Transmembrane p24 trafficking protein 1a

Overview
NameTransmembrane p24 trafficking protein 1a
Smed IDSMED30004126
Length (bp)779
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Transmembrane p24 trafficking protein 1a (SMED30004126) t-SNE clustered cells

Violin plots show distribution of expression levels for Transmembrane p24 trafficking protein 1a (SMED30004126) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004126

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30004126SMESG000036322.1 Contig15350newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30004126SMESG000036322.1 Contig15350uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Human
Match: TMED1 (transmembrane p24 trafficking protein 1 [Source:HGNC Symbol;Acc:HGNC:17291])

HSP 1 Score: 52.373 bits (124), Expect = 1.313e-7
Identity = 47/190 (24.74%), Postives = 81/190 (42.63%), Query Frame = 3 
Query:  111 LSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVE--FQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKG-------TDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLW 632
            +  VE    G   + +GE      F  L+   +  CFY  A  + S+E  +QV+ G   DV   +E P   L+            +  ++  E   Y++CFDN  ++ + K +FF++  + +  + E++G        + L   +  + +SI  +R    R        R+ E  DR+L E NL  V  W
Sbjct:   16 MPPVEVGGAGPPPIQDGE------FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVS---ESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFW 196
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Human
Match: TMED5 (transmembrane p24 trafficking protein 5 [Source:HGNC Symbol;Acc:HGNC:24251])

HSP 1 Score: 49.6766 bits (117), Expect = 1.460e-6
Identity = 52/191 (27.23%), Postives = 89/191 (46.60%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLA--QNDFSVEFQVLRGGYHDVALFVEDP-FKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI----DGEFMYSNRELK----GTDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   +   + +CFY     +    +E+QVL G   D+   +  P  K L+ +    Q     +  + E E   Y  CFDN  ++ + K IFF++     GE      + K    GTD L   L  + +SI  I+    +        R+ E  DR++ E+N   V  W+++++++++ V+A QVY +K LF
Sbjct:   36 FTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFE----QRKSDGVHTV-ETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLF 221
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Celegans
Match: K08E4.6 (pep chromosome:WBcel235:IV:12077107:12078162:-1 gene:WBGene00010670.1 transcript:K08E4.6.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:K08E4.6)

HSP 1 Score: 45.8246 bits (107), Expect = 9.177e-6
Identity = 50/202 (24.75%), Postives = 90/202 (44.55%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYY---LAQND-FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI---DGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRK------------------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIVNN 713
            F + V   K  CF+    LA++    V++QV+ GG  ++   +     N++ Q     +   RI++ +  +   Y++CFDN  + ++ K +FF+I   D        +L         L      + +  D +HR+                  R+ E  DR +M  N   VT W+++H L+++ VA  QV+ I+ LF  N+
Sbjct:   25 FTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGGDLNINFMILHG-ANILKQDQLKVDGSHRIELNQPGD---YQVCFDNSFSYQSRKVVFFEIFLFDAHGNLDEADLSAMARTDSDLSAKMNELGVTIDEFHRRANGIKNNLNKVEYHQALLRAHEARDRAVMSANFDRVTFWSVVHTLVMVGVAGVQVFMIRSLFEENS 222
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Fly
Match: CHOp24 (gene:FBgn0029709 transcript:FBtr0343566)

HSP 1 Score: 52.7582 bits (125), Expect = 3.811e-8
Identity = 45/187 (24.06%), Postives = 83/187 (44.39%), Query Frame = 3 
Query:  180 AFIILVAPSKVDCFYYLAQND--FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKID-GEFMYSNRELKGTDSLHFT--------LYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIV 707
            AFI+ V     +CF+   +    F V F+V+ GG+ DV + +  P  +++H+     +  +      +     Y +CF+N  +S   K + F ID G+         G + +  T        L G   S++  ++  H +   + I R + E     V LW+    L+++ +   QVY++K+ F V
Sbjct:   24 AFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAPAK---GTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVR---DKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEV 204
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Fly
Match: CHOp24 (gene:FBgn0029709 transcript:FBtr0070675)

HSP 1 Score: 52.7582 bits (125), Expect = 3.811e-8
Identity = 45/187 (24.06%), Postives = 83/187 (44.39%), Query Frame = 3 
Query:  180 AFIILVAPSKVDCFYYLAQND--FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKID-GEFMYSNRELKGTDSLHFT--------LYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIV 707
            AFI+ V     +CF+   +    F V F+V+ GG+ DV + +  P  +++H+     +  +      +     Y +CF+N  +S   K + F ID G+         G + +  T        L G   S++  ++  H +   + I R + E     V LW+    L+++ +   QVY++K+ F V
Sbjct:   24 AFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAPAK---GTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVR---DKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEV 204
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Fly
Match: opm (gene:FBgn0264389 transcript:FBtr0073968)

HSP 1 Score: 52.373 bits (124), Expect = 7.106e-8
Identity = 47/199 (23.62%), Postives = 87/199 (43.72%), Query Frame = 3 
Query:  189 ILVAPSKVDCFYYLAQNDFSV--EFQVLRGGYHD--VALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI----DGEFMYSNRELKGTDSLHFTLYGVFQSIRI----------------IRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIVNN 713
            + V   K +C Y+  +   ++  E+QV+ GG+ D  ++  + DP   +I        N  R ++ KE +   YR CFDN  +  N K +FF++    +GE +  + +    D L       +  +++                 R +    RS E  DR+L E+N   V  W+++ +  +I V   QV+ ++ +F    
Sbjct:   36 VYVDAGKTECLYHSVRQGETIDFEYQVIDGGHGDLDISFTLLDPIGLVIVSDFKKPENVHRHEVAKEGD---YRFCFDNSFSMFNRKTVFFELIVEREGEELQGDTQWNEADELTGLSRDEYYDMKVQDIMDFIGRIRLQLTKARQLQDVLRSHEARDRNLAESNFQKVNHWSMVQISAMIGVGLIQVFMLRSIFATGG 231
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Fly
Match: opm (gene:FBgn0264389 transcript:FBtr0340429)

