Transposon Ty3-I Gag-Pol polyprotein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004301 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 23Note: Hover over icons to view figure legend
Homology
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 101.293 bits (251), Expect = 9.161e-21 Identity = 85/329 (25.84%), Postives = 150/329 (45.59%), Query Frame = 1 Query: 790 EC--TSPWNSPLVCVKKKNSSDIRICLDYRALNN-ITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVEL-----DDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVL-EALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSI 1743 EC T+PW V + R+ +Y L + +T R + I EL D L GA++F+ ++L + + +D K + + Y PF ++ P Q +++ +L ++ + Y ++LI+S + EH + +V + + N+ S K QF R+ V+FLG ++ G++ +++ + I + P SLR F+ YR F+E ++ ++ L L S Q W E + +F+ LK P+L P PF L+T + + A L Q D GK A+ SR ++ E+ Y ++L I Sbjct: 609 ECPSTAPWEP----VGARMQERARLQEEYWDLQDMLTNRQDY-IQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSY---QPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQ--FYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPI 927
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 101.293 bits (251), Expect = 9.161e-21 Identity = 85/329 (25.84%), Postives = 150/329 (45.59%), Query Frame = 1 Query: 790 EC--TSPWNSPLVCVKKKNSSDIRICLDYRALNN-ITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVEL-----DDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVL-EALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSI 1743 EC T+PW V + R+ +Y L + +T R + I EL D L GA++F+ ++L + + +D K + + Y PF ++ P Q +++ +L ++ + Y ++LI+S + EH + +V + + N+ S K QF R+ V+FLG ++ G++ +++ + I + P SLR F+ YR F+E ++ ++ L L S Q W E + +F+ LK P+L P PF L+T + + A L Q D GK A+ SR ++ E+ Y ++L I Sbjct: 609 ECPSTAPWEP----VGARMQERARLQEEYWDLQDMLTNRQDY-IQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSY---QPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQ--FYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPI 927
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: KRBA2 (KRAB-A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26989]) HSP 1 Score: 56.225 bits (134), Expect = 3.257e-7 Identity = 37/147 (25.17%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 2431 LQLAMKGE-RYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHS-ANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 +Q + GE ++IL DH +KFI L ++++ VV +L + + + G P +++ D G F ++++ + E S YH + G +E R +++ I ++ W L +Q + N F +++++P E +FG K Sbjct: 236 MQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTI-LGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYK 381
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: KRBA2 (KRAB-A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26989]) HSP 1 Score: 56.225 bits (134), Expect = 3.257e-7 Identity = 37/147 (25.17%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 2431 LQLAMKGE-RYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHS-ANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 +Q + GE ++IL DH +KFI L ++++ VV +L + + + G P +++ D G F ++++ + E S YH + G +E R +++ I ++ W L +Q + N F +++++P E +FG K Sbjct: 236 MQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTI-LGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYK 381
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: KRBA2 (KRAB-A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26989]) HSP 1 Score: 55.8398 bits (133), Expect = 3.623e-7 Identity = 37/147 (25.17%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 2431 LQLAMKGE-RYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHS-ANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 +Q + GE ++IL DH +KFI L ++++ VV +L + + + G P +++ D G F ++++ + E S YH + G +E R +++ I ++ W L +Q + N F +++++P E +FG K Sbjct: 163 MQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTI-LGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYK 308
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 325.094 bits (832), Expect = 1.040e-90 Identity = 222/701 (31.67%), Postives = 345/701 (49.22%), Query Frame = 1 Query: 739 EKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKS-DSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNS 2811 E +E+ I + L II +SP + VKKK+ S +R C+DYR LN+IT + +P+P + L GA FF+ +DL NAY+ V + + KTAF+T + + +PFG++ APA FQ L+N VL ++ VYLDDILIFS +L EH + +V Q++ L + KC F + V+FLGHI+ +G+R D KI+ + N+ P K+L+ FLG AN+YR+FI N+++ + L +L SK W+ E +F LK S P+L PD S+ F+++ DAS +GA+LSQ+ GK AY S ++ E Y I +ELL++ ++H+L G FI+ TDHK + + +K+ K + + W + I YR G + DALSR + + + L + + NI S EIE+ +T V I N++++PEE +S+ + H K CH G ++ V F + + +R+ V +C C K + S S+ + I +DF L + G IL ++D SK FISL + S E V + + +G P + DRG F SK ++F ++ SS +H +NGQ ER + + ++ L + SW L V++ NS Sbjct: 538 EAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGS-LRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIHNFSQLAAPLTSLTSSK-TPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSASDGKVHPCAYFSHRLSSAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEY-IKSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSR----------LFDPSDRTSSPDPVLPQRIV--VANI----SWEIESRV--------RTALDGVTPPIGCPPNRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVVKQRFWWPAMARDVRDFVLACSVCAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLP-SSNGNTVILTVVDRFSKAAHFISLPKLPSARETAVAVI--DHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLR-CLVSQNPSSWSQQLSWVEYAHNS 1207
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 324.709 bits (831), Expect = 1.260e-90 Identity = 221/719 (30.74%), Postives = 345/719 (47.98%), Query Frame = 1 Query: 739 EKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSR--KECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKS-DSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG 2859 E +E+ I + L II +SP + VKKK+ S +R C+DYR LN IT + +P+P + L GA FF+ +DL NAY+ V + + + KTAF+T + + +PFG++ APA FQ L+N VL ++ VYLDDILIFS +L EH + +V Q++ L + KC F + V FLGHI+ +G+R D K++ + ++ P K+L+ FLG AN+YR+FI N+++ + L AL S + W++ + +F LK S P+L PD S+ F+++ DAS +GA+LSQ+ GK AY S +N E Y I +ELL++ ++H+L G FI+ TDHK + ++ K+ + Q + W D I YR G + DALSR E +P+ + ++ +T IE+ + +E + P + F +PEE +S+ I H K CH G ++ + F + + IRN V +C C K + S S+ + I +DF L + G IL ++D SK FI L + S E + + +G P + DRG F SK ++F ++ SS +H +NGQ ER + + ++ L + SW L V++ NS +P E G Sbjct: 538 EAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGS-LRPCIDYRGLNAITVKNTYPLPLMSSAFERLQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALT-SLKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKMHPCAYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIQSAKRLNSRQAR-WALFFGRFDFSISYRPGSKNVKPDALSRIFDHSERA-------SSPETIVPRRLFISAVTWEIES---RVRMALEGVTPPPGCPPSRLF----------------VPEELRSDVIRWGHSSKLACHPGVSRTLYLIKQRFWWPVMARDIRNFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHIALDFVTGLPPS-NGNTVILTVVDRFSKATHFIPLPKLPSARETAAAVI--DHVFRIHGLPTDVVSDRGPQFISKFWREFCHLMGATVSLSSGFHPQSNGQTERANQDLERMLR-CLVSQNPSSWSQQLSWVEYAHNSLPVSATGLSPFECSLG 1223
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 323.168 bits (827), Expect = 2.270e-90 Identity = 225/763 (29.49%), Postives = 364/763 (47.71%), Query Frame = 1 Query: 739 EKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLT-LMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKS-DSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG--KKIYSEWFSEIVEEEKTN--QPTNREFQIGDCVLIKVNVRNKG 2982 E +E+ I + L II +SP + VKKK+ S +R C+DYR LN+IT + +P+P + L GA FF+ +DL NAY+ V + + KTAF+T + + +PFG++ APA FQ L+N VL ++ VYLDDILIFS +L EH + +V Q++ L + KC F + V+FLGHI+ +G+R D KI+ + ++ P K+L+ FLG AN+YR+FI N+++ + L +L SK W+ E +F LK S P+L PD S+ F+++ DAS +GA+LSQ+ GK AY S ++ E Y I +ELL++ ++H+L G FI+ TDHK + ++ K+ + Q + W + I YR G + DALSR + + ++ L ++ NI W+ S+ +T V I +++++PEE +S+ + H K CH G ++ + F + + +R+ V +C C K + S S+ + I +DF L + G +L ++D SK FISL + S E V + + +G P + DRG F S+ ++F ++ SS +H +NGQ ER + + ++ L + SW L V++ NS + +P + G ++ SE+ Q R + L++V R K Sbjct: 512 EAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGS-LRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTSLTSSKM-PFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIRSAKRLNSRQAR-WALFFGRFNFTISYRPGSKNIKPDALSR----------LFDPSDRLSSPDPVLPQGIVVANIS--WEIESRV-------------RTALNGVTPPIGCPPSRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVIKQRFWWPTMARDVRDFVLACSVCAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLP-SSNGNTVVLTVVDRFSKAAHFISLPKLPSARETAVAVI--DHVFRIHGLPTDVVSDRGPQFVSRFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLR-CLVSQNPSSWSQQLSWVEYAHNSLPVSSTGLSPFQCSLGYQPPVFPSLESEVAVPSVHAFVQRCRRTWNRARQTLLRVGTRTKA 1242
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR855320.1 (pep chromosome:GRCz11:1:7956030:7961696:1 gene:ENSDARG00000099359.2 transcript:ENSDART00000159655.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR855320.1) HSP 1 Score: 322.783 bits (826), Expect = 4.970e-90 Identity = 231/766 (30.16%), Postives = 363/766 (47.39%), Query Frame = 1 Query: 739 EKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENI-WQKNSK---EIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKS-DSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG--KKIYSEWFSEIVEEEKTN--QPTNREFQIGDCVLIKVNVRNKG 2982 E + + I + L II +SP + VKKK+ S +R C+DYR LNNIT + +P+P + L GA FF+ +DL NAY+ V + + K+AF+T + + +PFG++ APA FQ +N VL ++ VYLDDILIFS +L EH I +V Q++ L + KC F + V FLGHI+ +G+R D KI+ + N+ P K+L+ FLG AN+YR+FI N+++ + L AL SK W+ E +F LK S P+L PD S+ F+++ DAS +GA+LSQ+ GK AY S ++ E Y I +ELL++ ++H+L G FI+ TDHK + + +K+ K + + W + I YR G + DALSR + + + L+ + + I NI W+ SK ++ + I P + F +PE+ +S+ I H K CH G ++ + F L + +R+ V +C C K + S S+ + I +DF L + G IL ++D SK F+ L + S E T V ++ + + +G P + DRG F SK ++F ++ SS +H +NGQ ER + + ++ L + SW L V++ NS +P + G ++ SE+ Q R + L++V VR K Sbjct: 540 EAMGKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGS-LRPCIDYRGLNNITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRAGDEWKSAFNTPRGHFEYCVLPFGLSNAPAVFQAFVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHIRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGLRMDPEKIKAVVNWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTSSK-TPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYYSHRLSAAESNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEY-IKSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSR----------LFDSSERTSSLEPVVPKRIV--ISNITWEIESKVRAALDGVTPPIGCPPSRLF----------------VPEKLRSDVIRWGHSSKVACHPGVSRTSFVIKQRFWWPALARDVRDFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPPS-NGNTVILTVVDRFSKAAHFVPLPKLPSARE-TAVAVINHVFRI-HGLPTDVVSDRGPQFISKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLR-CLVSQNPSSWSQQLSWVEYAHNSLPVSATGLSPFQCSLGYQPPVFPSLESEVAVPSVHAFVQRCRRTWSRARQTLLQVGVRTKA 1270
