WD_REPEATS_REGION domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30004137 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: THOC6 (THO complex 6 [Source:HGNC Symbol;Acc:HGNC:28369]) HSP 1 Score: 103.605 bits (257), Expect = 2.319e-24 Identity = 84/353 (23.80%), Postives = 157/353 (44.48%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILR-----DEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + AW W+++ C + ++ L + + + + E +I+ G D +H + + G+ + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ T P+ A + +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLHTMDL-ETGTFTRV--LRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSS------------TPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTAAGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: THOC6 (THO complex 6 [Source:HGNC Symbol;Acc:HGNC:28369]) HSP 1 Score: 100.138 bits (248), Expect = 2.366e-23 Identity = 81/337 (24.04%), Postives = 149/337 (44.21%), Query Frame = 1 Query: 85 YSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + AW W+++ C + ++ L + + + + E +I+ G D +H + + G+ + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ + P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 4 FSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLHTMDL-ETGTFTRV--LRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTIFPI-RAPQKH------VTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTAAGNSCRVDVFTNLGYRA--FSL 315
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: THOC6 (THO complex 6 [Source:HGNC Symbol;Acc:HGNC:28369]) HSP 1 Score: 100.138 bits (248), Expect = 2.366e-23 Identity = 81/337 (24.04%), Postives = 149/337 (44.21%), Query Frame = 1 Query: 85 YSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + AW W+++ C + ++ L + + + + E +I+ G D +H + + G+ + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ + P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 4 FSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLHTMDL-ETGTFTRV--LRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTIFPI-RAPQKH------VTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTAAGNSCRVDVFTNLGYRA--FSL 315
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: THOC6 (THO complex 6 [Source:HGNC Symbol;Acc:HGNC:28369]) HSP 1 Score: 92.4337 bits (228), Expect = 1.137e-20 Identity = 72/284 (25.35%), Postives = 124/284 (43.66%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRV 876 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + AW W+++ C + ++ L + + + + E +I+ G D +H + + G+ + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ + P +D V+ A GNS RV Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLHTMDL-ETGTFTRV--LRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTIFPI-RAPQKHV-----TFYQDLVLTAAGNSCRV 281
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Match: thoc6 (gene:FBgn0036263 transcript:FBtr0076019) HSP 1 Score: 83.5741 bits (205), Expect = 1.140e-17 Identity = 72/306 (23.53%), Postives = 134/306 (43.79%), Query Frame = 1 Query: 49 KMKDVMKSHLINYSMTFSPCQNYLAISNNFNSI---KILNLNDGTES----LIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKP-----TDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAAT 930 K KD+ +++ + S + YL N F I +I L+ G+E L + I + L+ + IY +W++ E ++ ++ ++ +P+ + V + SM+++ + I+ GC DG I+ + ++G I+ Y+ + + V + + SG DGTVR W +Q + +E K+P + RP G I +A + DW+LCGG + S++++R+ V + DDC V+ GG + V + L+G L + I + T Sbjct: 2 KQKDLKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIKELDKGSEEPPGKLKIFPQGSDVDINYLAFHRDFLIVGAVGLIYGLEWNEEEESLATKRS-----WEVKIPMQVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQVSL-EDGRIQ--REYRGHTDYVHSVVGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVN---EDWLLCGGGPKASIFHLRSMESTCVFSFPGRVHLCDFVDDC------------VLIGGEHNHVQSYTLNGVLQANIPVEHT 284
