SMED30004178

Overview


Name	SMED30004178
Smed ID	SMED30004178
Length (bp)	2596

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30004178 (SMED30004178) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004178 (SMED30004178) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004178 (SMED30004178) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004178 (SMED30004178) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004178

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pharynx	SMED30004178	SMESG000025475.1	dd_Smed_v4_2550_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30004178	SMESG000025475.1	dd_Smed_v4_2550_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30004178	SMESG000025475.1	dd_Smed_v4_2550_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30004178	SMESG000025475.1	dd_Smed_v4_2550_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30004178	SMESG000025475.1	dd_Smed_v4_2550_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30004178 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000093:105905..109459 -	12712

Homology

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BLAST of SMED30004178 vs. Ensembl Human
Match: EIF3C (eukaryotic translation initiation factor 3 subunit C [Source:HGNC Symbol;Acc:HGNC:3279])

HSP 1 Score: 405.216 bits (1040), Expect = 6.878e-127
Identity = 220/572 (38.46%), Postives = 345/572 (60.31%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------------------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+++LQ L+ +      G G+ VKI  ++++ L  Y  + +   M  E W + L+   +++DIL  NPN I +  + +E+SE       P  V GCI+  +E +++E+TKI+   D  S    EY E L+ E ++ ++   V  YL +K    ++ CR+Y+ ++ H YY+FD     ++  P                  S   M +L  +I  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML ++ +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT    I ++KM   VW LF   ++++T++V KI+ ES++ +L + ++V++S+S++ L +++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  +  Q  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  306 KMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWGKCLDCINELMDILFANPN-IFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVEHLKDEAQVCAIIERVQRYLEEKG-TTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 871

HSP 2 Score: 99.3673 bits (246), Expect = 1.340e-20
Identity = 62/161 (38.51%), Postives = 105/161 (65.22%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P+  +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N        ++KNN+K+L+ LRQKI+KYN+DFE+ I  +++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLN-------EMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPE 154

[Close]

BLAST of SMED30004178 vs. Ensembl Human
Match: EIF3C (eukaryotic translation initiation factor 3 subunit C [Source:HGNC Symbol;Acc:HGNC:3279])

HSP 1 Score: 404.831 bits (1039), Expect = 9.898e-127
Identity = 220/572 (38.46%), Postives = 345/572 (60.31%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------------------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+++LQ L+ +      G G+ VKI  ++++ L  Y  + +   M  E W + L+   +++DIL  NPN I +  + +E+SE       P  V GCI+  +E +++E+TKI+   D  S    EY E L+ E ++ ++   V  YL +K    ++ CR+Y+ ++ H YY+FD     ++  P                  S   M +L  +I  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML ++ +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT    I ++KM   VW LF   ++++T++V KI+ ES++ +L + ++V++S+S++ L +++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  +  Q  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  316 KMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWGKCLDCINELMDILFANPN-IFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVEHLKDEAQVCAIIERVQRYLEEKG-TTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881

HSP 2 Score: 102.064 bits (253), Expect = 2.113e-21
Identity = 61/164 (37.20%), Postives = 103/164 (62.80%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P+  +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE+ I  +++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPE 164

[Close]

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------------------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+++LQ L+ +      G G+ VKI  ++++ L  Y  + +   M  E W + L+   +++DIL  NPN I +  + +E+SE       P  V GCI+  +E +++E+TKI+   D  S    EY E L+ E ++ ++   V  YL +K    ++ CR+Y+ ++ H YY+FD     ++  P                  S   M +L  +I  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML ++ +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT    I ++KM   VW LF   ++++T++V KI+ ES++ +L + ++V++S+S++ L +++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  +  Q  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  316 KMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWGKCLDCINELMDILFANPN-IFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVEHLKDEAQVCAIIERVQRYLEEKG-TTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881

HSP 2 Score: 102.064 bits (253), Expect = 2.113e-21
Identity = 61/164 (37.20%), Postives = 103/164 (62.80%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P+  +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE+ I  +++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPE 164

[Close]

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------------------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+++LQ L+ +      G G+ VKI  ++++ L  Y  + +   M  E W + L+   +++DIL  NPN I +  + +E+SE       P  V GCI+  +E +++E+TKI+   D  S    EY E L+ E ++ ++   V  YL +K    ++ CR+Y+ ++ H YY+FD     ++  P                  S   M +L  +I  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML ++ +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT    I ++KM   VW LF   ++++T++V KI+ ES++ +L + ++V++S+S++ L +++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  +  Q  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  316 KMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWGKCLDCINELMDILFANPN-IFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVEHLKDEAQVCAIIERVQRYLEEKG-TTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881

HSP 2 Score: 102.064 bits (253), Expect = 2.113e-21
Identity = 61/164 (37.20%), Postives = 103/164 (62.80%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P+  +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE+ I  +++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPE 164

[Close]

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------------------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+++LQ L+ +      G G+ VKI  ++++ L  Y  + +   M  E W + L+   +++DIL  NPN I +  + +E+SE       P  V GCI+  +E +++E+TKI+   D  S    EY E L+ E ++ ++   V  YL +K    ++ CR+Y+ ++ H YY+FD     ++  P                  S   M +L  +I  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML ++ +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT    I ++KM   VW LF   ++++T++V KI+ ES++ +L + ++V++S+S++ L +++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  +  Q  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  316 KMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWGKCLDCINELMDILFANPN-IFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVEHLKDEAQVCAIIERVQRYLEEKG-TTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881

HSP 2 Score: 102.064 bits (253), Expect = 2.113e-21
Identity = 61/164 (37.20%), Postives = 103/164 (62.80%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P+  +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE+ I  +++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPE 164

[Close]

BLAST of SMED30004178 vs. Ensembl Celegans
Match: eif-3.C (Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O02328])

HSP 1 Score: 401.749 bits (1031), Expect = 4.452e-126
Identity = 221/562 (39.32%), Postives = 342/562 (60.85%), Query Frame = -2

Query:   79 WTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDIL-NRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKN----YGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQ--GTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 1743
            WT V+      V  F   EE+T + ++ K+   +  R  +   R   V  L++L+++   +  G+G+ VKI   ++S L +     S+  M  E +   L+    ++D+L   +   +S+  ++ +++ K D   Y + G I+  ++ L+ E  KIL   D  S+   +Y EKL+ E  + SL     +Y+  +N    +   + C+VYM ++EH YY++      + E  + K M  L   I   D+  RLR RA+LCH+YYLA+HD W  ARD++ MS +   +D +D  TQIL+NR   QLGLCAFR G I+EAHQ L+E+Q + R KE+LAQ  GTR +   A  E++ R +    PYH HINV+++EC YL+ +ML ++ H    + + RR M+SR+FHY LK S++ +L G P+N +EHVVAASKA+ NGDWK   D+I +DKM + VW LF N E +K ++V +I+ ES++ +LL+ + V+ ++SLK L +++ELS+  VH +ISKMI+  +L A+LDEP++CLIMHR   S LQ+ AL L+DK+  LAE NE++
Sbjct:  281 WTPVNR--EKSVVHFDPKEEVTHDVMIKKLNEVMSARGKRTTDRNQHVANLRKLLEVSEEKELGLGINVKISFCIISALFELNAKISDH-MEYETFMTTLQTVNSLLDLLIGTDRVKLSVTYAEEDENLKDDTQEYRIQGSILIAVQRLDGELAKILQNADCHSN---DYIEKLKAEKDMCSLIEKAEKYVELRNDSGIFDKHEVCKVYMMRIEHAYYKYQD----QNEEDAGKLMDYLCNKIYTLDDEKRLRQRAMLCHVYYLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVGTRQHEKTAEQEKIDRSRQV--PYHMHINVELMECVYLICSMLLEIPHMASCEFEMRRRMLSRSFHYQLKQSEKASLTGPPENTREHVVAASKAMLNGDWKKCQDYIVNDKMNQKVWNLFHNAETVKGMVVRRIQEESLRTYLLTYSTVYATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSRLQMLALNLSDKLQTLAENNEQI 830

HSP 2 Score: 75.485 bits (184), Expect = 1.147e-13
Identity = 57/170 (33.53%), Postives = 98/170 (57.65%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPI----AFDD-----SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVL--KFYIRVIAELEEFTNTSWXXXXXXXXXXXXXXXX---LRQKIKKYNKDFEAQ--IADFRENSD 2514
            MSRFFHA       + S E+ V ++ +     F D     +   EDE+R+V++ ++KK+++L+GI+K  ++ K+ +D+ ++L  F+ L K+Y+K+    +   V   +FYIR + E+E++ N  W +K   S  +  +  A   LRQK+KKY KD + Q  + D+R N D
Sbjct:    1 MSRFFHAKEDSDSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRDAKSNKDLNRLLTGFDSLAKAYDKSKTVFQRQNVANPRFYIRSLVEIEDYVNKLWDDKDAKSALSKNNAKALPPLRQKLKKYIKDQQLQDLVTDYRVNPD 170

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Query:   79 WTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDIL-NRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKN----YGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQ--GTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 1743
            WT V+      V  F   EE+T + ++ K+   +  R  +   R   V  L++L+++   +  G+G+ VKI   ++S L +     S+  M  E +   L+    ++D+L   +   +S+  ++ +++ K D   Y + G I+  ++ L+ E  KIL   D  S+   +Y EKL+ E  + SL     +Y+  +N    +   + C+VYM ++EH YY++      + E  + K M  L   I   D+  RLR RA+LCH+YYLA+HD W  ARD++ MS +   +D +D  TQIL+NR   QLGLCAFR G I+EAHQ L+E+Q + R KE+LAQ  GTR +   A  E++ R +    PYH HINV+++EC YL+ +ML ++ H    + + RR M+SR+FHY LK S++ +L G P+N +EHVVAASKA+ NGDWK   D+I +DKM + VW LF N E +K ++V +I+ ES++ +LL+ + V+ ++SLK L +++ELS+  VH +ISKMI+  +L A+LDEP++CLIMHR   S LQ+ AL L+DK+  LAE NE++
Sbjct:  281 WTPVNR--EKSVVHFDPKEEVTHDVMIKKLNEVMSARGKRTTDRNQHVANLRKLLEVSEEKELGLGINVKISFCIISALFELNAKISDH-MEYETFMTTLQTVNSLLDLLIGTDRVKLSVTYAEEDENLKDDTQEYRIQGSILIAVQRLDGELAKILQNADCHSN---DYIEKLKAEKDMCSLIEKAEKYVELRNDSGIFDKHEVCKVYMMRIEHAYYKYQD----QNEEDAGKLMDYLCNKIYTLDDEKRLRQRAMLCHVYYLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVGTRQHEKTAEQEKIDRSRQV--PYHMHINVELMECVYLICSMLLEIPHMASCEFEMRRRMLSRSFHYQLKQSEKASLTGPPENTREHVVAASKAMLNGDWKKCQDYIVNDKMNQKVWNLFHNAETVKGMVVRRIQEESLRTYLLTYSTVYATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSRLQMLALNLSDKLQTLAENNEQI 830

HSP 2 Score: 75.485 bits (184), Expect = 1.147e-13
Identity = 57/170 (33.53%), Postives = 98/170 (57.65%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPI----AFDD-----SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVL--KFYIRVIAELEEFTNTSWXXXXXXXXXXXXXXXX---LRQKIKKYNKDFEAQ--IADFRENSD 2514
            MSRFFHA       + S E+ V ++ +     F D     +   EDE+R+V++ ++KK+++L+GI+K  ++ K+ +D+ ++L  F+ L K+Y+K+    +   V   +FYIR + E+E++ N  W +K   S  +  +  A   LRQK+KKY KD + Q  + D+R N D
Sbjct:    1 MSRFFHAKEDSDSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRDAKSNKDLNRLLTGFDSLAKAYDKSKTVFQRQNVANPRFYIRSLVEIEDYVNKLWDDKDAKSALSKNNAKALPPLRQKLKKYIKDQQLQDLVTDYRVNPD 170

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Query:   79 WTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDIL-NRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKN----YGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQ--GTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 1743
            WT V+      V  F   EE+T + ++ K+   +  R  +   R   V  L++L+++   +  G+G+ VKI   ++S L +     S+  M  E +   L+    ++D+L   +   +S+  ++ +++ K D   Y + G I+  ++ L+ E  KIL   D  S+   +Y EKL+ E  + SL     +Y+  +N    +   + C+VYM ++EH YY++      + E  + K M  L   I   D+  RLR RA+LCH+YYLA+HD W  ARD++ MS +   +D +D  TQIL+NR   QLGLCAFR G I+EAHQ L+E+Q + R KE+LAQ  GTR +   A  E++ R +    PYH HINV+++EC YL+ +ML ++ H    + + RR M+SR+FHY LK S++ +L G P+N +EHVVAASKA+ NGDWK   D+I +DKM + VW LF N E +K ++V +I+ ES++ +LL+ + V+ ++SLK L +++ELS+  VH +ISKMI+  +L A+LDEP++CLIMHR   S LQ+ AL L+DK+  LAE NE++
Sbjct:  281 WTPVNR--EKSVVHFDPKEEVTHDVMIKKLNEVMSARGKRTTDRNQHVANLRKLLEVSEEKELGLGINVKISFCIISALFELNAKISDH-MEYETFMTTLQTVNSLLDLLIGTDRVKLSVTYAEEDENLKDDTQEYRIQGSILIAVQRLDGELAKILQNADCHSN---DYIEKLKAEKDMCSLIEKAEKYVELRNDSGIFDKHEVCKVYMMRIEHAYYKYQD----QNEEDAGKLMDYLCNKIYTLDDEKRLRQRAMLCHVYYLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVGTRQHEKTAEQEKIDRSRQV--PYHMHINVELMECVYLICSMLLEIPHMASCEFEMRRRMLSRSFHYQLKQSEKASLTGPPENTREHVVAASKAMLNGDWKKCQDYIVNDKMNQKVWNLFHNAETVKGMVVRRIQEESLRTYLLTYSTVYATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSRLQMLALNLSDKLQTLAENNEQI 830