HSP 1 Score: 52.373 bits (124), Expect = 7.106e-8
Identity = 47/199 (23.62%), Postives = 87/199 (43.72%), Query Frame = 3 
Query:  189 ILVAPSKVDCFYYLAQNDFSV--EFQVLRGGYHD--VALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI----DGEFMYSNRELKGTDSLHFTLYGVFQSIRI----------------IRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIVNN 713
            + V   K +C Y+  +   ++  E+QV+ GG+ D  ++  + DP   +I        N  R ++ KE +   YR CFDN  +  N K +FF++    +GE +  + +    D L       +  +++                 R +    RS E  DR+L E+N   V  W+++ +  +I V   QV+ ++ +F    
Sbjct:   36 VYVDAGKTECLYHSVRQGETIDFEYQVIDGGHGDLDISFTLLDPIGLVIVSDFKKPENVHRHEVAKEGD---YRFCFDNSFSMFNRKTVFFELIVEREGEELQGDTQWNEADELTGLSRDEYYDMKVQDIMDFIGRIRLQLTKARQLQDVLRSHEARDRNLAESNFQKVNHWSMVQISAMIGVGLIQVFMLRSIFATGG 231
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Fly
Match: CG9308 (gene:FBgn0034681 transcript:FBtr0071749)

HSP 1 Score: 46.9802 bits (110), Expect = 3.742e-6
Identity = 25/93 (26.88%), Postives = 46/93 (49.46%), Query Frame = 3 
Query:  180 AFIILVAPSKVDCFYYLA--QNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFK 452
             FI+ +   +  CFY  A   +  +V F+V+ GG+ DV + +  P  + +H    +    F    +KE     Y++CFDN+ ++   K + F+
Sbjct:   17 GFIVTLDAHETMCFYDHANVSDKVTVSFEVMEGGFKDVGVEIAGPDDDRLHHSKQDTMGSFTFTAMKEGR---YQLCFDNKMSTMTPKILMFQ 106
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Zebrafish
Match: tmed1b (transmembrane p24 trafficking protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-1112])

HSP 1 Score: 60.8474 bits (146), Expect = 1.238e-10
Identity = 61/216 (28.24%), Postives = 106/216 (49.07%), Query Frame = 3 
Query:  138 GTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVE--FQVLRGGYHDVALFVEDPFK-NLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI----DGEFMYSNRELKGTDS----LHFTLYGVFQSIRIIRDIYHRKRSM-------ENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIVNNDK*LIY 731
            G +N F   S +   F  L+  +  +CFY  A ++ SVE  +QV+ G   DV   V  P   +LI +F  +      + +++  E   Y+ICFDN  +  + K +FF++          ++ E  G       L + L  + +S+  +     R R M       E  DR+L+E NL  V+ W+ +++L++++VA  QVY +++LF   +DK  +Y
Sbjct:   20 GAVNAF---SPADTEFTFLLPAASKECFYQSAVHNGSVEIEYQVIAGAGMDVDFSVVSPQGIHLISEFRRSDG----VHMVEPTEEGDYQICFDNTFSRFSEKMVFFEVILDHPSNDAGADDEWAGLGEPESILEYKLDDIKESMETVHRRLERSRQMQTFLRAFEARDRNLLEDNLWRVSFWSCVNLLVLLSVAFIQVYTLRRLF---DDKRRVY 225
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Zebrafish
Match: tmed5 (transmembrane p24 trafficking protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1302])

HSP 1 Score: 58.151 bits (139), Expect = 8.131e-10
Identity = 51/189 (26.98%), Postives = 88/189 (46.56%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRE-------LKGTDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   +A  + +CF+   + D S  +E+QVL G   DV   +  P  ++I       +    +    E E   Y  CFDN  ++ + K IFF++  + M  + E       ++G D L   L  +  +I  ++    +        R+ E  DR+L E+N   V LW+  +VL+++ V+  QVY ++ LF
Sbjct:   33 FTFTLAAGRRECFFQTMKKDASLEIEYQVLDGASLDVDFQLNSPSGHIIASDYRKSDGVHTV----ETEEGDYMFCFDNTFSAVSEKVIFFELILDNMGEDEESEDWKAYVQGADLLDMKLEDIMDTINNVKSRLGKSLQIQTLLRAFEARDRNLQESNYERVNLWSCTNVLVMVIVSGVQVYLLRSLF 217
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Zebrafish
Match: tmed5 (transmembrane p24 trafficking protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1302])

HSP 1 Score: 58.151 bits (139), Expect = 9.412e-10
Identity = 51/189 (26.98%), Postives = 88/189 (46.56%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRE-------LKGTDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   +A  + +CF+   + D S  +E+QVL G   DV   +  P  ++I       +    +    E E   Y  CFDN  ++ + K IFF++  + M  + E       ++G D L   L  +  +I  ++    +        R+ E  DR+L E+N   V LW+  +VL+++ V+  QVY ++ LF
Sbjct:   33 FTFTLAAGRRECFFQTMKKDASLEIEYQVLDGASLDVDFQLNSPSGHIIASDYRKSDGVHTV----ETEEGDYMFCFDNTFSAVSEKVIFFELILDNMGEDEESEDWKAYVQGADLLDMKLEDIMDTINNVKSRLGKSLQIQTLLRAFEARDRNLQESNYERVNLWSCTNVLVMVIVSGVQVYLLRSLF 217
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Zebrafish
Match: tmed1a (transmembrane p24 trafficking protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-229])