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Match: thoc6 (gene:FBgn0036263 transcript:FBtr0333384) HSP 1 Score: 83.5741 bits (205), Expect = 1.140e-17 Identity = 72/306 (23.53%), Postives = 134/306 (43.79%), Query Frame = 1 Query: 49 KMKDVMKSHLINYSMTFSPCQNYLAISNNFNSI---KILNLNDGTES----LIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKP-----TDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAAT 930 K KD+ +++ + S + YL N F I +I L+ G+E L + I + L+ + IY +W++ E ++ ++ ++ +P+ + V + SM+++ + I+ GC DG I+ + ++G I+ Y+ + + V + + SG DGTVR W +Q + +E K+P + RP G I +A + DW+LCGG + S++++R+ V + DDC V+ GG + V + L+G L + I + T Sbjct: 2 KQKDLKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIKELDKGSEEPPGKLKIFPQGSDVDINYLAFHRDFLIVGAVGLIYGLEWNEEEESLATKRS-----WEVKIPMQVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQVSL-EDGRIQ--REYRGHTDYVHSVVGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVN---EDWLLCGGGPKASIFHLRSMESTCVFSFPGRVHLCDFVDDC------------VLIGGEHNHVQSYTLNGVLQANIPVEHT 284
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Match: thoc6 (gene:FBgn0036263 transcript:FBtr0346911) HSP 1 Score: 83.5741 bits (205), Expect = 1.140e-17 Identity = 72/306 (23.53%), Postives = 134/306 (43.79%), Query Frame = 1 Query: 49 KMKDVMKSHLINYSMTFSPCQNYLAISNNFNSI---KILNLNDGTES----LIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKP-----TDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAAT 930 K KD+ +++ + S + YL N F I +I L+ G+E L + I + L+ + IY +W++ E ++ ++ ++ +P+ + V + SM+++ + I+ GC DG I+ + ++G I+ Y+ + + V + + SG DGTVR W +Q + +E K+P + RP G I +A + DW+LCGG + S++++R+ V + DDC V+ GG + V + L+G L + I + T Sbjct: 2 KQKDLKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIKELDKGSEEPPGKLKIFPQGSDVDINYLAFHRDFLIVGAVGLIYGLEWNEEEESLATKRS-----WEVKIPMQVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQVSL-EDGRIQ--REYRGHTDYVHSVVGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVN---EDWLLCGGGPKASIFHLRSMESTCVFSFPGRVHLCDFVDDC------------VLIGGEHNHVQSYTLNGVLQANIPVEHT 284
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:100004014]) HSP 1 Score: 105.531 bits (262), Expect = 2.170e-25 Identity = 82/274 (29.93%), Postives = 127/274 (46.35%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEV 846 M V H+ +S +FSPC YLA NN+ I + +L+ D +E K + TA ++++ + S L+ + I AW W+++ ++ L I +I +M IN D + +G D NIH I+D + + K + + + CL+ K + ++SG DG VR WD R ++ IE K E RP+ G I+ +ATD SDW+LCGG LSLW++R+ V PLS R+ V Sbjct: 1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGEISAWSWAELIKKSTKAAWTRKPNYETSLEIP-------EINAMIINPKDNNLIVGGGDNNIH---IMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRSMSPTSV------------FPLSGCQREAV 249
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:100004014]) HSP 1 Score: 105.531 bits (262), Expect = 2.170e-25 Identity = 82/274 (29.93%), Postives = 127/274 (46.35%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEV 846 M V H+ +S +FSPC YLA NN+ I + +L+ D +E K + TA ++++ + S L+ + I AW W+++ ++ L I +I +M IN D + +G D NIH I+D + + K + + + CL+ K + ++SG DG VR WD R ++ IE K E RP+ G I+ +ATD SDW+LCGG LSLW++R+ V PLS R+ V Sbjct: 1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGEISAWSWAELIKKSTKAAWTRKPNYETSLEIP-------EINAMIINPKDNNLIVGGGDNNIH---IMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRSMSPTSV------------FPLSGCQREAV 249
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:100004014]) HSP 1 Score: 105.531 bits (262), Expect = 2.170e-25 Identity = 82/274 (29.93%), Postives = 127/274 (46.35%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEV 846 M V H+ +S +FSPC YLA NN+ I + +L+ D +E K + TA ++++ + S L+ + I AW W+++ ++ L I +I +M IN D + +G D NIH I+D + + K + + + CL+ K + ++SG DG VR WD R ++ IE K E RP+ G I+ +ATD SDW+LCGG LSLW++R+ V PLS R+ V Sbjct: 1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGEISAWSWAELIKKSTKAAWTRKPNYETSLEIP-------EINAMIINPKDNNLIVGGGDNNIH---IMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRSMSPTSV------------FPLSGCQREAV 249
