retinoblastoma binding protein 6

Overview


Name	retinoblastoma binding protein 6 (AKG62125.1)
Smed ID	SMED30004009
Length (bp)	3073

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of retinoblastoma binding protein 6 (SMED30004009) t-SNE clustered cells

Violin plots show distribution of expression levels for retinoblastoma binding protein 6 (SMED30004009) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of retinoblastoma binding protein 6 (SMED30004009) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for retinoblastoma binding protein 6 (SMED30004009) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004009

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
nervous system	SMED30004009	SMESG000068426.1	dd_Smed_v4_3780_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
Match: RBBP6 (RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889])

HSP 1 Score: 175.252 bits (443), Expect = 4.227e-48
Identity = 116/314 (36.94%), Postives = 170/314 (54.14%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSI---------NLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEV-SPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQ 961
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P  A+ +   I+  S SI         NLA++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + +      CP C 
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEP--AMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---EHTCPTCH 300

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
Match: RBBP6 (RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889])

HSP 1 Score: 187.193 bits (474), Expect = 5.995e-48
Identity = 122/337 (36.20%), Postives = 181/337 (53.71%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSI---------NLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEV-SPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P  A+ +   I+  S SI         NLA++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + +      CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEP--AMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---EHTCPTCHQNDVSPDALIANKFLRQAVNNFK 323

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
Match: RBBP6 (RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889])

HSP 1 Score: 183.726 bits (465), Expect = 2.030e-46
Identity = 122/337 (36.20%), Postives = 182/337 (54.01%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSI---------NLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P  A+ +   I+  S SI         NLA++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEP--AMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 323

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
Match: RBBP6 (RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889])

HSP 1 Score: 183.726 bits (465), Expect = 2.169e-46
Identity = 122/337 (36.20%), Postives = 182/337 (54.01%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSI---------NLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P  A+ +   I+  S SI         NLA++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEP--AMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 323

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
Match: RBBP6 (RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889])

HSP 1 Score: 164.851 bits (416), Expect = 1.987e-40
Identity = 122/375 (32.53%), Postives = 182/375 (48.53%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGK-EYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSI---------NLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDA--------------------------------------EAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q K EY+ ++ LIPK S +IVRR+P       K  +    ++R +P  A+ +   I+  S SI         NLA++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK     +F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DA                                      EAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEP--AMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDK-----NFESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAGRLLFHKLGTMGHKQIDTYFWNRGDVYGATATQITHLREAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 361

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Celegans
Match: rbpl-1 (Retinoblastoma Binding Protein Like [Source:UniProtKB/TrEMBL;Acc:O62235])

HSP 1 Score: 134.035 bits (336), Expect = 1.524e-31
Identity = 94/329 (28.57%), Postives = 159/329 (48.33%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKP---YGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKD--AEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCP--NCQSLIEHHTSLIEHELLRQLIQCW 1027
            S++++KF+A +   T+ FDG  I  + L   I     LK   FELQ+ +   K+   +D+LIP+ S +IV+R P+ +    +K+    +    +   A +S   ++P S+  +    N+ + E+++ +  + +  Y + NF  + +P    G PP +Y CN+C Q GHW   CP L           + KR TGIP   L+E +   P A +   GKY++PI    A    + +K +   S   +P    +  + P ++ C +C  L +      CC + YC  CI   + DP+   ++KCP  +C   I   TS+I ++ LR     W
Sbjct:    2 SSIHYKFRAELDYKTLQFDGLHIRGEQLVREICAKENLKLELFELQLQNAHTKKTYSDDELIPRNSSIIVQRFPRKDAAKVQKVQAGVNSGMVNQLDATSSF--LDPSSHISSAEFENMDEAERLNHIRDQSTRAYDQSNFR-RRQPGIMTGPPPPTYTCNRCSQPGHWYKNCPML-----------NTKRTTGIPSQELMETTVDDPDAMMHPSGKYVIPIMHWKARQETLARKNEDGSS---SPAQTSR--KVPPELLCPICQSLFKEAIVTSCCGNSYCADCIEARILDPD---NQKCPGADCGKDI-SITSIIPNKTLRDAAAAW 307

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Celegans
Match: rbpl-1 (Retinoblastoma Binding Protein Like [Source:UniProtKB/TrEMBL;Acc:O62235])