HSP 2 Score: 75.485 bits (184), Expect = 1.147e-13
Identity = 57/170 (33.53%), Postives = 98/170 (57.65%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPI----AFDD-----SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVL--KFYIRVIAELEEFTNTSWXXXXXXXXXXXXXXXX---LRQKIKKYNKDFEAQ--IADFRENSD 2514
            MSRFFHA       + S E+ V ++ +     F D     +   EDE+R+V++ ++KK+++L+GI+K  ++ K+ +D+ ++L  F+ L K+Y+K+    +   V   +FYIR + E+E++ N  W +K   S  +  +  A   LRQK+KKY KD + Q  + D+R N D
Sbjct:    1 MSRFFHAKEDSDSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRDAKSNKDLNRLLTGFDSLAKAYDKSKTVFQRQNVANPRFYIRSLVEIEDYVNKLWDDKDAKSALSKNNAKALPPLRQKLKKYIKDQQLQDLVTDYRVNPD 170

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BLAST of SMED30004178 vs. Ensembl Fly
Match: eIF3c (gene:FBgn0034258 transcript:FBtr0086836)

HSP 1 Score: 419.083 bits (1076), Expect = 1.922e-132
Identity = 226/575 (39.30%), Postives = 356/575 (61.91%), Query Frame = -2

Query:   55 WTTV---DMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKE--EIP-----SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1743
            W TV    +  +P  K+F  D EI    +L K+   +  R  K+  R+ Q+D+L +L D+      G  + VKI  +++S +  Y    S P M LE+W  +LE+   ++ +L  N  DI M  S  E+ E++   P+ V GC +  +E L+DE+ K+L  C   S+D    Y  +L+ E  ++    LV +Y  +    ++++CR+Y+R++EH+YY+FDP V  K+  E+P     S   M KL  FI  KD+TDR+RTRAIL HIY+ A+HD WF+ARD++ MS L ++ID AD +T+IL+NR+   LGLCAFR+G +K+AH  L +L  +G+ KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+  G+W+  A+ I + KM   VW LF   + ++ ++   IK ES++ +L + +NV+ S+S+  L ++YEL    VH +ISKMI++ +L ASLD+PS  + MHR+  S LQ  A++  DK++ L ++NEK+ D  +  +
Sbjct:  282 WETVVKGHVVEKP--KMFEKDAEIDVPLVLAKLLEIMSARGKKRTDRRLQIDLLFELRDISDQHNLGTAVSVKIHFNIISAIYDYNQKISEP-MKLEHWALLLEVMQSMMKLLLANA-DIIMSESVAEEHEEYATSPFYVRGCPLAAVERLDDEFVKLLKECDPHSND----YVSRLKDEVNVVKTIELVLQYFERSG-TNNERCRIYLRKIEHLYYKFDPEVLKKKRGELPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQGNVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEELMASLDDPSETVGMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNF 847

HSP 2 Score: 99.7525 bits (247), Expect = 5.256e-21
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = -2

Query: 2053 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2433
            AF  S + E+ +R+V+S +EK+YE+L  I+K ++NHK I+DI   L  FE+LT++Y+KA   +  E +G+  +FYIR +AELE+F N  W     +KNLSKNNSKSL  LRQK++KY KDFE  ++ FRE  D
Sbjct:   30 AFQFSDDEEEVKRVVRSTKEKRYENLTSIIKTIRNHKKIKDIPNTLSSFEDLTRAYQKALPVISKEENGITPRFYIRCLAELEDFINEVWEDREGRKNLSKNNSKSLGTLRQKVRKYIKDFEDDLSRFREAPD 162

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BLAST of SMED30004178 vs. Ensembl Fly
Match: eIF3c (gene:FBgn0034258 transcript:FBtr0340269)

HSP 1 Score: 419.083 bits (1076), Expect = 1.922e-132
Identity = 226/575 (39.30%), Postives = 356/575 (61.91%), Query Frame = -2

Query:   55 WTTV---DMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKE--EIP-----SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1743
            W TV    +  +P  K+F  D EI    +L K+   +  R  K+  R+ Q+D+L +L D+      G  + VKI  +++S +  Y    S P M LE+W  +LE+   ++ +L  N  DI M  S  E+ E++   P+ V GC +  +E L+DE+ K+L  C   S+D    Y  +L+ E  ++    LV +Y  +    ++++CR+Y+R++EH+YY+FDP V  K+  E+P     S   M KL  FI  KD+TDR+RTRAIL HIY+ A+HD WF+ARD++ MS L ++ID AD +T+IL+NR+   LGLCAFR+G +K+AH  L +L  +G+ KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+  G+W+  A+ I + KM   VW LF   + ++ ++   IK ES++ +L + +NV+ S+S+  L ++YEL    VH +ISKMI++ +L ASLD+PS  + MHR+  S LQ  A++  DK++ L ++NEK+ D  +  +
Sbjct:  282 WETVVKGHVVEKP--KMFEKDAEIDVPLVLAKLLEIMSARGKKRTDRRLQIDLLFELRDISDQHNLGTAVSVKIHFNIISAIYDYNQKISEP-MKLEHWALLLEVMQSMMKLLLANA-DIIMSESVAEEHEEYATSPFYVRGCPLAAVERLDDEFVKLLKECDPHSND----YVSRLKDEVNVVKTIELVLQYFERSG-TNNERCRIYLRKIEHLYYKFDPEVLKKKRGELPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQGNVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEELMASLDDPSETVGMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNF 847

HSP 2 Score: 99.7525 bits (247), Expect = 5.256e-21
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = -2

Query: 2053 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2433
            AF  S + E+ +R+V+S +EK+YE+L  I+K ++NHK I+DI   L  FE+LT++Y+KA   +  E +G+  +FYIR +AELE+F N  W     +KNLSKNNSKSL  LRQK++KY KDFE  ++ FRE  D
Sbjct:   30 AFQFSDDEEEVKRVVRSTKEKRYENLTSIIKTIRNHKKIKDIPNTLSSFEDLTRAYQKALPVISKEENGITPRFYIRCLAELEDFINEVWEDREGRKNLSKNNSKSLGTLRQKVRKYIKDFEDDLSRFREAPD 162

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BLAST of SMED30004178 vs. Ensembl Zebrafish
Match: eif3c (eukaryotic translation initiation factor 3, subunit C [Source:NCBI gene;Acc:334234])

HSP 1 Score: 406.371 bits (1043), Expect = 2.210e-127
Identity = 222/571 (38.88%), Postives = 348/571 (60.95%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ L+   +++DIL  N N+I +  +  EDSE       P+ V GCI+  +E +++E+TKI+   D  S    EY + L+ E ++  +   + +YL  K    ++ CRVY+R++ H YY+FD      ++G++ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  316 KMFAKGTEINTGVVVKKLSEILQARGKKGTDRAAQIELLHALAGIAAENNLGEGILVKIKFNIIASLYDYNPNLA-AFMKADMWKKCLDCIDELLDILFNN-NNIFIGENIAEDSENLAISDQPFRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGRVCGIIDRLLQYLETKG-STEEVCRVYLRRIMHTYYKFDYKAHRRSLGLQGETKSEQDQEESEGDDSAIIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPEAKCVREMLVRKIQEESLRTYLFTYSSVYDSISMETLSEMFELELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGGLVENNERVFDLKQGVY 880

HSP 2 Score: 101.679 bits (252), Expect = 1.522e-21
Identity = 52/126 (41.27%), Postives = 91/126 (72.22%), Query Frame = -2

Query: 2053 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+DI+K LE+FE+L +++ K+   ++ +GV KFYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE +IA ++EN +
Sbjct:   39 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAIKIRDISKCLEEFEQLCRAFVKSKTIVDKEGVPKFYIRLLADLEDYLNQLWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFETEIASYKENPE 164

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BLAST of SMED30004178 vs. Ensembl Xenopus
Match: tnip1 (TNFAIP3 interacting protein 1 [Source:Xenbase;Acc:XB-GENE-945173])

HSP 1 Score: 400.593 bits (1028), Expect = 4.496e-125
Identity = 219/574 (38.15%), Postives = 345/574 (60.10%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPN-----DISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+D+L  L  +      G G+ VKI  ++V+ L  Y  + +   M  + WK+ L+   D++DIL  N N      IS  S ++ ++++    P  V GCI+  +E +++E+TKI+   D  S    EY + L+ E ++  +     +YL +K    ++ CRVY+R++ H YY+FD       +   +E  S ++            M +L  +I  KD TDR+RT AILCHIY+ ALH+ WF+ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G I++AH AL ++Q SGR KE+L QG  +    E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT  + I ++KM   VW LF   E ++++++ KI+ ES++ +L + ++V++S+ +  L ++++L   +VH +ISKMI++ +L ASLD+P+  ++MH T  S LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  318 KMFAKGTEITPPIVVKKLNEILQARGKKGTDRAAQIDLLHLLAGIAEENNLGQGIAVKIKFNIVASLYDYNTNLAT-YMKADMWKKCLDSIHDLLDILFANSNMFIGEHISEDSENLSNTDQ----PLRVRGCILTLIERMDEEFTKIMQNTDPHSQ---EYVDNLKDEARVCEVIERAQKYLQEKG-STEEVCRVYLRRIMHTYYKFDYKAHQRQLSTGQESKSEQDQAENEAEDSAILMDRLCKYIYAKDRTDRIRTCAILCHIYHHALHNRWFQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIRDAHNALLDIQSSGRAKELLGQGLLMRTMQERNQEQEKIEKRRQIPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCKNFIINEKMNGKVWDLFPEAERVRSMLIRKIQEESLRTYLFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMASLDQPTQTVVMHGTEPSSLQNTALQLAEKLGNLVENNERIFDHKQGSY 882

HSP 2 Score: 100.908 bits (250), Expect = 4.602e-21
Identity = 53/133 (39.85%), Postives = 94/133 (70.68%), Query Frame = -2

Query: 2053 RPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2442
            +PI   D  + ED +R+V+SA++K++E+L  ++K ++N   I+D+TK LE+FE+L K++ KA   ++ +GV +FYIR++++LE++ N  W +K+   K N  +    + LRQK++KYN+DFEA IA +++N +
Sbjct:   34 QPIILSD--DEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMTKCLEEFEQLGKAFIKAKNIVDKEGVPRFYIRLLSDLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKLRKYNRDFEAPIAAYKQNPE 164

[Close]

BLAST of SMED30004178 vs. Ensembl Xenopus
Match: tnip1 (TNFAIP3 interacting protein 1 [Source:Xenbase;Acc:XB-GENE-945173])

HSP 1 Score: 396.356 bits (1017), Expect = 8.917e-124
Identity = 220/588 (37.41%), Postives = 346/588 (58.84%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPN-----DISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKE-----------------EIPSYKE--------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+D+L  L  +      G G+ VKI  ++V+ L  Y  + +   M  + WK+ L+   D++DIL  N N      IS  S ++ ++++    P  V GCI+  +E +++E+TKI+   D  S    EY + L+ E ++  +     +YL +K    ++ CRVY+R++ H YY+FD     ++                 EI S ++              M +L  +I  KD TDR+RT AILCHIY+ ALH+ WF+ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G I++AH AL ++Q SGR KE+L QG  +    E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT  + I ++KM   VW LF   E ++++++ KI+ ES++ +L + ++V++S+ +  L ++++L   +VH +ISKMI++ +L ASLD+P+  ++MH T  S LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  282 KMFAKGTEITPPIVVKKLNEILQARGKKGTDRAAQIDLLHLLAGIAEENNLGQGIAVKIKFNIVASLYDYNTNLAT-YMKADMWKKCLDSIHDLLDILFANSNMFIGEHISEDSENLSNTDQ----PLRVRGCILTLIERMDEEFTKIMQNTDPHSQ---EYVDNLKDEARVCEVIERAQKYLQEKG-STEEVCRVYLRRIMHTYYKFDYKAHQRQLSTGQEGLSTYDGRKGDEIISRRKQDQAENEAEDSAILMDRLCKYIYAKDRTDRIRTCAILCHIYHHALHNRWFQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIRDAHNALLDIQSSGRAKELLGQGLLMRTMQERNQEQEKIEKRRQIPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCKNFIINEKMNGKVWDLFPEAERVRSMLIRKIQEESLRTYLFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMASLDQPTQTVVMHGTEPSSLQNTALQLAEKLGNLVENNERIFDHKQGSY 860

HSP 2 Score: 100.908 bits (250), Expect = 3.595e-21
Identity = 53/133 (39.85%), Postives = 94/133 (70.68%), Query Frame = -2

Query: 2053 RPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2442
            +PI   D  + ED +R+V+SA++K++E+L  ++K ++N   I+D+TK LE+FE+L K++ KA   ++ +GV +FYIR++++LE++ N  W +K+   K N  +    + LRQK++KYN+DFEA IA +++N +
Sbjct:   34 QPIILSD--DEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMTKCLEEFEQLGKAFIKAKNIVDKEGVPRFYIRLLSDLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKLRKYNRDFEAPIAAYKQNPE 164

[Close]

BLAST of SMED30004178 vs. Ensembl Mouse
Match: Eif3c (eukaryotic translation initiation factor 3, subunit C [Source:MGI Symbol;Acc:MGI:1926966])

