Triadin-like isoform X4
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004318 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15
Homology
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: V3YYL0 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_236810 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.368e-13 Identity = 74/222 (33.33%), Postives = 119/222 (53.60%), Query Frame = 1
Query: 4264 FRRIKSNIE-TLKSHIENRKQKP--KEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVT-RMTAMDLCEPWESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSDLG-----YIEPIKEPSKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNIDK 4902
FR+ + IE LK + ++ QKP K+H PFIFNDL+PY DT+ +++ + P+ + R TA+ L +PW++ EMDK +LP V +R K+ + D+ A K + L +E +K YS+ LR + + + +IE+DY KTK D YR+ L+++N + + + FAYLQN+PGS++A+ E + +IDK
Sbjct: 50 FRKELTRIEEGLKKEV-SKIQKPLQKKHTPFIFNDLKPYYDTSS-QRYLIETPEELQHCYSSRTTAIGLIDPWKNLEMDKSVLP---VLEPKAVNRGETQKKKEKKIDERAKKTKHEGSTRLPKYPVVTLETSDLATKKLYYSDVPMLREELKQKYSANATKKIEEDYEKTKQDFYRMDLDKLNEVHPVNREHMRSTY-FAYLQNTPGSKKAINECVKSIDK 265
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A1S3J3E8 (uncharacterized protein LOC106169858 OS=Lingula unguis OX=7574 GN=LOC106169858 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.497e-8 Identity = 66/229 (28.82%), Postives = 103/229 (44.98%), Query Frame = 1
Query: 4249 YNDLEFRRIKSNIETLKSHIENRKQKP---KEHVPFIFNDLQPYGDTNMYEKFRHQKPKS----ASGAVTRMTAMDLCEPWESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSDLGYIEPIKEPSKS-----FIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNID 4899
Y E RR++ N++ K I KP KEH PFIFN L PY T+ + P+ + TR TA+ LC+PW + MD+ P + K+ DK K S R L ++ +K +YS+ TLR + + R+ ++YN+TK D +R+ L+++ + FAYLQN+PG+++A+ E I +D
Sbjct: 31 YFKEELRRLQKNLKEEKEKI-----KPPPIKEHSPFIFNTLGPYCGTSAA-SYLINGPEDTKLVSRSYATRATAIGLCDPWTALAMDQKPSPRVEPPEIKSLDELSASRKKE---DKDRPKKEGSTR--LPKFPAVEVDAKDMRDRKLLYSDVATLRQEIKDKYTTSAQKRVNEEYNRTKQDFFRMELDKMEEIHPNSRPIMRSAY-FAYLQNTPGAKKAVKECIKEMD 247
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A2T7PFQ4 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_07688 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.445e-7 Identity = 53/197 (26.90%), Postives = 85/197 (43.15%), Query Frame = 1
Query: 4330 KEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPWESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSD--------LGYIEPIKEPSKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNI 4896
K++ PFIFN L PY DT+ + + G +R TA LC+PW MDK +LP I + + + + KN + D + +E ++ YS+ LR + ++ ++E DY +T+ D Y S+ + S AYLQN+PGSRRA+ E + ++
Sbjct: 108 KKNTPFIFNSLAPYYDTHTPRFLINLRDGHFMGHTSRRTAQGLCDPWVDLCMDKDVLPAISPQHTTIHEHKKSSKHHGHK--QHEHKNKQERKEDDERMPLFPIVTLETKDLATRQLYYSDVPMLRKELKTKYSSQAQQKVEADYKRTRQDFY-RLDLDKIDQVPPGSRQHMTSTYLAYLQNTPGSRRAVNECVRSL 301