HSP 1 Score: 54.299 bits (129), Expect = 1.836e-8
Identity = 54/197 (27.41%), Postives = 89/197 (45.18%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFK-NLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNREL--------KGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENI-------DRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIVNNDK 719
            F  L+     +CF+  A  + S  VE+QV+ G   DV   +  P    L+  F  +      I  +   E   YRICFDN  +  + K ++ ++  +      E         +  DSL + L  +  S+  +     R R ++         DR+L+E NL  V+ W+   +L++I+VA  QVY +++LF   NDK
Sbjct:   32 FTFLLPAGATECFFQTATKNSSMEVEYQVIAGSGLDVGFTLISPRGYRLVSDFRKSDG----IHTVDSTEEGDYRICFDNSFSRISEKMVYVEVIMDGPEGEDEDDEDWAALAEPEDSLEYKLEDIRDSMDAVHKSLERSRQLQTTLRAFEARDRYLLEDNLWRVSFWSCASLLVMISVALTQVYTLRRLF---NDK 221
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Xenopus
Match: tmed5 (transmembrane p24 trafficking protein 5 [Source:NCBI gene;Acc:549314])

HSP 1 Score: 51.2174 bits (121), Expect = 3.623e-7
Identity = 44/186 (23.66%), Postives = 87/186 (46.77%), Query Frame = 3 
Query:  195 VAPSKVDCFYYLAQND--FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI-------DGEFMYSNRE-LKGTDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            +   + +CF+   + D    +E+QVL G   DV   +  P   L+       +    ++ +    +  Y+ CFDN  +  + K IFF++       +G  +   +  + GTD L   L  + ++I  ++    +        ++ E  DR+L E+N   VT W++ ++ +++ V+A QVY ++ LF
Sbjct:   34 LPAGQKECFFQPMKRDATLEIEYQVLDGAGLDVDFSLTSPNGELLLSEERQSDGVHSVETI----DGDYQFCFDNSFSRMSEKVIFFELILDHLNDEGNELEDWKSYITGTDLLDMKLEDILETINSVKGRLTKSAQIQTLLKAFEARDRNLQESNFERVTFWSVFNLTVMVVVSALQVYMLRSLF 215
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Xenopus
Match: tmed1 (transmembrane p24 trafficking protein 1 [Source:NCBI gene;Acc:734138])

HSP 1 Score: 49.2914 bits (116), Expect = 1.255e-6
Identity = 49/190 (25.79%), Postives = 86/190 (45.26%), Query Frame = 3 
Query:  192 LVAPSKVDCFYY--LAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRE-----------LKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENI-------DRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            L+   + +CFY   L      +E+QV+ G   DV   V  P   L+      +     +  ++  E   Y ICFDN  ++ + K +FF    E ++ N++           ++  + L   L  + +SI  ++    R   M+ +       DR+L ++NL  V  W+ I+V +++ VA  QVY +K LF
Sbjct:   30 LLPAGRQECFYQTTLYNGSMEIEYQVIGGAGLDVDFSVTTPSGILLIM---ERRRSDGVHTVEPTEAGDYMICFDNSFSTISEKLVFF----ELIFDNQQGDEEPDSWADVVEPDELLDIKLEDIKESIESVKSRLERSIQMQTVLRAFEARDRNLQDSNLERVNFWSAINVGVLVTVAFLQVYMLKSLF 212
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Mouse
Match: Tmed1 (transmembrane p24 trafficking protein 1 [Source:MGI Symbol;Acc:MGI:106201])

HSP 1 Score: 51.9878 bits (123), Expect = 1.382e-7
Identity = 50/189 (26.46%), Postives = 85/189 (44.97%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFSVE--FQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKG-------TDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F  L+   +  CFY  A  + S+E  +QV+ G   DV   +E P   L+            +  ++  E   YR+CFDN  ++ + K +FF++  +      E++G        + L   +  + +SI  +R    R        R+ E  DR+L E NL  V  W+  +V +++ VA  QV  +K+ F
Sbjct:   34 FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVS---ESRKADGVHTVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFF 219
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Mouse
Match: Tmed5 (transmembrane p24 trafficking protein 5 [Source:MGI Symbol;Acc:MGI:1921586])