HSP 1 Score: 400.208 bits (1027), Expect = 4.636e-125
Identity = 219/573 (38.22%), Postives = 347/573 (60.56%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEK---FDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------------------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EIT   ++ K+   L+ R  K   R +Q+++LQ L+ +      G+G+ VKI  ++++ L  Y  + +   M  E W+  L+   +++D L  + N I +  + +E+SE    FD  P  V GCI+  +E +++E+TKI+   D  S    EY E L+ E ++ ++   V  YL +K    ++ C++Y+R++ H YY+FD     ++  P                  S   M +L  +I  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML ++ +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDWKT    I ++KM   VW LF   ++++T++V KI+ ES++ +L + ++V++S+S++ L +++EL   +VH +ISKMI++ +L ASLD+P+  ++MHRT  +  Q  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  314 KMFAKGTEITHAVVIKKLNEILQVRGKKGTDRATQIELLQLLVQIAAENNLGVGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWQMCLDCINELMDTLVAHSN-IFVGENILEESENLHNFD-QPLRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVEHLKDEAQVCAIIERVQRYLEEKG-TTEEICQIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 879

HSP 2 Score: 102.449 bits (254), Expect = 1.000e-21
Identity = 61/164 (37.20%), Postives = 105/164 (64.02%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P++ +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE+ I ++++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVSGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPE 164

[Close]

BLAST of SMED30004178 vs. Ensembl Mouse
Match: Eif3c (eukaryotic translation initiation factor 3, subunit C [Source:MGI Symbol;Acc:MGI:1926966])

HSP 1 Score: 100.523 bits (249), Expect = 4.565e-23
Identity = 61/164 (37.20%), Postives = 105/164 (64.02%), Query Frame = -2

Query: 2053 MSRFFHALXXXXXXXXXXXXXXXERPIAFDD-------SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFRENSD 2514
            MSRFF   S     S    E +V +P++ +        S + ED +R+V+SA++K++E+L  +++ ++N   I+D+TK LE+FE L K+Y KA   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE+ I ++++N +
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVSGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPE 164

[Close]

BLAST of SMED30004178 vs. UniProt/SwissProt
Match: sp|B4MRZ8|EIF3C_DROWI (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila willistoni OX=7260 GN=eIF3c PE=3 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 6.496e-137
Identity = 229/576 (39.76%), Postives = 365/576 (63.37%), Query Frame = -2

Query:   55 GWTTV---DMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKE--EIPSYKE-----MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1746
            GW TV    +  +P  K+F  D EI    +L K+   +  R  K+  R+ Q+D+L +L D+      G+ + VKI  +++S +  Y    S P M LE+W  +LE+   ++ +L  NP DI +  S  E+ E+++  PY++ GC +  +E L+DE+TK+L  C   S+D    Y  +L+ E  ++    LV +Y  + N  ++++CR+Y+R++EH+YY+FDP V  K+  +IP+  +     M +L  FI  KD+TDR+RTRAIL HIY+ A+HD WF+ARD++ MS L ++ID AD ST+IL+NR+   LGLCAFR+  +K+AH  L +L  +G+ KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+  G+W+  A+ I + KM   VW LF   + ++ ++V  IK ES++ +L + +NV+ S+S+  L E+YEL    VH +ISKMI++ +L ASLD+PS  ++MHR+  S LQ  A++  DK++ L ++NEK+ D  +  +
Sbjct:  282 GWETVVKGHVVEKP--KMFEKDAEIDIPLVLAKLLEIMSARGKKRTDRRLQIDLLFELRDISDQHELGVPISVKIHFNIISAIFDYNQKISEP-MKLEHWALLLEVMQSMMKLLLANP-DIQLSESVAEEHEEYNATPYLIRGCPLAAVERLDDEFTKLLKECDPHSND----YVSRLKDEINVVKTIELVLQYF-EVNGSNNERCRIYLRKVEHLYYKFDPEVFKKKRGDIPNTTQTSVDIMDRLCKFIYAKDDTDRIRTRAILTHIYHHAMHDNWFQARDLILMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENVKDAHHCLVDLMVTGKAKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESDRVRDMLVKFIKEESLRTYLFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMIINEELMASLDDPSETVVMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNF 848

HSP 2 Score: 102.449 bits (254), Expect = 7.620e-21
Identity = 66/134 (49.25%), Postives = 96/134 (71.64%), Query Frame = -2

Query: 2059 RPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSWX---XXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFREN 2442
            +  AF  S + E+ +R+V+S +EK+YE+L  I+K+++NHK I+DI+  L  FE+LTK+Y+KA   +  E +G+  +FYIR +AELE+F N  W     +KNLSKNN+KSL  LRQK++KY KDFE  ++ FREN
Sbjct:   27 KATAFQFSDDEEEVKRVVRSTKEKRYENLTAIIKSIRNHKKIRDISNTLTSFEDLTKAYQKALPVISKEENGITPRFYIRCLAELEDFINEVWEDRDGRKNLSKNNAKSLGTLRQKVRKYIKDFEDDLSRFREN 160

[Close]

BLAST of SMED30004178 vs. UniProt/SwissProt
Match: sp|Q17Q06|EIF3C_AEDAE (Eukaryotic translation initiation factor 3 subunit C OS=Aedes aegypti OX=7159 GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 8.320e-135
Identity = 223/568 (39.26%), Postives = 357/568 (62.85%), Query Frame = -2

Query:   79 GWTTVD---MYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTV--GIKEEIP-----SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 1746
            GW  V+        + K+FA D EI    ++ K+   +  R  K+  RK Q++ L++L  +      G  +  KI  ++VS +  Y    S P M LE+W ++LE    ++ +L  N +DI +  + +E++E+++  PY + GCI+  +E L+DE+TK+L  C   S+D    Y ++L+ E  + S+   V +Y+ +    D + CRVY+R+++H+YY+FDP V    K+E+P     S  EM +L  F+  KD+TDRLRTRAIL HI++ ALHD WF+ARD++ MS L   I  +D  TQIL+NR    LGLCAFR G +K+AHQ L +L  +G+ KE+LAQG    R NE + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+ +G+W   +  I + KM   VW LF   + ++ +++  IK ES++ +L + +NV+ S+S+ YL E++EL +  VH LISKMI++ +L ASLD+P+  +++HR+  S LQ  +++L+DK++ L + NE++
Sbjct:  281 GWEVVNGNRSTSAEQPKMFAKDAEIDVNVVINKLNEVMAARGKKRTDRKLQIEFLRELRTIADTHNLGDAVAAKIRFNIVSAIFDYNPKVSEP-MKLEHWSKLLEEIQALIKLLLAN-DDIVLSETILEENEEYETAPYKIRGCILTAVERLDDEFTKLLKECDPHSND----YVDRLKDEVTVSSVIEQVVKYIERLG-NDTETCRVYLRKIDHLYYKFDPNVLKKKKKELPASTLTSVDEMDRLCRFVYAKDQTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIHHSDPPTQILYNRTMANLGLCAFRHGNVKDAHQCLVDLMMTGKPKELLAQGLVPQRQNERSLEQEKVEKQRQMPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRHGNWNACSTFIVNKKMNVKVWDLFYEADRVREMLIKFIKEESLRTYLFTYSNVYASISVPYLAEMFELPKSKVHSLISKMIINEELMASLDDPTETVVLHRSEPSRLQALSMQLSDKVTNLVDSNERI 841

HSP 2 Score: 97.4413 bits (241), Expect = 2.718e-19
Identity = 71/160 (44.38%), Postives = 101/160 (63.12%), Query Frame = -2

Query: 2059 MSRFFHALXXXXXXXXXXXXXXXERPIA--FDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHK--TMEADGVL-KFYIRVIAELEEFTNTSWXXXXXXXXXXXXXXX---XLRQKIKKYNKDFEAQIADFREN 2514
            MSRFF    SDSDS  S +  VV RP A  F  S E ED +R+V+S +EK+YEDL  I+KN++N+K I+D++ +L  FEELT+++ KA    T   +GV  +F IR +AELE+F N  W +K+     +  +      LRQK +KY KDF++ +  FRE+
Sbjct:    1 MSRFFAGGGSDSDSESSSDSEVVARPAAPQFTFSDEEEDVKRVVRSTKEKRYEDLSNIIKNIRNYKKIKDMSSMLTSFEELTRAHTKALPVITKVENGVTPRFIIRALAELEDFINMVWEDKEGRKNLSKNNSKSLGTLRQKFRKYIKDFDSDLKKFRES 160

[Close]

BLAST of SMED30004178 vs. UniProt/SwissProt
Match: sp|B4LNA1|EIF3C_DROVI (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila virilis OX=7244 GN=eIF3c PE=3 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 1.584e-134
Identity = 229/577 (39.69%), Postives = 362/577 (62.74%), Query Frame = -2

Query:   55 WTTV---DMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKE--EIP-------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1743
            W TV   ++  +P  K+F  D EI    +L K+   +  R  K+  R+ Q+D+L +L D+      G  + VKI  +++S +  Y    S P M LE+W  +LE+   ++ +L  NP +I+M  S  E+ E++   PY + GC +  +E L+DE+TK+L  C   S+D    Y  +L+ E  ++    LV +Y  +    ++++CR+Y+R++EH+YY+FDP V  ++  E+P       S + M KL  FI  KD+TDR+RTRAIL HIY+ A+HD WF+ARD++ MS L ++ID AD ST+IL+NR+   LGLCAFR+  IK+AH  L +L  +G+ KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+  G+W+  A+ I + KM   VW LF   E ++ ++V  IK ES++ +L + +NV+ S+S+  L ++YEL    VH +ISKMI++ +L ASLD+PS  ++MHR+  S LQ  A++  DK++ L ++NEK+ D  +  +
Sbjct:  286 WETVVKGNVVEKP--KMFEKDAEIDIPLVLAKLVEIMSARGKKRTDRRLQIDLLFELRDISEQHELGTPISVKIHFNIISAIFDYNQKISEP-MKLEHWALLLEVMQSMLKLLLANP-EINMNESVAEEHEEYGAAPYFIRGCPLAAVERLDDEFTKLLKECDPHSND----YVSRLKDEINVVKTIELVVQYFERCG-SNNERCRIYLRKIEHLYYKFDPEVLKRKRGELPAAGTAPSSVEVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESERVREMLVKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPLPKVHSIISKMIINEELMASLDDPSETVVMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNF 853

HSP 2 Score: 101.293 bits (251), Expect = 1.685e-20
Identity = 67/132 (50.76%), Postives = 92/132 (69.70%), Query Frame = -2

Query: 2053 FDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2430
            F  S + E+ +R+V+S +EK+YE+L GI+K ++NHK I+DI   L  FE+LT++Y KA   +  E +G+  +FYIR +AELE+F N  W     +KNLSKNNSKSL  LRQK++KY KDFE  +A FRE  D
Sbjct:   31 FQFSDDEEEVKRVVRSTKEKRYENLTGIIKTIRNHKKIKDIPNTLSSFEDLTRAYTKALPVISKEENGITPRFYIRCLAELEDFINEVWEDREGRKNLSKNNSKSLGTLRQKVRKYIKDFEEDLARFREAPD 162

[Close]

BLAST of SMED30004178 vs. UniProt/SwissProt
Match: sp|B4KN00|EIF3C_DROMO (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila mojavensis OX=7230 GN=eIF3c PE=3 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 1.915e-134
Identity = 229/577 (39.69%), Postives = 361/577 (62.56%), Query Frame = -2

Query:   55 WTTV---DMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKE--EIP-------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1743
            W TV   ++  +P  K+F  D EI    +L K+   +  R  K+  R+ Q+D+L +L D+      G  + VKI  +++S +  Y    S P M LE+W  +LE+   ++ +L  NP DI M  S  E+ E++   P+ + GC +  +E L+DE+TK+L  C   S+D    Y  +L+ E  ++    LV +Y  +    ++++CR+Y+R++EH+YY+FDP V  ++  E+P       S + M KL  FI  KD+TDR+RTRAIL HIY+ A+HD WF+ARD++ MS L ++ID AD ST+IL+NR+   LGLCAFR+  IK+AH  L +L  +G+ KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+  G+W+  A+ I + KM   VW LF   E ++ ++V  IK ES++ +L + +NV+ S+S+  L ++YEL    VH +ISKMI++ +L ASLD+PS  ++MHR+  S LQ  A++  DK++ L ++NEK+ D  +  +
Sbjct:  286 WETVVKGNVVEKP--KMFEKDAEIDIPLVLAKLIEIMSARGKKRTDRRLQIDLLFELRDIAEQHALGTPISVKIHFNIISAIFDYNQKISEP-MKLEHWALLLEVMQSMMKLLLANP-DIIMNESVAEEHEEYVTAPFYIRGCPLAAVERLDDEFTKLLKECDPHSND----YVSRLKDEINVVKTIELVVQYFERCG-NNNERCRIYLRKIEHLYYKFDPEVLKRKRGELPAAGTAPSSVEVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESERVREMLVKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPLPKVHSIISKMIINEELMASLDDPSETVVMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNF 853

HSP 2 Score: 98.5969 bits (244), Expect = 1.097e-19
Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = -2

Query: 2053 FDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2430
            F  S + E+ +R+V+S +EK+YE+L  I+K ++NHK I+DI   L  FE+LT++Y KA   +  E +G+  +FYIR +AELE+F N  W     +KNLSKNN+KSL  LRQK++KY KDFE  +A FRE  D
Sbjct:   31 FQFSDDEEEVKRVVRSTKEKRYENLTSIIKTIRNHKKIKDIPNTLSSFEDLTRAYTKALPVISKEENGITPRFYIRCLAELEDFINEVWEDREGRKNLSKNNAKSLGTLRQKVRKYIKDFEEDLARFREAPD 162

[Close]

BLAST of SMED30004178 vs. UniProt/SwissProt
Match: sp|B4J789|EIF3C_DROGR (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila grimshawi OX=7222 GN=eIF3c PE=3 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 8.732e-134
Identity = 230/587 (39.18%), Postives = 360/587 (61.33%), Query Frame = -2