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A210PQT0 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT23691 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.206e-6 Identity = 62/238 (26.05%), Postives = 109/238 (45.80%), Query Frame = 1
Query: 4261 EFRRIKSNIETLKSHIENRKQKPKEHVPFIFNDLQPYGDTNM--------YEKFRHQKPKSAS----------GAVTRMTAMDLCEPWESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSDLGYIEPIKEPSKSFIYSE----RKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNIDKEQ 4908
E RR++ + +I +K + KEHVPF++ L+PY +T + E+ + Q+P S G TR TA+ LC+PW MD+ ILP ++ P+ K+ + A + + + + ++ F Y+E R L+ + SN + +++ DY +TK D Y ++ +R FAYLQN+PGSR+A+ + + +D ++
Sbjct: 691 ELRRLRVRLGKDAENI--KKPQFKEHVPFVWTSLEPYYNTYVPNYLINLPDEELQPQRPVSRGRPSQGDDFHQGYTTRSTAIGLCDPWIDLRMDQSILP--KLEQPKQGKDKPKAQKKKKDASQKAGSTRLPKFPVVDFNAKKENATRKFPYNEVAKFRTELKGRFSSNAQ----KKVDMDYQRTKDDFY-RMDLHRLDEVHPLNRPHMRKTYFAYLQNTPGSRKAVKDCVKTLDTDE 919
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: K1RVT4 (Halomucin OS=Crassostrea gigas OX=29159 GN=CGI_10016565 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 6.557e-6 Identity = 67/249 (26.91%), Postives = 114/249 (45.78%), Query Frame = 1
Query: 4258 LEFRRIKSNIETLKSHIENRKQKPKEHVPFIFNDLQPYGDTN----MYEKFRHQKPKSAS---------------GAVTRMTAMDLCEPWESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSDLGYIE----PIKE-------PSKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNIDKEQ*Q 4914
E R++ +++ S I K K +EH PF++ L+PY +T + + ++P S + G V+R TA+ LC+PW MD+ +LP + S K A+ ++A K G P+ E +K F YSE R + + ++ DY++TK D YR+ L+R++ I + ++ FAYLQN+PGS++A+ E + +++ EQ Q
Sbjct: 481 AELTRLQRSLKDESSKIS--KPKHREHYPFVWTSLEPYYNTYVARFLIDASETERPVSRARPISRGKLYAEDPQPGYVSRNTAIGLCDPWTDLRMDRELLPRLETPSK----------KSRAKGQQNAKKGKKEKPPKQGSTRLPKFPVVEFSSGKENATKCFPYSEVPKFRQEVMGRYKHDAPKKVNADYSRTKDDFYRMDLDRLDEVHPINRRHMRKAY-FAYLQNTPGSKKAIKECVKDLNGEQEQ 716
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Match: SMESG000025109.1 (SMESG000025109.1) HSP 1 Score: 2726.43 bits (7066), Expect = 0.000e+0 Identity = 1559/1585 (98.36%), Postives = 1562/1585 (98.55%), Query Frame = 1
Query: 154 MESGFSNNKETLRNTLPASPFTDGHTFNNLNLSNENEIKFNEEDEIKQKNTNIRDLNTEIVQQYSCNSAELFHADISIIPSTFEKHPSVTECYQLNXXXXXXXXXXXXQKVNYLDENIEMRKENQTVLSEIIKKSEDETIAEITNCAINNAATDQQPIETCDNIYEAMNENITTEISNIRSEAATYTNKCNNGSNRNIIQTSSLYEMLRQSTKTHLIAGASLIDDHKEDENFQMTSKEDSKKEVNVTISEVKKENYPXXXXXXXXXXXXXXXXXLNIKPHHTISVPQKRTSIDISVLATNPXXXXXXXXXXXXXXXPNNIYSKISKPPLVKYNSTFILTNSKSNSNLPVDKRHSAGEIMNRIKPQLSGTSKENLESEFIRFGSQEILNKTRYGRDNEPNATVDIIFIEKSQLAETNEFSEIIDLKSDQENNEDTYLNPEIINIDKDNLEIETGKTTEMESEISPSLDQSVELSELMKNETEFDKISDITEKEFSEISEMAPKQDLEEDVIIQANHIQEGTQKEEILHADQTEIIDKSDAIENDSELETLTTFEENDAKKVNTKSYQELENNDFKEANNDIKGSELIIQRCLEIEEHDDSNIDTNSHDKIEIENNDSNQQXXXXXXXXXXXXXXXXKLSSEIVNPKSEFEVYAEQKYVCVEDDSLFVGKQEINISLIVVKSLLSEMISKIFDTVSDSPHQSLHIINAIINELVDGIKINLEIDPFNKNDQVGDRFTAVSFIVDIIYEVIDKICCVKDLSHQEHDENQEINESQTSHTSLPNKLNLYEDENPIDTLQNETVAESKQPLQELDTSLPVELNLSPKIEGKKMRINQRPTKKEIKIEKDNSKKLSTAKETTGKFKPNFDRKRSTTKVLNKSQRRLSFDLENRRRKESISRKLSDMTLDKLNRDFSEVKSDTISDPENNEDLDLTTEKVPGEIFVKVNNNENEFSEDHIDESEKNVTIENKSTEATEDQTVVNNDVEALEQXXXXXXXXXXXXAAESDDIHIPNESQIQLSDETNKANPEEKELKKPVTKPSNDEDIITVIKRRLSLNQPPTVVNETDTKPRSISTTTKPRPLKRYASLVELSLKRTNKNLTKSNEECKNTDDIKEECQIEKNFSXXXXXXXXXXXXXXXXXXXXXXXXXXKSFDAPLDKGENFINQNEIKVTTVLKEECNENEMNEDRKSKMSSVHTVTIEVRDETSEMIGESDVLITEENKPWIIDNWDCNPNMNNDDXXXXXXXXXXXXXQKPLLPIIVNDIKFELRKKIKTTNYKPAPVENYFTKPADRRDSKPEKPDSKAKVEVKHENFKKNTKENPIEPLEKKTENSFTKLNRTKLKEPILVKAPQKKFNTDETQKIDKSVLYSKYNDLEFRRIKSNIETLKSHIENRKQKPKEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPWESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSDLGYIEPIKEPSKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNIDKEQ 4908
MESGFSNNKETLRNTLPASPFTDGHTFNNLNLSNENEIKFNEEDEIKQKNTNIRDLNTEIVQQYSCNSAELFHADISIIPSTFEKHPSVTECYQLNDIKEESDEDIESQKVNYLDENIEMRKENQTVL+EIIKKSEDETIAEITNCAINNAATDQQPIETCDNIYEAMNENITTEISNIRSEAATYTNKCNNGSNRNIIQTSSLYEMLRQSTKTHLIAGASLIDDHKEDENFQMTSKEDSKKEVNVTISEVKKENYPKVVKNKISSSRSKSFGSLNIKPHHTISVPQKRTSIDISVLATNPLLKSTSKTNIKKISLPNNIYSKISKPPLVKYNST ILTNSKSNSNLPVDKRHSAGEIMNRIKPQLSGTSKENLESEFIRFGSQEILNKTRYGRDNEPNATVDIIFIEKSQLAETNEFSE IDLKSDQENNEDTYLNPEIINIDKDNLEIETGKTTEMESEISPSLDQSVELSELMKNETEFDKISDITEKEFSEISEMAPKQDLEEDVIIQANHIQEGTQKEEILHADQTEIIDKSDAIENDSELETLTTFEENDAK +NTKSYQELENNDFKEANNDIKGSE IIQRCLEIEEHDDSNIDTNSHDKIEIENNDSNQQEAIEEDIVNDEIEVEEKLSSEIVNPKSEFEVYAEQKYVCVEDDSLFVGKQEINISLIVVKSLLSEMISKIFDTVSDSPHQSLHIINAIINELVDGIKINLEIDPFNKNDQVGDRFTAVSFIVDIIYEVIDKICCVKDLSHQEHDENQEINESQTSHTSLPNKLNLYEDENPIDTLQNETVAESKQPLQELDTSLPVELNLSPKIEGKKMRINQRPTKKEIKIEKDNSKKLSTAKETTGKFKPN DRKRSTTKVLNKSQRRLSFDLENRRRKESISRKLSDMTLDKLNRDFSEVKSDTISDPENNEDLDLTTE FSEDHIDESEKNVTIENKSTEATEDQTVVNNDVEALEQPNEPENIINEPIAAESDDIHIPNESQIQLSDETNKANPEEKELKKPVTKPSNDEDIITVIKRRLSLNQPPTVVNETDTKPRSISTTTKPRPLKRYASLVELSLKR NKNLTKSNEECKNTDDIKEECQIEKNFSEETETKLNLEKEKEENDEIVNKEEIDKSFDAPLDKGENFINQNEIKVTTVLKEECNENEMNEDRKSKMSSVHTVTIEVRDETSEMIGESDVLITEENKPWIIDNWDCNPNMNNDDENKEETIKEFEEIQKPLLPIIVNDIKFELRKKIKTTNYKPAPVENYFTKPADRRDSKPEKPDSKAKVEVKHENFKKNTKENPIEPLEKKTENSFTKLNRTKLKEPILVKAPQKKFNTDETQKIDKSVLYSKYNDLEFRRIKSNIETLKSHIENRKQKPKEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPWESYEMDKIILPPIRVSSSYLSSRSPQLSKRSARPDKSATKN ISHRSDLGYIEPIKEPSKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYRLSLNRINS+KSIRSKSAIRSALFAYLQNSPGSRRALYEVIHNIDKEQ
