SMED30004081

Overview
NameSMED30004081
Smed IDSMED30004081
Length (bp)1858
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30004081 (SMED30004081) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30004081 (SMED30004081) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004081 (SMED30004081) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004081 (SMED30004081) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30004081

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gamma neoblastSMED30004081SMESG000040291.1 SMED30004081smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pigment cellSMED30004081SMESG000040291.1 SmedASXL_018890SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
gutSMED30004081SMESG000040291.1 dd_Smed_v4_1144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004081SMESG000040291.1 dd_Smed_v4_1144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30004081SMESG000040291.1 dd_Smed_v4_1144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004081SMESG000040292.1 SMESG000040291.1 Contig37370uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30004081SMESG000040292.1 SMESG000040291.1 Contig37370newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
tail regionSMED30004081SMESG000040291.1 dd_Smed_v6_1144_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
gamma neoblastSMED30004081SMESG000040291.1 dd_Smed_v6_1144_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30004081SMESG000040291.1 dd_Smed_v6_1144_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30004081SMESG000040291.1 dd_Smed_v4_1144_0_1dd_Smed_v4PMID:30962434
Cote et al., 2019		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30004081 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000663:17981..20057 -9079
Homology
[Close]
BLAST of SMED30004081 vs. Ensembl Mouse
Match: Tnxb (tenascin XB [Source:MGI Symbol;Acc:MGI:1932137])

HSP 1 Score: 53.1434 bits (126), Expect = 1.386e-6
Identity = 107/490 (21.84%), Postives = 159/490 (32.45%), Query Frame = 2 
Query:  437 GICEADDQCFSGVCLNMGSFKF--CSKETKIQNKVAERGRCREDSNCFSGFCNPVRS--NSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGIT------RHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCI----------KDEQCFSNFCVKDRLGKYK------FC--------AKVSRNPKLVGGGGQCLHDK-MCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYC------HKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAXXXXXXXXXXXXXP--CVRDWQCFSRYCY----FNGK---LKYCAKDGQRFG---------EVGISGP----------CRRNKDCSSSRCV 1699
            G C+   +C  GVC+    F    CS+ +  +N   +RGRC E+  C    C+P  S  +  ++ C +             C    +C +G CV   G +      R+C +         Q G C+ D +C   VC        C+  +      G GGRC+            E C +  C +D  G+ +       C          V   P      G C   + +C+ G      + + C +D            CR    C  G+CV         C             G CR    C S  C         D  T+ C  D + RG+    G C     C   F  ++ G++ C              G C  H  C +G CV       CA      +      P  C    QC +  C     ++G+   ++ C +D  + G           G +G           CRR   C   RCV
Sbjct:  207 GDCQGRGRCVKGVCVCRAGFSGPDCSQRSCPRN-CNQRGRC-EEGRC---VCDPGYSGEDCGVRSCPR------------GCSQRGRCENGLCVCNPGYSGEDCGVRNCPRG------CSQRGRCE-DGRC---VCDPGYSGEDCSMRTCPWD-CGDGGRCVDGRCVCWPGYSGEDCSTRTCPRDCRGRGRCEDGECICDAGYSGDDCGVRSCPGDCNQRGHCEDGRCVCWPGYTGADCSTRACPRD------------CRGRGRCEDGVCVCHAGYSGEDC-------GVRSCPGDCRGRGNCESGRCVCWPGYTGRDCGTRACPGDCRGRGRCV-DGRC----VCNPGFTGEDCGSRRC-------------PGDCRGHGHCENGVCV-------CAVGYSGDDCSTRSCPSDCRGRGQCLNGLCECDEGYSGEDCGIRRCPRDCSQHGVCQDGLCMCHAGYAGEDCSIRTCPADCRRRGRCEDGRCV 624
[Close]
BLAST of SMED30004081 vs. Ensembl Mouse
Match: Tnxb (tenascin XB [Source:MGI Symbol;Acc:MGI:1932137])