Query:   55 GWTTV---DMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTV-----GIKEEI-------------PSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1746
            GW TV   ++  +P  K+F  D EI    +L K+   +  R  K+  R+ Q+D+L +L D+      G  + +KI  S++S +  Y    S P M LE+W  +LE+   ++ +L  NP DI+M  S  E+ E++   P+ V GC +  +E L+DE+TK+L  C   S+D    Y  +L+ E  ++    LV +Y       ++++CR+Y+R++EH+YY+FDP V     G ++                S + M KL  FI  KD+TDR+RTRAIL HIY+ A+HD WF+ARD++ MS L ++ID AD ST+IL+NR+   LGLCAFR+  IK+AH  L +L  +G+ KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAA+KA+  G+W+  A+ I + KM   VW LF   E ++ ++V  IK ES++ +L + +NV+ S+S+  L ++YEL    VH +ISKMI++ +L ASLD+PS  ++MHR+  S LQ  A++  DK++ L ++NEK+ D  +  +
Sbjct:  287 GWETVVKGNVVEKP--KMFEKDAEIDVPLVLAKLIEIMSARGKKRTDRRLQIDLLFELRDISEQHSLGTAVAIKIHFSIISAIFDYNLKISEP-MKLEHWALLLEVMQSMMKLLLANP-DINMNESIAEEHEEYATAPFYVRGCPLAAVERLDDEFTKLLKECDPHSND----YVSRLKDEVNVVKTIELVVQYFELSG-SNNERCRIYLRKIEHLYYKFDPEVLKRKRGEQQPATGAAGATPAAPVQSSVEVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESERVREMLVKFIKEESLRTYLFTYSNVYTSISIPSLSQMYELPLPKVHSIISKMIINEELMASLDDPSETVVMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNF 864

HSP 2 Score: 97.8265 bits (242), Expect = 1.813e-19
Identity = 66/132 (50.00%), Postives = 91/132 (68.94%), Query Frame = -2

Query: 2053 FDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2430
            F  S + E+ +R+V+S +EK+YE+L  I+K ++NHK I+DI   L  FE+LT++Y KA   +  E +G+  +FYIR +AELE+F N  W     +KNLSKNNSKSL  LRQK++KY KDFE  +A FRE  D
Sbjct:   31 FQFSDDEEEVKRVVRSTKEKRYENLTSIIKTIRNHKKIKDIPNTLSSFEDLTRAYTKALPVISKEENGITPRFYIRCLAELEDFINEVWEDREGRKNLSKNNSKSLGTLRQKVRKYIKDFEDDLARFREAPD 162

[Close]

BLAST of SMED30004178 vs. TrEMBL
Match: E2F3W6 (Eukaryotic translation initiation factor 3 subunit C (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 503.056 bits (1294), Expect = 1.932e-167
Identity = 242/429 (56.41%), Postives = 320/429 (74.59%), Query Frame = -2

Query:   79 PPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 1347
            PPY + GCII   EH++DEYTKIL   D    +  +Y EKL+FETK+  LC+ ++ YL  K Y  +D CR Y+R++EH+YYRFD      E +       SY+EM+ L  +I  KD+TDRLRTRA+LCHIYYLALHD+W+EARDMMAMS L N IDR+DASTQIL+NR TVQLGLCAFR+G IK++HQALA+LQGSGR+KE+LAQG   NR E T +E  REK  L PYH+HIN++++EC YLVSAML+DVNHC     DGRR MISRNFH+VLK+S+R TL G P+ +++HVVAASKALF GDW+    +I + KM   VW LF     +K ++++KIK+E+++ FLL  +++ +SLSL +L + ++L    +HQ+ISKMIL  +L ASL++P+NCLIMHR+  S LQ  AL+LA++++QL ELNE+L
Sbjct:    3 PPYRLHGCIINLFEHMDDEYTKILQNID---ARAPDYIEKLQFETKVFELCTKLNRYLEMKEYSSNDICRAYLRKVEHMYYRFDYNFKWDESLSDHALSESYQEMKSLCRYILSKDQTDRLRTRAMLCHIYYLALHDHWYEARDMMAMSALQNSIDRSDASTQILYNRATVQLGLCAFRKGFIKDSHQALADLQGSGRLKELLAQGIAPNRYERTKDEENREKARLLPYHQHINLELMECVYLVSAMLSDVNHCLTHYPDGRRRMISRNFHHVLKSSERQTLVGSPETVRDHVVAASKALFVGDWQNTVKNIVNPKMNSKVWDLFHESSAVKQMLIEKIKMEALRTFLLGHSSICDSLSLSFLEKQFDLEIKIIHQIISKMILMDELMASLNDPTNCLIMHRSEPSKLQAMALRLAERVNQLGELNERL 428

[Close]

BLAST of SMED30004178 vs. TrEMBL
Match: K1P5V7 (Eukaryotic translation initiation factor 3 subunit C OS=Crassostrea gigas OX=29159 GN=CGI_10010150 PE=3 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 3.166e-143
Identity = 229/548 (41.79%), Postives = 360/548 (65.69%), Query Frame = -2

Query:   73 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTV--GIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQD 1707
            K+FA D E+  E+++ K+   +  R  K   R  Q+ +L++L  +      G  + +KIM  ++S +  Y  + +  CM  E W++ L    +++D++  NP DI++  + +E+SE    PPY V GC++  +E +++E+TK+L   D  S    EY ++L+ E ++  +   +  YL  +    ++ CRVY+R++EH+YY+FDP      K E  S+K+M ++  FI  KD TDRLRTR++LC IY+ ALHD W++ARD+M MS L + I  +D  TQIL+NR  VQLGLCAFR+G I++AH AL ++Q  GR KE+LAQG  L R +E TPE+   EK  L PYH HIN++++EC YLVSAML +V +    + D RR MIS+NFH+V++ S+R  L G P++++EHVVAASKA+  G+WK   ++I ++KM   VW LF   E ++ ++  KI+ ES++ +L + ++V++SLSL+ L E++E+ Q  VH +ISKMI++ +L ASLDEP++ ++MHRT  + LQ  AL+L++K+S L + NE++ +
Sbjct:  292 KMFAKDTEVNHEAVIKKLNEIISARGKKGTDRNEQIALLKELQSISNANNLGPAISMKIMFHIISAIYDYNPNIAT-CMRSEMWEKCLAGVSELLDMVEANP-DINIGENILEESENVTTPPYRVRGCVLTIVERMDEEFTKMLQACDAHS---TEYVDRLKDEKEVCVILDRLQTYLVPRG-TTEEICRVYLRRIEHMYYKFDPEAYDNPKLENKSFKDMEEMCKFIYAKDLTDRLRTRSMLCQIYHQALHDRWYQARDLMLMSHLQDTIQHSDVPTQILYNRTMVQLGLCAFRKGNIRDAHNALVDIQSGGRAKELLAQGLLLQRQHERTPEQEKIEKRRLLPYHMHINLELLECVYLVSAMLIEVPYMAAHEMDARRRMISKNFHHVMRMSERQALTGPPESMREHVVAASKAMKTGNWKECKNYIINEKMNAKVWELFYKSETVQEMVTSKIQEESLRTYLFTYSSVYDSLSLETLAEMFEIDQGVVHSIISKMIINEELMASLDEPTHTVVMHRTEPTRLQSLALQLSEKVSSLVDNNERIME 833

HSP 2 Score: 110.153 bits (274), Expect = 1.013e-20
Identity = 61/134 (45.52%), Postives = 98/134 (73.13%), Query Frame = -2

Query: 2053 RPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADG-VLKFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2442
            RP+A+  S + ++ +RIV+SA++K++++L+ I+K + NHK I+D+  VL DFEEL K+Y+K+ K +E +  + +F++R + ELE+F +  W     +K +SKNN+K L  LRQK+KKYN+DFE+ IA +REN D
Sbjct:   32 RPVAYAFSDDEDEPKRIVRSAKDKRFDELREIIKKMGNHKKIKDMASVLTDFEELGKAYDKSKKVIEKENQIPRFFLRCLVELEDFVSECWEDREGRKQMSKNNAKGLTTLRQKLKKYNRDFESDIATYRENPD 165

[Close]

BLAST of SMED30004178 vs. TrEMBL
Match: A0A1J1IYL2 (Eukaryotic translation initiation factor 3 subunit C OS=Clunio marinus OX=568069 GN=CLUMA_CG017966 PE=3 SV=1)

HSP 1 Score: 452.21 bits (1162), Expect = 1.190e-141
Identity = 238/573 (41.54%), Postives = 361/573 (63.00%), Query Frame = -2

Query:   55 NGWTTVDMYGRPE-VKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILT-CHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTV-----GIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1749
             GW TV  YG  E  K+FA D EI    +L+K+   +  R  KK  RK Q++ L +L  +      G  L VKI  ++VS +  Y    S P M +E W ++LE+  D++ +L  N NDI +  S  +++E+++  PY + GC++  +E L+DE+ K+L  C   S+D    Y E+L+ E  +  L   V +Y+  +     + CRVY+R+++H+YY+FDP V     G  E   S  EM KL  FI   D TDRLRTRAIL HI++ ALHD WF+ARD++ MS L   I  +D STQIL+NR+   LGLCAFR+G IK+AHQ L EL  + + KE+LAQG    R +E + E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ F+  L++S+R +L G P++++EHVVAASKA+ +G+WK  ++ I + KM   VW LF   + ++ ++V  IK ES++ +L + +NV+ S+S+ YL E+Y+L +  VH +ISKMI++ +L ASLD+P+  ++MHR+  S LQ  +++LADKI+ L + NE++ +A +P +
Sbjct:  281 GGWETVPKYGASEKPKMFAKDAEIDIHIVLSKLNEVMSNRGKKKTDRKLQIEFLHELKTIAEQHNLGAALAVKIRFNIVSAIFDYNLKISEP-MKIEYWSKLLEVMADLMKLLLVNLNDIKLSESITDETEEYETKPYRLRGCVLTAVERLDDEFIKLLKECDPHSND----YVERLKDEVTVTKLIEQVLKYVEVQG-TPLEICRVYLRKIDHLYYKFDPNVLKKKKGQFENRTSVDEMEKLCHFIYANDNTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIQHSDPSTQILYNRMMANLGLCAFRQGNIKDAHQCLIELMMTTKPKELLAQGLLPQRQHERSVEQEKVEKQRQMPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAASKAMRHGEWKACSEFIVNKKMNTKVWDLFYEADRVREMLVKFIKEESLRTYLFTYSNVYGSISVPYLSEMYDLPKLKVHSIISKMIINEELMASLDDPTETVVMHRSEPSRLQALSMQLADKITNLVDANERIFEAKQPNF 847

HSP 2 Score: 97.4413 bits (241), Expect = 7.240e-17
Identity = 61/128 (47.66%), Postives = 90/128 (70.31%), Query Frame = -2

Query: 2053 SESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTM--EADGVL-KFYIRVIAELEEFTNTSWX---XXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSD 2418
            S+ ED +R+V+S +EK+YE+L  I+K+++NH+ I+DI  +L  FE+ T++Y KA   +  E  G++ +F IR I ELE+F N +W     +KN+SKNN KSL  LRQK +KY KDFE+++  FREN D
Sbjct:   37 SDDEDVKRVVRSQKEKRYEELTNIIKSIRNHRKIKDIGSILSSFEDFTRAYTKAQPVIIKEEKGIIPRFVIRSIVELEDFINVTWEDKDGRKNMSKNNGKSLGTLRQKFRKYIKDFESEMKKFRENPD 164

[Close]

BLAST of SMED30004178 vs. TrEMBL
Match: A0A2T7PD49 (Eukaryotic translation initiation factor 3 subunit C OS=Pomacea canaliculata OX=400727 GN=C0Q70_06733 PE=3 SV=1)

HSP 1 Score: 449.514 bits (1155), Expect = 2.009e-141
Identity = 235/550 (42.73%), Postives = 354/550 (64.36%), Query Frame = -2

Query:   70 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPT---VGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDA 1707
            K+FA D+EI  E+++ K+   +  R  K   R   +D+L +L ++      G  + VKI+ ++++ +  Y  + +  CM  E W+  LE    ++D+L R   +I++    +E++E F+  PY V GCI+  +E +++E+TK+L   D  S    E+ E+L+ E K+  L   +  Y+ K    ++  CR Y+R++EH+Y++FDPT   V   + + S K M KL  FI  KD TDRLRTRAILC IY+ ALHD WF+ARD+M MS L ++I  +D  TQIL+NR  VQLGLCAFR+G +++AH AL ++Q S R KE+LAQG    R +E TPE+   EK  L PYH HIN++++EC YLVSAML ++ +    + D RR MIS+NFH+V+K S+R TL G P++++EHVVAASKA+  GDW+   + I ++KM   VW LF   ++++ +I  KI+ ES++ +L   ++V++S+SL YL  ++EL    VH +ISKMI+  +L ASLDEPS  L MHRT  + LQ  AL+LA+K++ L E NE++ + 
Sbjct:  263 KMFAKDQEINHEAVVKKLYEIVAARGKKGTDRSQMIDMLVELKNVSDANNLGPAMHVKILFNIMAAIFDYNPNIAT-CMRNEMWEMCLETMTTLMDMLTRR-EEINVGEKILEENENFETVPYRVRGCILTVMERVDEEFTKMLQACDAHS---TEFVERLKDEQKVCKLLEDLEIYVEKHGTSEE-ICRCYLRRIEHLYFKFDPTAFDVPADKSVTSEKLMDKLCKFIYAKDLTDRLRTRAILCQIYHHALHDRWFQARDLMLMSHLQDNIQHSDVPTQILYNRTLVQLGLCAFRQGHVRDAHNALVDIQSSNRAKELLAQGLVPQRQHERTPEQEKIEKRRLLPYHMHINLELLECVYLVSAMLLEIPYMAAHELDVRRRMISKNFHHVMKMSERQTLTGPPESMREHVVAASKAMKAGDWRACKNFIINEKMNAKVWDLFHQADKVRDLIRSKIQEESLRTYLFCYSSVYDSISLPYLALMFELETPVVHSIISKMIIGEELMASLDEPSQVLSMHRTEPTRLQSLALQLAEKVASLVENNERIMEV 806