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR925755.2 (pep chromosome:GRCz11:17:42486740:42492668:-1 gene:ENSDARG00000116402.1 transcript:ENSDART00000183946.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR925755.2) HSP 1 Score: 315.849 bits (808), Expect = 9.152e-88 Identity = 215/718 (29.94%), Postives = 343/718 (47.77%), Query Frame = 1 Query: 739 EKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLT-LMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKS-DSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG 2859 E +E+ I + L II +SP + VKKK+ S +R C+DYR LN+IT + +P+P + L GA FF+ +DL NAY+ V + + KTAF+T + + +PFG++ APA FQ L+N VL ++ VYLDDILIFS +L EH + +V Q++ L + KC F + V+FLGH + +G+R D KI+ + N+ P K+L+ FLG AN+YR+FI N+ + + L L SK W++ E +F LK S P+L PD S+ F+++ D S +GA+LSQ+ GK AY S ++ E Y I +ELL++ ++H+L G FI+ TDHK + + +K+ K + + W + I YR G + DALSR + + + L + NI W+ S+ +T V I +++++PE+ +S+ I H K CH G ++ + F + + +R+ V +C C K + S S+ + I +DF L + G +L ++D SK F+ L + S E V + + +G P + DRG F SK ++F ++ SS +H +NGQ ER + + ++ L + SW L V++ NS +P + G Sbjct: 511 EAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGS-LRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHTVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIRNFRQLAAPLTNLTSSK-TPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDVSEVGVGAILSQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVSTDHKNLEY-IKSAKRLNSRQARWALFFGRFNFSISYRPGSKNIKPDALSR----------LFDRSDRTSSPDPVLPQRVFVANIS--WEIESRV-------------RTALDGVTPPIGCPPSRLFVPEDLRSDVIWWGHSSKVACHPGVSRTLFVIKQRFWWPVMARDVRDFVLACSVCAASKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLP-SSNGNTVVLTVVDRFSKAAHFVPLPKLPSARETAVAVI--DHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLR-CLVSQNPSSWSQQLSWVEYAHNSLPVSATGLSPFQCSLG 1196
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 336.65 bits (862), Expect = 5.841e-99 Identity = 181/468 (38.68%), Postives = 274/468 (58.55%), Query Frame = 1 Query: 574 HISEDKIINNLISTFDGIFMKHKWDVGKTELLKHEILTKGSPIVINPRRQPIHLI-----EKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKK-LMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG-GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKE 1956 H+S+ + ++ ++ +F + G+T +H++ T G+ + P R P + + +++ I EML +G+I+ SPW SP+V V KK+ S R C+DYR LN++T +P+P DELLD L AK+ +T+DL Y+Q+ L +++ K+AF T Y F MPFG+ APATFQRL+N +L + + YLDDI +FS+T EH +++VF +I+ A L + P KC EV++LGH +G +R D +K+E I + PK K + FLG + YYRKFI NY+ +K L L ++ + ++WT ECE++ LK L S+PVL PDFS+ FIL TDAS +GAVLSQ + G+E +AY SR + E Y KE L+I + + YLYG++F + TDH ++++ + + W L + IQ+RKG H+NAD LSR+E Sbjct: 298 HLSQQDQLRKILRSYSPMFSANP---GRTHWAEHKVDT-GTQL---PIRSPAYRVAEAVRPEMKSQIDEMLAFGVITPSHSPWASPVVLVPKKDGS-TRFCVDYRRLNDVTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTVMPFGMRNAPATFQRLVNRLLEGMQ-DFAQAYLDDIAVFSQTWEEHLQHLQRVFAQIQDAGLTLKPEKCHLAMAEVQYLGHRVGGGQLRPDPAKVEAICQWPIPKTQKQVLAFLGTSGYYRKFIPNYSTVAKPLTDLTSRQRSRTIVWTPECESAMNALKQALASSPVLAAPDFSRRFILQTDASNFGLGAVLSQVNTYGEEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWLQRV-SGDNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSRQE 755 HSP 2 Score: 59.6918 bits (143), Expect = 3.456e-8 Identity = 54/234 (23.08%), Postives = 97/234 (41.45%), Query Frame = 1 Query: 2473 IDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKKIYSE-------W-----------------FSEIVEEEKT------------------NQPTNREFQIGDCVLIKVNVR-NKGDNRYMGPGVITKKIHDRSYEI 3045 +D+ +++ A++ D TV L + + G P I D+G F S+L++ + + +SSPYH NG ER T++ ++ T + K W LP + F Q++ +P E+++G+++ W F + +E+ + + R F GD VL+ V R +K + GP V+T K+HD +Y + Sbjct: 1 MDYATRYPEAVALRKIDAPTVADALIQI-FSRVGFPSEILSDQGPQFTSQLLQCLWQRCGVRAIHSSPYHPQTNGLCERFNGTLKTMLR-TFVESGEKDWERYLPHLLFAYREVPQESTGFSPFELLYGRRVRGPLDLLCEYWEGAPQSQEVPIIPYVLKFRQRLEQMTSLAHDHLSAAQQRQKVWYDRKARERRFMEGDKVLLLVPTRHDKLQAAWEGPYVVTHKLHDTTYVV 232
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 308.145 bits (788), Expect = 1.417e-85 Identity = 169/498 (33.94%), Postives = 280/498 (56.22%), Query Frame = 1 Query: 535 DEINTIMENSFKNHISEDKIINNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSK-----------QKKL------------MWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRK 1953 D N+++ +K+ + + ++ +F ++ D+G + KH+I L + P RR +E + ++++E+ GII E SP+ SP+V V+KKN S IR+C+DYR LN T + P ++ L+ L G+K+FS +DL + YYQ+ + K KTAF + FNRMP G+ APATFQRLM +G+++ +VYLDD+++F +TL EH + KVF +++ LK+SP KCQF + V ++GH++ +GI TD SKIE + ++ +P+ + LR FLG YYR+F++ ++K ++ L L S K+L WT+EC+ +F LK LT PVL + D +KP+ L DAS + +G +L Q+ + R +A+ SR+++ E Y + E L++ + YLYG +F ++TD+ +T+++ T K + W+ L+ ++YR G ++ +AD LSR+ Sbjct: 277 DLSNSVIPPEWKSRLRKH------LNEHSALFSRNDLDMGCSTSTKHKIRLREDKPFRERSRRIAPGDLEDLRKHLEELKAAGIIKESRSPYASPIVVVRKKNGS-IRMCVDYRTLNQRTIPDQYTTPRIEDALNCLVGSKWFSVLDLRSGYYQLPMHPEDKEKTAFICPLGFFEFNRMPQGLCGAPATFQRLMERTVGDMHLLEVLVYLDDLIVFGRTLEEHEQRLLKVFDRLEKEGLKLSPEKCQFCQPSVNYVGHVVSAEGIATDPSKIEAVSSWPKPRTITELRSFLGFCGYYRRFVKGFSKVAQPLNQLLQSNTEVEGSDRDILAKRLRGQGWTRESIEDFWTEECDKAFDQLKYCLTHAPVLAYADATKPYTLHIDASREGLGGILYQEYNKELRPVAFISRSLSPSERNYPAHKLEFLALKWAVVDKLHEYLYGAEFEVQTDNNPLTYILTTAK-LDATGHRWLAALAHYKFSLRYRPGRDNRDADGLSRR 766 HSP 2 Score: 97.0561 bits (240), Expect = 1.568e-19 Identity = 60/250 (24.00%), Postives = 119/250 (47.60%), Query Frame = 1 Query: 2116 DKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 D Y+ + ++ +P++++ ++ H + H G +K V + F ++Q + + +SC C +RK ++ +S S L + + +DF ++ G +L + DH++++ K Q TV ++L E + + YG P+ I+ D+G+ FESKL+ + + + ++PYH + Q ER RT+ D + TL ++ W + V NST +P ++FG++ Sbjct: 882 DGLVYRRAPSATDSEKWQLMLPQKHRDSVLMALHDEHGHLGYDKTLGLVRDRFYWPCMKQDVEDYCRSCLRCIQRKTLPSRAAPLSHMESHSPL-DLVCIDFLS-IEPDEGGTSNVLVVTDHYTRYAQAFPTKDQRAITVAKVLVERFFIHYGLPKRIHSDQGRDFESKLVHELMSMLGVLKSRTTPYHPQGDPQPERFNRTLLDMLG-TLPKEKKTHWSRHIATVVHAYNSTKNGATGYSPYFLMFGRE 1128
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000035398.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:9869556:9871940:-1 gene:ENSXETG00000011182.1 transcript:ENSXETT00000035398.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 281.182 bits (718), Expect = 5.006e-80 Identity = 207/727 (28.47%), Postives = 334/727 (45.94%), Query Frame = 1 Query: 745 IEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIIC------KSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIER------QFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGK 2862 ++E I E L+ G I TSP + V+KK+ +R C+DYR LN IT + +P+P EL D L GAK FS +DL AY + + + + KTAF+T+ Y + MPFG+ APA FQ +N + +L +VYLDDILIFS+ L H S +++ +++ +L KC F+ ++ FLG+II G D +K+ I+ + P+ K+++ F+G ANYYR+FI+ ++ + +L + W +F++LK S VL+ P+ PF ++ DAS GA+LSQ+ GK AY S+ + E Y I +ELL++ ++H L G + TDHK + F+ K+ P+ W S + YR G + ADALSR + ++ E + + +++ E I S + PD T ++P E + + + H K+ H G+ K + + + +R+ V +C C TTK C S+ + + +DF L + G I +ID SK F+ L + S E + +L + +G P I DRG F S+ + + + + +SS YH NG ER QF +R+ + + D W D+LP +F N+ + ++P V+G+ Sbjct: 18 MKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGG-LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQ-NPRQARWSLFFSRFHFVLTYRPGTKNRKADALSR---SFSPEDRLPIEREPIIPPSRIIASVLPQFAEQILLSQS----------AAPPD------------TPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCA-----TTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFVPLRKLPSAVE--LAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQF--LRNHVSLCQDD-----WSDLLPWAEFAHNNARHSSTGRSPFLSVYGQ 702
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000034712.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:33567219:33572531:-1 gene:ENSXETG00000011772.1 transcript:ENSXETT00000034712.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 283.108 bits (723), Expect = 6.609e-77 Identity = 239/917 (26.06%), Postives = 401/917 (43.73%), Query Frame = 1 Query: 244 VKLVCLLDTGAKISVIDYNIFKKLG-NLNMTTSNLKLRCANDSPIEICGKTLLNXXXXXXXXXXXXE----FVVAKDINPKLIG---------GIDF----LERFGMQLQ----IENRTDEINTIMENSFKNHISEDKIINNLISTFDGIFMK-HKWDVGKTELLKHEILTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIIC------KSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIER------QFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGK 2862 + + LD+GA + +D KK+G +L T ++++ +D P+ TL ++ +E ++ +P ++G ID+ + R+ Q I + T+ SF S + +++ F+ H+ +LL + +G ++P ++E I E L+ G I TSP + V+KK+ +R C+DYR LN IT + +P+P EL D L GAK FS +DL AY + + + + KTAF+T+ Y + MPFG+ APA FQ +N + +L +VYLDDILIFS+ L H S +++ +++ L KC F+ ++ FLG+II G D +K+ I+ + P+ K+++ F+G ANYYR+FI++++ + +L + W +F++LK S VL+ P+ PF ++ DAS GA+LSQ+ GK AY S+ + E Y I +ELL++ ++H L G + TDHK + F+ K+ P+ W S + + YR G + ADALSR I + P + + + +++ E I S + T ++P E + + + H K+ H G+ K + + + +R+ V +C C TTK C S+ + + +DF L + G I +ID SK FI L + S E + L + +G P I DRG F S+ + + + + +SS YH NG ER QF +R+ + + D W D+LP +F N+ + ++P V+G+ Sbjct: 352 IPVSAFLDSGAAGNFMDLAFAKKVGISLFPVTPSIRVFAIDDRPLSTDTITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLGLPWLRLHNPSIDWSSGQISRWSQYCQRHCLIPQPLQRV-TVSSTSFSALPSVYRDFSDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAE-----TAAMKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGG-LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQ-NPRQARWSLFFSRFNFVLTYRPGTKNRKADALSRSFSPE--DRLPIEQEPIIPPFRI-IASVLPQFAEQILLSQSAAPSD----------------------TPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCA-----TTKASHSRPCGLLHPLPIPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFIPLRKLPSAVE--LAHLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQF--LRNHVSLCQDD-----WSDLLPWAEFAHNNASHSSTGRSPFLSVYGQ 1220