HSP 1 Score: 51.9878 bits (123), Expect = 2.683e-6
Identity = 107/490 (21.84%), Postives = 159/490 (32.45%), Query Frame = 2 
Query:  437 GICEADDQCFSGVCLNMGSFKF--CSKETKIQNKVAERGRCREDSNCFSGFCNPVRS--NSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGIT------RHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCI----------KDEQCFSNFCVKDRLGKYK------FC--------AKVSRNPKLVGGGGQCLHDK-MCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYC------HKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAXXXXXXXXXXXXXP--CVRDWQCFSRYCY----FNGK---LKYCAKDGQRFG---------EVGISGP----------CRRNKDCSSSRCV 1699
            G C+   +C  GVC+    F    CS+ +  +N   +RGRC E+  C    C+P  S  +  ++ C +             C    +C +G CV   G +      R+C +         Q G C+ D +C   VC        C+  +      G GGRC+            E C +  C +D  G+ +       C          V   P      G C   + +C+ G      + + C +D            CR    C  G+CV         C             G CR    C S  C         D  T+ C  D + RG+    G C     C   F  ++ G++ C              G C  H  C +G CV       CA      +      P  C    QC +  C     ++G+   ++ C +D  + G           G +G           CRR   C   RCV
Sbjct:  207 GDCQGRGRCVKGVCVCRAGFSGPDCSQRSCPRN-CNQRGRC-EEGRC---VCDPGYSGEDCGVRSCPR------------GCSQRGRCENGLCVCNPGYSGEDCGVRNCPRG------CSQRGRCE-DGRC---VCDPGYSGEDCSMRTCPWD-CGDGGRCVDGRCVCWPGYSGEDCSTRTCPRDCRGRGRCEDGECICDAGYSGDDCGVRSCPGDCNQRGHCEDGRCVCWPGYTGADCSTRACPRD------------CRGRGRCEDGVCVCHAGYSGEDC-------GVRSCPGDCRGRGNCESGRCVCWPGYTGRDCGTRACPGDCRGRGRCV-DGRC----VCNPGFTGEDCGSRRC-------------PGDCRGHGHCENGVCV-------CAVGYSGDDCSTRSCPSDCRGRGQCLNGLCECDEGYSGEDCGIRRCPRDCSQHGVCQDGLCMCHAGYAGEDCSIRTCPADCRRRGRCEDGRCV 624
[Close]
BLAST of SMED30004081 vs. Ensembl Mouse
Match: Tnxb (tenascin XB [Source:MGI Symbol;Acc:MGI:1932137])

HSP 1 Score: 51.2174 bits (121), Expect = 4.616e-6
Identity = 107/490 (21.84%), Postives = 159/490 (32.45%), Query Frame = 2 
Query:  437 GICEADDQCFSGVCLNMGSFKF--CSKETKIQNKVAERGRCREDSNCFSGFCNPVRS--NSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGIT------RHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCI----------KDEQCFSNFCVKDRLGKYK------FC--------AKVSRNPKLVGGGGQCLHDK-MCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYC------HKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAXXXXXXXXXXXXXP--CVRDWQCFSRYCY----FNGK---LKYCAKDGQRFG---------EVGISGP----------CRRNKDCSSSRCV 1699
            G C+   +C  GVC+    F    CS+ +  +N   +RGRC E+  C    C+P  S  +  ++ C +             C    +C +G CV   G +      R+C +         Q G C+ D +C   VC        C+  +      G GGRC+            E C +  C +D  G+ +       C          V   P      G C   + +C+ G      + + C +D            CR    C  G+CV         C             G CR    C S  C         D  T+ C  D + RG+    G C     C   F  ++ G++ C              G C  H  C +G CV       CA      +      P  C    QC +  C     ++G+   ++ C +D  + G           G +G           CRR   C   RCV
Sbjct:  207 GDCQGRGRCVKGVCVCRAGFSGPDCSQRSCPRN-CNQRGRC-EEGRC---VCDPGYSGEDCGVRSCPR------------GCSQRGRCENGLCVCNPGYSGEDCGVRNCPRG------CSQRGRCE-DGRC---VCDPGYSGEDCSMRTCPWD-CGDGGRCVDGRCVCWPGYSGEDCSTRTCPRDCRGRGRCEDGECICDAGYSGDDCGVRSCPGDCNQRGHCEDGRCVCWPGYTGADCSTRACPRD------------CRGRGRCEDGVCVCHAGYSGEDC-------GVRSCPGDCRGRGNCESGRCVCWPGYTGRDCGTRACPGDCRGRGRCV-DGRC----VCNPGFTGEDCGSRRC-------------PGDCRGHGHCENGVCV-------CAVGYSGDDCSTRSCPSDCRGRGQCLNGLCECDEGYSGEDCGIRRCPRDCSQHGVCQDGLCMCHAGYAGEDCSIRTCPADCRRRGRCEDGRCV 624
[Close]
BLAST of SMED30004081 vs. TrEMBL
Match: A0A183IMU9 (Uncharacterized protein OS=Soboliphyme baturini OX=241478 GN=SBAD_LOCUS4945 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.466e-10
Identity = 69/210 (32.86%), Postives = 92/210 (43.81%), Query Frame = 2 
Query:  758 LVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLC---VKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYCHKVDAKTKICAKD-SKFRGKVAGGGPCNSDFYCASNFCHD 1375
            L  +G  CQ ++QC SG+C  H    VCA ES     VG GG C+ D+QCFSN C        + C + S     VG GG C +D  C SG CV     +VC   +  NN + GG  C    +C  G+C   V   +   G           +   G C+ +  C S YC     +  +C +  S   GK+ G   C SD  C S  C +
Sbjct:   23 LSREGTYCQVNSQCLSGLCLGH----VCASESGSFMKVGDGGPCMLDQQCFSNMCYN------RVCGRSSVIAGRVGPGGPCRYDYNCASGRCVN----RVC---TMLNNGMFGGRQCLYGSDCDGGICENGVCVYSMSRGGAIGSLLPGSLVPDYGWCKYDTDCISNYC-----RNNLCTRRWSDGSGKLLGNERCVSDIQCYSGLCWN 210