HSP 2 Score: 113.62 bits (283), Expect = 6.751e-22
Identity = 76/159 (47.80%), Postives = 110/159 (69.18%), Query Frame = -2

Query: 2059 MSRFFHALXXXXXXXXXXXXXXXERPI----AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXX---XXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFREN 2514
            MSRFF A S     ++SEEEV  +RP     A+  S + ED RRIV+S ++K+YE+L+ I+K LKNHK I+D+  VL DFE L ++Y+KA K ++ +G+ +FY+R + ELE+F   SW +   +K +SKNNSK L  LRQK+KKY + FE +++ +REN
Sbjct:    1 MSRFFRAGSDSETETESEEEVQQQRPAIPARAYQLSDDEEDARRIVRSEKDKRYEELRDIIKTLKNHKKIKDMASVLTDFESLGRAYDKARKVVDKEGIPRFYLRCLVELEDFVTESWEDREWRKTISKNNSKGLTTLRQKLKKYCRTFEEEMSHYREN 159

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BLAST of SMED30004178 vs. TrEMBL
Match: A0A1S3INZ7 (Eukaryotic translation initiation factor 3 subunit C OS=Lingula unguis OX=7574 GN=LOC106166059 PE=3 SV=1)

HSP 1 Score: 445.277 bits (1144), Expect = 4.155e-139
Identity = 225/546 (41.21%), Postives = 354/546 (64.84%), Query Frame = -2

Query:   73 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNR-NEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQD 1707
            K+F  D EI  + +  K+   +  R  K   R  Q+++L +L  +      G  ++ KIM ++ + L  Y  + +  CM  E W+R +E   +++++L  N  +IS+     E+SE+ +  PY+V GCI+  +E +++E+TK+L   D  S    EY E+LR E K+  +   +  YL  ++  +++ CR Y+++++H+YY+++P V  + +  S + M  L  FI  KD+TDR+RT AILC IY+ A+HD W++ARD+M MS L + I  +D   QIL+NR  VQLGLCAFR+G IK+AH  L ++Q  GR KE+LAQG  L R +E TPE+   EK    PYH HIN++++EC YLVSAML ++ +    + D RR MIS+NFH+V++ S+RN L G P++++EH+VAASKA+  GDWK   D+  ++KM K VW LF+N  E   +IV KI+ ES++ +L + ++V++SLS+  + E++EL + +VH +ISKMI++ +L ASLDEP+  ++MHRT  + LQ  AL+LA+K++ L E NE++ +
Sbjct:  308 KMFGKDVEINHKVVCMKLIEIVAARGKKGTDRNEQINMLIELNSIASENNLGPAMEAKIMFNIAAALFDYNPNIAT-CMRAEMWERCIEFVLELLNLLITN-KEISVGEDITEESEQLEVAPYLVRGCILTVVERMDEEFTKMLQGCDAHS---TEYVERLRDEKKVCDIIDRLVVYLEGRS-SNEELCRAYLKKIQHLYYKYEP-VSPEGQKNSEEVMETLCRFIHTKDQTDRIRTNAILCQIYHHAIHDRWYQARDLMMMSHLQDTIHHSDVPLQILYNRAMVQLGLCAFRQGMIKDAHHCLVDIQSGGRAKELLAQGLLLQRQHERTPEQEKIEKRRQMPYHMHINLELLECVYLVSAMLMEIPYMAAHEFDARRRMISKNFHHVMRVSERNPLVGPPESMREHIVAASKAMKVGDWKACRDYAINEKMNKKVWDLFQNTAETCEMIVSKIQEESLRTYLFTYSSVYDSLSMDNMAEMFELPKATVHSIISKMIINEELMASLDEPTQTVVMHRTEPTRLQSLALQLAEKVATLVENNERIME 846

HSP 2 Score: 119.783 bits (299), Expect = 8.082e-24
Identity = 66/128 (51.56%), Postives = 98/128 (76.56%), Query Frame = -2

Query: 2059 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFREN 2433
            AF  S + ED +R+V+SA++K+YE+++ I+K LKNHK I+D++ VL DFE+L ++Y+KA K +E +G+ +FY+R + ELE+F +  W     +K LSKNN+KSL  LRQK+KKYN+DFE  I+D+REN
Sbjct:   35 AFTFSDDEEDTKRVVRSAKDKRYEEIRNIIKQLKNHKKIKDMSNVLSDFEDLGRAYDKAKKVVEKEGIPRFYLRALVELEDFVSECWEDREARKQLSKNNAKSLTTLRQKLKKYNRDFEQGISDYREN 162

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BLAST of SMED30004178 vs. Ensembl Cavefish
Match: eif3c (eukaryotic translation initiation factor 3 subunit C [Source:NCBI gene;Acc:103023166])

HSP 1 Score: 403.675 bits (1036), Expect = 2.219e-126
Identity = 222/571 (38.88%), Postives = 348/571 (60.95%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ L+   +++DIL  N N+I +  +  EDSE       P+ V GCI+  +E +++E+TKI+   D  S    EY + L+ E  + ++   + +YL  K    ++ CRVY+R++ H YY+FD      ++GI+ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E+++L   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  317 KMFAKGTEINTTVVVKKLNEILQARGKKGTDRAAQIELLHALAAISEEHNLGQGISVKIKFNIIASLYDYNPNLAT-FMKPDMWKKCLDCINELLDILFGN-NNIFIGENIAEDSENLAVSEQPFRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGCVCNIIDRLLQYLESKG-STEEVCRVYLRRIMHTYYKFDYKTHRRSMGIQGESKSEQDQEESEGEDSAVIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPEAQRVREMLVRKIQEESLRTYLFTYSSVYDSISMETLSEMFQLELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGGLVENNERVFDLKQGVY 881

HSP 2 Score: 98.5969 bits (244), Expect = 1.259e-20
Identity = 50/124 (40.32%), Postives = 89/124 (71.77%), Query Frame = -2

Query: 2059 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFREN 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+D+ K LE+FE+L +++ K+   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE  IA+++EN
Sbjct:   39 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMAKCLEEFEQLCRAFLKSKAIVDKEGVPQFYIRLLADLEDYLNQLWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFETDIANYKEN 162

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Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ L+   +++DIL  N N+I +  +  EDSE       P+ V GCI+  +E +++E+TKI+   D  S    EY + L+ E  + ++   + +YL  K    ++ CRVY+R++ H YY+FD      ++GI+ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E+++L   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  317 KMFAKGTEINTTVVVKKLNEILQARGKKGTDRAAQIELLHALAAISEEHNLGQGISVKIKFNIIASLYDYNPNLAT-FMKPDMWKKCLDCINELLDILFGN-NNIFIGENIAEDSENLAVSEQPFRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGCVCNIIDRLLQYLESKG-STEEVCRVYLRRIMHTYYKFDYKTHRRSMGIQGESKSEQDQEESEGEDSAVIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPEAQRVREMLVRKIQEESLRTYLFTYSSVYDSISMETLSEMFQLELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGGLVENNERVFDLKQGVY 881

HSP 2 Score: 98.5969 bits (244), Expect = 1.259e-20
Identity = 50/124 (40.32%), Postives = 89/124 (71.77%), Query Frame = -2

Query: 2059 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXX---XXLRQKIKKYNKDFEAQIADFREN 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+D+ K LE+FE+L +++ K+   ++ +GV +FYIR++A+LE++ N  W +K+   K N  +    + LRQKI+KYN+DFE  IA+++EN
Sbjct:   39 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMAKCLEEFEQLCRAFLKSKAIVDKEGVPQFYIRLLADLEDYLNQLWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFETDIANYKEN 162

[Close]

BLAST of SMED30004178 vs. Ensembl Cavefish
Match: eif3c (eukaryotic translation initiation factor 3 subunit C [Source:NCBI gene;Acc:103023166])

HSP 1 Score: 403.29 bits (1035), Expect = 3.996e-126
Identity = 222/571 (38.88%), Postives = 348/571 (60.95%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ L+   +++DIL  N N+I +  +  EDSE       P+ V GCI+  +E +++E+TKI+   D  S    EY + L+ E  + ++   + +YL  K    ++ CRVY+R++ H YY+FD      ++GI+ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E+++L   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  317 KMFAKGTEINTTVVVKKLNEILQARGKKGTDRAAQIELLHALAAISEEHNLGQGISVKIKFNIIASLYDYNPNLAT-FMKPDMWKKCLDCINELLDILFGN-NNIFIGENIAEDSENLAVSEQPFRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGCVCNIIDRLLQYLESKG-STEEVCRVYLRRIMHTYYKFDYKTHRRSMGIQGESKSEQDQEESEGEDSAVIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPEAQRVREMLVRKIQEESLRTYLFTYSSVYDSISMETLSEMFQLELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGGLVENNERVFDLKQGVY 881

HSP 2 Score: 98.9821 bits (245), Expect = 8.782e-21
Identity = 54/124 (43.55%), Postives = 94/124 (75.81%), Query Frame = -2

Query: 2059 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFREN 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+D+ K LE+FE+L +++ K+   ++ +GV +FYIR++A+LE++ N  W     KK ++KNN+K+L+ LRQKI+KYN+DFE  IA+++EN
Sbjct:   39 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMAKCLEEFEQLCRAFLKSKAIVDKEGVPQFYIRLLADLEDYLNQLWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFETDIANYKEN 162

[Close]

BLAST of SMED30004178 vs. Ensembl Cavefish
Match: eif3c (eukaryotic translation initiation factor 3 subunit C [Source:NCBI gene;Acc:103023166])

HSP 1 Score: 403.675 bits (1036), Expect = 4.116e-126
Identity = 222/571 (38.88%), Postives = 348/571 (60.95%), Query Frame = -2

Query:   55 KLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1707
            K+FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ L+   +++DIL  N N+I +  +  EDSE       P+ V GCI+  +E +++E+TKI+   D  S    EY + L+ E  + ++   + +YL  K    ++ CRVY+R++ H YY+FD      ++GI+ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  AD   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E+++L   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  317 KMFAKGTEINTTVVVKKLNEILQARGKKGTDRAAQIELLHALAAISEEHNLGQGISVKIKFNIIASLYDYNPNLAT-FMKPDMWKKCLDCINELLDILFGN-NNIFIGENIAEDSENLAVSEQPFRVRGCILTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGCVCNIIDRLLQYLESKG-STEEVCRVYLRRIMHTYYKFDYKTHRRSMGIQGESKSEQDQEESEGEDSAVIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPEAQRVREMLVRKIQEESLRTYLFTYSSVYDSISMETLSEMFQLELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGGLVENNERVFDLKQGVY 881

HSP 2 Score: 98.9821 bits (245), Expect = 9.904e-21
Identity = 54/124 (43.55%), Postives = 94/124 (75.81%), Query Frame = -2

Query: 2059 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSW---XXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFREN 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+D+ K LE+FE+L +++ K+   ++ +GV +FYIR++A+LE++ N  W     KK ++KNN+K+L+ LRQKI+KYN+DFE  IA+++EN
Sbjct:   39 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMAKCLEEFEQLCRAFLKSKAIVDKEGVPQFYIRLLADLEDYLNQLWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFETDIANYKEN 162

[Close]

BLAST of SMED30004178 vs. Ensembl Yeast
Match: NIP1 (eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3); involved in the assembly of preinitiation complex and start codon selection; eIF3 is also involved in programmed stop codon readthrough [Source:SGD;Acc:S000004926])

HSP 1 Score: 179.874 bits (455), Expect = 2.167e-47
Identity = 153/590 (25.93%), Postives = 288/590 (48.81%), Query Frame = -2

Query:  121 NGWTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWK-------RILEITFDIVDILNRN----PNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTK-ILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNK--KNYGDDDKC--RVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDR----------------------LRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGT----RLN-RNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNH--CHMQQADGRRVMIS-RNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRT-RTSGLQIAALKL 1749
            NG+T     G         +++  +E   T++++ ++ R  K   ++S +  L++L+  V  + +       IM  L  +  ++  SA+     ++ WK       ++L I    +D    N    P D  +     EDS+        + G I  F+E L+DE+ K +L     SSD    Y  +LR E  I +L      Y     K+  D ++   R ++++L+HIYY+ +  + I E         +     T KD+ D                       ++ RAIL +IYY AL+  +  A+DM+  S +  +I++ D+S QILFNRV VQLGL AF+   I+E HQ L +L  S  ++EIL Q +     LN  N A+ +E  R+ +   PYH+HIN+D+I+  +L  ++L ++            +R+  S ++    L++ D+ +  G P+ L+++V+ A+K++  G+W+ +  ++ + K     WAL  N E +   + +++++ES+K +  S    ++S S+  L E+++L ++ V +++  +I + ++ A L++     ++ +    + L+ A +KL
Sbjct:  236 NGFTISSSQG---------NDQAVQEDFFTRLQTIIDSRGKKTVNQQSLISTLEELL-TVAEKPYEF-----IMAYLTLIPSRFDASANLSYQPIDQWKSSFNDISKLLSILDQTIDTYQVNEFADPIDF-IEDEPKEDSDGVK----RILGSIFSFVERLDDEFMKSLLNIDPHSSD----YLIRLRDEQSIYNLILRTQLYFEATLKDEHDLERALTRPFVKRLDHIYYKSENLIKIMETAAWNIIPAQFKSKFTSKDQLDSADYVDNLIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCL---PYHQHINLDLIDVVFLTCSLLIEIPRMTAFYSGIKVKRIPYSPKSIRRSLEHYDKLSFQGPPETLRDYVLFAAKSMQKGNWRDSVKYLREIKS----WALLPNMETVLNSLTERVQVESLKTYFFSFKRFYSSFSVAKLAELFDLPENKVVEVLQSVIAELEIPAKLNDEKTIFVVEKGDEITKLEEAMVKL 794