HSP 1 Score: 81.6481 bits (200), Expect = 4.396e-16
Identity = 51/174 (29.31%), Postives = 91/174 (52.30%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKP---YGIPPASYVCNKCHQGGHWIHECP 574
            S++++KF+A +   T+ FDG  I  + L   I     LK   FELQ+ +   K+   +D+LIP+ S +IV+R P+ +    +K+    +    +   A +S   ++P S+  +    N+ + E+++ +  + +  Y + NF  + +P    G PP +Y CN+C Q GHW   CP
Sbjct:    2 SSIHYKFRAELDYKTLQFDGLHIRGEQLVREICAKENLKLELFELQLQNAHTKKTYSDDELIPRNSSIIVQRFPRKDAAKVQKVQAGVNSGMVNQLDATSSF--LDPSSHISSAEFENMDEAERLNHIRDQSTRAYDQSNFR-RRQPGIMTGPPPPTYTCNRCSQPGHWYKNCP 172

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Fly
Match: snama (gene:FBgn0086129 transcript:FBtr0307174)

HSP 1 Score: 127.872 bits (320), Expect = 1.486e-30
Identity = 100/326 (30.67%), Postives = 151/326 (46.32%), Query Frame = 2

Query:   65 AVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGL-KSTDFELQILDKQGKEYSKEDD-LIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNF--LVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            +V++KFK+++   TI FDG  ISV DL+  I     L K  DF+LQI + Q KE  K+D  LIPK + LI+ R+P A+  P KK   P          A ++ P      N ++L+K    +++KI  M  + + +Y  K +  +      G  PASY CNKC + GHWI  CP +  KD      + VKR TGIP+ F        P A   +   +++P                           ++QE P  + C +C  +  +    PCC S +C+ C+   L + E     +CP+C+       SLI +  LR  +  +K
Sbjct:    2 SVHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITNAQSKEEYKDDGFLIPKNTTLIISRIPIAH--PTKKGWEPPAAE-----NAFSAAPAKQDNFN-MDLSKMQGTEEDKIQAMMMQSTVDYDPKTYHRIKGQSQVGEVPASYRCNKCKKSGHWIKNCPFVGGKDQ-----QEVKRNTGIPRSFR-----DKPDAAENESADFVLP-------------------------AVQNQEIPEDLICGICRDIFVDAVMIPCCGSSFCDDCVRTSLLESE---DSECPDCKEKNCSPGSLIPNRFLRNSVNAFK 281

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Fly
Match: snama (gene:FBgn0086129 transcript:FBtr0072249)

HSP 1 Score: 128.642 bits (322), Expect = 1.108e-29
Identity = 100/326 (30.67%), Postives = 152/326 (46.63%), Query Frame = 2

Query:   65 AVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGL-KSTDFELQILDKQGKEYSKEDD-LIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNF--LVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            +V++KFK+++   TI FDG  ISV DL+  I     L K  DF+LQI + Q KE  K+D  LIPK + LI+ R+P A+  P KK   P          A ++ P      N ++L+K    +++KI  M  + + +Y  K +  +      G  PASY CNKC + GHWI  CP +  KD      + VKR TGIP+ F        P A   +   +++P                           ++QE P  + C +C  +  +    PCC S +C+ C+   L + E +   +CP+C+       SLI +  LR  +  +K
Sbjct:    2 SVHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITNAQSKEEYKDDGFLIPKNTTLIISRIPIAH--PTKKGWEPPAAE-----NAFSAAPAKQDNFN-MDLSKMQGTEEDKIQAMMMQSTVDYDPKTYHRIKGQSQVGEVPASYRCNKCKKSGHWIKNCPFVGGKDQ-----QEVKRNTGIPRSFR-----DKPDAAENESADFVLP-------------------------AVQNQEIPEDLICGICRDIFVDAVMIPCCGSSFCDDCVRTSLLESEDS---ECPDCKEKNCSPGSLIPNRFLRNSVNAFK 281

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
Match: rbbp6 (retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5])