HSP 2 Score: 63.929 bits (154), Expect = 3.870e-7
Identity = 88/349 (25.21%), Postives = 126/349 (36.10%), Query Frame = 2 
Query:  260 IFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFC---VQVAGITRHCSKDSRRIG-LVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFC------------------VKDRLGKYKFCAKVSRNPKLVGGGGQCLHDK-----MCFSGVCVTLGTMQVCA--KDSKFNNIVGGG---------------------GACRRHVECFSGLCVKQE 1156
            +  A    + +    A +   G  CQ N  C S  C+       CA +S +   K+  GG C  D QCFS +C N    + C + + I  +V   G CR D NC SG C         + C   +++   + GG  C   + C  G C   V V  ++R  +  S   G LV   G C+ D  C S  C   +  +   R S   G +    RC+ D QC+S  C                         +            +G G +C+ D       CF GVC   G   + A  +  +F+N  G G                       C R  EC S LC++ E
Sbjct:    6 LLNATVGAWLLLVAYAYLSREGTYCQVNSQCLSGLCLGHV----CASESGSFM-KVGDGGPCMLDQQCFSNMCYN----RVCGRSSVIAGRVGPGGPCRYDYNCASGRC-------VNRVC---TMLNNGMFGGRQCLYGSDCDGGICENGVCVYSMSRGGAIGSLLPGSLVPDYGWCKYDTDCISNYC---RNNLCTRRWSDGSGKLLGNERCVSDIQCYSGLCWNGVCRSGGGGGSGGGGGGASVFSNFPRTTTTFSAYSAIGRGQRCVFDNDCPFGRCFEGVCPDSGNPSLSAFLRRCRFDNDCGMGRCIDWQCVSYSDVFGSNLRDRQLCTRDSECASNLCLRGE 332