[Close]

BLAST of SMED30004178 vs. Ensembl Nematostella
Match: EDO41901 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S347])

HSP 1 Score: 389.423 bits (999), Expect = 1.590e-122
Identity = 223/580 (38.45%), Postives = 336/580 (57.93%), Query Frame = -2

Query:   79 GWTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRI-LEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYM--VSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKE-------------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRN-EATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGL-QIAALKLADKISQLAELNEKL 1746
            GWT V         LF  D EIT   +L K+   L  R  K   R  Q++ L +L  +      G  + VK+M +++S +  Y  + +  CM  + W++  L+   +++ IL  N + I +    ME++E FD       + GC++  +E +++E+TK+L   D  S    EY E+L+ E  +  +   +  YL +KN   ++ CR+Y+R++EHIYY+       K+++   K+                   M  L  +I  KD +DR+RTRA++CH+Y+ ALH+ WF ARD+M MS L   I  +D  TQIL+NR  VQLGLCAFR G IK+AH AL ++Q SGR KE+LAQG    R  E TPE+   EK    P+H HIN++++EC YL SAML ++        D RR +IS++FHY L+ SD+ TL G P++++EHVVAASKA+  GDW+   D+I   K    VW LF   +++K ++  KI+ ES++ +L +  +V++SLSL  L E+++L    VH  ISKMI++ +L+AS DEP+  ++MHR     L Q  AL+LADK+  L E NE++
Sbjct:  248 GWTEVKGITEKAKHLFPKDTEITVPVVLKKLHEILSARGKKGTDRTDQIEFLMELRKVAEEAKLGEAMTVKLMFNIISSIFDYNPNVAT-CMKADMWQQYRLKAISELIAILENN-SGIFVGEHVMEENETFDMKENQQRIRGCVLSVIERMDNEFTKMLQGCDCHS---TEYVERLKDEKTVTDIIKRLQAYL-EKNGTREELCRIYLRRIEHIYYKMVQKDKEKQDVEKEKQDNEKESEEKKSEDEDSKNTMDFLCKYIYSKDTSDRIRTRAMMCHVYHHALHNRWFAARDLMLMSHLQETIQHSDILTQILYNRTMVQLGLCAFRHGMIKDAHNALHDVQSSGRAKELLAQGLMQQRQFERTPEQEKIEKRRQVPFHMHINLELLECVYLTSAMLLEIPFMAAHAYDHRRRVISKSFHYQLRQSDKQTLVGPPESMREHVVAASKAMKTGDWRKCKDYILAVK----VWKLFSCADQVKEMLTRKIQEESLRTYLFTYNSVYDSLSLHTLAEMFDLPPSVVHSTISKMIINEELQASWDEPTQTVVMHRGAEPTLVQNLALQLADKVGNLVENNERI 817

HSP 2 Score: 96.2857 bits (238), Expect = 2.272e-20
Identity = 50/124 (40.32%), Postives = 86/124 (69.35%), Query Frame = -2

Query: 2059 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXX---XXXXXXLRQKIKKYNKDFEAQIADFREN 2421
            S E E+ +R+V+S ++K++++L  ++K LKNHK I+D+ K L +FE L K++ KA   ++ +G+  F+IR ++ELE+F   +W + +   K +   +++LA LRQK++KY+KDFE  I  +REN
Sbjct:    3 SDEEEETKRVVRSQKDKRFDELSNVIKQLKNHKKIKDMAKCLTEFENLGKAFTKAKAVVDKEGIPPFFIRALSELEDFVKENWEDAEGRKKLSKINARALATLRQKLRKYSKDFEDDIEKYREN 126

[Close]

BLAST of SMED30004178 vs. Ensembl Medaka
Match: eif3c (eukaryotic translation initiation factor 3 subunit C [Source:NCBI gene;Acc:101174301])

HSP 1 Score: 400.208 bits (1027), Expect = 9.133e-126
Identity = 224/581 (38.55%), Postives = 351/581 (60.41%), Query Frame = -2

Query:   55 YGRPEVK----LFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1725
            YG P VK    +FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ LE   +++DIL  N N+I +  +  EDSE       P+ V GC++  +E +++E+TKI+   D  S    EY + L+ E ++  +   +  YL  K    ++ CRVY+R++ H YY+FD      ++G++ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  +D   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E+++L   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  271 YGVPLVKEKPKMFAKGTEINTTVVVKKLNEILQARGKKGTDRAAQIELLHALAAIAAEHNLGQGILVKIKFNIIASLYDYNPNLA-AFMKADMWKKCLECIDELLDILFEN-NNIFIGENIAEDSENLAVSDQPFRVRGCVLTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGRVCGIVDRLLTYLENKG-STEEICRVYLRRIMHTYYKFDYKAHRRSLGLQGETKSEQDQEESEGEDSALIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIHHSDPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPETQRVREMLVRKIQEESLRTYLFTYSSVYDSISMEILSEMFQLEMPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGSLVENNERVFDLKQGVY 845

HSP 2 Score: 98.5969 bits (244), Expect = 1.067e-20
Identity = 55/128 (42.97%), Postives = 95/128 (74.22%), Query Frame = -2

Query: 2047 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWX---XXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSDLY 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+D+ K LE+FE+L +++ K+   ++ +GV  FYIR++A+LE++ N  W     KK ++KNN+K+L+ LRQKI+KYN+DFE +IA ++E S L+
Sbjct:   38 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMAKCLEEFEQLCRAFLKSKNIVDKEGVPSFYIRLLADLEDYLNQLWEDKDGKKKMNKNNAKALSTLRQKIRKYNRDFETEIAAYKETSLLH 165

[Close]

BLAST of SMED30004178 vs. Ensembl Medaka
Match: eif3c (eukaryotic translation initiation factor 3 subunit C [Source:NCBI gene;Acc:101174301])

HSP 1 Score: 400.979 bits (1029), Expect = 4.776e-125
Identity = 224/581 (38.55%), Postives = 351/581 (60.41%), Query Frame = -2

Query:   55 YGRPEVK----LFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFP--PYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFD-----PTVGIKEEIPSYKE------------MRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRL-NRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 1725
            YG P VK    +FA   EI    ++ K+   L+ R  K   R +Q+++L  L  +      G G+ VKI  ++++ L  Y  + +   M  + WK+ LE   +++DIL  N N+I +  +  EDSE       P+ V GC++  +E +++E+TKI+   D  S    EY + L+ E ++  +   +  YL  K    ++ CRVY+R++ H YY+FD      ++G++ E  S ++            M +L  FI  KD TDR+RT AILCHIY+ ALH  W++ARD+M MS L ++I  +D   QIL+NR  VQLG+CAFR+G IK+AH AL ++Q SGR KE+L QG  + N  E   E+   EK    P+H HIN++++EC YLVSAML ++ +    + D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+  GDW+T    I ++KM   VW LF   + ++ ++V KI+ ES++ +L + ++V++S+S++ L E+++L   +VH +ISKMI++ +L ASLD+P+  ++MHRT  + LQ  AL+LA+K+  L E NE++ D  +  Y
Sbjct:  301 YGVPLVKEKPKMFAKGTEINTTVVVKKLNEILQARGKKGTDRAAQIELLHALAAIAAEHNLGQGILVKIKFNIIASLYDYNPNLA-AFMKADMWKKCLECIDELLDILFEN-NNIFIGENIAEDSENLAVSDQPFRVRGCVLTLVERMDEEFTKIMQNTDPHSQ---EYVDNLKDEGRVCGIVDRLLTYLENKG-STEEICRVYLRRIMHTYYKFDYKAHRRSLGLQGETKSEQDQEESEGEDSALIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIHHSDPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAMLLEIPYMAAHEFDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWRTCHSFIINEKMNSKVWDLFPETQRVREMLVRKIQEESLRTYLFTYSSVYDSISMEILSEMFQLEMPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTSLQNMALQLAEKLGSLVENNERVFDLKQGVY 875

HSP 2 Score: 97.8265 bits (242), Expect = 2.289e-20
Identity = 54/124 (43.55%), Postives = 93/124 (75.00%), Query Frame = -2

Query: 2059 SSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWX---XXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFREN 2421
            S + ED +R+V+SA++K++E+L  ++K ++N   I+D+ K LE+FE+L +++ K+   ++ +GV  FYIR++A+LE++ N  W     KK ++KNN+K+L+ LRQKI+KYN+DFE +IA ++EN
Sbjct:   38 SDDEEDTKRVVRSAKDKRFEELTNLIKTIRNAMKIRDMAKCLEEFEQLCRAFLKSKNIVDKEGVPSFYIRLLADLEDYLNQLWEDKDGKKKMNKNNAKALSTLRQKIRKYNRDFETEIAAYKEN 161

[Close]

BLAST of SMED30004178 vs. Planmine SMEST
Match: SMESG000025475.1 (SMESG000025475.1)

HSP 1 Score: 1445.64 bits (3741), Expect = 0.000e+0
Identity = 820/820 (100.00%), Postives = 820/820 (100.00%), Query Frame = -2

Query:   55 MSRFFHALXXXXXXXXXXXXXXXERPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXXXXXXXLRQKIKKYNKDFEAQIADFRENSDLYXXXXXXXXXXXXXXXXXXXEDPKKVSTLKDKXXXXXXXXXXXXXXXXXXXXXXXXXELYKNDPAARFLKSHTSXXXXXXXXXXXXXXXXXXXXXXXXXDNGWTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 2514
            MSRFFHALSSDSDSSDSEEEVVVERPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWANKKNLSKNNSKSLAALRQKIKKYNKDFEAQIADFRENSDLYPLELVPEVIEEEKAVEKKQEDPKKVSTLKDKSDSEDEMWDQDSSSESSTSEDEEEIELYKNDPAARFLKSHTSKQKDKKKKEKREKDQKEYKRKDKDDDNGWTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY
Sbjct:    1 MSRFFHALSSDSDSSDSEEEVVVERPIAFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWANKKNLSKNNSKSLAALRQKIKKYNKDFEAQIADFRENSDLYPLELVPEVIEEEKAVEKKQEDPKKVSTLKDKSDSEDEMWDQDSSSESSTSEDEEEIELYKNDPAARFLKSHTSKQKDKKKKEKREKDQKEYKRKDKDDDNGWTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKLQDASKPKY 820

[Close]

BLAST of SMED30004178 vs. Planmine SMEST
Match: SMESG000025491.1 (SMESG000025491.1)

HSP 1 Score: 703.745 bits (1815), Expect = 0.000e+0
Identity = 392/805 (48.70%), Postives = 558/805 (69.32%), Query Frame = -2

Query:   79 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXX-XXXXXLRQKIKKYNKDFEAQIADFRENSDLYXXXXXXXXXXXXXXXXXXX---EDPKKVSTLKDKXXXXXXXXXXXXXXXXXXXXXXXXXELYKNDPAARFLK--------SHTSXXXXXXXXXXXXXXXXXXXXXXXXXDNGWTTVDMYGRPE--VKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 2433
             F+ S   EDE+R+V+S + K+YE+L+ I+KNLKNHK  +DI  VL DFE LTK ++KA K ++ +GV KFYIR +AELE+F N  W N K     N+ KSLA LRQ+++KYNK++E  I  FREN ++YP +L+ E+  E       +    + +K      K +  +   D   +S +S+SED+E  ELYKN+PAARFLK            ++K+K+K+E++++ +++     + D +GWT VD  G+PE   ++F  +EEIT ES+L K+   ++GR  K+ QR+ Q ++L+QL  +VV++ FG G Q+K+++S  S LLQY  + +N C+ +E W +I+     ++DIL  N N+++++ + +E+SE    PPY + GCII   EH++DEYTKIL   D  +    +Y EKL+FETK+  LC+ ++ YL  K Y  +D CR Y+R++EH+YYRFD      E +       SY+EM+ L  +I  KD+TDRLRTRA+LCHIYYLALHD+W+EARDMMAMS L N IDR+DASTQIL+NR TVQLGLCAFR+G IK++HQALA+LQGSGR+KE+LAQG   NR E T +E  REK  L PYH+HIN++++EC YLVSAML+DVNHC     DGRR MISRNFH+VLK+S+R TL G P+ +++HVVAASKALF GDW+    +I + KM   VW LF     +K ++++KIK+E+++ FLL  +++ +SLSL +L + ++L    +HQ+ISKMIL  +L ASL++P+NCLIMHR+  S LQ  AL+LA++++QL ELNE+L
Sbjct:   42 VFESSDSEEDEKRVVRSGKVKRYEELENIIKNLKNHKKNRDINNVLIDFEILTKCFDKAKKIIDIEGVPKFYIRTVAELEDFINDLWDNHKKTLNKNNCKSLATLRQRLRKYNKEYETDIKLFRENPEVYPEDLIQEIKIEIDEEAAVECPHLEDRKHDQKYQKVEESESESDWGDNSTTSSSEDDEAKELYKNNPAARFLKRTDEKSTEKKKKEKKEKEKEERKKEKKRKQLSAGESDVDGWTAVDGSGKPEKLTRVFEKNEEITAESVLKKIDDIIQGRVVKRGQRQIQFEMLEQLHKIVVDQNFGPGFQIKLIISCTSFLLQYN-NKTNSCLKIEQWNKIMCNVSALLDILLNNVNNVTLKINVLEESENLLDPPYRLHGCIINLFEHMDDEYTKILQNIDARAP---DYIEKLQFETKVFELCTKLNRYLEMKEYSSNDICRAYLRKVEHMYYRFDYNFKWDESLSDHALSESYQEMKSLCRYILSKDQTDRLRTRAMLCHIYYLALHDHWYEARDMMAMSALQNSIDRSDASTQILYNRATVQLGLCAFRKGFIKDSHQALADLQGSGRLKELLAQGIAPNRYERTKDEENREKARLLPYHQHINLELMECVYLVSAMLSDVNHCLTHYPDGRRRMISRNFHHVLKSSERQTLVGSPETVRDHVVAASKALFVGDWQNTVKNIVNPKMNSKVWDLFHESSAVKQMLIEKIKMEALRTFLLGHSSICDSLSLSFLEKQFDLEIKIIHQIISKMILMDELMASLNDPTNCLIMHRSEPSKLQAMALRLAERVNQLGELNERL 842