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000042189.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460667.1:82848:87648:1 gene:ENSXETG00000017765.1 transcript:ENSXETT00000042189.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 282.722 bits (722), Expect = 8.627e-77 Identity = 238/917 (25.95%), Postives = 401/917 (43.73%), Query Frame = 1 Query: 244 VKLVCLLDTGAKISVIDYNIFKKLG-NLNMTTSNLKLRCANDSPIEICGKTLLNXXXXXXXXXXXXE----FVVAKDINPKLIG---------GIDF----LERFGMQLQ----IENRTDEINTIMENSFKNHISEDKIINNLISTFDGIFMK-HKWDVGKTELLKHEILTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGK--KFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYH--KKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIIC------KSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSK---FISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIER------QFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGK 2862 + + LD+GA + +D KK+G +L T ++++ +D P+ TL ++ +E ++ +P ++G ID+ + R+ Q I + T+ SF S + +++ F+ H+ +LL + +G ++P ++E I E L+ G I TSP + V+KK+ +R C+DYR LN IT + +P+P EL D L GAK FS +DL AY + + + + KTAF+T+ Y + MPFG+ APA FQ +N + +L +VYLDDILIFS+ L H S +++ +++ L KC F+ ++ FLG+II G D +K+ I+ + P+ K+++ F+G ANYYR+FI++++ + +L + W +F++LK S VL+ P+ PF ++ DAS GA+LSQ+ GK AY S+ + E Y I +ELL++ ++H L G + TDHK + F+ K+ P+ W + + + YR G + ADALSR I + P + + + +++ E I S + T ++P E + + + H K+ H G+ K + + + +R+ V +C C TTK C S+ + + +DF L + G I +ID SK FI L + S E + L + +G P I DRG F S+ + + + + +SS YH NG ER QF +R+ + + D W D+LP +F N+ + ++P V+G+ Sbjct: 352 IPVSAFLDSGAAGNFMDLAFAKKVGISLFPVTPSIRVFAIDDRPLSTDTITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLGLPWLRLHNPSIDWSSGQISRWSQYCQRHCLIPQPLQRV-TVSSTSFSALPSVYRDFSDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAE-----TAAMKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGG-LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSHIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQ-NPRQARWSLFFTRFNFVLTYRPGTKNRKADALSRSFSPK--DRLPIEQEPIIPPFRI-IASVLPQFAEQILLSQSAAPSD----------------------TPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCA-----TTKASHSRPCGLLHPLPIPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFIPLRKLPSAVE--LAHLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQF--LRNHVSLCQDD-----WSDLLPWAEFAHNNASHSSTGRSPFLSVYGQ 1220
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 84.3445 bits (207), Expect = 1.084e-15 Identity = 67/282 (23.76%), Postives = 126/282 (44.68%), Query Frame = 1 Query: 925 ELLDILDGAKFFSTIDLGN------AYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTK-DSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSI 1743 EL D L GA +F+ ++L + +D + F + Y PF + + +++ +L ++ I + ++L++S + EH + +V + + N+ S K QF R+ + LG I G++ +++ + I P + L+ + L YR F+EN+ + ++ L S+ W +E + + ++LK +PVL P PF L+TD + + A L Q D GK+ A+ SR ++ E+ Y +L I Sbjct: 912 ELFDQLHGAAWFTKLELLGIKESEMRHTVTHTEDTWRASFGFGLHQMRCY---RPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLLSSE--PYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPI 1188
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 84.3445 bits (207), Expect = 1.084e-15 Identity = 67/282 (23.76%), Postives = 126/282 (44.68%), Query Frame = 1 Query: 925 ELLDILDGAKFFSTIDLGN------AYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTK-DSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDG--GKERVIAYGSRAMNKHELGYCITRKELLSI 1743 EL D L GA +F+ ++L + +D + F + Y PF + + +++ +L ++ I + ++L++S + EH + +V + + N+ S K QF R+ + LG I G++ +++ + I P + L+ + L YR F+EN+ + ++ L S+ W +E + + ++LK +PVL P PF L+TD + + A L Q D GK+ A+ SR ++ E+ Y +L I Sbjct: 912 ELFDQLHGAAWFTKLELLGIKESEMRHTVTHTEDTWRASFGFGLHQMRCY---RPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLLSSE--PYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPI 1188
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 8.864e-100 Identity = 256/797 (32.12%), Postives = 398/797 (49.94%), Query Frame = 1 Query: 658 TELLKHEILTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSD----IRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTD-ECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLT---LMTDNIENIWQKNSKEI---ENIKENIS-----LMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYHK-----------------------------------KLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSK---LFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQD----EKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQI--TLKDKRHKSWVDILPEVQFMLN----STFQKTIRKTPAEMVF 2856 T KH I TK + + + P +++E IQ+ML GII SP+NSP+ V KK + RI +DYR LN IT PIPN DE+L L +F+TIDL ++Q+E+D S KTAFSTK Y + RMPFG+ APATFQR MN +L L +VYLDDI++FS +L+EH ++ VF+K+ ANLK+ KC+F ++E FLGH++ DGI+ + KIE I+ + P K ++ FLGL YYRKFI N+ +K + C K K+ T+ E +++FK LK ++ P+LK PDF+K F L TDAS +GAVLSQ DG ++Y SR +N+HE+ Y KELL+I + T F+HYL G+ F + +DH+ ++++ + K + W LS D +I+Y KG + ADALSR + E + + + +T L T N + I+ K +I + K++I+ +M + +Y+ + ++I + E I HK KL H G K + + + I+N++ C C K + T ++ K+ K E +D + +G+ Y+ ID +SKF +L +K++D + ++R+ + G P+++ DR +F S +K + E +E+ ++ + IER +TI + I+I T D+ K L +++ +LN T T +TPA + Sbjct: 194 TNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK-CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQ-DG---HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDP-NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIMTREKAEQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYAEFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNT--DMPTKTTPKPEHCREKFMIDI-----YSSEGKHYV-SCIDIYSKFATLEEIKTKDWIECKNALMRIFNQ-----LGKPKLLKADRDGAFSSLALKRWLESEEVELQLNTT--KTGVADIERLHKTINEKIRIIKTSDDEETK-----LSKMETVLNIYNHKTKHDTTGQTPAHIFL 964
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 3.378e-93 Identity = 197/486 (40.53%), Postives = 281/486 (57.82%), Query Frame = 1 Query: 529 RTDEINTIMENSFKNHISEDKIINNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPI---HLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKK----NSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECE 1962 R D +N E +FK + L++ F + K + T +KH + T SPI ++ P+ H IE +E +QEML G+I E SP+NSP V KK ++ R+ +DYR LN IT +PIPN DE+L L ++F+TIDL ++Q+E+D+ S KTAFSTKS Y + RMPFG+ APATFQR MN +L L +VYLDDI+IFS +L EH ++I+ VF K+ ANLK+ KC+F +KE FLGHI+ DGI+ + K++ I ++ P K +R FLGL YYRKFI NY +K + + + K E +F+ LK + P+L+ PDF K F+L TDAS +GAVLSQ I++ SR +N HEL Y KELL+I + T F+HYL G++F++ +DH+ + ++ K+ + + W LS +I Y KG ++ ADALSR + E Sbjct: 159 RLDHLN--QEETFK--------LKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIY--SKQYPLAQTHEIE-VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEP-GAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2) HSP 1 Score: 318.546 bits (815), Expect = 1.433e-87 Identity = 251/880 (28.52%), Postives = 417/880 (47.39%), Query Frame = 1 Query: 667 LKHEILTKGSPIVINPRRQPIHLIEKIEENI----QEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKE--RVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSR----------KECETCVQCQMIHENPKMGKLKTRLLTLMTDNI--ENI-----WQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYHKKLC---HAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKE--EIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAV-KSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG-----------KKIYSEWFSEI---------------------VEEEKTNQPTNRE--FQIGDCVLI------KVNVRNKGDNRYMGPGVITKKIHDRSYEIKLENGSSVTR--NIEWLK 3093 +KH+I K P PR QP H+ EK E+ I Q++L I SP +SP+V V KK+ + R+C+DYR LN T FP+P D LL + A+ F+T+DL + Y+Q+ ++ + KTAF T S +Y + MPFG+ AP+TF R M +L + VYLDDILIFS++ EH+ ++ V +++K NL + KC+F +E +FLG+ IG I + K I++F PK VK + FLG+ NYYR+FI N +K ++ ++ K + WT++ + + + LK L ++PVL + + L TDAS D IGAVL + D + V+ Y S+++ + Y ELL I HF++ L+GK F LRTDH ++ ++ K + Q W++ L+ D ++Y G + ADA+SR + +T +P + + L N+ E++ +QK + E ++N SL + +Y+ +++ +P + ++ + YH H G +S + L+ SI +++C CQ K + + + ++ + + I +DF L IL ++D SK A K+ D ++ LL +G PR I DR + ++ + I+ SS H +GQ ER +T+ ++ + ++W LP+++F+ NST +T+ K+P E+ G ++ + F+ + +E E N + IGD VL+ K K Y+GP + KKI+D +YE+ L + R N+++LK Sbjct: 610 VKHDIEIK--PGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT-FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVN--VYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISL-LSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQ----------DRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD-ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNI-QNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLK 1468
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q99315|YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3) HSP 1 Score: 318.546 bits (815), Expect = 1.974e-87 Identity = 252/882 (28.57%), Postives = 416/882 (47.17%), Query Frame = 1 Query: 667 LKHEILTKGSPIVINPRRQPIHLIEKIEENI----QEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKE--RVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSR----------KECETCVQCQMIHENPKMGKLKTRLLTLMTDNI--ENI-----WQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYHKKLC---HAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKE--EIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAV-KSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG-----------KKIYSEWFSEI---------------------VEEEKTNQPTNRE--FQIGDCVLI------KVNVRNKGDNRYMGPGVITKKIHDRSYEIKLENGSSVTR--NIEWLKVF 3099 +KH+I K P PR QP H+ EK E+ I Q++L I SP +SP+V V KK+ + R+C+DYR LN T FP+P D LL + A+ F+T+DL + Y+Q+ ++ + KTAF T S +Y + MPFG+ AP+TF R M +L + VYLDDILIFS++ EH+ ++ V +++K NL + KC+F +E +FLG+ IG I + K I++F PK VK + FLG+ NYYR+FI N +K ++ ++ K + WT++ + + LK L ++PVL + + L TDAS D IGAVL + D + V+ Y S+++ + Y ELL I HF++ L+GK F LRTDH ++ ++ K + Q W++ L+ D ++Y G + ADA+SR + +T +P + + L N+ E++ +QK + E ++N SL + +Y+ +++ +P + ++ + YH H G +S + L+ SI +++C CQ K + + + ++ + + I +DF L IL ++D SK A K+ D ++ LL +G PR I DR + ++ + I+ SS H +GQ ER +T+ ++ ++W LP+++F+ NST +T+ K+P E+ G ++ + F+ + +E E N + IGD VL+ K K Y+GP + KKI+D +YE+ L + R N+++LK F Sbjct: 584 VKHDIEIK--PGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT-FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVN--VYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISL-LSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQ----------DRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD-ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLR-AYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKF 1444