HSP 3 Score: 62.003 bits (149), Expect = 1.761e-6
Identity = 51/171 (29.82%), Postives = 74/171 (43.27%), Query Frame = 2 
Query:  668 CKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGG-----GACRRHVECFSGLCVKQENTK 1165
            C+ ++QC SG C     +   C+ +S     VG GGPC  D QCFS +C+      VC R S   G VG GG C  D  C S  CV       + C  ++     + GG QCL+   C  G+C     +   ++     +++ G      G C+   +C S  C     T+
Sbjct:   30 CQVNSQCLSGLC-----LGHVCASESGSFMKVGDGGPCMLDQQCFSNMCYNR----VCGRSSVIAGRVGPGGPCRYDYNCASGRCVN------RVCTMLNNG---MFGGRQCLYGSDCDGGICENGVCVYSMSRGGAIGSLLPGSLVPDYGWCKYDTDCISNYCRNNLCTR 182
[Close]
BLAST of SMED30004081 vs. TrEMBL
Match: A0A061H657 (Uncharacterized protein OS=Anthracocystis flocculosa PF-1 OX=1277687 GN=PFL1_06265 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.283e-7
Identity = 69/275 (25.09%), Postives = 90/275 (32.73%), Query Frame = 2 
Query:  293 HRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLN-----------------MGSFKFCSKETKIQNKVAERGRCR----------EDSNCFSGFCNPVRSNSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVC 1036
            H      RP G  C     C S +C         A Q R+   K A G  C ++D C S  C N                   +   C+K T   +   +R +C           +D+ C SG C+PV+     K C K +        G  C    QC S  C +           S+       G  C  DA C SG C     +  C   +    L  +G  C K   C S  C + +      CA    N      G  C  D  C SGVC
Sbjct:   89 HCVATAPRPAGSWCNDKSQCTSAYCA--------ANQCRD---KQANGATCTSNDVCQSATCTNGRCAAPGGGAGGGSAGPKANGAACTKSTDCTSGNCDRSKCAAKKPDGSACYKDAGCVSGICDPVK-----KTCGKPA-PPPLAANGAACTQSTQCASANCDR-----------SKCAAKKPDGSACYKDAGCVSGKC--DLVKKTCGSTATPP-LAANGASCTKSTDCASANCDRSK------CADKKAN------GVSCYKDAGCISGVC 320
[Close]
BLAST of SMED30004081 vs. TrEMBL
Match: A0A5C3FAI1 (Uncharacterized protein OS=Anthracocystis flocculosa OX=84751 GN=PSFLO_05781 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.283e-7
Identity = 69/275 (25.09%), Postives = 90/275 (32.73%), Query Frame = 2 
Query:  293 HRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLN-----------------MGSFKFCSKETKIQNKVAERGRCR----------EDSNCFSGFCNPVRSNSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVC 1036
            H      RP G  C     C S +C         A Q R+   K A G  C ++D C S  C N                   +   C+K T   +   +R +C           +D+ C SG C+PV+     K C K +        G  C    QC S  C +           S+       G  C  DA C SG C     +  C   +    L  +G  C K   C S  C + +      CA    N      G  C  D  C SGVC
Sbjct:   89 HCVATAPRPAGSWCNDKSQCTSAYCA--------ANQCRD---KQANGATCTSNDVCQSATCTNGRCAAPGGGAGGGSAGPKANGAACTKSTDCTSGNCDRSKCAAKKPDGSACYKDAGCVSGICDPVK-----KTCGKPA-PPPLAANGAACTQSTQCASANCDR-----------SKCAAKKPDGSACYKDAGCVSGKC--DLVKKTCGSTATPP-LAANGASCTKSTDCASANCDRSK------CADKKAN------GVSCYKDAGCISGVC 320
[Close]
BLAST of SMED30004081 vs. TrEMBL
Match: A0A3M9YMM1 (Uncharacterized protein OS=Verticillium nonalfalfae OX=1051616 GN=D7B24_005989 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.204e-7
Identity = 115/504 (22.82%), Postives = 149/504 (29.56%), Query Frame = 2 
Query:  320 GGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNST---MKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQV--------------AG---ITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVC----AKDSKFNNIVGG--------------GGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFC------HDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVK-IGKESFCAXXXXXXXXXXXXXPCVRDWQCFSRYCYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRC 1696
            G   C   E C S  CVK+T        S N          C A++ C    C+ + + K        +N  +E   C   S C    C P+   S       C           G   CK    C  G C  +              AG   +   C++          G  C   A C +G C   Q    C          G G  C   +QCF+  C++             ++ K  G G  C   + C  G CV++G  Q C    A      N V G              GG C    +C +G CV       G C            G  C     C +  C  VD     C          + GGPC    +CAS  C      +DN G               A G  C    +C  G C +  G E+ C              PC R   C    C         A DG   G+ G  GPC     C +  C
Sbjct:  729 GSNGCGTGEHCISGTCVKLTGDPQKCGSSTNA---------CPANNLCILNKCVPVDTGK------DPENCGSEGNVCPSGSACVRDVCIPINGGSIPPPADKCPSTCAPGTICVGTESCKTGEICIDGSCTTLTDPAACGSSGDPCPAGTFCLGDVCTRLGDPTDCDRNGLTCDAGAICAAGTCVPAQSPTNCG---------GPGQICPAGQQCFAGQCLQ------------FQDAKGCGTGIACGTGQQCIHGTCVSIGVTQDCGDTGAPCKATENCVEGSCRLLPVTGACGTTGGPCPVGNKCVAGACV----LPFGSC-------AGGASGTTCSGGRICLNGGCVAVDDPDGDCG---------STGGPCPVSSFCASGVCVGIAGPNDNCG---------------ATGAPCAAGSVCIDGSCTEATGPETPCG---------QTNEPCPRGATCVGGACLPG------AGDGDNCGDTG--GPCENGLSCIAGVC 1144
[Close]
BLAST of SMED30004081 vs. Planmine SMEST
Match: SMESG000040291.1 (SMESG000040291.1)