[Close]

BLAST of SMED30004178 vs. Planmine SMEST
Match: SMESG000025491.1 (SMESG000025491.1)

HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 392/805 (48.70%), Postives = 558/805 (69.32%), Query Frame = -2

Query:   79 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXX-XXXXXLRQKIKKYNKDFEAQIADFRENSDLYXXXXXXXXXXXXXXXXXXX---EDPKKVSTLKDKXXXXXXXXXXXXXXXXXXXXXXXXXELYKNDPAARFLK--------SHTSXXXXXXXXXXXXXXXXXXXXXXXXXDNGWTTVDMYGRPE--VKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 2433
             F+ S   EDE+R+V+S + K+YE+L+ I+KNLKNHK  +DI  VL DFE LTK ++KA K ++ +GV KFYIR +AELE+F N  W N K     N+ KSLA LRQ+++KYNK++E  I  FREN ++YP +L+ E+  E       +    + +K      K +  +   D   +S +S+SED+E  ELYKN+PAARFLK            ++K+K+K+E++++ +++     + D +GWT VD  G+PE   ++F  +EEIT ES+L K+   ++GR  K+ QR+ Q ++L+QL  +VV++ FG G Q+K+++S  S LLQY  + +N C+ +E W +I+     ++DIL  N N+++++ + +E+SE    PPY + GCII   EH++DEYTKIL   D  +    +Y EKL+FETK+  LC+ ++ YL  K Y  +D CR Y+R++EH+YYRFD      E +       SY+EM+ L  +I  KD+TDRLRTRA+LCHIYYLALHD+W+EARDMMAMS L N IDR+DASTQIL+NR TVQLGLCAFR+G IK++HQALA+LQGSGR+KE+LAQG   NR E T +E  REK  L PYH+HIN++++EC YLVSAML+DVNHC     DGRR MISRNFH+VLK+S+R TL G P+ +++HVVAASKALF GDW+    +I + KM   VW LF     +K ++++KIK+E+++ FLL  +++ +SLSL +L + ++L    +HQ+ISKMIL  +L ASL++P+NCLIMHR+  S LQ  AL+LA++++QL ELNE+L
Sbjct:   69 VFESSDSEEDEKRVVRSGKVKRYEELENIIKNLKNHKKNRDINNVLIDFEILTKCFDKAKKIIDIEGVPKFYIRTVAELEDFINDLWDNHKKTLNKNNCKSLATLRQRLRKYNKEYETDIKLFRENPEVYPEDLIQEIKIEIDEEAAVECPHLEDRKHDQKYQKVEESESESDWGDNSTTSSSEDDEAKELYKNNPAARFLKRTDEKSTEKKKKEKKEKEKEERKKEKKRKQLSAGESDVDGWTAVDGSGKPEKLTRVFEKNEEITAESVLKKIDDIIQGRVVKRGQRQIQFEMLEQLHKIVVDQNFGPGFQIKLIISCTSFLLQYN-NKTNSCLKIEQWNKIMCNVSALLDILLNNVNNVTLKINVLEESENLLDPPYRLHGCIINLFEHMDDEYTKILQNIDARAP---DYIEKLQFETKVFELCTKLNRYLEMKEYSSNDICRAYLRKVEHMYYRFDYNFKWDESLSDHALSESYQEMKSLCRYILSKDQTDRLRTRAMLCHIYYLALHDHWYEARDMMAMSALQNSIDRSDASTQILYNRATVQLGLCAFRKGFIKDSHQALADLQGSGRLKELLAQGIAPNRYERTKDEENREKARLLPYHQHINLELMECVYLVSAMLSDVNHCLTHYPDGRRRMISRNFHHVLKSSERQTLVGSPETVRDHVVAASKALFVGDWQNTVKNIVNPKMNSKVWDLFHESSAVKQMLIEKIKMEALRTFLLGHSSICDSLSLSFLEKQFDLEIKIIHQIISKMILMDELMASLNDPTNCLIMHRSEPSKLQAMALRLAERVNQLGELNERL 869

[Close]

Query:   79 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXX-XXXXXLRQKIKKYNKDFEAQIADFRENSDLYXXXXXXXXXXXXXXXXXXX---EDPKKVSTLKDKXXXXXXXXXXXXXXXXXXXXXXXXXELYKNDPAARFLK--------SHTSXXXXXXXXXXXXXXXXXXXXXXXXXDNGWTTVDMYGRPE--VKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 2433
             F+ S   EDE+R+V+S + K+YE+L+ I+KNLKNHK  +DI  VL DFE LTK ++KA K ++ +GV KFYIR +AELE+F N  W N K     N+ KSLA LRQ+++KYNK++E  I  FREN ++YP +L+ E+  E       +    + +K      K +  +   D   +S +S+SED+E  ELYKN+PAARFLK            ++K+K+K+E++++ +++     + D +GWT VD  G+PE   ++F  +EEIT ES+L K+   ++GR  K+ QR+ Q ++L+QL  +VV++ FG G Q+K+++S  S LLQY  + +N C+ +E W +I+     ++DIL  N N+++++ + +E+SE    PPY + GCII   EH++DEYTKIL   D  +    +Y EKL+FETK+  LC+ ++ YL  K Y  +D CR Y+R++EH+YYRFD      E +       SY+EM+ L  +I  KD+TDRLRTRA+LCHIYYLALHD+W+EARDMMAMS L N IDR+DASTQIL+NR TVQLGLCAFR+G IK++HQALA+LQGSGR+KE+LAQG   NR E T +E  REK  L PYH+HIN++++EC YLVSAML+DVNHC     DGRR MISRNFH+VLK+S+R TL G P+ +++HVVAASKALF GDW+    +I + KM   VW LF     +K ++++KIK+E+++ FLL  +++ +SLSL +L + ++L    +HQ+ISKMIL  +L ASL++P+NCLIMHR+  S LQ  AL+LA++++QL ELNE+L
Sbjct:   56 VFESSDSEEDEKRVVRSGKVKRYEELENIIKNLKNHKKNRDINNVLIDFEILTKCFDKAKKIIDIEGVPKFYIRTVAELEDFINDLWDNHKKTLNKNNCKSLATLRQRLRKYNKEYETDIKLFRENPEVYPEDLIQEIKIEIDEEAAVECPHLEDRKHDQKYQKVEESESESDWGDNSTTSSSEDDEAKELYKNNPAARFLKRTDEKSTEKKKKEKKEKEKEERKKEKKRKQLSAGESDVDGWTAVDGSGKPEKLTRVFEKNEEITAESVLKKIDDIIQGRVVKRGQRQIQFEMLEQLHKIVVDQNFGPGFQIKLIISCTSFLLQYN-NKTNSCLKIEQWNKIMCNVSALLDILLNNVNNVTLKINVLEESENLLDPPYRLHGCIINLFEHMDDEYTKILQNIDARAP---DYIEKLQFETKVFELCTKLNRYLEMKEYSSNDICRAYLRKVEHMYYRFDYNFKWDESLSDHALSESYQEMKSLCRYILSKDQTDRLRTRAMLCHIYYLALHDHWYEARDMMAMSALQNSIDRSDASTQILYNRATVQLGLCAFRKGFIKDSHQALADLQGSGRLKELLAQGIAPNRYERTKDEENREKARLLPYHQHINLELMECVYLVSAMLSDVNHCLTHYPDGRRRMISRNFHHVLKSSERQTLVGSPETVRDHVVAASKALFVGDWQNTVKNIVNPKMNSKVWDLFHESSAVKQMLIEKIKMEALRTFLLGHSSICDSLSLSFLEKQFDLEIKIIHQIISKMILMDELMASLNDPTNCLIMHRSEPSKLQAMALRLAERVNQLGELNERL 856

[Close]

Query:   79 AFDDSSESEDERRIVKSAREKKYEDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYIRVIAELEEFTNTSWXXXXXXXXXXX-XXXXXLRQKIKKYNKDFEAQIADFRENSDLYXXXXXXXXXXXXXXXXXXX---EDPKKVSTLKDKXXXXXXXXXXXXXXXXXXXXXXXXXELYKNDPAARFLK--------SHTSXXXXXXXXXXXXXXXXXXXXXXXXXDNGWTTVDMYGRPE--VKLFADDEEITKESILTKMRSELEGRTSKKDQRKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSLENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIGFLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKKNYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIP------SYKEMRKLSGFITLKDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPEELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKMKKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIYELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLADKISQLAELNEKL 2433
             F+ S   EDE+R+V+S + K+YE+L+ I+KNLKNHK  +DI  VL DFE LTK ++KA K ++ +GV KFYIR +AELE+F N  W N K     N+ KSLA LRQ+++KYNK++E  I  FREN ++YP +L+ E+  E       +    + +K      K +  +   D   +S +S+SED+E  ELYKN+PAARFLK            ++K+K+K+E++++ +++     + D +GWT VD  G+PE   ++F  +EEIT ES+L K+   ++GR  K+ QR+ Q ++L+QL  +VV++ FG G Q+K+++S  S LLQY  + +N C+ +E W +I+     ++DIL  N N+++++ + +E+SE    PPY + GCII   EH++DEYTKIL   D  +    +Y EKL+FETK+  LC+ ++ YL  K Y  +D CR Y+R++EH+YYRFD      E +       SY+EM+ L  +I  KD+TDRLRTRA+LCHIYYLALHD+W+EARDMMAMS L N IDR+DASTQIL+NR TVQLGLCAFR+G IK++HQALA+LQGSGR+KE+LAQG   NR E T +E  REK  L PYH+HIN++++EC YLVSAML+DVNHC     DGRR MISRNFH+VLK+S+R TL G P+ +++HVVAASKALF GDW+    +I + KM   VW LF     +K ++++KIK+E+++ FLL  +++ +SLSL +L + ++L    +HQ+ISKMIL  +L ASL++P+NCLIMHR+  S LQ  AL+LA++++QL ELNE+L
Sbjct:   41 VFESSDSEEDEKRVVRSGKVKRYEELENIIKNLKNHKKNRDINNVLIDFEILTKCFDKAKKIIDIEGVPKFYIRTVAELEDFINDLWDNHKKTLNKNNCKSLATLRQRLRKYNKEYETDIKLFRENPEVYPEDLIQEIKIEIDEEAAVECPHLEDRKHDQKYQKVEESESESDWGDNSTTSSSEDDEAKELYKNNPAARFLKRTDEKSTEKKKKEKKEKEKEERKKEKKRKQLSAGESDVDGWTAVDGSGKPEKLTRVFEKNEEITAESVLKKIDDIIQGRVVKRGQRQIQFEMLEQLHKIVVDQNFGPGFQIKLIISCTSFLLQYN-NKTNSCLKIEQWNKIMCNVSALLDILLNNVNNVTLKINVLEESENLLDPPYRLHGCIINLFEHMDDEYTKILQNIDARAP---DYIEKLQFETKVFELCTKLNRYLEMKEYSSNDICRAYLRKVEHMYYRFDYNFKWDESLSDHALSESYQEMKSLCRYILSKDQTDRLRTRAMLCHIYYLALHDHWYEARDMMAMSALQNSIDRSDASTQILYNRATVQLGLCAFRKGFIKDSHQALADLQGSGRLKELLAQGIAPNRYERTKDEENREKARLLPYHQHINLELMECVYLVSAMLSDVNHCLTHYPDGRRRMISRNFHHVLKSSERQTLVGSPETVRDHVVAASKALFVGDWQNTVKNIVNPKMNSKVWDLFHESSAVKQMLIEKIKMEALRTFLLGHSSICDSLSLSFLEKQFDLEIKIIHQIISKMILMDELMASLNDPTNCLIMHRSEPSKLQAMALRLAERVNQLGELNERL 841

The following BLAST results are available for this feature:

BLAST of SMED30004178 vs. Ensembl Human
BLAST of SMED30004178 vs. Ensembl Celegans
BLAST of SMED30004178 vs. Ensembl Fly
BLAST of SMED30004178 vs. Ensembl Zebrafish
BLAST of SMED30004178 vs. Ensembl Xenopus
BLAST of SMED30004178 vs. Ensembl Mouse
BLAST of SMED30004178 vs. UniProt/SwissProt
BLAST of SMED30004178 vs. TrEMBL
BLAST of SMED30004178 vs. Ensembl Cavefish
BLAST of SMED30004178 vs. Ensembl Sea Lamprey
BLAST of SMED30004178 vs. Ensembl Yeast
BLAST of SMED30004178 vs. Ensembl Nematostella
BLAST of SMED30004178 vs. Ensembl Medaka
BLAST of SMED30004178 vs. Planmine SMEST