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P0CT39|TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 6.617e-87 Identity = 245/836 (29.31%), Postives = 400/836 (47.85%), Query Frame = 1 Query: 724 PIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQK-DGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYG--KKFILRTDHK-AITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCV--------QCQMIHENPKMGKLKTRLLTLMTDNIE--NIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENK--SEFIIEYHK--KLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEI-ICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKF-ISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMV--------------FGKKIYS------EWFSEIVEEEKTNQPTNR-----------EFQIGDCVLIK------VNVRNKGDNRYMGPGVITKKIHDRSYEIKLENG 3060 P ++ + + I + LK GII E + P++ V KK + +R+ +DY+ LN + I+P+P ++LL + G+ F+ +DL +AY+ + + + K AF + + MP+GI+ APA FQ +N +LGE + + Y+DDILI SK+ +EH ++ V QK+K ANL I+ AKC+F + +VKF+G+ I E G + I+ + +++PK K LR FLG NY RKFI ++ + L L K + WT + +N+K L S PVL+ DFSK +L+TDAS +GAVLSQK D K + Y S M+K +L Y ++ KE+L+I H++HYL + F + TDH+ I + + + W L + EI YR G ++ ADALSR ET +++ K +++T T++ + N+ K +E ENI L +G+++ + ++I +P + + I +YH+ KL H G + + F K + + I+ VQ+C CQ K K + + +E++ +DF L + G + ++D SK I + KS + R+ + I +G P+ I D F S+ KDFA +N + +S PY +GQ ER +T+ ++ + +WVD + VQ N+ + TP E+V F K + F + E TN + EFQ GD V++K ++ NK + GP + +K +YE+ L + Sbjct: 421 PPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGT-LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLL-KKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVE---ENIQLK---------DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN-TWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5S6QWV2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 536.569 bits (1381), Expect = 1.291e-166 Identity = 306/938 (32.62%), Postives = 496/938 (52.88%), Query Frame = 1 Query: 262 LDTGAKISVIDYNIFKKLGNLNM-TTSNLKLRCANDSPIEICGKTLLNXXXXXXXXXXXXEFVVAKDINPKLIGGIDFLERFGMQLQIENRTDEINTIMENSFKNHISEDKIINNLISTFD----------------------------GIFMKHKW-------DVGKTELLKHEILTKGS-PIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETC----VQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENI------SLMPD------KTFYKYVNGVIMTNNN--KIW-------------IPEENKSEFIIEYHKKLC--HAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 +DTGA +S++ + +F + ++ N++L A + + G + +N+ + K V P LIG DFL + + + T ++N + +SE I ++T D +F K+K D+G+T +++H I T + PI + PRR P I++ + ML+ G+I +SPW+ P+V KKKN S R C+DYR LN+ TE+ + P+P D+ LDIL G+++FST+DL + Y+QVE++ + KTAFST + Y F MPFG+ APATFQRLM VL L W +VYLDDI+IF +T E +E+V +++ A LK+ P+KC+ +EV FLGH++ GI TD K T++N+E P+C LR F+GLA+YYRKF++N+ + L L K K+ W D+CE +F+ +K +L + P+LKFPDF+K F+LD DAS D +GAVLSQ E IAY SRA+ K E YC TR+ELL++ + + HF+ YLYG +F +RTDH + ++ ++ Q W+ L+ DMEI +R G H+NADALSR+ C C + P T D + N Q +I+ +KE I S P+ + F+ N +I+ N ++W +P + E + E H H G + F + + I+ ++C+ C RK + ++++ + F+ + +DF GPL G+RY+L ++D+ +K+ +A ++ + KTV ++L + +I ++G P ++ D+G+SFE+ L+ + + I+ +++ YH +NG +ER RT+ D + + L + ++W ++LP F N++ T +P +FG++ Sbjct: 13 IDTGAAVSLMSHELFNDIQPADLLPIQNVRLITAAGDELRVVGTSTVNISIGKSPPTSHTLLVAHSLTCPCLIGA-DFLRQHKCIIDFTSGTLQMNGYEVKLKTDRLSEHSIATASLATEDLRTYEEIIDSMCASGATENDYETREQLKKLFWKYKGVLPTTDDDLGRTSVVRHRIRTGNAKPIKMGPRRMPHRDRPIIQDLVDRMLQQGVIERASSPWSFPVVLAKKKNGS-FRFCVDYRKLNDRTEKDVQPLPRIDDALDILSGSRWFSTLDLASGYWQVEVEPEDRPKTAFSTPTGSYQFRVMPFGLCNAPATFQRLMEQVLEGLQWKTCLVYLDDIIIFGRTTTEQMERLEEVLNRLQAAGLKVKPSKCKLMTQEVVFLGHVVSGKGISTDPLKCATVENWEPPRCTNELRQFIGLASYYRKFVKNFASIAAPLHRLL-QKDKRWSWDDDCERAFQEMKRRLLTAPILKFPDFNKTFVLDVDASNDGLGAVLSQVHDDGEHPIAYASRALTKPERRYCATRRELLALVWASKHFRPYLYGTRFKVRTDHNCLIWLNNFREP-EGQIARWLERLAEFDMEICHRPGKLHDNADALSRQTCGQCGKAVIPVAYAQAEP----------TQQQDQM-NTAQNQDGDIKTLKEWIAQDCWPSSCPEGVSRELRIFWGQRNALILDNGTLFRLWETPNSQRPLKLLVVPSHMRREILEELHDAPAGGHLGERRTLEKARCRFYWPGMAKDIKLWCRTCDACACRKGPSRRSRQPLQSIQTGYPFQRVGIDFLGPLPKTTTGKRYVLVVVDYFTKWTEAYATENMEAKTVAKVLVDNFITRFGPPESVHSDQGRSFEATLLAETFQLLGIKKTHTTSYHPQSNGLVERFNRTLLDTLAL-LSKRSPETWDEMLPWTTFAYNTSSHDTTGTSPFLALFGRE 934
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5J4NFG7 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0001986 PE=4 SV=1) HSP 1 Score: 535.413 bits (1378), Expect = 2.598e-162 Identity = 317/929 (34.12%), Postives = 492/929 (52.96%), Query Frame = 1 Query: 220 SVTVMINNVKLVCLLDTGAKISVIDYNIFKKLGNLNMTTSN-LKLRCANDSPIEICGKTLLNXXXXXXXXXXXXEFVVAKDINPKLIGGIDFLERFGMQLQIENRTDEINTIMENSFK-----------------------NHISEDKIIN-------NLISTFDGIFMKHKWDVGKTELLKHEILTKG-SPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKP---FILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTF-----------YKYVNGVIM---TNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG 2859 SV IN ++ L+DTGA S+I + +L +N ++L AN + +++ + L+ V S + +F+ + K I G+DFL FG L +++ I + + + K NH+ D+ + +L+S F +F G+T ++HEI T PI PRR P+H + ++ I +ML+ II SPW+SP+V V+KKN + +R+C+DYR LN IT R FPIP D LD L GA++FS +DL + Y+QVE+ + + KTAF S Y F MPFG+A APATFQRLM L L + ++YLDDI+++ +T+ EH + + V ++++ LK+ +KC F ++EV FLGH+I DGI+TD +K E IKN+ RP+ V+++R FLGLA+YYRKFI+ + + + L L K + W+DEC SF+ LK KLT+ P+L FPD S F+LDTDAS IGAVLSQ+ E VIAY SR ++K E Y TR+ELL++ +F HF+ YL GK F +RTDH+++ ++ + Q W L D +YR+G H NADALSR + V ++++ + L I NI+++ + + K + M K F + ++GV+ + K+ P+ + + + H +L HAG K + + + + + SCE C K T + + + + VD GPL + +G RYIL ++D+ +K+ ++ QD TV + EWI +YGAP +++ D+G +FES+L+K+ I+ ++PYH NG +ER RTI+ +Q L+ + W ++LP ++ T R TPA + FG Sbjct: 281 SVRGRINKEPILFLVDTGASCSLIHSRLAARLTKHRTAPANPVRLLAANGTEMQVA--SFLSASVQLGSFSGEHQFLACPHLQWKAILGMDFLGHFGGVLNLKDSQMTIGSCLVDLEKGRPADACSAVDSKAEVPFVSEVLNHLKSDESLLPMKTQLIHLLSEFKDVFALGNDAPGRTNWVQHEIDTSDHRPIRHAPRRLPVHYEQHLDTMITDMLEKRIIRPSVSPWSSPIVLVRKKNGT-LRLCVDYRKLNEITARDSFPIPRIDATLDALHGAQWFSALDLASGYWQVEVRPSDRGKTAFVVPSGLYEFETMPFGLANAPATFQRLMQKALQGLVPSQCLIYLDDIIVYGRTVAEHNNNLRDVLERLRSTGLKLKGSKCHFLQREVTFLGHVIAADGIKTDPAKSEQIKNWPRPQTVENVRSFLGLASYYRKFIQGFAEIATPLHRLT-EKGRPFTWSDECSASFETLKDKLTTPPILAFPDVSDEAGKFVLDTDASNVSIGAVLSQETPEGEVVIAYASRCLDKCERNYSTTRRELLALIHFLRHFRPYLLGKPFKVRTDHQSLQWLRNFRDP-EGQVARWQERLQEYDFVCEYRRGLRHGNADALSRVTVPSEVNTTLLYDADTVWAED----QLSDSYIANIYKRQAD--GSSKPSAIEMRQKPFDERALWGHWKDLRLIDGVLYRMDQSGPKLITPKLKVAAVLQKIHTELGHAGQLKTEAAIRQRYWWPGIHADVVTQCSSCETCSAIKNHTPGPRAPLEPVVTEHPGQRVGVDIMGPLPVTRRGNRYILVLVDYFTKWSEAVPIERQDACTVAAAIINEWIARYGAPTMLHSDQGAAFESQLLKETCHLLGIKKTRTTPYHPQGNGLVERTNRTIKALLQSFLERHQADRWDELLPRCMLAYRASIHTTTRYTPAYLTFG 1198
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5S6PYL2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 530.791 bits (1366), Expect = 2.972e-162 Identity = 325/1026 (31.68%), Postives = 523/1026 (50.97%), Query Frame = 1 Query: 262 LDTGAKISVIDYNIFKKLGNLNMT-TSNLKLRCANDSPIEICGKTLLNXXXXXXXXXXXXEFVVAKDINPKLIGGIDFLERFG----------------MQLQIENRTDEINTIMENSFKNHISEDKIINNL-----------------ISTFDGIFMKHKWDVGKTELLKHEILTKGS-PIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQT--WINHLSGLDMEIQYRKGDNHNNADALSRKECETC------VQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKN----SKEIENIKENISLMPDKTFYKYV-NGVIMTNNNK---------IWIPEENKSEFIIEYHKKL--CHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKKIY--------------SEWFSEIVEEEKTN------------------QPT-------NREFQIGDCVLIKVNVRNKGDNRYMGPGVITKKIHDRSYEI 3045 +DTGA +S++DY + L + N+++ A S ++I G ++V + K V P LIG DFL R G ++L+ E+ D ++ + + S D++I+ + +S + + D+G+T +++HEI T + PI I PRR P +E + ML+ G+I + + PW+ P+V KK+ S +R C+DYR LN +TE+ + P+P D+ LD L G+ +FST+DL + Y+QVE++ + KTAFST S Y F MPFG+ APATFQRLM VL L W +VYLDDI++F++T E +++V +++ A LK+ P+KC+ EV FLGH I +GI TD SK ++ + P+C+ LR FLGLA+YYRKF++N+ + L L K K +W +CE +F+ LK L S PVL+ PDF+K FILD DAS + +GAVLSQ E IAY SR ++K E YC TR+ELL++ + T HF+ YLYG +FI RTDH + ++ ++ P+ QT W+ L+ DMEI++R G H+NADALSR C C + C + P ++ T + W +N S+ E N+ ++ + ++ +G+++ + I +P +++ + H + H G + + F + + + +SC+ C +RK + + + F+ + +DF GPL G+RY+L + D+ +K+ +A ++ + TV +LL + +I ++G P ++ D+G++FE+ LM + +++ ++PYH +NG +ER RT+ D + KD + W D+LP F N++ +T +P +FG++ +E + V+E + N Q T FQ GD V + V + K R+ GP VI KKI D Y + Sbjct: 27 IDTGAAVSLMDYKLLGILQPARLLDVRNIRVLTATGSEMKIAGTCTVDVSIGGAPAKKHTVLVAHGLTCPCLIGA-DFLRRHGCVIDFTTGILQIGSYDVELKSESGNDRTIALIGPAQRELGSCDEVIDAMCSKSTAPQEVLVPLRKTLSKYRDVISMTDDDLGRTSVVRHEIRTGNAKPIKIGPRRTPYRHRSTMETLVNRMLQQGVIEQASGPWSFPVVLAPKKDGS-LRFCVDYRKLNEVTEKNVQPLPRIDDALDALAGSSWFSTLDLASGYWQVEVEARDRPKTAFSTPSGLYQFRVMPFGLCNAPATFQRLMEKVLEGLQWRTCLVYLDDIIVFARTPIEQMQRLDEVLNRLQKAGLKLKPSKCKIMTTEVVFLGHTISANGIATDASKCAAVERWHPPRCLNELRQFLGLASYYRKFVKNFATIAAPLHRLL-RKDSKWVWNQDCEQAFQQLKRNLLSAPVLRLPDFTKTFILDVDASGEGLGAVLSQCFADGEHPIAYASRTLSKPERRYCATRRELLALVWGTKHFRPYLYGARFIARTDHNCLVWLNSFRE---PEGQTARWLERLAEFDMEIRHRPGRLHDNADALSRPLCPQCGKQLVSIDCAQVTLPPPQNDMRDAQDTDDEIKVLKDWIRNGNWPSRCPEGTSRNLRILWGQKDALFLDDGILLRRWDDCSRQQPRRLIVVPSRMQAQVLRGLHDGVGGGHFGKQRTLAKARSRFYWPGMAKDVDLWCKSCDVCARRK-GYRRNRLPLQPLLAGYPFQRVGIDFLGPLPTTTNGKRYVLAVCDYFTKWTEAYATENMEATTVAKLLIDNYITRFGPPESVHSDQGRNFEALLMTELFRLLDVKKTRTTPYHPQSNGLVERFNRTLLDTLAALAKDFPDR-WDDMLPWATFAYNTSNHETTGISPFLALFGREARLPIDLQYDLPASDNTESLTTYVQELRKNLEHVHAAIRQHLHAKQQGQKTYYDRRRHGNPFQNGDRVWLAVPQKGKISARWDGPFVIKKKITDHVYRL 1044