HSP 1 Score: 164.081 bits (414), Expect = 1.772e-40
Identity = 113/344 (32.85%), Postives = 177/344 (51.45%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPY---KAINSLPKINPYS-NSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANL-LTKEIVDSCVT 1072
            S V++KF + +   T+ FDG  I++ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +I+RR+P       K  +    + R +P    KAI+S          + NLA++N  +++KI  M  + + +Y   ++  K    G PP +Y C +C + GH+I  CP    +D      + +K+ TGIP+ F++EV  P   G  LT  G Y +P  DAEAYA+GKKEK PF  +       ++   P ++ C +C  L+ +    PCC + YC+ CI   L + E +    CP C+       +LI ++ LRQ +  +K     TK I  +  T
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHITLSDLKRQIMGREKLKAADCDLQITNAQTKEEYTDDEALIPKNSSVIIRRIPIGG---LKSTSKTYVIDRSEPSGSSKAIDSSSISLALLSKTANLAETNASEEDKIKAMMSQSNHDYDPIHYAKKL--VGPPPPNYTCFRCGKTGHYIRNCP-TNGQDRSFEAPQRIKKSTGIPRSFMVEVDDPNRKGVMLTNSGIYAIPTIDAEAYAIGKKEKPPFLPQNQSSSSEEEDPVPDELLCLICKDLMTDAVVIPCCGNSYCDDCIRTCLLESEEH---VCPTCKQSDVSPDALIANKFLRQAVNNFKNETGYTKRIRKATAT 336

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
Match: rbbp6 (retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5])

HSP 1 Score: 164.081 bits (414), Expect = 1.949e-40
Identity = 113/344 (32.85%), Postives = 177/344 (51.45%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPY---KAINSLPKINPYS-NSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANL-LTKEIVDSCVT 1072
            S V++KF + +   T+ FDG  I++ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +I+RR+P       K  +    + R +P    KAI+S          + NLA++N  +++KI  M  + + +Y   ++  K    G PP +Y C +C + GH+I  CP    +D      + +K+ TGIP+ F++EV  P   G  LT  G Y +P  DAEAYA+GKKEK PF  +       ++   P ++ C +C  L+ +    PCC + YC+ CI   L + E +    CP C+       +LI ++ LRQ +  +K     TK I  +  T
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHITLSDLKRQIMGREKLKAADCDLQITNAQTKEEYTDDEALIPKNSSVIIRRIPIGG---LKSTSKTYVIDRSEPSGSSKAIDSSSISLALLSKTANLAETNASEEDKIKAMMSQSNHDYDPIHYAKKL--VGPPPPNYTCFRCGKTGHYIRNCP-TNGQDRSFEAPQRIKKSTGIPRSFMVEVDDPNRKGVMLTNSGIYAIPTIDAEAYAIGKKEKPPFLPQNQSSSSEEEDPVPDELLCLICKDLMTDAVVIPCCGNSYCDDCIRTCLLESEEH---VCPTCKQSDVSPDALIANKFLRQAVNNFKNETGYTKRIRKATAT 336

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
Match: CR450709.4 (pep chromosome:GRCz11:CHR_ALT_CTG11_4_1:12601750:12603380:-1 gene:ENSDARG00000114547.1 transcript:ENSDART00000186933.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR450709.4)

HSP 1 Score: 102.064 bits (253), Expect = 2.283e-23
Identity = 81/249 (32.53%), Postives = 129/249 (51.81%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQG-KEYSKEDDLIPKFSDLIVRRLPKAN--DMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEY---SEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRL-LDFKSVKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENP 784
            S V+++F++ +   ++ F+G  I+V +L+  I     LK    +L+I + Q  KEY+ +D LIPK   +I+RR+P A      R+ + +    + +      +SL  +     + NLA++   +++K+  +  + S  Y   SE   L+     G+ P +YVC  C   GH I  CP    K G      K ++R TGIP+ FLLEV  P   G  +   GKY++PI DAEAYA  KK++  FS +  P
Sbjct:    2 SCVHYRFQSRLTYDSLQFEGLNITVGELKRQIMRRERLKFC--QLKISNAQTDKEYTDDDALIPKNMSVIIRRVPAAGLKSSSRRFVGHQAGPSAKSSQTGDSSLLSLEQLLKTENLAEAKASEEDKLKAVMYQSSLCYYSSSEAMTLL-----GLLPPNYVCFHCGIPGHHIRHCP---SKGGSSSASHKRIRRSTGIPRSFLLEVDDPNRKGVMMDGSGKYVIPIIDAEAYAAEKKKRPSFSCQTKP 240