HSP 1 Score: 799.66 bits (2064), Expect = 0.000e+0
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 2 
Query:  236 MNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCA 1510
            MNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCA
Sbjct:    1 MNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCA 425

HSP 2 Score: 166.392 bits (420), Expect = 4.282e-45
Identity = 125/294 (42.52%), Postives = 171/294 (58.16%), Query Frame = 2 
Query:  854 KKKGLVGSGG-RCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPK-LVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVK-QENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVK--IGKESFCAXXXXXXXXXXXXXPCVRDWQCFSRYCYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSV 1720
            + + +V  GG +C K+E C S FCVK  + K  FCA  SRN +  + GGG C  D  CFSGVC+ +G+ + C+K++K  N V   G CR    CFSG C   + N+ + FC+KDS I   IGGGGIC+N+ QC S +C +V   T+ C+KDS+  G V  GGPC +D  C S  C  + G   C +ES +K G +  GG C+    C+S +CVK  +GK  FCAK S+  + +GGGG C+ D  CFS  C   G ++ CAKD +    VG  G CRR+ +C S  CV  +   +
Sbjct:   21 RTEAVVRPGGYKCQKNEDCASKFCVK--VTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARES-KKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKI 311

HSP 3 Score: 158.303 bits (399), Expect = 3.759e-42
Identity = 140/350 (40.00%), Postives = 187/350 (53.43%), Query Frame = 2 
Query:  668 CKNDNQCHSGFCVQVAGITRHCSKDSRR-IGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGK-YKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTL-GTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYCHKVD-AKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKI--GKESFCAXXXXXXXXXXXXXPCVRDWQCFSRYCY-FNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRC 1696
            C+ +  C S FCV+V      C+  SR   G +  GG C+ D QCFSGVC        C++E+K +  V   GRC +D  CFS FC   R     KFCAK S     +GGGG C +D  C SG CV + G  + C+KDS+   +VG GG C+   +CFSG+C K +   +  C+++S     +G GG C  + QCFS +C K    K K CAK S+    V GGG C  D  C S  C      + C ++S +    +  GG C  H  C+SG CVK    K  FC+K+S   + IGGGG C  + QCFSRYC+  + K K CAKD +  G+V   GPC  +  C+S+ C
Sbjct:   33 CQKNEDCASKFCVKVTK-RWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMV--CARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDS-KFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFC 378

HSP 4 Score: 142.51 bits (358), Expect = 1.497e-36
Identity = 104/265 (39.25%), Postives = 143/265 (53.96%), Query Frame = 2 
Query:  296 RTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLN--MGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGI-TRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQM-VCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSK 1078
            R   +V  GG  CQ +  C S  C K   +  CA +S+  +G +  GG C  D+QCFS  C+   +G +KFC+K ++    V   G+C  D  CFSG C  +    TM+ CAKDS     +GGGG C+   +C SG CV+        CSKDS     +G GG C+N+AQCFS  C K   +  +CA++SK +G V  GG C  D  C SNFC  +   KY    + S+ P  +  GG C++  +C+SG CV +G    CAK+SK
Sbjct:  171 RRIGLVGQGG-PCQNDAQCFSGVCFKHQGQMVCARESKK-KGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTL---GTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCV-QESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAKESK 429