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5J4NKR9 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0004666 PE=4 SV=1) HSP 1 Score: 535.413 bits (1378), Expect = 6.010e-162 Identity = 317/929 (34.12%), Postives = 492/929 (52.96%), Query Frame = 1 Query: 220 SVTVMINNVKLVCLLDTGAKISVIDYNIFKKLGNLNMTTSN-LKLRCANDSPIEICGKTLLNXXXXXXXXXXXXEFVVAKDINPKLIGGIDFLERFGMQLQIENRTDEINTIMENSFK-----------------------NHISEDKIIN-------NLISTFDGIFMKHKWDVGKTELLKHEILTKG-SPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKP---FILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTF-----------YKYVNGVIM---TNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG 2859 SV IN ++ L+DTGA S+I + +L +N ++L AN + +++ + L+ V S + +F+ + K I G+DFL FG L +++ I + + + K NH+ D+ + +L+S F +F G+T ++HEI T PI PRR P+H + ++ I +ML+ II SPW+SP+V V+KKN + +R+C+DYR LN IT R FPIP D LD L GA++FS +DL + Y+QVE+ + + KTAF S Y F MPFG+A APATFQRLM L L + ++YLDDI+++ +T+ EH + + V ++++ LK+ +KC F ++EV FLGH+I DGI+TD +K E IKN+ RP+ V+++R FLGLA+YYRKFI+ + + + L L K + W+DEC SF+ LK KLT+ P+L FPD S F+LDTDAS IGAVLSQ+ E VIAY SR ++K E Y TR+ELL++ +F HF+ YL GK F +RTDH+++ ++ + Q W L D +YR+G H NADALSR + V ++++ + L I NI+++ + + K + M K F + ++GV+ + K+ P+ + + + H +L HAG K + + + + + SCE C K T + + + + VD GPL + +G RYIL ++D+ +K+ ++ QD TV + EWI +YGAP +++ D+G +FES+L+K+ I+ ++PYH NG +ER RTI+ +Q L+ + W ++LP ++ T R TPA + FG Sbjct: 281 SVRGRINKEPILFLVDTGASCSLIHSRLAARLTKHRTAPANPVRLLAANGTEMQVA--SFLSASVQLGSFSGEHQFLACPHLQWKAILGMDFLGHFGGVLNLKDSQMTIGSCLVDLEKGRPADACSAVDSKAEVPFVSEVLNHLKSDESLLPMKTQLIHLLSEFKDVFALGNDAPGRTNWVQHEIDTSDHRPIRHAPRRLPVHYEQHLDTMITDMLEKRIIRPSVSPWSSPIVLVRKKNGT-LRLCVDYRKLNEITARDSFPIPRIDATLDALHGAQWFSALDLASGYWQVEVRPSDRGKTAFVVPSGLYEFETMPFGLANAPATFQRLMQKALQGLVPSQCLIYLDDIIVYGRTVAEHNNNLRDVLERLRSTGLKLKGSKCHFLQREVTFLGHVIAADGIKTDPAKSEQIKNWPRPQTVENVRSFLGLASYYRKFIQGFAEIATPLHRLT-EKGRPFTWSDECSASFETLKDKLTTPPILAFPDVSDEAGKFVLDTDASNVSIGAVLSQETPEGEVVIAYASRCLDKCERNYSTTRRELLALIHFLRHFRPYLLGKPFKVRTDHQSLQWLRNFRDP-EGQVARWQERLQEYDFVCEYRRGLRHGNADALSRVTVPSEVNTTLLYDADTVWAED----QLSDSYIANIYKRQAD--GSSKPSAIEMRQKPFDERALWGHWKDLRLIDGVLYRMDQSGPKLITPKLKVAAVLQKIHTELGHAGQLKTEAAIRQRYWWPGIHADVVTQCSSCETCSAIKNHTPGPRAPLEPVVTEHPGQRVGVDIMGPLPVTRRGNRYILVLVDYFTKWSEAVPIERQDACTVAAAIINEWIARYGAPTMLHSDQGAAFESQLLKETCHLLGIKKTRTTPYHPQGNGLVERTNRTIKALLQSFLERHQADRWDELLPRCMLAYRASIHTTTRYTPAYLTFG 1198
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y2TRM5 (Transposon Ty3-I Gag-Pol polyprotein OS=Araneus ventricosus OX=182803 GN=TY3B-I_784 PE=4 SV=1) HSP 1 Score: 525.398 bits (1352), Expect = 1.824e-161 Identity = 329/962 (34.20%), Postives = 492/962 (51.14%), Query Frame = 1 Query: 139 LTSNELNVLNRDKRNDIIVYDKMQGRPSVTV--MINNVKLVCLLDTGAKISVIDYNIFKKLGNLNMTTSNLKLRCA-NDSPIEICGKTLLNXXXXXXXXXXXXEF-VVAKDINPKLIGGIDFLERFGMQLQIENRTDEIN------TIMENSFKNHISEDKIINNLISTFDGIFMKHKWDVGKTELLKHEILTKGSPIVIN-PRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKEC-ETCVQCQMIH------------------------------ENPKMGKLKTRLLTLMTDNIEN--IWQKNSKEIENIKENISL-----MPDKTFY-KYVNGVIMTNNNKIWIPEENKSEFIIEYHKKLC--HAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKKI 2868 LT L LN+ + V GR + + I + + L+DTGA ++ L + ++ K R A D P ++C K +L + + V+ D PK+I + + I R E + +I+EN + + + L+ F +F DVG+ + +H I T P + PRR P+ E+ E ++EM+ GII E + PW SP+V VKKK+ S R C+DYR LN IT + +P+P D+ LD L+G+++FST+DL + Y+QVE+ K KTAF+T + F MPFG+ APATF+RLM VL L +VYLDDI+I +T EH + I KVFQ+++ ANLK+SP KC+F RKE +LGHII DG++TD K + + ++ RP+ V LR FLGL YYR+F+ N++ ++ L L ++ WT+ECE SF +LK L ++PVL +P K FILDTDAS + IGAVLSQK G +E VIAY S+++ K E YC+TRKELL+I HF HYLYG+KF+LRTDH ++ +++ ++ Q WI L D+EIQ+RKG +H NADALSR+ C E+C C E+P + + R L N E+ WQ+ + E K +L + D Y K+ + ++ ++ +P+ E + E H H G K F L + + C C RK T+TK + + FE + +D GPL + KG RY+L ++D+ +K+ + Q+ TV L WI +YG P I++ D+G +F S L + + I ++ H ++G +ER RTI + + + + K W LP S + TPA+M+FG+ + Sbjct: 5 LTGRRLPFLNKAPEEGLKVSALCGGRNGLYLEGSICGIPCLMLVDTGANVT------------LGVPEASGKFRYAVTDFPSQVCQKGVLVAATLVDLKKEAIPVRVLNLDHKPKIIDKGAVIATCEPVVDIVARPQEFSESLRLPSILENLEGLNEEQRTAVKELLQEFQNLFSTSDSDVGRCNMTQHRINTGNHPPIKQYPRRLPLAKKEEAERLVKEMVDNGIIEESSGPWASPIVLVKKKDGS-TRFCVDYRKLNEITIKDSYPLPRIDDTLDALNGSQWFSTLDLKSGYWQVEIQPEDKEKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLTSEACLVYLDDIIIVGRTFQEHLNNIRKVFQRLQKANLKLSPKKCRFFRKEFSYLGHIISADGVKTDPEKTKAVVDWPRPETVHDLRSFLGLCTYYRRFVRNFSAIARPLHKLTEARS-NFNWTEECEKSFNSLKQALITSPVLTYPRTDKEFILDTDASNEGIGAVLSQKIGNEECVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFREP-EGQIARWIQRLQEYDIEIQHRKGTSHGNADALSRRPCKESCKHCTNAEKKFGMETDISMKALTTEDAWSSSEVQKAQLEDPAIRPILERKL-----NSEDRPSWQEIAPESPATKRYWALWDSLHLKDGVLYRKWESDDGSSSRWQLILPKSRIQEVLRETHDSASGGHFGVMKTLSKTRERFYWDRLRADVEKWCRECHACGARKGPKTRTKGRLQRYNVGAPFERMALDILGPLPVTTKGNRYVLVLMDYFTKWPEAIPIPDQEASTVAEELVRAWISRYGVPTILHSDQGTNFNSALFTELCKLLGILKTRTTALHPESDGMVERFNRTILNHLSLFV-SKNQTDWDTHLPLFLLAYRSADHEATGCTPADMLFGRTL 945
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000045469.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000976.1:426503:430633:1 gene:ENSAMXG00000030479.1 transcript:ENSAMXT00000045469.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 462.996 bits (1190), Expect = 4.865e-139 Identity = 270/818 (33.01%), Postives = 444/818 (54.28%), Query Frame = 1 Query: 604 LISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDS----KVLEALCGSKQKKLM---------WTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHEL---GYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECET---CVQCQMIHENPKMG----KLKTRLLTLMTDNIENI------------------------WQKN----SKEIENIKENISLMPDKTFYKYV--NGVIMTNNN---------KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 L+ +F +H D+G T L++H I L P+ RR P + ++ +IQE++++ ++ +SP+ SP+V V+KK+ S IR+C+DYR LN T + FP+P +E LD L G+K+FST+DL + Y QV + + K KTAF T + FNRMPFG+ AP+TFQRLM + G+ +++ ++YLDDI+IFS L +H ++ V +++ NLK+ KC F + V +LGH+I E G+ TD KI + +++RP VK +R FLG A+YYR+F+E + + K++ AL GSK++ W + CETSF+ LK +L PVL F DF++PFI++ DAS +GAVLSQ+ GK R IA+ SR + E Y + ELL++ + T F+ YL G +F + TD+ ++++ K A Q W + L+ + E++YR G ++ NADALSR +T V + I P++ + +R +++ ++ I W++ ++E+ N +E + + + + + V GV+ + ++ +P+ ++E ++ H + H G + V + Q I+ CE C K K + + ++ E + +DF L+ A G+ +L + D SKF +AV Q TVVR+L E+W YG P+ I+ D+G+SFE +L+K E + IE + ++PYH NGQ ER RT+ D ++ TL ++ + W +LP + F N+T ++ + +P E++FG+K Sbjct: 324 LLRRHQNLFSEHAGDLGCTTLVQHSIPLLDSVPVRQRYRRLPPSQYDLVKAHIQELVEHQVVRPSSSPYASPIVVVQKKDGS-IRLCVDYRQLNAKTRKDAFPLPRIEESLDALSGSKWFSTLDLASGYNQVPVLEKDKEKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDQSFHTLLLYLDDIVIFSSDLQQHLQRLDMVLSRLQQHNLKLKLEKCHFFQTRVSYLGHVISESGVETDPEKIRAVVDWKRPTTVKEVRSFLGFASYYRRFVEGFAALAAPLHKLVGALQGSKKQPRSKMHSIVIPHWDEVCETSFRALKDRLVRAPVLGFADFTRPFIVEIDASHTGLGAVLSQEQEGKRRPIAFASRGLRPSERNMSNYSSMKLELLALKWAVTEKFREYLLGTQFTVYTDNNPLSYLQSAKLAAVE--QRWASQLALFNYELKYRPGTSNGNADALSRLPADTDQSSVGVRGISVPPEVPLADKETASRSQVVISSTVDAIPSRSSVDLQILQAADPLIAAFSVYWRRGQAPTARELRNEREGVKEL-VRQWQRIVERQGVLYRSVQLPPAKHTVFQLVLPKALQTEVLLALHDQHGHQGMERTTDLVRQRCYWPKMWQDIKKWCTECERCSIAKAMHPKVRTFMGSLLATRPLEILAMDFTV-LERASNGQENVLVLTDVFSKFTQAYAVADQKASTVVRVLVEKWFYVYGVPKRIHSDQGRSFEGELLKHLCETYGIEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPPEKKRKWPQLLPHLLFAYNTTIHQSTQYSPYELLFGQK 1135
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041682.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002320.1:24977:29035:1 gene:ENSAMXG00000038531.1 transcript:ENSAMXT00000041682.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 459.914 bits (1182), Expect = 4.224e-138 Identity = 270/816 (33.09%), Postives = 433/816 (53.06%), Query Frame = 1 Query: 583 EDKIINNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDS----KVLEALCGSKQK------KLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHEL---GYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHEN------P-KMGKLKTRLLTL-------------------MTDNIENIWQKN-----SKEIENIKENISLMPDKTFYKYVNGVI--MTNNN-------KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 + ++ +L+ + +F + + ++G T L++HEI L +P+ RR P + ++ +IQE+L +I SP++SP+V V+K++ + IR+C+DYR LN+ T + +P+P +E LD L GA+FFST+DL + Y QV + + K KTAF T + FNRMPFG+ AP+TFQRLM + G+ + ++YLDDI+IFS T + H +E V ++++ NLK+ +KC F + +VK+LGH+I G+ TD KI+ + +ERP+ V LR FLG A+YYR+F+E + K + +++ L G K++ + W+D CE +F+ LKLKL S PVL + DFSKPFIL+ DAS +GAVLSQ G R IAY SR + E Y + ELL + + T F+ YL G +F + TD+ ++++ K Q W++ L+ + I+YR G ++ NADALSR C Q E P ++G K + T+ + W + + + KE + L+ + +GV+ +T ++ +PE + E + H H GA + V + + I + C C K+ K + + S SK E I +DF + A G +L I D SKF + Q TV +L E+W YG P+ I+ D+G++FES L+K + ++++ + ++PYH NGQ ER RT+ D ++ TL ++ + W LP++ F N+T +T +P E++FG++ Sbjct: 285 QSQLGKDLLQRYSSVFSQDEGELGCTHLIEHEIPLIDDTPVKQRYRRLPPSQYDLVKGHIQELLDRKVIRASCSPYSSPVVVVQKRDGT-IRLCVDYRQLNSKTRKDAYPLPRIEESLDALGGARFFSTLDLASGYNQVPMAEHDKSKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDERFQSLLLYLDDIVIFSSTFDLHLQRLEVVLKRLQQNNLKLKLSKCHFFQSQVKYLGHVISSAGVATDPEKIKAVSEWERPQTVTQLRSFLGFASYYRRFVEGFAKHASPLHRLVAVLQGGKRRVKTKPVEGHWSDACEEAFETLKLKLVSAPVLGYADFSKPFILEIDASHGGLGAVLSQDQEGGRRPIAYASRGLRDSERNMSNYSSMKLELLGLKWAVTEKFREYLLGAQFTVYTDNNPLSYLQTAKLGAVE--QRWVSQLALFNFNIKYRPGLSNRNADALSR--LPACPTPQSFQETVSGISIPLQVGATKATISTIDAVPLRPKADLQRLQSADPVIGPFLQYWHRQKFPTAGERAQESKEVLELVRQWNKLRECDGVLYRLTRTPDGVEEFLQLVLPECLQKEVLTALHDNHGHQGAERTASLVRQRCFWPHMWKKIERWCKECSRCVVAKMGQPKIRTFMGNLSASKPLEIIAIDFTL-MDRASDGRENVLVITDVFSKFTQAFPTQDQRASTVAHILVEKWFYVYGVPQRIHSDQGRNFESDLLKSLCKIYDVKKSRTTPYHPQGNGQCERFNRTMHDLLR-TLPSEQKRRWPKYLPQLLFAYNTTVHQTTAHSPYELMFGRQ 1093
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000054230.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:19483082:19487098:1 gene:ENSAMXG00000038338.1 transcript:ENSAMXT00000054230.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 452.981 bits (1164), Expect = 1.203e-135 Identity = 267/820 (32.56%), Postives = 432/820 (52.68%), Query Frame = 1 Query: 583 EDKIINNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDS----KVLEALCGSKQKK-------LMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHEL---GYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKE----------CETCVQCQMIHENPKMGKLKTRLLTLMTDNIENI----------------WQKNSKEIENIKENIS-------------LMPDKTFYKYV---NGVIMTNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICK-SDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 E ++ +L+ ++ +F H D+G T L++HEI L P+ RR P E ++ +I ++L+ ++ E +SP+ SP+V VKKK+ S +R+C+DYR LN+ T + FP+P +E LD L GA++FST+DL + Y QV + + K KTAF T + +NRMPFG+ AP+TFQRLM + G+ + ++YLDDI++FS ++++H +E V +++ LK +KC F ++EV +LGH+I G+ TD +KIE + ++RP+ V LR FLG A+YYR+F+E + + + K++ AL GSK KK + WT +CE SF+ LK +L S PVL + DFS PFIL+ DAS+ +GAVLSQ+ G R +AY SR + E Y + E L++ + T F+ YL G K ++ TD+ ++++ K + W L+ D EI+YR G ++ NADALSR+ T V + +P + + + L + +I W+K + K +S + D Y+ V +G + ++ +P K E + + H+ H G + V + I+ + CE CQ K D + S+ E + +DF L+ + G +L + D SK+ + Q TV ++L EW K+G P I+ D+G+SFES L++ F + +E + ++PYH + NGQ ER RT+ + ++ TL R + W LP+V F N+T + ++P ++FG++ Sbjct: 260 EQGVVRSLLQKYNSVFSAHDGDLGCTNLIEHEIPLLDNIPVRQRHRRIPPSDYELVKAHIDQLLEAQVVRESSSPYASPIVLVKKKDGS-LRMCVDYRLLNSKTRKDAFPLPRIEESLDALSGARWFSTLDLASGYNQVPVAEQDKPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGDQQYQSLLLYLDDIIVFSSSVSQHLQRLEVVLGRLQKEGLKAKLSKCVFFKQEVGYLGHVISNKGVSTDPAKIEAVAQWQRPRTVSELRSFLGFASYYRRFVEGFAQLAGPLHKLVAALVGSKTKKGSGQALGMAWTAQCEQSFEALKARLVSAPVLAYADFSLPFILEIDASYSGLGAVLSQEHDGAVRPVAYASRGLRPPERNMDNYSSMKLEFLALKWAMTEKFREYLLGHKCVVYTDNNPLSYLQSAK--LGAMEHRWAAQLAAFDFEIKYRSGRSNKNADALSRQYQLGPSVTEYVPGTPVPELVQQASPVVSATQALVSVLPGSSPVDIHSLQDADPLLREVLVFWRKQVQPTSAEKRQVSRPAMALLRQWDRLVERDGVLYRRVFRPDG--GEESFQLLLPAVLKPEVLKQLHQDHGHQGIERTSELVRQRCYWPGMFADIKQWCRECERCQVAK-DAGPVPHSFMGHLLASRPNEIVAIDFTV-LEPSRNGLENVLVMTDVFSKYTIAVPTRDQRASTVAQVLLREWFYKFGVPGRIHSDQGRSFESALIQQFCHLYGVERSRTTPYHPAGNGQCERFNRTLHNLLR-TLPTSRKQDWASNLPQVIFCYNTTPHQGTGESPYYLMFGQE 1071