HSP 1 Score: 51.2174 bits (121), Expect = 2.753e-7
Identity = 51/191 (26.70%), Postives = 91/191 (47.64%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLA--QNDFSVEFQVLRGGYHDVALFVEDP-FKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI----DGEFMYSNRELK----GTDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   +   + +CFY     +    +E+QVL GG  D+   +  P  + L+ +    Q     +  + E E+  Y  CFDN  ++ + K IFF++     GE +    + K     TD L   L  + +SI  I+    +        R+ E  DR++ E+N   V  W+++++++++ V+A QVY +K LF
Sbjct:   36 FTFTLPAGRKECFYQPMPLKASLEIEYQVLDGGELDIDFHLTSPEGRTLVFE----QRKSDGVHTI-ETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVQGQEDWKKYITNTDVLEMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVVVSAIQVYTLKSLF 221
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BLAST of Transmembrane p24 trafficking protein 1a vs. UniProt/SwissProt
Match: sp|Q9P7I9|EMP24_SCHPO (Endosomal protein P24B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=emp24 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 7.721e-8
Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = 3 
Query:  189 ILVAPSKVDCFYY-LAQND-FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKR---SMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLFIV 707
            I + P + +CFY  L  ND  SV +Q   GG   V++ + +P   ++HQ  PN    +   +    +   Y  CF N       K++ F + G    S+ +L   + L   L  V Q    I  + H +    + E I R+  E+    V  W+++  +I+++V  FQ++++K+LF V
Sbjct:   24 ITLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGK---YMYCFYNDALDGESKEVLFNVHGVIYISDEDLDANNPL---LGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEV 195
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. UniProt/SwissProt
Match: sp|Q13445|TMED1_HUMAN (Transmembrane emp24 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TMED1 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 6.305e-7
Identity = 47/190 (24.74%), Postives = 81/190 (42.63%), Query Frame = 3 
Query:  111 LSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVE--FQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKG-------TDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLW 632
            +  VE    G   + +GE      F  L+   +  CFY  A  + S+E  +QV+ G   DV   +E P   L+            +  ++  E   Y++CFDN  ++ + K +FF++  + +  + E++G        + L   +  + +SI  +R    R        R+ E  DR+L E NL  V  W
Sbjct:   16 MPPVEVGGAGPPPIQDGE------FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVS---ESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFW 196
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. UniProt/SwissProt
Match: sp|Q54BN0|TMEDB_DICDI (Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum OX=44689 GN=empB PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.197e-7
Identity = 42/183 (22.95%), Postives = 82/183 (44.81%), Query Frame = 3 
Query:  168 SSYVAFIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSM---ENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
             S  A  + V P   +CFY   ++  +  + +QV+RGG  D+ + + DP  N I +           Q     E+  Y++CF+N  +    K + F    E        KG DS+      V +  R+++ + H ++ +   E  +R   E+    V  W +  V++++ +   Q+++++K F
Sbjct:   20 GSSSALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDPKGNTIFERLHFDTQMKGKQSFTAGESGAYKVCFNNEMSRFTAKVVTFTWASEEEGVKEVAKG-DSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWF 201
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. UniProt/SwissProt
Match: sp|Q5BK85|TMED1_RAT (Transmembrane emp24 domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Tmed1 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.045e-7
Identity = 50/189 (26.46%), Postives = 85/189 (44.97%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFSVE--FQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKG-------TDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F  L+   +  CFY  A  + S+E  +QV+ G   DV   +E P   L+            +  ++  E   YR+CFDN  ++ + K +FF++  +      E++G        + L   +  + +SI  +R    R        R+ E  DR+L E NL  V  W+  +V +++ VA  QV  +K+ F
Sbjct:   34 FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVS---ESRKADGVHTVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFF 219
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. UniProt/SwissProt
Match: sp|Q3V009|TMED1_MOUSE (Transmembrane emp24 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tmed1 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.666e-7
Identity = 50/189 (26.46%), Postives = 85/189 (44.97%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFSVE--FQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKG-------TDSLHFTLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F  L+   +  CFY  A  + S+E  +QV+ G   DV   +E P   L+            +  ++  E   YR+CFDN  ++ + K +FF++  +      E++G        + L   +  + +SI  +R    R        R+ E  DR+L E NL  V  W+  +V +++ VA  QV  +K+ F
Sbjct:   34 FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVS---ESRKADGVHTVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFF 219
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. TrEMBL
Match: G4VIC4 (GOLD domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_137070.1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.196e-14
Identity = 60/205 (29.27%), Postives = 96/205 (46.83%), Query Frame = 3 
Query:  168 SSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSN---------------------------RELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            + +V+ +++V P    C++Y    +F VE+QVL+GG+ D+ +F+ DP    I   PP  ++   I + K F    Y IC DNR AS   K ++F +D    + N                              +  D L   L  +F  +R I  +  R  + ++ D+ LME NL  +T  +L  V+++IAVA  QV  I+ LF
Sbjct:  324 ADFVSLVVIVPPGVKHCYFYKPITNFDVEYQVLKGGHLDIGIFIRDPEGEPITIRPPLSDSQVSISVPKYFRLMPYAICLDNRKASYAYKNVYFSVDANLNWDNPSELERQAIETLRNNPLVNSQAQAASAEHAENIDKLMAQLDILFGRLRRIEHMQQRSSNFDSADKSLMEENLERITTGSLFQVVLMIAVATVQVGLIRSLF 528
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. TrEMBL
Match: A0A5K4F576 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.475e-14
Identity = 60/205 (29.27%), Postives = 96/205 (46.83%), Query Frame = 3 
Query:  168 SSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSN---------------------------RELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            + +V+ +++V P    C++Y    +F VE+QVL+GG+ D+ +F+ DP    I   PP  ++   I + K F    Y IC DNR AS   K ++F +D    + N                              +  D L   L  +F  +R I  +  R  + ++ D+ LME NL  +T  +L  V+++IAVA  QV  I+ LF
Sbjct:  321 ADFVSLVVIVPPGVKHCYFYKPITNFDVEYQVLKGGHLDIGIFIRDPEGEPITIRPPLSDSQVSISVPKYFRLMPYAICLDNRKASYAYKNVYFSVDANLNWDNPSELERQAIETLRNNPLVNSQAQAASAEHAENIDKLMAQLDILFGRLRRIEHMQQRSSNFDSADKSLMEENLERITTGSLFQVVLMIAVATVQVGLIRSLF 525
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. TrEMBL
Match: A0A5K4F6B7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.595e-14
Identity = 60/205 (29.27%), Postives = 96/205 (46.83%), Query Frame = 3 
Query:  168 SSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSN---------------------------RELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            + +V+ +++V P    C++Y    +F VE+QVL+GG+ D+ +F+ DP    I   PP  ++   I + K F    Y IC DNR AS   K ++F +D    + N                              +  D L   L  +F  +R I  +  R  + ++ D+ LME NL  +T  +L  V+++IAVA  QV  I+ LF
Sbjct:  321 ADFVSLVVIVPPGVKHCYFYKPITNFDVEYQVLKGGHLDIGIFIRDPEGEPITIRPPLSDSQVSISVPKYFRLMPYAICLDNRKASYAYKNVYFSVDANLNWDNPSELERQAIETLRNNPLVNSQAQAASAEHAENIDKLMAQLDILFGRLRRIEHMQQRSSNFDSADKSLMEENLERITTGSLFQVVLMIAVATVQVGLIRSLF 525
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. TrEMBL
Match: A0A4Z2DV04 (Transmembrane emp24 domain-containing protein isoform 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_004547 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.853e-14
Identity = 58/203 (28.57%), Postives = 98/203 (48.28%), Query Frame = 3 
Query:  174 YVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMY-------------------SNRELKGTDSLHF--------TLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            +V+ +++V P    C++Y    DF VE+QV++GG+ DV +F+ DP    +   PP  ++   + + K F    Y IC DNR AS   K ++F +D    +                   +N + +  ++ H          L  +F  +R I  +  R  + ++ D+ LME NL  +T  +L  V+++IAVA  QV  I+ LF
Sbjct:  270 FVSLVVIVPPGVKHCYFYKPIADFEVEYQVVKGGHLDVGIFIRDPEGEPVAIRPPLSDSQVSVSVPKHFRLMPYAICLDNRKASYAYKNVYFSVDVNLNWDNPNELERQAIETLRNNALANSQAQEANAAHVENIEKLMAQLDMIFGRLRRIEHMQQRSSNFDSADKSLMEENLERITTGSLFQVILMIAVATVQVGLIRSLF 472
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. TrEMBL
Match: A0A0V0J4W8 (GOLD domain-containing protein (Fragment) OS=Schistocephalus solidus OX=70667 GN=TR157388 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.349e-14
Identity = 66/212 (31.13%), Postives = 101/212 (47.64%), Query Frame = 3 
Query:  156 EGES----SSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSN---RELKGTDSLHF------TLYGVFQSI---------------RIIRDIYHRKRSMEN--IDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            EGE+     ++V+ +++V PS  DC++Y  +  F VEFQVL+G   D+ L V DP    I    P       IQ+L EF+ R + +C DNR AS   K ++  ID    + N    +++  +S++F      T   V Q I               R+ R    ++RS  N  +DR LMETN   V  W+   + +++ V   Q   I+ LF
Sbjct:  151 EGETFFSTENFVSMVVVVRPSSKDCYFYEPETHFDVEFQVLKGDKLDIGLIVIDPNGVPIVFRDPVAEASTPIQVLDEFKRRPFAVCLDNRKASYGEKVVYLAIDLRLNWRNPTPEDMQLMNSINFRIGQDKTKEQVRQHIENLERMSMIVDTIATRLHRAQRLQQRSRNNAAVDRVLMETNQQRVMAWSTFQIFVMVFVGIVQTLLIRSLF 362
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Cavefish
Match: tmed5 (transmembrane emp24 domain-containing protein 5 [Source:NCBI gene;Acc:103032944])