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:100004014]) HSP 1 Score: 90.1225 bits (222), Expect = 6.690e-20 Identity = 78/275 (28.36%), Postives = 122/275 (44.36%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDK-SPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEV 846 M V H+ +S +FSPC YLA NN+ I + +L+ D +E K + TA ++++ + S L+ + I AW W+++ ++ L I +I +M IN D + +G D NIH I+D + + K + + + CL+ K + ++SG DG VR W L + E RP+ G I+ +ATD SDW+LCGG LSLW++R+ V PLS R+ V Sbjct: 1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGEISAWSWAELIKKSTKAAWTRKPNYETSLEIP-------EINAMIINPKDNNLIVGGGDNNIH---IMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWGHIDVSFSLTVSFFHWGQECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRSMSPTSV------------FPLSGCQREAV 250
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:100004014]) HSP 1 Score: 90.1225 bits (222), Expect = 6.690e-20 Identity = 78/275 (28.36%), Postives = 122/275 (44.36%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDK-SPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEV 846 M V H+ +S +FSPC YLA NN+ I + +L+ D +E K + TA ++++ + S L+ + I AW W+++ ++ L I +I +M IN D + +G D NIH I+D + + K + + + CL+ K + ++SG DG VR W L + E RP+ G I+ +ATD SDW+LCGG LSLW++R+ V PLS R+ V Sbjct: 1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGEISAWSWAELIKKSTKAAWTRKPNYETSLEIP-------EINAMIINPKDNNLIVGGGDNNIH---IMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWGHIDVSFSLTVSFFHWGQECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRSMSPTSV------------FPLSGCQREAV 250
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: THOC6 (THO complex 6 [Source:NCBI gene;Acc:100498236]) HSP 1 Score: 101.293 bits (251), Expect = 1.186e-23 Identity = 89/342 (26.02%), Postives = 153/342 (44.74%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSS--------STTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFT-CGWGAYVELYSDIGYRKKIFSL 1068 H+ +S FSPC YL NN I + +L+ S K S + + IY++ + L+ + + W W+DI C+Q L+ +P + +I SM +NE D + + NIH +D S + + + + CL + + +SG DGTVR WD R + +IE K E RP+ G I+ + TD SDW++CGG +LSLW++R+ V T P ++ + ++++ G V ++G + ++I + V+ + S ++A N T G G ++++++ YR FSL Sbjct: 17 HMTVFSQCFSPCGKYLVAGNNLGQIGVFSLSAALSSEAKELSKQPVAIFQAHSGPIYSLISTERHLISSGGNEVKGWNWNDIHKKGCTQ------LWTRCIPSRSNLES-PEINSMILNEKDNSLLLAGGTCNIH---SMDLESGTFTMALEGHEDYIHCLALREQQRECVSGGEDGTVRIWDLRNGAQTHKIEVYKYEECARPQYGKWISCLTTD---SDWMVCGGGPKLSLWHLRS-----VTPTTIFPLNES--QQQVMFYQDMILCAGQGPYVNHCQINGDIKAQIP-STPRCVYSL-----SVNEASQENKVLTAAGSGPKIDVFTNFRYRA--FSL 330
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: THOC6 (THO complex 6 [Source:NCBI gene;Acc:100498236]) HSP 1 Score: 101.293 bits (251), Expect = 1.377e-23 Identity = 89/342 (26.02%), Postives = 153/342 (44.74%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSS--------STTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFT-CGWGAYVELYSDIGYRKKIFSL 1068 H+ +S FSPC YL NN I + +L+ S K S + + IY++ + L+ + + W W+DI C+Q L+ +P + +I SM +NE D + + NIH +D S + + + + CL + + +SG DGTVR WD R + +IE K E RP+ G I+ + TD SDW++CGG +LSLW++R+ V T P ++ + ++++ G V ++G + ++I + V+ + S ++A N T G G ++++++ YR FSL Sbjct: 15 HMTVFSQCFSPCGKYLVAGNNLGQIGVFSLSAALSSEAKELSKQPVAIFQAHSGPIYSLISTERHLISSGGNEVKGWNWNDIHKKGCTQ------LWTRCIPSRSNLES-PEINSMILNEKDNSLLLAGGTCNIH---SMDLESGTFTMALEGHEDYIHCLALREQQRECVSGGEDGTVRIWDLRNGAQTHKIEVYKYEECARPQYGKWISCLTTD---SDWMVCGGGPKLSLWHLRS-----VTPTTIFPLNES--QQQVMFYQDMILCAGQGPYVNHCQINGDIKAQIP-STPRCVYSL-----SVNEASQENKVLTAAGSGPKIDVFTNFRYRA--FSL 328