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
Match: si:dkey-23f9.12 (si:dkey-23f9.12 [Source:ZFIN;Acc:ZDB-GENE-141216-30])

HSP 1 Score: 100.908 bits (250), Expect = 5.560e-23
Identity = 80/249 (32.13%), Postives = 129/249 (51.81%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQG-KEYSKEDDLIPKFSDLIVRRLPKAN--DMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEY---SEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRL-LDFKSVKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENP 784
            S V+++F++ +   ++ F+G  I+V +L+  I     LK    +L+I   Q  +EY+ +D LIPK + +I+RR+P A      R+ + +    + +      +SL  +     + NLA++   +++K+  +  + S  Y   SE   L+     G+ P +YVC  C   GH I  CP    K G      K ++R TGIP+ FLLEV  P   G  +   GKY++PI DAEAYA  KK++  FS +  P
Sbjct:    2 SCVHYRFQSRLTHDSLQFEGLNITVGELKRQIMRRERLKFC--QLKISKAQTDEEYTDDDALIPKNTSVIIRRVPAAGLKSSNRRFVGHQAGPSAKSSQTGDSSLLSLEQLLKTENLAEAQASEEDKLKAVMYQSSLCYYSSSEAMTLL-----GLLPPNYVCFHCGIPGHHIRHCP---SKGGSSSAPHKRIRRSTGIPRSFLLEVDDPNRKGVMMDGSGKYVIPIIDAEAYAAEKKKRPSFSCQTKP 240

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
Match: CR931725.1 (si:dkey-27d5.11 [Source:NCBI gene;Acc:108191591])

HSP 1 Score: 100.523 bits (249), Expect = 8.198e-23
Identity = 80/249 (32.13%), Postives = 129/249 (51.81%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQG-KEYSKEDDLIPKFSDLIVRRLPKAN--DMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEY---SEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRL-LDFKSVKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENP 784
            S V+++F++ +   ++ F+G  I+V +L+  I     LK    +L+I   Q  +EY+ +D LIPK + +I+RR+P A      R+ + +    + +      +SL  +     + NLA++   +++K+  +  + S  Y   SE   L+     G+ P +YVC  C   GH I  CP    K G      K ++R TGIP+ FLLEV  P   G  +   GKY++PI DAEAYA  KK++  FS +  P
Sbjct:    2 SCVHYRFQSRLTYDSLQFEGLNITVGELKRQIMRRERLKFC--QLKISKAQTDEEYTDDDALIPKNTSVIIRRVPAAGLKSSNRRFVGHQAGPSAKSSQTGDSSLLSLEQLLKTENLAEAKASEEDKLKAVMYQSSLCYYSSSEAMTLL-----GLLPPNYVCFHCGIPGHHIRHCP---SKGGSSSASHKRIRRSTGIPRSFLLEVDDPNRKGVMMDGSGKYVIPIIDAEAYAAEKKKRPSFSCQTKP 240

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
Match: rbbp6 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:14211598:14224196:1 gene:ENSXETG00000006787.1 transcript:ENSXETT00000020271.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbbp6)

HSP 1 Score: 139.813 bits (351), Expect = 7.564e-33
Identity = 82/220 (37.27%), Postives = 122/220 (55.45%), Query Frame = 2

Query:  386 SNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSV---KRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE-FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S++ NL ++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+SV   K+ TGIP+ F++EV  P   GA LT  GKY +P  DA AYA+GKKEK PF + E P    +D++  P ++ C +C  ++ +    PCC + YC++CI   L + E      CP C        +LI ++ LRQ +  +K
Sbjct:   23 SSTANLVEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCLKPGHYIKNCPTNGDKN-----FESVPRIKKSTGIPRSFMVEVEDPNMKGAMLTNTGKYAIPTIDAVAYAIGKKEKPPF-LPEEPASSSEDEDPIPDELLCLICKDMMSDAVVIPCCGNSYCDECIRTALLESE---DHICPTCHQPDVSPDALIANKFLRQAVNNFK 231

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
Match: rbbp6 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:14199245:14224801:1 gene:ENSXETG00000006787.1 transcript:ENSXETT00000020309.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbbp6)