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041754.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001938.1:55959:59870:1 gene:ENSAMXG00000043385.1 transcript:ENSAMXT00000041754.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 440.654 bits (1132), Expect = 1.432e-131 Identity = 263/809 (32.51%), Postives = 429/809 (53.03%), Query Frame = 1 Query: 604 LISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDS----KVLEALCGSKQK--------KLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHEL---GYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCV----------------------QCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSK------EIENIKENISLMPDKTFYKYV--NGVIM---------TNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQ-ITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG 2859 L + IF K + D+G T L+ HEI L P+ RR P ++ +IQ++L +I E +SP++SP+V V KK+ S +R+C+DYR LN T R +P+P +E LD L GAK+FST+DL + Y QV +++ K KTAF T + FNRMPFG+ AP TFQRLM + G+ + ++YLDD+++FS+T+ EH +E+VF +++ NLK+ +KCQF + +V +LGH++ +G+ TD +KIE +K ++ P + LR FLG A+YYR+F+E ++K + +++ L G ++K W ECE +F++LK +LTSTPVL + DF+KPFI++ DAS +GAVLSQ+ GK R IA+ SR + E Y + ELL++ + T F+ YL G +F + TD+ ++ + K Q W + L+ + I+YR G ++ NADALSR+ E QC+ + P +L I +W+ S+ E + N+S + + + + V GV+ + ++ +P+ + E + H H G + + + ++ Q + Q C+ C K K + + E + +DF L+ A G+ +L + D +K+ A K Q TV L + W ++G P I+ D+G++FES L+K + ++I+ + ++ Y NGQ ER RT+ D ++ + +++KRH W LP++ F N+T +T +TP ++FG Sbjct: 275 LFQKYSNIFAKSEGDLGCTSLISHEIPLLDEVPVRQPYRRIPPSQYSTVKAHIQQLLDSRVIRESSSPFSSPIVLVTKKDGS-LRLCVDYRQLNAKTRRDSYPLPRIEESLDALCGAKWFSTLDLASGYNQVPVEEKDKSKTAFCTPFGLFEFNRMPFGLCNAPGTFQRLMERIFGDCRYQSVLLYLDDVIVFSQTVEEHLERLEEVFSRLQKQNLKVKLSKCQFFQHQVSYLGHVVSAEGVTTDPAKIEVVKEWKSPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHRLVGGLSGPRRKGKTPKTSLAAFWDAECEQAFQSLKDRLTSTPVLAYADFNKPFIVEVDASHGGLGAVLSQEQEGKVRPIAFASRGLRPTERNMENYSSMKLELLAVKWAVTEKFREYLLGHQFTIYTDNNPLSHLQTAKLGAVE--QRWASQLASFNFTIKYRPGKHNQNADALSRQYLERFAVGTKVPPLVMEAVHEERSALENQCRQVVAFPGRSPSDLGVLQRADPVIGPVWKFRSEGRRPRTEERDTLCNLSKVLIRQWDRLVEREGVLYRRAYPSGRGSEYFQLLLPQCLQKEVLHSVHDDHGHQGTERTLQLLRDRCFWPNMTQDVERWCQQCQRCTLGKAVQPKVRAFQGTLQAAHPNEILAIDFTI-LEPASDGKENVLILTDIFTKYTQAIATKDQRASTVAWALVQHWFHRFGPPVRIHSDQGRNFESLLIKQLCKVYSIQKSRTTSYRPQGNGQCERFNRTLHDLLRTLPVEEKRH--WPRHLPQLTFAYNTTPHQTTGQTPHFLMFG 1077
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000037150.1 (pep primary_assembly:Astyanax_mexicanus-2.0:10:22265216:22268869:1 gene:ENSAMXG00000033912.1 transcript:ENSAMXT00000037150.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 420.239 bits (1079), Expect = 8.056e-125 Identity = 255/820 (31.10%), Postives = 417/820 (50.85%), Query Frame = 1 Query: 577 ISEDKI--INNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGS------KQKKL------MWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHEL---GYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRK-------------------ECETCV----QCQMIHENPKMGKLKTRLLTLMTDNIENI--WQKNSKEIENIKENISLMPDKTFYKYV------NGVIM---------TNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFG 2859 +SE+++ ++ L + IF + + D+G T LL HEI L P+ RR P E ++ +IQ++L +I SP++SP+V V KK+ S +R+C+DYR LN T R +P+P +E LD L GAK+FST+DL + Y QV + + + KTAF T + FNRMPFG+ APATFQRLM + G+ + ++YLDD+++FS ++ +H + +VF +++ LK+ +KC F + +V +LGH++ +G+ TD +KI+ ++ + RP + LR FLG A+YYR+F+E ++K + L L G K K L W + CE +F++LK +LTS PVL + DFSKPFI++ DAS +GAVLSQ+ GK R IA+ SR + E Y + ELL++ + T ++ YL G + + TD+ ++ + K T Q W + L+ + +I+YR G ++ NADALSR+ E E V QC + L LL I + ++K + + P K ++ +GV+ ++ +P+ + E + H H G + + + + + + Q C C K K + ++ E + +DF L+ A G +L + D +K+ + Q TV ++L + W ++G P I+ D+G++FES L++ + I+ + ++ Y NGQ ER RT+ D ++ TL + W L + F N+T +T KTP ++FG Sbjct: 280 LSEEQMAAVSLLFDQYQDIFAQTEGDLGCTTLLTHEIPLLDEVPVRQPYRRIPPSQYEAVKLHIQQLLDSKVIRNSASPYSSPIVLVTKKDGS-LRLCVDYRQLNAKTRRDAYPLPRIEESLDALAGAKWFSTLDLASGYNQVPVSEKDRYKTAFCTPFGLFEFNRMPFGLCNAPATFQRLMERMFGDCRYQSVLLYLDDVIVFSSSVEQHLERLAEVFSRLQKQGLKVKLSKCHFFQPQVNYLGHVVSREGVATDPAKIDAVRGWRRPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHQLVGKLGGARRKGKTLPVPLAASWDERCEKAFQSLKERLTSAPVLAYADFSKPFIVEVDASHGGLGAVLSQEQEGKVRPIAFASRGLRPAERNMDNYSSMKLELLAVKWAVTEKYREYLLGNEVTILTDNNPLSHLQTAKLGATE--QRWASQLASFNFKIKYRPGKSNQNADALSRQYVDRFAIGTKVPPLRMELLESEPMVHKTGQCTEMVALAGRSALDLHLLQEADPVIGPVCKFRKEGRYPRAEEREALSSPTKALFRQWDRLLEKDGVLYRAVQPSGGGPETCQLLLPKHLQEEVLSSVHDDHGHQGVERTLKQLQSRCFWPGMAKHVERWCQQCRRCVLSKAVQPKIRAFQGTLQATRPHEILAIDFTL-LEPASDGRENVLVLTDVFTKYTQAIPTRDQRASTVAQVLVQHWFHRFGLPSRIHSDQGRNFESMLIQQLCNMYGIQKSRATAYRPQGNGQCERFNRTLHDLLR-TLPQSEKRRWPHYLSPMVFAYNTTPHQTTGKTPYYLMFG 1094
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009777.1 (pep scaffold:Pmarinus_7.0:GL476990:135790:139231:-1 gene:ENSPMAG00000008837.1 transcript:ENSPMAT00000009777.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 62.7734 bits (151), Expect = 1.368e-10 Identity = 49/248 (19.76%), Postives = 106/248 (42.74%), Query Frame = 1 Query: 2134 YVNGVIMTNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESK----LMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 Y G + + EE+K + H H G + + + ++ K + IR+ + +CE C+++ + + K+ S +E + +D GP + R++L I+D+ +K+ L + Q VV L ++G P+ + C+ + + ++ + + F + I+ H ANG + +RD ++ RH+ W L + F +++ R +P ++ G++ Sbjct: 51 YYTGQKSGRKRLVVMNEEDKRSILQRVHGAD-HCGQTRTRKLLEEHYYWKGMVNDIRDYINACEICKQKSYKRSSISHVKLLKA-SYPWEVLGMDLLGPFPATSRAHRFVLLIVDYFTKWAELTPMTDQSAAHVVAALTTA-FHRFGFPKKLFCNVSEEYVAQINEEMFRHFPMCSGLAIS-----HLWANGAHRGTSQALRDC--VSKATGRHRDWELQLEQRLFEYHTSKHSATRYSPFYLMLGRE 288
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004123.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107321:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004123.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.521 bits (114), Expect = 6.227e-6 Identity = 34/150 (22.67%), Postives = 69/150 (46.00%), Query Frame = 1 Query: 2182 EENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMK 2631 E+ K ++ H H G K + + ++ + ++N++ SC C+ + + K+ S +E + +D GPL + + RY+L +ID+ SK+ + + ++ V L + +YG PR + GK F +++ K Sbjct: 75 EDEKRNILMSVHGA-GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVCRNKGSRRVAMPSMKLLKA-SGPWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHVASALTVVFC-RYGFPRKVFSSLGKEFVTQVNK 221
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004121.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107330:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004121.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.1358 bits (113), Expect = 8.108e-6 Identity = 34/151 (22.52%), Postives = 69/151 (45.70%), Query Frame = 1 Query: 2182 EENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKD 2634 E+ K ++ H H G K + + ++ + ++N++ SC C+ + + K+ S +E + +D GPL + + RY+L +ID+ SK+ + + ++ V L + +YG PR + GK F +++ K Sbjct: 75 EDEKRNILMSVHGA-GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVCRNKGSRRVAMPSMKLLKA-SGPWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHVASALTVVFC-RYGFPRKVFSSLGKEFVTQVNKS 222
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO33875 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR01]) HSP 1 Score: 63.1586 bits (152), Expect = 3.504e-12 Identity = 30/86 (34.88%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 1162 DDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANY 1419 DD++ F + EH IE++ Q ++ + K S K QF + VKFLGH+I ++G+R K++ I+ +E P + LR F+G+ + Sbjct: 1 DDVICFHSSFEEHLRGIERMLQAVRASGFK-SIKKSQFATRSVKFLGHVIDQNGVRPQPEKLD-IRQWETPTNEEELRKFIGVCTF 84
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO33090 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST86]) HSP 1 Score: 53.9138 bits (128), Expect = 2.333e-7 Identity = 31/118 (26.27%), Postives = 53/118 (44.92%), Query Frame = 1 Query: 1057 FNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYL-DDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLG 1407 + R G+ + + LM VLG+L G +V L DD+ T +E +S ++ Q + NL++S +K K LG I ++ ++ T+ P V +R F+G Sbjct: 209 YTRCAMGMPGSETALEELMCRVLGDLLAEGVVVKLADDLYCGGNTPHELFSNWKRTLQALHECNLRLSASKTIINPKTTTILGWIWSAGTLKASPHRVATLAQCPTPTTVGLMRSFIG 326
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO43256 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZD2]) HSP 1 Score: 48.1358 bits (113), Expect = 5.385e-6 Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 973 LGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNE 1197 + + Y+ +L DA+ L F+T ++ F RMPFGI+ A Q+++ G++ G + DDI++ KT E Sbjct: 1 MSSCYWHKKLTDAASLLCTFNTPFGRFRFRRMPFGISCASEVAQKMVEEHFGDI--EGVLPVYDDIIVSGKTEAE 73