HSP 5 Score: 110.923 bits (276), Expect = 8.806e-26
Identity = 87/227 (38.33%), Postives = 117/227 (51.54%), Query Frame = 2 
Query:  296 RTEAVVRPGGYKCQKNEDCASKFCVK--VTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLXXXXXXXXXXCKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQND-------------------------------------AQCFSGVCFKHQGQMVCARESKK 859
            + + +V  GG +C K+E C S FCVK  + K  FCA  SRN +  + GGG C  D  CFSGVC+ +G+ + C+K++K  N V   G CR    CFSG C   + N+ + FC+KDS I   IGGGGIC+N+ QC S +C +V   T+ C+KDS+  G V  GGPC +D                                       C+SG C K   +  CA+ESKK
Sbjct:  207 KKKGLVGSGG-RCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPK-LVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVK-QENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAKESKK 430

HSP 6 Score: 104.76 bits (260), Expect = 9.999e-24
Identity = 101/279 (36.20%), Postives = 145/279 (51.97%), Query Frame = 2 
Query:  962 VSRNPKLVGGGG-QCLHDKMCFSGVCVTLGTMQVCAKDSKFNN-IVGGGGACRRHVECFSGLCVKQENTKIGFCXXXXXXXXXXXXXXXCRNNAQCFSRYCHKV--DAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAXXXXXXXXXXXXXPCVRDWQCFSRYCYFN--GKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEGTVKVCQNSKKQKNPL 1780
            + R   +V  GG +C  ++ C S  CV +     CA  S+     + GGG C    +CFSG+C+   + K  FCSK++ I   +   G CR ++ CFS +C+ V  ++  K CAKDS   GK+ GGG C +D  C S FC    G      + S++ G + +GG C N   C+SG C K   +  CA+ESKK   +G GG C++D QCFS +C  +  GK K+CAK  +    VG  G C  +K C S  CV++         GT++VC    K  N +
Sbjct:   19 IHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFK--FCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTL---------GTMQVCAKDSKFNNIV 286
The following BLAST results are available for this feature:
BLAST of SMED30004081 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Tnxb1.386e-621.84tenascin XB [Source:MGI Symbol;Acc:MGI:1932137][more]
Tnxb2.683e-621.84tenascin XB [Source:MGI Symbol;Acc:MGI:1932137][more]
Tnxb4.616e-621.84tenascin XB [Source:MGI Symbol;Acc:MGI:1932137][more]
back to top
BLAST of SMED30004081 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A183IMU91.466e-1032.86Uncharacterized protein OS=Soboliphyme baturini OX... [more]
A0A061H6576.283e-725.09Uncharacterized protein OS=Anthracocystis flocculo... [more]
A0A5C3FAI16.283e-725.09Uncharacterized protein OS=Anthracocystis flocculo... [more]
A0A3M9YMM17.204e-722.82Uncharacterized protein OS=Verticillium nonalfalfa... [more]
back to top
BLAST of SMED30004081 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30004081 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000040291.14.282e-45100.00SMESG000040291.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004081 ID=SMED30004081|Name=SMED30004081|organism=Schmidtea mediterranea sexual|type=transcript|length=1858bp
ACAAAACGCGATAACGGGCGACCCTTGCCTCATTGTCAGTAATCAGTAAG
CTGCAAAATATCGCACTGGCCCATTGTGCACCAAAAATACATAAAATCTC