BLAST of SMED30004178 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
EIF3C	6.878e-127	38.46	eukaryotic translation initiation factor 3 subunit...	[more]
EIF3C	9.898e-127	38.46	eukaryotic translation initiation factor 3 subunit...	[more]
EIF3C	9.898e-127	38.46	eukaryotic translation initiation factor 3 subunit...	[more]
EIF3C	9.898e-127	38.46	eukaryotic translation initiation factor 3 subunit...	[more]
EIF3C	9.898e-127	38.46	eukaryotic translation initiation factor 3 subunit...	[more]

BLAST of SMED30004178 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
eif-3.C	4.452e-126	39.32	Eukaryotic translation initiation factor 3 subunit...	[more]
eif-3.C	4.452e-126	39.32	Eukaryotic translation initiation factor 3 subunit...	[more]
eif-3.C	4.452e-126	39.32	Eukaryotic translation initiation factor 3 subunit...	[more]

BLAST of SMED30004178 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
eIF3c	1.922e-132	39.30	gene:FBgn0034258 transcript:FBtr0086836	[more]
eIF3c	1.922e-132	39.30	gene:FBgn0034258 transcript:FBtr0340269	[more]

BLAST of SMED30004178 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
eif3c	2.210e-127	38.88	eukaryotic translation initiation factor 3, subuni...	[more]

BLAST of SMED30004178 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
tnip1	4.496e-125	38.15	TNFAIP3 interacting protein 1 [Source:Xenbase;Acc:...	[more]
tnip1	8.917e-124	37.41	TNFAIP3 interacting protein 1 [Source:Xenbase;Acc:...	[more]

BLAST of SMED30004178 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Eif3c	4.636e-125	38.22	eukaryotic translation initiation factor 3, subuni...	[more]
Eif3c	4.565e-23	37.20	eukaryotic translation initiation factor 3, subuni...	[more]

BLAST of SMED30004178 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|B4MRZ8\|EIF3C_DROWI	6.496e-137	39.76	Eukaryotic translation initiation factor 3 subunit...	[more]
sp\|Q17Q06\|EIF3C_AEDAE	8.320e-135	39.26	Eukaryotic translation initiation factor 3 subunit...	[more]
sp\|B4LNA1\|EIF3C_DROVI	1.584e-134	39.69	Eukaryotic translation initiation factor 3 subunit...	[more]
sp\|B4KN00\|EIF3C_DROMO	1.915e-134	39.69	Eukaryotic translation initiation factor 3 subunit...	[more]
sp\|B4J789\|EIF3C_DROGR	8.732e-134	39.18	Eukaryotic translation initiation factor 3 subunit...	[more]

BLAST of SMED30004178 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
E2F3W6	1.932e-167	56.41	Eukaryotic translation initiation factor 3 subunit...	[more]
K1P5V7	3.166e-143	41.79	Eukaryotic translation initiation factor 3 subunit...	[more]
A0A1J1IYL2	1.190e-141	41.54	Eukaryotic translation initiation factor 3 subunit...	[more]
A0A2T7PD49	2.009e-141	42.73	Eukaryotic translation initiation factor 3 subunit...	[more]
A0A1S3INZ7	4.155e-139	41.21	Eukaryotic translation initiation factor 3 subunit...	[more]

BLAST of SMED30004178 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
eif3c	2.219e-126	38.88	eukaryotic translation initiation factor 3 subunit...	[more]
eif3c	2.219e-126	38.88	eukaryotic translation initiation factor 3 subunit...	[more]
eif3c	3.996e-126	38.88	eukaryotic translation initiation factor 3 subunit...	[more]
eif3c	4.116e-126	38.88	eukaryotic translation initiation factor 3 subunit...	[more]

BLAST of SMED30004178 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30004178 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
NIP1	2.167e-47	25.93	eIF3c subunit of the eukaryotic translation initia...	[more]

BLAST of SMED30004178 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO41901	1.590e-122	38.45	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30004178 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
eif3c	9.133e-126	38.55	eukaryotic translation initiation factor 3 subunit...	[more]
eif3c	4.776e-125	38.55	eukaryotic translation initiation factor 3 subunit...	[more]

BLAST of SMED30004178 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000025475.1	0.000e+0	100.00	SMESG000025475.1	[more]
SMESG000025491.1	0.000e+0	48.70	SMESG000025491.1	[more]
SMESG000025491.1	0.000e+0	48.70	SMESG000025491.1	[more]
SMESG000025491.1	0.000e+0	48.70	SMESG000025491.1	[more]
SMESG000025491.1	0.000e+0	48.70	SMESG000025491.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004178 ID=SMED30004178|Name=SMED30004178|organism=Schmidtea mediterranea sexual|type=transcript|length=2596bp
TTTTTTTTCAAAAACCAAAATTTTATTAAAGAACACCAACTTGAATAACT
ATCAGTATTTCGGTTTCGAAGCATCTTGCAATTTCTCGTTTAACTCGGCC
AATTGAGAAATTTTGTCTGCGAGTTTCAGCGCTGCAATTTGTAAACCAGA
AGTTCGAGTTCTGTGCATTATTAGACAATTTGATGGCTCATCGAGAGAGG
CTTTTAATTTGCCATCGAGAATCATTTTGCTTATTAATTGATGGACTGAA
TGTTGACTCAATTCATAAATTTCCACAAGGTATTTTAGACTCAACGAGTT
AAATACATTGGCCTTGCTTAATAAAAAAGCTTTCATTGATTCCAACTTTA
TTTTATCGACTATTATTGTCTTAAGCTCTTCAAAATTTCTAAAAAGAGCC
CATACGGACTTTTTCATTTTATCGTCAAATATATGATCTGCAGCAGTTTT
CCAGTCGCCGTTAAACAAAGCTTTTGAGGCAGCAACAACATGTTCCTTCA
AGTTATCTGGTCGCCCATTAAGAGTGTTTCTGTCACTATTTTTCAATACG
TAGTGGAAATTTCTGCTGATCATCACTCGCCGACCATCAGCTTGTTGCAT
GTGACAATGATTCACATCTGTTAACATTGCAGATACAAGATAAGCACACT
CAATCACATCGACATTTATGTGTTTGTGATAGGGCTGGAGAAACATTTTC
TCTCGAAATAATTCCTCTGGTGTAGCTTCATTTCTGTTTAATCGAGTTCC
TTGGGCTAAAATTTCCTTAACTCTACCAGACCCTTGGAGTTCGGCCAAAG
CTTGATGAGCTTCCTTGATGCACCCACGTCGGAAAGCACACAGTCCTAAC
TGCACAGTCACCCGATTGAACAATATCTGAGTTGATGCATCTGCCCGGTC
TATATGATTAGTGAGTCCAGACATGGCCATCATGTCCCGCGCCTCAAACC
AATAATCGTGAAGGGCGAGATAGTATATATGACACAAAATCGCTCTAGTT
CTCAATCGATCGGTTTCGTCTTTCAATGTTATAAATCCTGACAATTTTCT
CATTTCCTTATAACTAGGAATTTCCTCTTTAATTCCTACCGTGGGATCGA
ATCTATAATAAATATGTTCCAATTGTCGCATATACACTCGACATTTGTCA
TCATCACCGTAATTTTTCTTATTCAGATATTCACTAACTAAACTACAAAG
AGACATAATTTTTGTTTCAAAGCGCAACTTTTCTCGATATTCGACTTCTT
TGTCTGATGAGAAATCATGACACGTAAGAATTTTTGTGTATTCATCCTCT
AAATGCTCGAGAAATCCGATAATACATCCACTGACCATATAAGGTGGGAA
ATCAAATTTTTCACTATCTTCCATATCACTAGATCTCATAGAAATGTCGT
TGGGATTCCTGTTCAATATATCCACAATGTCGAATGTGATCTCAAGAATT
CTTTTCCAATTTTCAAGACTCATGCACGGATTTGATGCACTACATTTGTA
TTGCAACAACAGAGAAACGAGTGAAACCATAATCTTGACTTGCAAACCTA
TTCCAAATCCTCGATTGACAACAAGATCGATTAATTGTTGCAAAATATCG
ACTTGAGATTTTCGCTGGTCCTTTTTACTTGTTCTACCTTCAAGTTCAGA
TCTCATTTTGGTGAGAATAGATTCTTTTGTTATTTCTTCATCGTCTGCAA
ATAATTTTACCTCTGGTCGACCGTACATGTCTACAGTTGTCCATCCATTG
TCATCGTCTTTATCTTTCCTCTTATACTCTTTTTGATCTTTTTCCCGTTT
CTCTTTTTTCTTTTTATCTTTCTGTTTACTAGTATGAGATTTCAAAAAGC
GAGCAGCTGGATCGTTTTTATATAATTCGATTTCTTCTTCGTCTTCTGAC
GTAGAAGATTCACTAGAACTATCCTGATCCCACATTTCATCCTCAGAATC
GGATTTATCTTTAAGAGTTGAAACCTTTTTAGGGTCTTCTTGTTTCTTTT
CAACAGCTTTTTCTTCCTCAATTACCTCCGGAACTAATTCTAATGGATAT
AAATCACTATTTTCACGAAAATCAGCAATCTGAGCTTCGAAATCTTTGTT
GTATTTCTTGATTTTTTGACGAAGCGCCGCTAAACTTTTTGAATTATTTT
TGCTAAGATTTTTCTTATTTGCCCAAGAGGTATTAGTAAACTCTTCCAAC
TCAGCAATCACTCTGATGTAAAATTTTAAAACGCCATCAGCCTCCATTGT
TTTATGAGCTTTCTCGTAACTCTTTGTTAATTCTTCAAAATCCTCTAAAA
CCTTAGTAATATCTTGGATATTTTTGTGATTTTTTAAATTTTTAACAATC
CCTTGCAAATCTTCATACTTTTTTTCTCTAGCGGATTTTACTATTCGTCT
CTCGTCCTCGCTTTCACTTGAATCGTCAAAAGCAATAGGCCTTTCAACTA
CAACTTCTTCCTCAGAATCACTAGAATCCGAATCGCTGCTTAGAGCATGA
AAAAATCGACTCATCGTGTGTGAAAATTTAAATTAAAAATTAATATTAAC
AGTTAAAACAAATCATAACGTAAATCATAAAAAAATTCACTTTTCG

protein sequence of SMED30004178-orf-1

>SMED30004178-orf-1 ID=SMED30004178-orf-1|Name=SMED30004178-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=821bp
MSRFFHALSSDSDSSDSEEEVVVERPIAFDDSSESEDERRIVKSAREKKY
EDLQGIVKNLKNHKNIQDITKVLEDFEELTKSYEKAHKTMEADGVLKFYI
RVIAELEEFTNTSWANKKNLSKNNSKSLAALRQKIKKYNKDFEAQIADFR
ENSDLYPLELVPEVIEEEKAVEKKQEDPKKVSTLKDKSDSEDEMWDQDSS
SESSTSEDEEEIELYKNDPAARFLKSHTSKQKDKKKKEKREKDQKEYKRK
DKDDDNGWTTVDMYGRPEVKLFADDEEITKESILTKMRSELEGRTSKKDQ
RKSQVDILQQLIDLVVNRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMSL
ENWKRILEITFDIVDILNRNPNDISMRSSDMEDSEKFDFPPYMVSGCIIG
FLEHLEDEYTKILTCHDFSSDKEVEYREKLRFETKIMSLCSLVSEYLNKK
NYGDDDKCRVYMRQLEHIYYRFDPTVGIKEEIPSYKEMRKLSGFITLKDE
TDRLRTRAILCHIYYLALHDYWFEARDMMAMSGLTNHIDRADASTQILFN
RVTVQLGLCAFRRGCIKEAHQALAELQGSGRVKEILAQGTRLNRNEATPE
ELFREKMFLQPYHKHINVDVIECAYLVSAMLTDVNHCHMQQADGRRVMIS
RNFHYVLKNSDRNTLNGRPDNLKEHVVAASKALFNGDWKTAADHIFDDKM
KKSVWALFRNFEELKTIIVDKIKLESMKAFLLSKANVFNSLSLKYLVEIY
ELSQHSVHQLISKMILDGKLKASLDEPSNCLIMHRTRTSGLQIAALKLAD
KISQLAELNEKLQDASKPKY*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR027516	EIF3C
IPR036390	WH_DNA-bd_sf
IPR000717	PCI_dom
IPR011991	WHTH_DNA-bd_dom
IPR008905	EIF3C_N_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0005515	protein binding
GO:0031369	translation initiation factor binding
GO:0003743	translation initiation factor activity

Vocabulary: **biological process**
Term	Definition
GO:0006413	translational initiation

Vocabulary: **cellular component**
Term	Definition
GO:0005852	eukaryotic translation initiation factor 3 complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93
None	No IPR available	COILS	Coil	Coil	coord: 791..815
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	SMART	SM00753	PINT	coord: 717..805 e-value: 1.5E-4 score: 31.1
None	No IPR available	GENE3D	G3DSA:1.25.40.570		coord: 718..817 e-value: 3.3E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..38
None	No IPR available	PANTHER	PTHR13937:SF0	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C-RELATED	coord: 1..816
IPR000717	Proteasome component (PCI) domain	SMART	SM00088	PINT_4	coord: 717..805 e-value: 1.5E-4 score: 31.1
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 652..785 e-value: 5.5E-10 score: 39.7
IPR000717	Proteasome component (PCI) domain	PROSITE	PS50250	PCI	coord: 612..788 score: 14.509
IPR008905	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	PFAM	PF05470	eIF-3c_N	coord: 29..636 e-value: 2.1E-133 score: 445.8
IPR027516	Eukaryotic translation initiation factor 3 subunit C	PANTHER	PTHR13937	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	coord: 1..816
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 726..787

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SMED30004178

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

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