HSP 1 Score: 57.3806 bits (137), Expect = 1.439e-9
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFKN-LIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI------DGEFMYSNRE-LKGTDSLHFTLYGVFQSIRIIR-------DIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   + P   +CF+   + D S  +E+QVL G   DV  ++  P  + L+  F  +   +       E E   Y  CFDN  ++ + K IFF++      DG+     +E ++G D L   L  +  +I  ++        I    R+ E  DR+L E+N   V +W+  +V++++ V+  QVY ++ LF
Sbjct:   35 FTFTLPPGHKECFFQTMRKDASLEIEYQVLDGAGLDVDFYLSSPSGHVLVSDFRKSDGVH-----TVETEEGDYMFCFDNTFSTVSEKIIFFELILDNMDDGQDPEDWKEFVQGADLLDMKLEDIMDTINSVKARLGKSLQIQTVLRAFEARDRNLQESNYERVNVWSCTNVVLMVVVSCIQVYLLRSLF 219
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Cavefish
Match: tmed5 (transmembrane emp24 domain-containing protein 5 [Source:NCBI gene;Acc:103032944])

HSP 1 Score: 57.3806 bits (137), Expect = 1.539e-9
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFKN-LIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI------DGEFMYSNRE-LKGTDSLHFTLYGVFQSIRIIR-------DIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   + P   +CF+   + D S  +E+QVL G   DV  ++  P  + L+  F  +   +       E E   Y  CFDN  ++ + K IFF++      DG+     +E ++G D L   L  +  +I  ++        I    R+ E  DR+L E+N   V +W+  +V++++ V+  QVY ++ LF
Sbjct:   35 FTFTLPPGHKECFFQTMRKDASLEIEYQVLDGAGLDVDFYLSSPSGHVLVSDFRKSDGVH-----TVETEEGDYMFCFDNTFSTVSEKIIFFELILDNMDDGQDPEDWKEFVQGADLLDMKLEDIMDTINSVKARLGKSLQIQTVLRAFEARDRNLQESNYERVNVWSCTNVVLMVVVSCIQVYLLRSLF 219
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Cavefish
Match: tmed5 (transmembrane emp24 domain-containing protein 5 [Source:NCBI gene;Acc:103032944])

HSP 1 Score: 56.9954 bits (136), Expect = 1.975e-9
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 3 
Query:  183 FIILVAPSKVDCFYYLAQNDFS--VEFQVLRGGYHDVALFVEDPFKN-LIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI------DGEFMYSNRE-LKGTDSLHFTLYGVFQSIRIIR-------DIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   + P   +CF+   + D S  +E+QVL G   DV  ++  P  + L+  F  +   +       E E   Y  CFDN  ++ + K IFF++      DG+     +E ++G D L   L  +  +I  ++        I    R+ E  DR+L E+N   V +W+  +V++++ V+  QVY ++ LF
Sbjct:   33 FTFTLPPGHKECFFQTMRKDASLEIEYQVLDGAGLDVDFYLSSPSGHVLVSDFRKSDGVH-----TVETEEGDYMFCFDNTFSTVSEKIIFFELILDNMDDGQDPEDWKEFVQGADLLDMKLEDIMDTINSVKARLGKSLQIQTVLRAFEARDRNLQESNYERVNVWSCTNVVLMVVVSCIQVYLLRSLF 217
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Cavefish
Match: tmed1b (transmembrane emp24 domain-containing protein 1-like [Source:NCBI gene;Acc:103026656])

