89SMESG000050981.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004367 ID=SMED30004367|Name=Serine/arginine-rich splicing factor 12|organism=Schmidtea mediterranea sexual|type=transcript|length=794bp
TTAGTTATTATTTTGTTTACATTTAATTTACATTTGTTTAAATAAGTTCA
ATTTTTGTAATCCTCCATTAAATATGCCGAGAAGTACTACAACAATTTAT
GTTGGGAATATTCCTGAAGATTTAAGGCGGGATGAATTAAAACGTATATT
TGGACGATATGGAAACATCGTTGCTGCTACATTACCAGTTGATTACTACA
GTGGAATTCCAAAAGGATTTGCATTTGTTCAATTCGAAGATATTAGAGAT
GCTGAAGAGTCTTTCGATAGATTGCAAGGATACCGTATCGGAAAGCGTTC
CTTAAGACTAGAGTTTGCTACGGGCACTAAAAAAACTCCTGAGGAAATGC
GCACTGTTACTAGACGTGGTAGGTCAATGTCTCCTGACAAGCGCAGATCT
AGGTCAGGGGCTGATAGACGGCGATCGCGGTCTAGAGATTACAAACGTCG
TTCTAGATCCGGAGATTATAGGCGCAGATCACGATCAGGCGACTATAGAC
GTAGAACACGTTCACCTATTCCTCGAAGACGAACACCAGAAAAAAGATCA
AGATCTAATCCCAGAAGAAGATCTAGGTCAATTGATGTAAGAAGGTCACG
CTCCTTTAGACGACCCTCCGGAAGTCCTGTTATATCTAGGAGAAATCGGT
CAAGAAGTCTCAGTGGATCTAGATCATAAATGTGAAATATAAATTTGTTT
TTAATTATAAATGTCTATTGATATGATATACACAAGTTTTAATAATACAT
GTTTTTATCAATTCTTTTTAAAAAGACAGTTATATATTTTTGTG
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protein sequence of SMED30004367-orf-1

>SMED30004367-orf-1 ID=SMED30004367-orf-1|Name=SMED30004367-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=202bp
MPRSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFA
FVQFEDIRDAEESFDRLQGYRIGKRSLRLEFATGTKKTPEEMRTVTRRGR
SMSPDKRRSRSGADRRRSRSRDYKRRSRSGDYRRRSRSGDYRRRTRSPIP
RRRTPEKRSRSNPRRRSRSIDVRRSRSFRRPSGSPVISRRNRSRSLSGSR
S*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0000381regulation of alternative mRNA splicing, via spliceosome
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR034477SRSF12
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..80
e-value: 9.0E-22
score: 88.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..78
e-value: 1.1E-18
score: 66.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..84
score: 19.263
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..102
e-value: 1.8E-24
score: 88.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..145
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 5..195
IPR034477Serine/arginine-rich splicing factor 12PANTHERPTHR23147:SF3SERINE/ARGININE-RICH SPLICING FACTOR 12coord: 5..195
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 2..112