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: THOC6 (THO complex 6 [Source:NCBI gene;Acc:100498236]) HSP 1 Score: 101.293 bits (251), Expect = 1.832e-23 Identity = 89/342 (26.02%), Postives = 153/342 (44.74%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSS--------STTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFT-CGWGAYVELYSDIGYRKKIFSL 1068 H+ +S FSPC YL NN I + +L+ S K S + + IY++ + L+ + + W W+DI C+Q L+ +P + +I SM +NE D + + NIH +D S + + + + CL + + +SG DGTVR WD R + +IE K E RP+ G I+ + TD SDW++CGG +LSLW++R+ V T P ++ + ++++ G V ++G + ++I + V+ + S ++A N T G G ++++++ YR FSL Sbjct: 36 HMTVFSQCFSPCGKYLVAGNNLGQIGVFSLSAALSSEAKELSKQPVAIFQAHSGPIYSLISTERHLISSGGNEVKGWNWNDIHKKGCTQ------LWTRCIPSRSNLES-PEINSMILNEKDNSLLLAGGTCNIH---SMDLESGTFTMALEGHEDYIHCLALREQQRECVSGGEDGTVRIWDLRNGAQTHKIEVYKYEECARPQYGKWISCLTTD---SDWMVCGGGPKLSLWHLRS-----VTPTTIFPLNES--QQQVMFYQDMILCAGQGPYVNHCQINGDIKAQIP-STPRCVYSL-----SVNEASQENKVLTAAGSGPKIDVFTNFRYRA--FSL 349
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: THOC6 (THO complex 6 [Source:NCBI gene;Acc:100498236]) HSP 1 Score: 95.5153 bits (236), Expect = 1.584e-21 Identity = 88/343 (25.66%), Postives = 153/343 (44.61%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSS--------STTASIYNIGNCGSLLVGTSDCYIYAWKWSDI-EINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFT-CGWGAYVELYSDIGYRKKIFSL 1068 H+ +S FSPC YL NN I + +L+ S K S + + IY++ + L+ + + W W+DI + N + + D F + + +I SM +NE D + + NIH +D S + + + + CL + + +SG DGTVR WD R + +IE K E RP+ G I+ + TD SDW++CGG +LSLW++R+ V T P ++ + ++++ G V ++G + ++I + V+ + S ++A N T G G ++++++ YR FSL Sbjct: 29 HMTVFSQCFSPCGKYLVAGNNLGQIGVFSLSAALSSEAKELSKQPVAIFQAHSGPIYSLISTERHLISSGGNEVKGWNWNDIHKKNQKALFQSADFFFLSF----RSNLESPEINSMILNEKDNSLLLAGGTCNIH---SMDLESGTFTMALEGHEDYIHCLALREQQRECVSGGEDGTVRIWDLRNGAQTHKIEVYKYEECARPQYGKWISCLTTD---SDWMVCGGGPKLSLWHLRS-----VTPTTIFPLNES--QQQVMFYQDMILCAGQGPYVNHCQINGDIKAQIP-STPRCVYSL-----SVNEASQENKVLTAAGSGPKIDVFTNFRYRA--FSL 346
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: THOC6 (THO complex 6 [Source:NCBI gene;Acc:100498236]) HSP 1 Score: 92.8189 bits (229), Expect = 9.912e-21 Identity = 87/342 (25.44%), Postives = 149/342 (43.57%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSS--------STTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFT-CGWGAYVELYSDIGYRKKIFSL 1068 H+ +S FSPC YL NN I + +L+ S K S + + IY++ + L+ + + W W+DI + L+S +I SM +NE D + + NIH +D S + + + + CL + + +SG DGTVR WD R + +IE K E RP+ G I+ + TD SDW++CGG +LSLW++R+ V T P ++ + ++++ G V ++G + ++I + V+ + S ++A N T G G ++++++ YR FSL Sbjct: 8 HMTVFSQCFSPCGKYLVAGNNLGQIGVFSLSAALSSEAKELSKQPVAIFQAHSGPIYSLISTERHLISSGGNEVKGWNWNDIH----KKVGNLESP---------------EINSMILNEKDNSLLLAGGTCNIH---SMDLESGTFTMALEGHEDYIHCLALREQQRECVSGGEDGTVRIWDLRNGAQTHKIEVYKYEECARPQYGKWISCLTTD---SDWMVCGGGPKLSLWHLRS-----VTPTTIFPLNES--QQQVMFYQDMILCAGQGPYVNHCQINGDIKAQIP-STPRCVYSL-----SVNEASQENKVLTAAGSGPKIDVFTNFRYRA--FSL 309
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Thoc6 (THO complex 6 [Source:MGI Symbol;Acc:MGI:2677480]) HSP 1 Score: 105.145 bits (261), Expect = 4.066e-25 Identity = 83/348 (23.85%), Postives = 151/348 (43.39%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + W W++I C + ++ L + + + + E +I+ G D +H +D + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ V P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 13 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVVFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLH---SMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPI-RAPQKH------VTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTASGNSCRVDVFTNLGYRA--FSL 335
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Thoc6 (THO complex 6 [Source:MGI Symbol;Acc:MGI:2677480]) HSP 1 Score: 105.145 bits (261), Expect = 5.017e-25 Identity = 83/348 (23.85%), Postives = 151/348 (43.39%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + W W++I C + ++ L + + + + E +I+ G D +H +D + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ V P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVVFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLH---SMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPI-RAPQKH------VTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTASGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Thoc6 (THO complex 6 [Source:MGI Symbol;Acc:MGI:2677480]) HSP 1 Score: 105.145 bits (261), Expect = 5.017e-25 Identity = 83/348 (23.85%), Postives = 151/348 (43.39%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + W W++I C + ++ L + + + + E +I+ G D +H +D + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ V P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVVFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLH---SMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPI-RAPQKH------VTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTASGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Thoc6 (THO complex 6 [Source:MGI Symbol;Acc:MGI:2677480]) HSP 1 Score: 105.145 bits (261), Expect = 5.017e-25 Identity = 83/348 (23.85%), Postives = 151/348 (43.39%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + W W++I C + ++ L + + + + E +I+ G D +H +D + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ V P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVVFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLH---SMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPI-RAPQKH------VTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTASGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5XJS5|THOC6_DANRE (THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.104e-24 Identity = 76/245 (31.02%), Postives = 120/245 (48.98%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRA 759 M V H+ +S +FSPC YLA NN+ I + +L+ D +E K + TA ++++ + S L+ + I AW W+++ ++ L I +I +M IN D + +G D NIH I+D + + K + + + CL+ K + ++SG DG VR WD R ++ IE K E RP+ G I+ +ATD SDW+LCGG LSLW++R+ Sbjct: 1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGEISAWSWAELIKKSTKAAWTRKPNYETSLEIP-------EINAMIINPKDNNLIVGGGDNNIH---IMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRS 232
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6AY87|THOC6_RAT (THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.285e-24 Identity = 83/348 (23.85%), Postives = 151/348 (43.39%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + W W++I C + ++ L + + + + E +I+ G D +H +D + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ V P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPMVTFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLH---TMDLETGTFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPI-RAPQKH------VTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTASGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5U4D9|THOC6_MOUSE (THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.509e-24 Identity = 83/348 (23.85%), Postives = 151/348 (43.39%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + W W++I C + ++ L + + + + E +I+ G D +H +D + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ V P +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVVFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLH---SMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPI-RAPQKH------VTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTASGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q86W42|THOC6_HUMAN (THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.114e-23 Identity = 84/353 (23.80%), Postives = 157/353 (44.48%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILR-----DEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y++ + L+ D + AW W+++ C + ++ L + + + + E +I+ G D +H + + G+ + + + + + CL + + ++SG DG VR WD R +KE IE K E RP G I +ATD SDW++CGG L+LW++R+ T P+ A + +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 17 FQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPE-----INALLLVPKENSLILAGG--DCQLHTMDL-ETGTFTRV--LRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATD---SDWMVCGGGPALTLWHLRSS------------TPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPA---APECKVLTAAGNSCRVDVFTNLGYRA--FSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9VTV1|THOC6_DROME (THO complex subunit 6 OS=Drosophila melanogaster OX=7227 GN=thoc6 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.143e-16 Identity = 72/306 (23.53%), Postives = 134/306 (43.79%), Query Frame = 1 Query: 49 KMKDVMKSHLINYSMTFSPCQNYLAISNNFNSI---KILNLNDGTES----LIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKP-----TDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAAT 930 K KD+ +++ + S + YL N F I +I L+ G+E L + I + L+ + IY +W++ E ++ ++ ++ +P+ + V + SM+++ + I+ GC DG I+ + ++G I+ Y+ + + V + + SG DGTVR W +Q + +E K+P + RP G I +A + DW+LCGG + S++++R+ V + DDC V+ GG + V + L+G L + I + T Sbjct: 2 KQKDLKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIKELDKGSEEPPGKLKIFPQGSDVDINYLAFHRDFLIVGAVGLIYGLEWNEEEESLATKRS-----WEVKIPMQVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQVSL-EDGRIQ--REYRGHTDYVHSVVGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVN---EDWLLCGGGPKASIFHLRSMESTCVFSFPGRVHLCDFVDDC------------VLIGGEHNHVQSYTLNGVLQANIPVEHT 284
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: H2ZE67 (WD_REPEATS_REGION domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.813e-29 Identity = 90/338 (26.63%), Postives = 164/338 (48.52%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSS------STTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 H Y+ +S C YLA +N+ I + N+ + E+ S+ + T +I+ + G L+ I WKWSDI S+ L K + NE C+ Y N+ D ++ G +G + + I +++ + + + + L G +LI+ DGTV+ WD R + I K+ ++ RP+ G I+ +A D ES +W++CGG AQ SLW++R++ + V++T +D + P + +D+ +I+ GN +Y W+++G+ +EI + N VF + ++ S N G + L++++GY K+ S+ Sbjct: 8 HTTIYATAYSSCGTYLACGDNYGQIAVFNITEAVEAHSLKSTPYVVFQAHTGAIHALVTSGKYLISAGFGPINGWKWSDIRNKRPSKSFTL----KDLQTNENESYNCVN----YANK-DSSIYTGADNGITYKWDI---NTLKCKGRFSGHTDYIHDLDTGSN-TLITASEDGTVKLWDTRTATCTNTISPCKNKQLNRPEFGQWISSVALD-ESGEWLVCGGSAQPSLWHLRSKSMATVLET----SDKSYTPNKLMFQDDEIISAGNKSIIYRWNVNGEKKAEIP-CSINRVFSLSFKQLFGS-VSNSLPLIASGNSYKLSLFTNLGYEGKLLSI 325
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A2B4SRY0 (THO complex subunit 6-like OS=Stylophora pistillata OX=50429 GN=thoc6 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.074e-28 Identity = 92/349 (26.36%), Postives = 168/349 (48.14%), Query Frame = 1 Query: 64 MKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSST-----------TASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLR--IETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 ++ H I +++ FSPC N+LA NNF I + ++ T +L +SS + IY++ + L+ I+ W+W +I + E + P + + ++ E + + GC D NI+L+ + ++G+ + T + + + CLT + K +SG DGTVR WD R +K + IE K+ ++ RP LGS I + D ES DW++CGG LS+W++R+ V+KT + SA+L D+++++ G+ V+ W ++G + + N VF + +KS + G+ A ++++++ GY+ F Sbjct: 36 LELHTIVFAVAFSPCGNFLAACNNFGQIAVFSI---TSALAPDASSDKKRPIIFFQGHSNPIYSLISTDKFLISGGSSEIHGWRWDEI----LDKTEAPSPAWTLQPPAARASLDIPETNALVFAEQEDTLFSGCGDNNIYLWDL-ESGTCK--NTLSGHWDYIQCLTLRTKHSQCVSGAEDGTVRLWDYR-TKGFMTDIIEPCKNEDIHRPHLGSWIGCVTVD-ESEDWLVCGGGPSLSVWHLRSMTCTSVLKTASSQQ-------SALLHDDLILSAGSEPTVFHWQINGDPKTHVP-CTPNSVFTMQINDKSPKN----KVLAVGGYSADIDVFTNFGYKALSFKF 360
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A3M6TAF6 (WD_REPEATS_REGION domain-containing protein OS=Pocillopora damicornis OX=46731 GN=pdam_00010925 PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 8.951e-28 Identity = 88/348 (25.29%), Postives = 165/348 (47.41%), Query Frame = 1 Query: 64 MKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSST-----------TASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECL-RIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 ++ H I +++ FSPC N+LA NNF I + ++ T +L +SS + IY++ + L+ I+ W+W +I + E + P + + ++ +E + + GC D NI+++ + ++G+ + T +++ + CLT + K +SG DGTVR WD R IE K+ ++ RP LGS I +A D E DW++CGG LS+W++R+ V+KT + SA+ D+++++ G+ V+ W ++G + + N VF + ++S + G A ++++++ GY+ F Sbjct: 12 LELHTIVFAVAFSPCGNFLAACNNFGQIAVFSI---TSALAPDASSDKKRPVIFFQGHSNPIYSLISTDKFLISGGSSEIHGWRWDEI----LDKTEAPSPAWTLQPPAARASLDIPETNALVFSEQEDTLFSGCGDNNIYMWDL-ESGTCK--NTLSGHSDYIQCLTLRTKHGQCVSGAEDGTVRLWDYRTKGSMTDMIEPCKNEDIHRPHLGSWIGCVAVD-EGEDWLVCGGGPSLSVWHLRSMNCTSVLKTASSQQ-------SALFHDDLILSAGSEPTVFHWQINGDPKTHVP-CTPNSVFTMQINDQSPKN----KVLAVGGCSADIDVFTNFGYKALSFKF 336