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000039099.1 (pep primary_assembly:ASM223467v1:16:31928608:31932747:-1 gene:ENSORLG00000023909.1 transcript:ENSORLT00000039099.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 461.07 bits (1185), Expect = 2.338e-138 Identity = 265/822 (32.24%), Postives = 432/822 (52.55%), Query Frame = 1 Query: 580 SEDKIINNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALC----GSKQKKLM-------WTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHE---LGYCITRKELLSIFYFTGH-FKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECE-----------TCV--QCQMIHENPKMGKLKTRLLTLMTDNIENI----------------WQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNN---------------KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 E + + L+ + +F H+ D+G T L+ HEI L +P+ RR P +E+I +L+ +I E +SP+ SP+V ++KK+ +R+C+DYR LN+ T + FP+P +E LD L GA++FST+DL + Y+QV + +A + KTAF T + +NRMPFG+ AP+TFQRLM + GE ++YLDDI++FS T+ +H +E V ++++L LK+ AKC F + +V +LGH+I + G+ TD K+E + N+E P V LR F+G A+YYR+F+E + K + L L G+K +K WT+EC+ SF+ LK KLT+TPVL + DFS+PFIL+ DAS +GAVLSQ+ GK R IAY SR + E + Y R E L++ + F+ YL G+K I+ TD+ ++++ K + Q W L+ D+EI+YR G ++ NADALSR+ +C+ Q + + +G + ++ L + ++ W++ ++ + +S P + N ++ +I +P + E + H++ H G ++ + + + CE CQ KV + + SK E + +DF L+ G +L I D SK+ A + Q TV ++L EW K+G P I+ D+G+SFES L++ + + +E + ++PYH NGQ ER RT+ D ++ TL R + W LP++ + N+T + ++P ++FG++ Sbjct: 307 GEQEKVRTLLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDGG-LRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFILEVDASNGGLGAVLSQEQEGKVRPIAYASRGLRPTERNPVNYSSMRLEFLALKWAVAEKFREYLLGQKCIVYTDNNPLSYLSTAK--LGAMEQRWAAQLAAFDLEIRYRSGRSNRNADALSRQHFPDMQAWRDVLPGSCLPMSLQQVQQTETVGTTQATMVALPHHSPSDMASLQGADPVLKEFLPFWERQTRPSPEERRQLS-SPTLALLRQWNRLVEQGGVLYRRVFRDDGGEAVLQILLPGSIREEVLTAVHQQHGHQGVDRTLDLLRQRCYWPGMSAEVAEWCSQCERCQVAKVTRPAARAPMGHLLASKPNEILAMDFSV-LEPTTSGIENVLVITDIFSKYTMAVATRDQRAATVAQVLVTEWFSKFGVPARIHSDQGRSFESALIQQLCDLYAVEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPVSRKRDWNVCLPQLLYSYNTTPHHSTGESPFFLMFGQE 1122
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000029819.1 (pep primary_assembly:ASM223467v1:24:6358775:6362914:-1 gene:ENSORLG00000022361.1 transcript:ENSORLT00000029819.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 460.685 bits (1184), Expect = 3.420e-138 Identity = 265/822 (32.24%), Postives = 432/822 (52.55%), Query Frame = 1 Query: 580 SEDKIINNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALC----GSKQKKLM-------WTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHE---LGYCITRKELLSIFYFTGH-FKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECE-----------TCV--QCQMIHENPKMGKLKTRLLTLMTDNIENI----------------WQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNN---------------KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 E + + L+ + +F H+ D+G T L+ HEI L +P+ RR P +E+I +L+ +I E +SP+ SP+V ++KK+ +R+C+DYR LN+ T + FP+P +E LD L GA++FST+DL + Y+QV + +A + KTAF T + +NRMPFG+ AP+TFQRLM + GE ++YLDDI++FS T+ +H +E V ++++L LK+ AKC F + +V +LGH+I + G+ TD K+E + N+E P V LR F+G A+YYR+F+E + K + L L G+K +K WT+EC+ SF+ LK KLT+TPVL + DFS+PFIL+ DAS +GAVLSQ+ GK R IAY SR + E + Y R E L++ + F+ YL G+K I+ TD+ ++++ K + Q W L+ D+EI+YR G ++ NADALSR+ +C+ Q + + +G + ++ L + ++ W++ ++ + +S P + N ++ +I +P + E + H++ H G ++ + + + CE CQ KV + + SK E + +DF L+ G +L I D SK+ A + Q TV ++L EW K+G P I+ D+G+SFES L++ + + +E + ++PYH NGQ ER RT+ D ++ TL R + W LP++ + N+T + ++P ++FG++ Sbjct: 307 GEQEKVRALLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDGG-LRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFILEVDASNGGLGAVLSQEQEGKVRPIAYASRGLRPTERNPVNYSSMRLEFLALKWAVAEKFREYLLGQKCIVYTDNNPLSYLSTAK--LGAMEQRWAAQLAAFDLEIRYRSGRSNRNADALSRQHFPDMQAWRDVLPGSCLPMSLQQVQQTETVGTTQATMVALPHHSPSDMASLQGADPVLKEFLPFWERQTRPSPEERRQLS-SPTLALLRQWNRLVEQGGVLYRRVFRDDGGEAVLQILLPGSIREEVLTAVHQQHGHQGVDRTLDLLRQRCYWPGMSAEVAEWCSQCERCQVAKVTRPAARAPMGHLLASKPNEILAMDFSV-LEPTTSGIENVLVITDIFSKYTMAVATRDQRAATVAQVLVTEWFSKFGVPARIHSDQGRSFESALIQQLCDLYAVEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPVSRKRDWNVCLPQLLYSYNTTPHHSTGESPFFLMFGQE 1122
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000032171.1 (pep primary_assembly:ASM223467v1:18:2114932:2117958:1 gene:ENSORLG00000025397.1 transcript:ENSORLT00000032171.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 450.284 bits (1157), Expect = 1.245e-137 Identity = 272/861 (31.59%), Postives = 445/861 (51.68%), Query Frame = 1 Query: 472 LIGGIDFLERFGMQLQIENRTDEI-NTIMENSFKNHISEDKI-INNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCG------SKQKKLM-----WTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHE---LGYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETC------------------VQCQMIHENPKMGKLKTRLLTLMTDNIENI-------------WQ----KNSKEIENI-KENISLMPDKTFYKYVNG-----VIMTNNN----KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 L GI + R + I+ +D I I + +ED+ L+ + +F H+ D+G T L+ HEI L +P+ RR P E ++++I ++L G+I E SP+ SP+V +KK+ S +R+C+DYR LN+ T R FP+P DE LD L GA++F+T+DL + Y QV + + + KTAF T + +NRMPFG+ AP TFQRLM + G+ ++YLDDI++FS T++EH +E V +++ L++ KC F ++EV++LGH+I + G+ TD KIE + ++ P V LR FLG A+YYR+F+E + + + L L G S+++K WT EC+ +F LK KLTS PVL + DF+ PF L+ DAS + +GAV Q+ GG R IAY SR + E Y + E L++ + T F+ YL G ++ TD+ ++++ K + Q W+ L+ D EI+YR G + NADALSR + VQ Q + + +M +L T ++++ W+ N E E + K ++L+ V+G V+M ++ ++ +PE E + + H+ H G + + + + + + Q+CE CQ K ++ + S+ E + +DF L+ + G +L + D SK+ + Q TV ++L EW K+G P ++ D+G+SFES+L++ + IE + ++PYH + NGQ ER RT+ + ++ L+ R + W LP+V F N+T +T ++P +FG++ Sbjct: 143 LPAGITEVPRPAATVNIQAASDVILEQIDALPLETLPAEDRGKAQALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVLARKKDGS-LRMCVDYRQLNSKTRRDAFPLPRIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCTPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERLELVLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLVGELDGTKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFFLEVDASHNGLGAVFPQEQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK--LGEMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDQRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPDSGQEVFQLLLPEILIPEVLEQVHQHHGHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIASRPNELVAMDFTI-LEPSRTGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLCGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLR-ALQVTRKRDWHSCLPQVTFCYNTTPHQTTGESPFFFMFGQQ 998
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000036827.1 (pep primary_assembly:ASM223467v1:16:28613823:28617539:1 gene:ENSORLG00000023550.1 transcript:ENSORLT00000036827.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 453.751 bits (1166), Expect = 7.984e-137 Identity = 279/903 (30.90%), Postives = 448/903 (49.61%), Query Frame = 1 Query: 625 IFMKHKWDVGKTELLKHEILTKGS-PIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKEC--ETCVQCQ---------MIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLM-----PD-----------KTFYKYVNGVIMTNN--NKIWI-PEENKSEFIIEYHKKL-------CHAGANKVKMYVS-------NNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTI------------RKTPAEMVFGKKIYS-------EWFSEI--------------VEEEKTNQPTN-------REFQIGDCVLIKVNVRNKG-----DNRYMGPGVITKKIHDRSYEIKLENGS 3063 IF + +VG T L+ HEI T + PI PRR P+ + I+EML+ GII SPW S +V VKKK +R C+DYR LN +T++ +P+P DE LD++ G+ +FS++DL + Y+QV L A++ KTAF T + F + FG+ APATF+RLM VL + +VYLDDIL+ + ++ KV Q+I A LK+ P KC F R+E++FLGH IG +GI T E K++ ++++ P ++ L+ FLGLA+YYR+F+ ++ + L L K +WT ECE +F +LK LT++P+L PD PFILDTDAS +GAVLSQ ERV+AY S+ ++K E YC+TR+ELL++ GHF++YL G F +RTDH A+ ++M T K Q W+ L+ +++R G H NADA+SR+ C C C+ E G+ + L+ W+ + ++ +++ + + P+ K ++ + + + + + W P + + + + L CH A VS F L + + + + C+ C K +++ E+ + E + VD GP +G R++L +D+ +K+ +A+ Q+ TV L E ++GA +I+ D+G++FES + E + ++P H ++G +ER RT+ + I L W + LP V S Q + +TPAEM FGK + E+ ++ +E+ Q N ++F+ GD V + R KG D +++GP + +K+ + Y ++L G Sbjct: 247 IFALSEDEVGLTHLVHHEIDTGDARPIKTRPRRLPLAHQVAADSAIEEMLRGGIIEPSDSPWASGVVMVKKKKGPKMRFCVDYRPLNGVTKKDSYPLPRIDESLDLVSGSSWFSSLDLRSGYWQVPLSPAARPKTAFCTGRGLWQFRVLSFGLCNAPATFERLMEKVLASIPRQECLVYLDDILVHGGSFKAALESLRKVLQRIAAAGLKLHPDKCCFMRRELEFLGHKIGGEGISTLEEKVQAVRDWPTPTTLRDLKSFLGLASYYRRFVRGFSCIAAPLFHL-QRKDCDFVWTQECEQAFSSLKKALTNSPILTPPDPKLPFILDTDASDVGMGAVLSQMGSAGERVVAYFSKTLSKAERRYCVTRRELLAVVKAIGHFRYYLCGLPFTVRTDHSALQWLM-TFKEPEGQIARWLEELASFSFTVEHRPGSRHANADAMSRRPCALAGCQYCEKREAREAVISREEQSHTGESSWPVCRLVQGVDSTEWRAHQEQDVDLQPVLQWVEAGRKPEWGEVAGCSPGSKGLFEKFDALRLKDGVLQRAWKEPATGEERWQVVVPRTLRNSVLQGCHGAAGSGHFGVSKTLRRIRQGFYWGQLRRDVEDFCRRCDICTAHKGPPDRSRAELQQLAAGAPMERVAVDIMGPFPRTNRGNRFVLVAMDYFTKWPEAYAIPDQEAVTVADALVEGMFSRFGAAEVIHSDQGRNFESAVFSAMCERLGMRKTRTTPLHPQSDGLVERFNRTLVKQLAI-LTSAHQSDWDEHLPLVLMAYRSAVQDSTLCTPALLMLGRELRTPAEMSFGKPPDALGAPPGPEYARKLQDRMDTAHAFARNQLEKAGIRQKRNYDLRAKGKDFKAGDLVWVYNPKRKKGRCPKLDCQWVGPCEVLEKLGEVVYRVELPPGG 1146
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000041674.1 (pep primary_assembly:ASM223467v1:5:30088905:30092924:1 gene:ENSORLG00000022054.1 transcript:ENSORLT00000041674.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 453.751 bits (1166), Expect = 6.810e-136 Identity = 274/861 (31.82%), Postives = 447/861 (51.92%), Query Frame = 1 Query: 472 LIGGIDFLERFGMQLQIENRTDEI-NTIMENSFKNHISEDKI-INNLISTFDGIFMKHKWDVGKTELLKHEI-LTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCG------SKQKKLM-----WTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHE---LGYCITRKELLSI-FYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETC------------------VQCQMIHENPKMGKLKTRLLTLMTDNIENI-------------WQ----KNSKEIENI-KENISLMPDKTFYKYVNG-----VIMTNNN----KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKK 2865 L GI + R + I+ +D I I + +ED+ L+ + +F H+ D+G T L+ HEI L +P+ RR P E ++++I ++L G+I E SP+ SP+V +KK+ S +R+C+DYR LN+ T R FP+P DE LD L GA++F+T+DL + Y QV + + + KTAF + +NRMPFG+ AP TFQRLM + G+ ++YLDDI++FS T++EH +E V +++ L++ KC F ++EV++LGH+I + G+ TD KIE + ++ P V LR FLG A+YYR+F+E + + + L L G S+++K WT EC+ +F LK KLTS PVL + DF+ PFIL+ DAS + +GAVLSQ+ GG R IAY SR + E Y + E L++ + T F+ YL G ++ TD+ ++++ K + Q W+ L+ D EI+YR G + NADALSR + VQ Q + + +M +L T ++++ W+ N E E + K ++L+ V+G V+M ++ ++ +PE E + + H+ H G + + + + + + Q+CE CQ K ++ + S+ E + +DF L+ + G +L + D SK+ + Q TV ++L EW K+G P ++ D+G+SFES+L++ + IE + ++PYH + NGQ ER RT+ + ++ L R + W LP+V F N+T +T ++P ++FG++ Sbjct: 235 LPAGITEVPRPAATVNIQAASDVILEQIDALPLETLPAEDRGKAQALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVLARKKDGS-LRMCVDYRQLNSKTRRDAFPLPRIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCIPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERLELVLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLVGELDGTKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFILEVDASHNGLGAVLSQEQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK--LGAMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDQRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPDSGQEVFQLLLPEILIPEVLEQVHQHHGHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIASRPNELVAMDFTI-LEPSRTGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLCGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLR-ALPVTRKRDWHSCLPQVTFCYNTTPHQTTGESPFFLMFGQQ 1090