HSP 1 Score: 53.9138 bits (128), Expect = 2.833e-8
Identity = 50/204 (24.51%), Postives = 93/204 (45.59%), Query Frame = 3 
Query:  153 FEGESSSYVAFIILVAPSKVDCFYYLAQND--FSVEFQVLRGGYHDVALFVEDPFK-NLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDS-----------LHFTLYGVFQSIRIIRDIYHRKRSMENI-------DRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            F   + S + F++       +CFY  A  +    VE+QV+ G   DV   +  P    L+ +F  +      + +++  E   Y+ CFDN  +  + K +FF++    + S+    G D            L + L  + +S+  +     R R M+ +       DR+L+E NL  V+ W+   +++++ VA  QVY +++LF
Sbjct:   29 FSPGADSELTFVLPAG--HTECFYQSAARNGTMEVEYQVIAGAGMDVDFSIISPHGVQLVSEFRRSDG----VHMVEPTEEGDYQFCFDNSFSRFSEKMVFFEV---ILESSANDAGADDEWAGLGEPENLLEYKLEDIRESMDSVHRHLERSRQMQTVLRAFEARDRNLLEDNLWRVSFWSCTSLMVMLVVAFTQVYTVRRLF 223
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Sea Lamprey
Match: tmed5 (transmembrane p24 trafficking protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1302])

HSP 1 Score: 57.3806 bits (137), Expect = 3.255e-10
Identity = 52/185 (28.11%), Postives = 85/185 (45.95%), Query Frame = 3 
Query:  195 VAPSKVDCFYYLAQND--FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRE----LKGTDSLHF---TLYGVFQSIRIIRDIYHRK-------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            +AP   +CFY   +      +E+QV+ GG  DV   V  P   ++       +    + + +E +   Y ICFDN  +  + K IFF+I  + M    E    +    + H     L  + +S+  ++    R        R+ E  DR+L E+NL  V LW+   VL ++ V+A QVY ++ LF
Sbjct:   43 LAPGHRECFYQPVKPGTVVEIEYQVIDGGELDVDFTVTAPSGTVLLAEHRQGDGVHSVDVKEEGD---YEICFDNSFSHISEKLIFFEILLDHMQPEEERPEWMDAISADHLIGMKLEDLQESLNSVKARLSRSHQIQTVLRAFEARDRNLQESNLARVNLWSAASVLALMGVSALQVYLVRSLF 224
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Sea Lamprey
Match: tmed5 (transmembrane p24 trafficking protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1302])

HSP 1 Score: 46.2098 bits (108), Expect = 1.972e-6
Identity = 50/212 (23.58%), Postives = 93/212 (43.87%), Query Frame = 3 
Query:  132 ANGTINLFEGESSSYVAFIILVAPSKVDCFYY--LAQNDFSVEFQVLRGGYHDVALFVEDPFKNLI-HQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDS------------LHFTLYGVFQSIRIIRDIYHRKRSMENI-------DRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            ANG     +G+      F   +   + +CFY    A     VE+QV+ G   DV   +  P   ++  ++  ++     +Q ++  ++  Y  CFDN  +  + K +FF    E +  N E++  D             +   L  + +++  I+    +   M+++       DR L ETN   V LW+ I +++++ VA  QVY ++ LF
Sbjct:   19 ANGFAQSLDGD------FTFSLPAGRTECFYQALTAGASMEVEYQVIDGAGMDVDFSISSPTGQVLFAEYRKSEG----LQSVEAKQDGDYMFCFDNSFSHVSEKVVFF----EVILDNMEVEKDDKPAWKDFVEVDEIIDMKLEDLQETMDNIKTRLGKSIQMQSVLRVYEARDRKLQETNFEMVNLWSGISMVVLVMVAGLQVYTLRSLF 216
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Medaka
Match: tmed1a (transmembrane emp24 domain-containing protein 1 [Source:NCBI gene;Acc:101161889])

HSP 1 Score: 53.9138 bits (128), Expect = 2.590e-8
Identity = 56/208 (26.92%), Postives = 98/208 (47.12%), Query Frame = 3 
Query:  141 TINLFEG-ESSSYVAFIILVAPSKVDCFYY-LAQND-FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKG--TDSLHFTLYGV-----FQSIRIIRDIYHRK-----------RSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            T+ L  G E+  ++ F  ++     +CF+    +ND   VE+QV+ G   DV   +  P     H+   +  N   I ++    +  YR+CFDN  +  + K +FF++    + S     G   D   FT+         + IR   +  HR            R+ E+ DR+L+E NL  V+ W+ I++L+++ VA  Q+Y +++LF
Sbjct:   17 TVGLILGSEAKQHMEFTFILPAGSTECFFQSTTRNDSMEVEYQVIAGSGLDVGFALISPNG---HRLISDFRNSHGIHMVDPAVDGDYRLCFDNSFSKLSEKMVFFEV---VVNSQNNAAGGREDWEDFTVTESTVDYRLEDIRSSMESVHRHLEKSRQVQAVLRAFESRDRYLLEDNLWRVSFWSCINLLVLLTVAVVQIYTLQRLF 218
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Medaka
Match: tmed1b (transmembrane emp24 domain-containing protein 1 [Source:NCBI gene;Acc:101156470])