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A7SWJ5 (Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g135342 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.283e-27 Identity = 83/341 (24.34%), Postives = 160/341 (46.92%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDG--------TESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 H + + FSPC N+ A +NNF I + +L+ + + IY++ + + L+ I W+W+D+ + L+ P ++ + + ++ +E D ++ GC D NI+ + + + G+ + +T + + V CL + + +SG DGTVRFWD R + +I + ++RP+ G I +A D +S +W++CGG LS+W++R+ V+ T SA+ D+ +++ G+ V+ W ++G+L S++ + + VF L K+ D G +++ Y ++GY+ FSL Sbjct: 14 HTTVFDVAFSPCGNFFASANNFGDISLFSLSAALVPDAPPESRKPLLTFKGHKGPIYSLLSTKTFLISGGSTEISGWRWTDLMEQLVIPAWTLN-------PPSSNPMDIGETNALAFSEQDNVLLTGCGDNNIYSWDL-EAGTCK--STMSGHTDYVQCLALRQQHNQCMSGAEDGTVRFWDLRTAGMVNKISPSQEKNLQRPRFGPWIGCVAVD-DSEEWMVCGGGPSLSVWHLRSLSCTSVLDTPASCQQ------SALFHDDKILSAGSEPTVFQWQVNGELKSQVPCTSAS-VF-ALRVNKTSPDK---QILLVAGDSVHIDAYINLGYKAFSFSL 332
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: L8YEC9 (THO complex subunit 6 like protein OS=Tupaia chinensis OX=246437 GN=TREES_T100012531 PE=4 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.959e-25 Identity = 89/350 (25.43%), Postives = 157/350 (44.86%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTT--------ASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVV--MKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 + + + H+ +S + SPC +LA NN+ I I +L+ S K S +Y + + L+ D + AW W++I C + ++ L + V L ++ E +I+ G D +H +D + + + + + CL + +G ++SG DGTVR WD R +KE IE K E RP+ G I +ATD SDW++CGG L+LW++R+ V M+ K +++++ G V W LSG+L +++ ++ + L+++ + A C G V++++++GYR FSL Sbjct: 42 FQALQRLHMTVFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVTFQAHDGPVYCMVSTDRHLLSAGDGEVKAWLWAEILKKGCKELWRRQPPYRTSLEVPE--VNALLLVP---KENSLILAGG--DCQLH---TMDLETGAFTRALRGHTDYIHCLALRERGPEVLSGGEDGTVRLWDLRAAKEVQTIEVYKHEECARPQNGRWIGCLATD---SDWMVCGGGPALTLWHLRSSTPTTVFPMRAPQK---------HVTFYQDLILSAGQGPCVNQWQLSGELRAQVPGSSPGLLSLSLNQQPA---APECKVLTAAGNSCRVDVFTNLGYR--AFSL 364
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:103041053]) HSP 1 Score: 108.612 bits (270), Expect = 1.616e-26 Identity = 83/297 (27.95%), Postives = 133/297 (44.78%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLN--------DGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEI 915 M V H+ +S +FSPC +LA NN+ I I +L+ D ++ I ++ ++ + + + L+ + I AW W ++ +K+ L I +I +M IN D + +G D NIH I+D + + + + + + CL K + ++SG DG VR WD R + IE K E RP+ G I+ +ATD SDW+LCGG LSLW++R+ V P C A+ +V+ A G V L G + ++I Sbjct: 1 MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIAIFSLSAALSPDATDLSQKPILTFTAHEGPVFTLLSTDTHLLSAGNGEISAWSWVELTKRSTKAVWTRRPNYKSSLEIP-------EINAMIINPKDNSLIVGGGDNNIH---IMDMETGTFKSVLQGHTDYIHCLALKEREGEILSGGEDGAVRIWDSRTRQAVHCIEVFKYEECARPQFGKWISCLATD---SDWMLCGGGPSLSLWHLRSMSPTSVF-----PLAGC--QREAVFHQDVIFAVGEGPHVSHCLLGGSVKAQI 277
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Sea Lamprey
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:100004014]) HSP 1 Score: 107.457 bits (267), Expect = 6.835e-27 Identity = 83/335 (24.78%), Postives = 160/335 (47.76%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLN-----DGTESLIKCSSSTTA---SIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYS-LISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYR 1050 H+ +S +FSPC YLA N++ + + +L+ D TE K + TA +Y++ + LL+ + + AW WSD+ + +K + + +I ++ +NE D +++GC D N++ + ++G+ +L + + + V CL S ++SG DGTVR WD R +E K E R + G I +ATD SDW++CGG LSLW++R+ V + +A+ +++I+ G+ + ++G++ + I + +T V+ + + + ++ G +E+++++GYR Sbjct: 8 HMTVFSQSFSPCGKYLAAGNSYGRVAVFSLSLALGLDATEESRKPIYTFTAHESPVYSLVSTDRLLISAGNGLVKAWNWSDLIKKTAKEVWSKQPPYKMGVDVP-------EINALLLNEKDNSLYLGCGDCNVYNMDL-ESGTCKLF--LEGHTDYVHCLALRDHVSEVLSGGEDGTVRHWDVRTGNLVQCVEIFKYQECARSEFGKWIGCLATD---SDWMICGGGPALSLWHLRSLTPTTVFPLNGSHH-------AAMFHQDLIISAGSGHSIDHCQVNGEVRARIPV-STPSVYSL----QVNHNSSENKVLSAAGSSHKLEVFTNLGYR 317