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000029259.1 (SMESG000029259.1) HSP 1 Score: 1024.62 bits (2648), Expect = 0.000e+0 Identity = 534/1036 (51.54%), Postives = 720/1036 (69.50%), Query Frame = 1 Query: 109 CMDEVFKDPPLTSNELNVLN-RDKRNDIIVYDKMQGRPSVTVMINNVKLVCLLDTGAKISVIDYNIFKKLGNLNMTTSNLKLRCANDSPIEICGKTLLNXXXXXXXXXXXXEFVVAKDINPKLIGGIDFLERFGMQLQI-----ENRTDEINTIM---------ENSFKNHISEDKIINN--LISTFDG---IFMKHKWDVGKTELLKHEILTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKD-GGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLMTDNIENIWQKNSKEIENIKENISLMPDKTFYKYVNGVIMTNNNKIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANGQIERQFRTIRDAIQITLKDKRHKSWVDILPEVQFMLNSTFQKTIRKTPAEMVFGKKI-YSEWFS------EIVE---EEKTNQP----TNREFQIGDCVLIKVNVRNKGDNRYMGPGVITKKIHDRSYEIKLENGSSVTRNIEWLKVFKKGG 3111 C++E+ +D + E N+L+ ++++ I Y+ MQGRPS T+ I K+ CLLDTGA+I+V+ ++ +L N+ + + LRCAN+S +E GK LN+ V S + V F++ K++ P++IGG++ FG++L+ E R+D I I E ++ I K+ N L+ F +FM KWD+G T L+KH+I+TKG PI+I PRRQPI+L +KIEE I+ + GII +C SPWN+PLVCV KK DIR+CLD+R LN ITER FP+PN DE+LDIL G+++FS+IDLGNAYYQV+LD S+ KTAFSTK Q+ FNRMPFGIAAAP TFQ LM VL +L +G +VYLDDILIF+KT +HY+ KV KI A L+++P KCQ RKEVKFLGHII +DGI+TD +KIE I++F++PKCVK+LR FLG+ NYYR+FI++Y K ++ LE++CG +K+ WT+ CE +F +K L + PVL FPDF K FILDTDASFD IGAVLSQKD G E VIAYGS AM+ HE GYCITRKELL+I+YF HF HYLYGK+F+LRTDHKAITFM+ TKK IT QFQTWIN+LS LD++++YRKG +H NAD LSRK C TCVQC M HE+ K GK+KTR+LT+ + N WQ ++ E++ IK + K + N ++T KIWIP +N+ I E H LCHAGA KV Y+ NN DM++L ++ V+++CE CQK K TTKTKEE ++ FE IY+D CGPL+ ++YI GIIDH+SK+ISL A+ QDE+T+ L +WI+K+GAP+ ++ D GK+FE++ +K+ A+ IE+ +SSPYHH+ NG IERQFRTIR+ I +L + K+W DI+PE+++ LN+T QKT +PAE++FG+KI +W+S E +E E+KT +P T R F++ D VLIK +RNK D R+ GP + KKIH+RSY +K +NG V RN+E +K FKKGG Sbjct: 2517 CINEIVED----TREQNILSVEEQKSPAITYNIMQGRPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGK--LNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKCILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIME--NNTVLTKQGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCQKMKTITTKTKEETQTIKSTEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIKYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGKMVVRNVEKIKHFKKGG 3544 HSP 2 Score: 85.5001 bits (210), Expect = 3.404e-16 Identity = 84/325 (25.85%), Postives = 128/325 (39.38%), Query Frame = 3 Query: 3264 FDNKRVLVMDSINTRSSVANMATTIANFIKP---PETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNIXXXXXXXXXXXXXXXXXXXXDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNT----REFHSRDHIRTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCH 4217 +K +V +I ++ +NMAT + + PE + D+E FI E +RFFE+T + + V L ++YE E ++LR AF + SLIDDL EALNY Q EV+K+++M+DLK+ +++KE +K+ ++V NK + V RSIR ++D G RE N W+P R K + HS + +C+AC EGH R EC I+C C GH + +C+ Sbjct: 2131 IGDKLWVVSVNILAYTAASNMATIPTDLLIGRLLPEKFHRGDDLELFIKECQRFFEITKTPVKTQMVLVITLLDRTLIEEYEAA-EGKTVEQKLRAAFHRPTSLIDDLREALNYEQ-----------------------------------------EVRKEIEMKDLKTAEQIKETIKKIEKV--------------NKVIEQVNTV-----------RSIRPTTGGRTYRDVVQV---------GATKRE-----INEWKPETRVKMIECWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKERECY 2374
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000023258.1 (SMESG000023258.1) HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0 Identity = 347/352 (98.58%), Postives = 348/352 (98.86%), Query Frame = 3 Query: 3282 LVMDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNIXXXXXXXXXXXXXXXXXXXXDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNTREFHSRDHIRTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCHELFPGRRRKFHKSVAAFGDEDPEADFEYPNGNAPQHEEVI 4337 LVMDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNILKHKLDEEELKKFLLFNSLEDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNTRE HSRDH+RTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCHELFPGR RKFHKSVAAFGDEDPEAD EYPNGNAP HEEVI Sbjct: 1035 LVMDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNILKHKLDEEELKKFLLFNSLEDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNTRESHSRDHVRTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCHELFPGRSRKFHKSVAAFGDEDPEADCEYPNGNAPPHEEVI 1386
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000023258.1 (SMESG000023258.1) HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0 Identity = 347/352 (98.58%), Postives = 348/352 (98.86%), Query Frame = 3 Query: 3282 LVMDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNIXXXXXXXXXXXXXXXXXXXXDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNTREFHSRDHIRTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCHELFPGRRRKFHKSVAAFGDEDPEADFEYPNGNAPQHEEVI 4337 LVMDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNILKHKLDEEELKKFLLFNSLEDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNTRE HSRDH+RTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCHELFPGR RKFHKSVAAFGDEDPEAD EYPNGNAP HEEVI Sbjct: 1043 LVMDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVDEYRSKFVKAFLSINSTKKYELTNETLHYTERLRNAFSKNRSLIDDLNEALNYRQGNEAAEEFCSKIEKLAKNILKHKLDEEELKKFLLFNSLEDKEVKKDLKMQDLKSFDEMKERLKRHDQVSKEINVFHADVASMNKTQRYADAVKKSLPRYNYDNRSIREREANPRFKDEYTREPQHNPRFKGDLTREHRYAISNGWRPMNRSKPYNTRESHSRDHVRTNQILRCWACHEEGHRRSECSNIQCAHCKRSGHFKHQCHELFPGRSRKFHKSVAAFGDEDPEADCEYPNGNAPPHEEVI 1394
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000081257.1 (SMESG000081257.1) HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0 Identity = 321/871 (36.85%), Postives = 496/871 (56.95%), Query Frame = 1 Query: 190 IVYDKMQGRPSVTVMINNVKLVCLLDTGAKISVIDYNIFKKLGNLNMTTSNLKLR--CANDSPIEICGKTLLNXXXXXXXXXXXXEF--VVAKDINPKLIGGIDFLERFGMQLQ---------IENRTDEINTIMENSFKNHISEDKIINNLISTFDGIFMKHKWDVGKTELLKHEILTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKDGGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHLSGLDMEIQYRKGDNHNNADALSRKECETCVQCQMIHENPKMGKLKTRLLTLM--TDNIENIWQKNSKE-------IENIKENISLMPDKT----FYKYV------NGVIMTNNN---KIWIPEENKSEFIIEYHKKLCHAGANKVKMYVSNNFDMKDLEQSIRNVVQSCENCQKRKVDTTKTKEEIICKSDSKLFETIYVDFCGPLQLAMKGERYILGIIDHHSKFISLHAVKSQDEKTVVRLLKEEWIMKYGAPRIINCDRGKSFESKLMKDFAEFHNIEINYSSPYHHSANG 2697 +++ K R + IN + L ++GA ISV+ ++ +G+ + S + L +N+ K L +VK+ + K E ++ + I+P IGG+D ++ FGM+L+ + R + + + + ++ + LIS F IFM ++D+G T+++ HE+ T G PI+ NPR QP+HL K+EE +Q +L+ G++ +C SPWN+PLV V K + S +RICLD+R LN++TE+ FP+P+ LLD L +K F +IDLG AYY VEL++ S++KTAFSTK Q+ FNR+PFG++ APATFQ+LM+ +L L + G +VYLDDILI+ + H + +VF +I+ + LK++P KC F + + F+GH + E GI+T++ KI I+N PK LR FLGL YYR+FI+NY+ + L A K ++WT+EC F NLK L P+L++P + FI+DTD SF+ IG + KHE+GYC+TRKELL + F HF+ YLYG++F+ RTDHKA+TFM TKK I+PQFQTW+ + S D +QYRKG+ H NA SR C QM H++ K K +TR + + + NI I ++ E I ++ N + + KT +KY+ + V+M N + + +P+ + +H +LCH G NK Y+ + F + + Q I + C+ C RK+D +TKE ++ ++ + E I VD + ++Y++ IID SK +SL QDE T++ ++ WI ++G P I DR + FE + +D+ E I+ +SSPY H +NG Sbjct: 275 VMFKKDDDRKWSIMEINGFHVEMLWNSGASISVMSEKCWRLIGSPILMDSRILLSEVFSNEDK-----KPLGSVKIVAKWNKKFRELNVIIVRKIHPNFIGGVDTMKIFGMELKEVNNIESSLVNKRFTDSDRLKNTLLTLKLDKNSELGTLISQFSNIFMASRFDLGHTKVITHELKTSGPPILQNPRGQPMHLEAKVEELVQNLLEAGVVRKCQSPWNTPLVIVGKPDGS-VRICLDFRLLNSVTEKFSFPMPDMQLLLDCLGKSKIFYSIDLGQAYYLVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDDILIYGENQETHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFIGHTVSEKGIQTNKRKISEIENATEPKSTTELRSFLGLTTYYRRFIKNYSMIAAPLYAATTGCDKMIVWTEECRKRFINLKKLLCEAPILEYPRADRLFIIDTDDSFEAIG-------------------HLTKHEIGYCVTRKELLVLHEFIVHFRQYLYGRRFVARTDHKALTFMNTTKKPISPQFQTWMANFSEYDFALQYRKGNEHGNAGGWSRLNNTICSHYQMEHKDAKKAKCRTRCINSLQGSSNIMKIIKQKQNEDKVTSQIISHLNGNEAHISYKTISSSIFKYLKILQIQDNVLMINTDGKLAVVVPDSYVKSLVNYFHIELCHLGINKTLFYLKDFFFLPSMNQIITECINKCKICASRKIDQGRTKEILLPRTGERFLEQIVVDI--DYMETKESKKYMIVIIDCFSKLVSL----PQDEATILNVILNNWIYRFGRPESILTDRERIFEGSMFRDWMEKFGIKQEFSSPYQHQSNG 1114
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000016546.1 (SMESG000016546.1) HSP 1 Score: 413.305 bits (1061), Expect = 1.576e-129 Identity = 211/431 (48.96%), Postives = 277/431 (64.27%), Query Frame = 1 Query: 592 IINNLISTFDGIFMKHKWDVGKTELLKHEILTKGSPIVINPRRQPIHLIEKIEENIQEMLKYGIISECTSPWNSPLVCVKKKNSSDIRICLDYRALNNITERPIFPIPNTDELLDILDGAKFFSTIDLGNAYYQVELDDASKLKTAFSTKSKQYYFNRMPFGIAAAPATFQRLMNLVLGELNWNGTIVYLDDILIFSKTLNEHYSTIEKVFQKIKLANLKISPAKCQFKRKEVKFLGHIIGEDGIRTDESKIETIKNFERPKCVKSLRGFLGLANYYRKFIENYTKDSKVLEALCGSKQKKLMWTDECETSFKNLKLKLTSTPVLKFPDFSKPFILDTDASFDRIGAVLSQKD-GGKERVIAYGSRAMNKHELGYCITRKELLSIFYFTGHFKHYLYGKKFILRTDHKAITFMMKTKKAITPQFQTWINHL 1881 ++ +I +FM +KW++G T LLKH+I+T+GS I I PRRQPIHL KIEE IQ + K GII + LN +T+R +P+ N E+LD +G K F++IDLGNAYYQVEL++ SK KTAFST + QY FNRMPFGIA P T Q LM VLG N NGT+VYL+DILIF+ T ++Y+ + V ++I + E IK+F++P+C+K+L+ F G+ NYYR+FI++Y K ++ LE LCG KL+W + CE +F+++K LT +PVL +PDF++ FI+DTD+SFD IG VLSQKD G E+VIAYGS AM+ HE GYCI RKELL+I+YF HF H+LYGK+F LRTD KAITFM+ TKK IT QF+TWINHL Sbjct: 143 VLAEIIKNNQNVFMANKWEIGCTALLKHKIVTRGSLINIKPRRQPIHLEPKIEEAIQNLFKNGII----------------------------KNLNLVTDRQAYPMQNIAEILDRFEGEKHFNSIDLGNAYYQVELEEKSKEKTAFSTTTGQYCFNRMPFGIATGPGTSQELMRKVLG--NINGTVVYLNDILIFTATKEQYYAVLNDVIERI-----------------------------------GRPEAIKSFQKPECIKNLKSFPGICNYYRRFIKDYAKKTRTLEELCGKYNVKLIWAENCEKAFEDMKKALTESPVLGYPDFTRDFIIDTDSSFDTIGDVLSQKDNNGYEKVIAYGSHAMSTHEKGYCIKRKELLAIYYFCQHFNHHLYGKRFTLRTDLKAITFMLSTKKPITAQFKTWINHL 508 The following BLAST results are available for this feature:
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 3
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004301 ID=SMED30004301|Name=Transposon Ty3-I Gag-Pol polyprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=4339bpback to top protein sequence of SMED30004301-orf-1 >SMED30004301-orf-1 ID=SMED30004301-orf-1|Name=SMED30004301-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1039bp MSKGCMILNDCDSLNDNCCDGIFDYRNYINIYINKFCMDEVFKDPPLTSNback to top protein sequence of SMED30004301-orf-2 >SMED30004301-orf-2 ID=SMED30004301-orf-2|Name=SMED30004301-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=350bp MDSINTRSSVANMATTIANFIKPPETYDMDSDVEDFILETERFFEMTNIVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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