HSP 1 Score: 53.5286 bits (127), Expect = 3.596e-8
Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 3 
Query:  192 LVAPSKVDCFYYLA-QND-FSVEFQVLRGGYHDVALFVEDPFK-NLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKI----DGEFMYSNRELKGTDS-----LHFTLYGVFQSIRIIRDIYHRKRSMENI-------DRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            L+     +CFY  A QN    VE+QV+ G   DV   +  P    LI +   +      + +++  E   Y+ICFDN  +  + K +FF+I     G     + E    D      L + L  +  S+  +     R R M+ +       DR+L+E NL  V+ W+   VL+++ VA  QVY ++KLF
Sbjct:   42 LLPAGSSECFYQSAVQNGTMEVEYQVIAGAGMDVDFTIVSPEGVRLIVESRRSDG----VHVVEPTEGGDYQICFDNSFSRFSEKMVFFEILTEAPGGDAGGDEEWPMLDEPDGSLLEYKLEDIRDSMDAVYRRLDRSRQMQTVLRAFEARDRNLLEDNLWRVSFWSCASVLVMLCVALTQVYTVRKLF 226
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Medaka
Match: tmed3 (transmembrane emp24 domain-containing protein 3 [Source:NCBI gene;Acc:101155019])

HSP 1 Score: 50.447 bits (119), Expect = 3.388e-7
Identity = 39/149 (26.17%), Postives = 67/149 (44.97%), Query Frame = 3 
Query:  216 CFYYLAQND--FSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRE-----LKGTDS---LHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLW 632
            CFY   + D  F ++FQV+ GG +DV  FV DP  N+++     Q + F      +     Y++CF N  ++   K ++     +F Y + E     + G+ +   L  +   + + ++++ D     R  E  DR   E  L  VT W
Sbjct:   32 CFYEELEKDVKFDIDFQVISGGNYDVDSFVTDPQNNVLYNERKKQYDSFSHTTTMK---GVYKVCFSNEFSTFTHKTVYL----DFRYGDEEPLLQSMTGSTALTQLESSCVAIHEILKVVADSQTWYRLREAQDRTKAEHLLQRVTYW 173
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Planmine SMEST
Match: SMESG000036322.1 (SMESG000036322.1)

HSP 1 Score: 431.024 bits (1107), Expect = 1.890e-152
Identity = 221/223 (99.10%), Postives = 223/223 (100.00%), Query Frame = 3 
Query:   15 MLLTDYLYFVSIMSTFRVLILLIAFFCDNFGYLSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVY 683
            MLLTDYLYFVSIMSTFRVLILLIAFFCDNFGYLSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWALIHVLIIIAVAAFQ++
Sbjct:    1 MLLTDYLYFVSIMSTFRVLILLIAFFCDNFGYLSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWALIHVLIIIAVAAFQIH 223
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Planmine SMEST
Match: SMESG000036322.1 (SMESG000036322.1)

HSP 1 Score: 408.683 bits (1049), Expect = 7.328e-144
Identity = 209/211 (99.05%), Postives = 211/211 (100.00%), Query Frame = 3 
Query:   51 MSTFRVLILLIAFFCDNFGYLSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVY 683
            MSTFRVLILLIAFFCDNFGYLSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWALIHVLIIIAVAAFQ++
Sbjct:    1 MSTFRVLILLIAFFCDNFGYLSSVEGKANGTINLFEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVEDPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWALIHVLIIIAVAAFQIH 211
[Close]
BLAST of Transmembrane p24 trafficking protein 1a vs. Planmine SMEST
Match: SMESG000078204.1 (SMESG000078204.1)