AATCCGTCGTGACCCCTGGGCTGTCCTAGATTGAAAAGGTCATTTGTGCA
AGTCCAATCACTTGATCAAAAGTCAAAAATAAGTTCTCGTATCTCATTTG
TAATATTTATTCAACTACATCATCAATTAATTGTTATGAATTCATATTTA
TTGTGGATCATTTTCACCGCAGCATTCTCCATTTACTATATCCACCGAAC
TGAAGCTGTCGTGCGACCCGGTGGCTACAAATGCCAAAAGAATGAAGACT
GTGCATCAAAATTTTGTGTCAAAGTCACGAAGCGTTGGTTTTGTGCTCCC
CAATCAAGAAACGGGAGAGGTAAAATCGCAGGAGGGGGGATTTGTGAAGC
AGATGATCAATGCTTTTCGGGAGTGTGCCTAAATATGGGAAGTTTCAAGT
TTTGCTCAAAGGAAACCAAAATTCAAAACAAAGTGGCGGAAAGAGGCAGA
TGCAGAGAAGACAGTAATTGCTTCTCTGGCTTTTGTAATCCCGTGAGATC
GAATAGCACCATGAAATTTTGTGCCAAGGACTCGTTAATCGCTGGAAAAA
TTGGGGGAGGAGGCATTTGTAAGAATGATAATCAATGTCATTCCGGTTTT
TGTGTGCAGGTTGCAGGAATTACAAGACACTGCAGTAAGGATTCAAGAAG
AATTGGACTAGTAGGCCAAGGCGGTCCGTGTCAAAATGACGCTCAATGCT
TCTCAGGAGTCTGCTTCAAGCATCAAGGCCAAATGGTTTGCGCACGTGAA
TCAAAGAAAAAAGGTCTGGTTGGAAGTGGCGGTAGATGCATAAAAGATGA
ACAATGCTTTTCAAACTTCTGTGTTAAAGATCGACTAGGAAAATACAAGT
TCTGTGCTAAGGTTTCACGCAACCCTAAACTGGTTGGTGGAGGTGGGCAA
TGTCTTCATGACAAAATGTGTTTTTCTGGTGTTTGTGTTACTCTTGGAAC
TATGCAAGTTTGCGCAAAAGACTCCAAGTTCAATAATATCGTTGGAGGAG
GAGGAGCATGCAGACGACATGTTGAATGTTTTTCTGGTCTATGTGTTAAA
CAAGAGAATACAAAAATTGGATTTTGTTCAAAGGATTCTTCTATTTTCAA
ATCTATCGGTGGAGGGGGAATCTGTAGAAACAATGCTCAGTGTTTCTCAA
GGTATTGTCACAAGGTTGATGCCAAAACAAAGATATGCGCCAAAGATTCA
AAATTTCGAGGCAAAGTGGCGGGTGGAGGCCCATGTAATTCGGATTTCTA
TTGCGCCTCAAATTTCTGTCATGACAATAATGGTACAAAGTATTGTGTTC
AAGAATCAAGTCAGAAGCCTGGATATATTGCTGAGGGAGGCTTTTGTGTC
AACCATCATTTGTGTTATTCGGGATATTGTGTAAAAATTGGAAAAGAAAG
CTTTTGTGCCAAAGAATCCAAAAAAATCGAAAAGATTGGAGGAGGAGGGC
CTTGTGTTCGAGATTGGCAATGTTTCTCTCGCTATTGCTACTTCAATGGC
AAATTAAAATATTGTGCCAAAGATGGTCAAAGGTTTGGTGAAGTTGGCAT
TAGCGGCCCATGCCGTCGGAATAAGGACTGCAGCTCATCTCGGTGTGTCA
GCATGAAAACGAAATCTGTCAATGGAACTGAAGGCACAGTAAAAGTTTGT
CAAAATTCAAAAAAACAAAAAAATCCTTTGTATAATACTATTTGAAAAAA
TTCTGAACATTTTTTATAGTTTTGTCCTGCAAATTAGAATATTTCTGTCA
AAAAATAA
back to top

protein sequence of SMED30004081-orf-1

>SMED30004081-orf-1 ID=SMED30004081-orf-1|Name=SMED30004081-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=520bp
MNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKR
WFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKV
AERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQ
CHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQM
VCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLV
GGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFS
GLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKI
CAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAE
GGFCVNHHLCYSGYCVKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRY
CYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEG
TVKVCQNSKKQKNPLYNTI*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000070intestinal phagocyte
PLANA:0000421tail
PLANA:0000429neoblast
PLANA:0002075pigment cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD936484coord: 105..276
e-value: 2.0E-4
score: 110.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.687