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO31919 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWJ5]) HSP 1 Score: 119.013 bits (297), Expect = 8.689e-31 Identity = 83/341 (24.34%), Postives = 160/341 (46.92%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDG--------TESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLT-KGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 H + + FSPC N+ A +NNF I + +L+ + + IY++ + + L+ I W+W+D+ + L+ P ++ + + ++ +E D ++ GC D NI+ + + + G+ + +T + + V CL + + +SG DGTVRFWD R + +I + ++RP+ G I +A D +S +W++CGG LS+W++R+ V+ T SA+ D+ +++ G+ V+ W ++G+L S++ + + VF L K+ D G +++ Y ++GY+ FSL Sbjct: 14 HTTVFDVAFSPCGNFFASANNFGDISLFSLSAALVPDAPPESRKPLLTFKGHKGPIYSLLSTKTFLISGGSTEISGWRWTDLMEQLVIPAWTLN-------PPSSNPMDIGETNALAFSEQDNVLLTGCGDNNIYSWDL-EAGTCK--STMSGHTDYVQCLALRQQHNQCMSGAEDGTVRFWDLRTAGMVNKISPSQEKNLQRPRFGPWIGCVAVD-DSEEWMVCGGGPSLSVWHLRSLSCTSVLDTPASCQQ------SALFHDDKILSAGSEPTVFQWQVNGELKSQVPCTSAS-VF-ALRVNKTSPDK---QILLVAGDSVHIDAYINLGYKAFSFSL 332
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Medaka
Match: thoc6 (THO complex 6 [Source:NCBI gene;Acc:101174081]) HSP 1 Score: 75.8702 bits (185), Expect = 2.785e-15 Identity = 72/320 (22.50%), Postives = 127/320 (39.69%), Query Frame = 1 Query: 73 HLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWIL--CGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVL--------HREKSDSDADNCNDFFT 1002 H+ +S +FSPC +LA NN+ I + + ++++ + +L+ + + AW W+++ ++ D + +G D NIH+ + ++G + + ++ LC+ + + L+SG DG VR WD R + +E K RP+ G I+ + TD SDW+L CGG LSLW++R+ + T P C A + ++A G V L G + ++I T + L HR + + +C D FT Sbjct: 3 HMSVFSQSFSPCGRFLAAGNNYGEIGLF--------------AHEGPVFSLLSADGVLLSAGNGEVSAWSWTEL------------------------------------SKKDNSLALGGGDNNIHVLDL-EHGVFKAVLHGHTDYVHCLCMRE-REAELLSGGEDGVVRMWDSRTGRCVHCLEVHKYEVCARPQHGKWISCLTTD---SDWMLQVCGGGPALSLWHLRS-----LSPTSVFPLSGC--QRHAAFHQDTILAVGEGQFVSHCLLGGAVKAQI--PCTPQSLNTLQINTGSTEHRVLTVGGSSSCIDVFT 258
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000022073.1 (SMESG000022073.1) HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0 Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 1 Query: 52 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL Sbjct: 1 MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 339
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000022073.1 (SMESG000022073.1) HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1 Query: 64 MKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 1068 MKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL Sbjct: 1 MKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSTTASIYNIGNCGSLLVGTSDCYIYAWKWSDIEINMCSQCEELDSLFKAVLPINNEFVGCLQIISMYINEIDMIVHIGCSDGNIHLFRIIDNGSIELITTYKSNNEIVLCLTKGKGYSLISGHTDGTVRFWDGRQSKECLRIETDKSPEVRRPKLGSSINVIATDVESSDWILCGGQAQLSLWNVRAQRVGVVMKTDNKPTDDCWIPLSAILRDEVVIAGGNSDRVYLWDLSGQLNSEISLAATNHVFDVLHREKSDSDADNCNDFFTCGWGAYVELYSDIGYRKKIFSL 335 The following BLAST results are available for this feature:
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30004137 ID=SMED30004137|Name=WD_REPEATS_REGION domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1099bpback to top protein sequence of SMED30004137-orf-1 >SMED30004137-orf-1 ID=SMED30004137-orf-1|Name=SMED30004137-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=340bp MKDVMKSHLINYSMTFSPCQNYLAISNNFNSIKILNLNDGTESLIKCSSSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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