HSP 1 Score: 111.309 bits (277), Expect = 5.852e-29
Identity = 70/208 (33.65%), Postives = 119/208 (57.21%), Query Frame = 3 
Query:  108 YLSSVEGKANGTINLFEG----ESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVED-PFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFKIDGEFMYSNR-----ELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLMETNLMSVTLWXXXXXXXXXXXXXFQVYFIKKLF 701
            ++ SV+GK N T  +  G     + SYV F ++V    V+C+YY A + F +++QVL+GG +D+AL V D   K +  Q   N  N  ++ + K+  N+ Y ICFDN  +S++ KK++  ID   + +       +L   D +H +L  ++ S+  +  +  ++RS+E IDR +ME N   VT+W +I + ++I V+A Q+  I+ LF
Sbjct:   64 FIPSVDGKMNPTDTISGGAYYIHNPSYVTFTLIVPSQSVECYYYTAADSFEIDYQVLKGGDYDIALGVYDYNNKKVAFQKSSNDGN-IKVIVPKDMLNKDYSICFDNYQSSRDTKKVYMMIDVANVNAINTPEYAQLNKLDLMHTSLTSIYTSLNQMEHLQEKQRSIEAIDRSIMERNYEYVTMWCIIQITVMIVVSAIQLILIRSLF 270
The following BLAST results are available for this feature:
BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
TMED11.313e-724.74transmembrane p24 trafficking protein 1 [Source:HG... [more]
TMED51.460e-627.23transmembrane p24 trafficking protein 5 [Source:HG... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
K08E4.69.177e-624.75pep chromosome:WBcel235:IV:12077107:12078162:-1 ge... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CHOp243.811e-824.06gene:FBgn0029709 transcript:FBtr0343566[more]
CHOp243.811e-824.06gene:FBgn0029709 transcript:FBtr0070675[more]
opm7.106e-823.62gene:FBgn0264389 transcript:FBtr0073968[more]
opm7.106e-823.62gene:FBgn0264389 transcript:FBtr0340429[more]
CG93083.742e-626.88gene:FBgn0034681 transcript:FBtr0071749[more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
tmed1b1.238e-1028.24transmembrane p24 trafficking protein 1b [Source:Z... [more]
tmed58.131e-1026.98transmembrane p24 trafficking protein 5 [Source:ZF... [more]
tmed59.412e-1026.98transmembrane p24 trafficking protein 5 [Source:ZF... [more]
tmed1a1.836e-827.41transmembrane p24 trafficking protein 1a [Source:Z... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
tmed53.623e-723.66transmembrane p24 trafficking protein 5 [Source:NC... [more]
tmed11.255e-625.79transmembrane p24 trafficking protein 1 [Source:NC... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Tmed11.382e-726.46transmembrane p24 trafficking protein 1 [Source:MG... [more]
Tmed52.753e-726.70transmembrane p24 trafficking protein 5 [Source:MG... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9P7I9|EMP24_SCHPO7.721e-826.97Endosomal protein P24B OS=Schizosaccharomyces pomb... [more]
sp|Q13445|TMED1_HUMAN6.305e-724.74Transmembrane emp24 domain-containing protein 1 OS... [more]
sp|Q54BN0|TMEDB_DICDI7.197e-722.95Transmembrane emp24 domain-containing protein B OS... [more]
sp|Q5BK85|TMED1_RAT9.045e-726.46Transmembrane emp24 domain-containing protein 1 OS... [more]
sp|Q3V009|TMED1_MOUSE9.666e-726.46Transmembrane emp24 domain-containing protein 1 OS... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G4VIC42.196e-1429.27GOLD domain-containing protein OS=Schistosoma mans... [more]
A0A5K4F5762.475e-1429.27Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A5K4F6B72.595e-1429.27Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A4Z2DV042.853e-1428.57Transmembrane emp24 domain-containing protein isof... [more]
A0A0V0J4W83.349e-1431.13GOLD domain-containing protein (Fragment) OS=Schis... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
tmed51.439e-927.37transmembrane emp24 domain-containing protein 5 [S... [more]
tmed51.539e-927.37transmembrane emp24 domain-containing protein 5 [S... [more]
tmed51.975e-927.37transmembrane emp24 domain-containing protein 5 [S... [more]
tmed1b2.833e-824.51transmembrane emp24 domain-containing protein 1-li... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
tmed53.255e-1028.11transmembrane p24 trafficking protein 5 [Source:ZF... [more]
tmed51.972e-623.58transmembrane p24 trafficking protein 5 [Source:ZF... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transmembrane p24 trafficking protein 1a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
tmed1a2.590e-826.92transmembrane emp24 domain-containing protein 1 [S... [more]
tmed1b3.596e-829.10transmembrane emp24 domain-containing protein 1 [S... [more]
tmed33.388e-726.17transmembrane emp24 domain-containing protein 3 [S... [more]
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BLAST of Transmembrane p24 trafficking protein 1a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000036322.11.890e-15299.10SMESG000036322.1[more]
SMESG000036322.17.328e-14499.05SMESG000036322.1[more]
SMESG000078204.15.852e-2933.65SMESG000078204.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004126 ID=SMED30004126|Name=Transmembrane p24 trafficking protein 1a|organism=Schmidtea mediterranea sexual|type=transcript|length=779bp
TATACTGTGTCTTAATGCTGTTAACAGATTATTTGTATTTTGTTTCAATC
ATGTCCACGTTTCGTGTTCTCATTTTGCTCATTGCGTTTTTTTGTGACAA
TTTTGGGTATTTGTCGAGTGTTGAAGGAAAGGCTAATGGTACAATTAATT
TGTTTGAAGGTGAAAGTTCATCATATGTTGCTTTTATCATTCTGGTGGCT
CCTTCAAAAGTCGATTGTTTTTATTATTTAGCGCAAAATGATTTTAGTGT
AGAATTCCAGGTATTGCGAGGTGGGTATCATGATGTCGCTTTATTTGTAG
AGGACCCATTCAAGAATCTAATTCATCAATTTCCTCCTAATCAAAATAAT
TATTTCAGGATTCAAATATTGAAAGAATTTGAGAATCGTTTTTACCGTAT
TTGTTTTGATAATCGCCCAGCTTCTAAAAATTTAAAAAAGATTTTTTTCA
AAATAGATGGAGAATTTATGTACAGCAATCGAGAACTGAAGGGAACGGAT
TCACTTCATTTTACATTGTATGGTGTATTCCAATCAATTCGAATCATAAG
AGACATTTATCATCGAAAAAGGTCAATGGAAAATATTGATAGGCACTTAA
TGGAAACAAATCTGATGTCTGTCACACTGTGGGCCCTCATTCATGTACTG
ATTATCATTGCTGTGGCCGCATTTCAAGTATATTTTATCAAAAAACTTTT
TATTGTGAATAATGATAAATAGTTAATTTATTATTACAAAAATAAAGCTT
TCTCTTTTGAAAAATTGGTTTTGATTATG
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protein sequence of SMED30004126-orf-1

>SMED30004126-orf-1 ID=SMED30004126-orf-1|Name=SMED30004126-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=240bp
YCVLMLLTDYLYFVSIMSTFRVLILLIAFFCDNFGYLSSVEGKANGTINL
FEGESSSYVAFIILVAPSKVDCFYYLAQNDFSVEFQVLRGGYHDVALFVE
DPFKNLIHQFPPNQNNYFRIQILKEFENRFYRICFDNRPASKNLKKIFFK
IDGEFMYSNRELKGTDSLHFTLYGVFQSIRIIRDIYHRKRSMENIDRHLM
ETNLMSVTLWALIHVLIIIAVAAFQVYFIKKLFIVNNDK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD_dom
Vocabulary: biological process
TermDefinition
GO:0006810transport
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO:0016020membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 60..234
e-value: 4.6E-22
score: 89.3
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 63..233
e-value: 7.3E-20
score: 71.7
NoneNo IPR availablePANTHERPTHR22811:SF45TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 6coord: 53..235
NoneNo IPR availableTMHMMTMhelixcoord: 10..29
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
IPR015720TMP21-relatedPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 53..235