Sbjct: 1 MESGFSNNKETLRNTLPASPFTDGHTFNNLNLSNENEIKFNEEDEIKQKNTNIRDLNTEIVQQYSCNSAELFHADISIIPSTFEKHPSVTECYQLNDIKEESDEDIESQKVNYLDENIEMRKENQTVLTEIIKKSEDETIAEITNCAINNAATDQQPIETCDNIYEAMNENITTEISNIRSEAATYTNKCNNGSNRNIIQTSSLYEMLRQSTKTHLIAGASLIDDHKEDENFQMTSKEDSKKEVNVTISEVKKENYPKVVKNKISSSRSKSFGSLNIKPHHTISVPQKRTSIDISVLATNPLLKSTSKTNIKKISLPNNIYSKISKPPLVKYNSTSILTNSKSNSNLPVDKRHSAGEIMNRIKPQLSGTSKENLESEFIRFGSQEILNKTRYGRDNEPNATVDIIFIEKSQLAETNEFSETIDLKSDQENNEDTYLNPEIINIDKDNLEIETGKTTEMESEISPSLDQSVELSELMKNETEFDKISDITEKEFSEISEMAPKQDLEEDVIIQANHIQEGTQKEEILHADQTEIIDKSDAIENDSELETLTTFEENDAKNMNTKSYQELENNDFKEANNDIKGSESIIQRCLEIEEHDDSNIDTNSHDKIEIENNDSNQQEAIEEDIVNDEIEVEEKLSSEIVNPKSEFEVYAEQKYVCVEDDSLFVGKQEINISLIVVKSLLSEMISKIFDTVSDSPHQSLHIINAIINELVDGIKINLEIDPFNKNDQVGDRFTAVSFIVDIIYEVIDKICCVKDLSHQEHDENQEINESQTSHTSLPNKLNLYEDENPIDTLQNETVAESKQPLQELDTSLPVELNLSPKIEGKKMRINQRPTKKEIKIEKDNSKKLSTAKETTGKFKPNSDRKRSTTKVLNKSQRRLSFDLENRRRKESISRKLSDMTLDKLNRDFSEVKSDTISDPENNEDLDLTTE----------------FSEDHIDESEKNVTIENKSTEATEDQTVVNNDVEALEQPNEPENIINEPIAAESDDIHIPNESQIQLSDETNKANPEEKELKKPVTKPSNDEDIITVIKRRLSLNQPPTVVNETDTKPRSISTTTKPRPLKRYASLVELSLKRRNKNLTKSNEECKNTDDIKEECQIEKNFSEETETKLNLEKEKEENDEIVNKEEIDKSFDAPLDKGENFINQNEIKVTTVLKEECNENEMNEDRKSKMSSVHTVTIEVRDETSEMIGESDVLITEENKPWIIDNWDCNPNMNNDDENKEETIKEFEEIQKPLLPIIVNDIKFELRKKIKTTNYKPAPVENYFTKPADRRDSKPEKPDSKAKVEVKHENFKKNTKENPIEPLEKKTENSFTKLNRTKLKEPILVKAPQKKFNTDETQKIDKSVLYSKYNDLEFRRIKSNIETLKSHIENRKQKPKEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPWESYEMDKIILPPIRVSSSYLSSRSPQLSKRSARPDKSATKNKISHRSDLGYIEPIKEPSKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYRLSLNRINSNKSIRSKSAIRSALFAYLQNSPGSRRALYEVIHNIDKEQ 1569
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Match: SMESG000069834.1 (SMESG000069834.1) HSP 1 Score: 61.6178 bits (148), Expect = 8.423e-10 Identity = 57/218 (26.15%), Postives = 105/218 (48.17%), Query Frame = 1
Query: 4273 IKSNIETLKSHIENRKQKPKEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPW------ESYEMDKIILPPIRVXXXXXXXXXXXXXKRSARPDKSATKNNISHRSDLGYIEPIKEPS---KSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYXXXXXXXXXXXXXXXXXXXXXXXFAYLQNSPGSRRALYEVIHNID 4899
+K +E L ++ + + KE +P ++NDL PY T + E + +G + R TA+DLC+PW + DKIIL R + + K + + +K +H Y+ +++P K + + LR N + +I+ +Y +TK D YR+ L++++ + + + +AYLQN+PGS++A+ E I N++
Sbjct: 31 VKEKLEHLTEKVKKNQYEKKEFIPDVYNDLHPY--TEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPR--------ENMENKKTPKQKSSNQSKEGSTHLPKY-YVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTY-YAYLQNNPGSKKAIRECIKNLE 236 The following BLAST results are available for this feature:
BLAST of Triadin-like isoform X4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Triadin-like isoform X4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Triadin-like isoform X4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004318 ID=SMED30004318|Name=Triadin-like isoform X4|organism=Schmidtea mediterranea sexual|type=transcript|length=4995bpback to top protein sequence of SMED30004318-orf-1 >SMED30004318-orf-1 ID=SMED30004318-orf-1|Name=SMED30004318-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1586bp MESGFSNNKETLRNTLPASPFTDGHTFNNLNLSNENEIKFNEEDEIKQKNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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