HSP 1 Score: 138.658 bits (348), Expect = 2.211e-32
Identity = 82/226 (36.28%), Postives = 124/226 (54.87%), Query Frame = 2

Query:  368 PKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSV---KRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE-FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            P+     ++ NL ++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+SV   K+ TGIP+ F++EV  P   GA LT  GKY +P  DA AYA+GKKEK PF + E P    +D++  P ++ C +C  ++ +    PCC + YC++CI   L + E +    CP C        +LI ++ LRQ +  +K
Sbjct:   32 PQSGTSKSTANLVEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCLKPGHYIKNCPTNGDKN-----FESVPRIKKSTGIPRSFMVEVEDPNMKGAMLTNTGKYAIPTIDAVAYAIGKKEKPPF-LPEEPASSSEDEDPIPDELLCLICKDMMSDAVVIPCCGNSYCDECIRTALLESEDHI---CPTCHQPDVSPDALIANKFLRQAVNNFK 246

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
Match: rbbp6 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:14199245:14224801:1 gene:ENSXETG00000006787.1 transcript:ENSXETT00000020324.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbbp6)

HSP 1 Score: 138.272 bits (347), Expect = 3.145e-32
Identity = 81/220 (36.82%), Postives = 122/220 (55.45%), Query Frame = 2

Query:  386 SNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSV---KRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE-FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            + + NL ++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+SV   K+ TGIP+ F++EV  P   GA LT  GKY +P  DA AYA+GKKEK PF + E P    +D++  P ++ C +C  ++ +    PCC + YC++CI   L + E +    CP C        +LI ++ LRQ +  +K
Sbjct:   52 TKTANLVEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCLKPGHYIKNCPTNGDKN-----FESVPRIKKSTGIPRSFMVEVEDPNMKGAMLTNTGKYAIPTIDAVAYAIGKKEKPPF-LPEEPASSSEDEDPIPDELLCLICKDMMSDAVVIPCCGNSYCDECIRTALLESEDHI---CPTCHQPDVSPDALIANKFLRQAVNNFK 260

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
Match: rbbp6 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:14199607:14224801:1 gene:ENSXETG00000006787.1 transcript:ENSXETT00000020295.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbbp6)

HSP 1 Score: 128.642 bits (322), Expect = 2.387e-29
Identity = 76/202 (37.62%), Postives = 110/202 (54.46%), Query Frame = 2

Query:  440 IMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSV---KRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE-FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
             M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+SV   K+ TGIP+ F++EV  P   GA LT  GKY +P  DA AYA+GKKEK PF + E P    +D++  P ++ C +C  ++ +    PCC + YC++CI   L + E +    CP C        +LI ++ LRQ +  +K
Sbjct:    1 AMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCLKPGHYIKNCPTNGDKN-----FESVPRIKKSTGIPRSFMVEVEDPNMKGAMLTNTGKYAIPTIDAVAYAIGKKEKPPF-LPEEPASSSEDEDPIPDELLCLICKDMMSDAVVIPCCGNSYCDECIRTALLESEDHI---CPTCHQPDVSPDALIANKFLRQAVNNFK 191

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
Match: rbbp6 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:14192822:14209364:1 gene:ENSXETG00000006787.1 transcript:ENSXETT00000034208.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbbp6)

HSP 1 Score: 59.3066 bits (142), Expect = 7.846e-10
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGK-EYSKEDDLIPKFSDLIVRRLP 283
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+TD +LQI + Q + EY+ E  LIPK S +IVRR+P
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGRERLKATDCDLQITNAQTQEEYTDETVLIPKNSSVIVRRIP 76

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
Match: Rbbp6 (retinoblastoma binding protein 6, ubiquitin ligase [Source:MGI Symbol;Acc:MGI:894835])

HSP 1 Score: 179.104 bits (453), Expect = 4.943e-45
Identity = 121/338 (35.80%), Postives = 184/338 (54.44%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPY----KAIN------SLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P     KAI+      SL ++   + + NLA++N  +++KI  M  +   EY   N++ K+   G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEPVMGTTKAIDDASASISLAQL---TKTANLAEANASEEDKIKAMMSQSGHEYDPINYMKKTL-VGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 324

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
Match: Rbbp6 (retinoblastoma binding protein 6, ubiquitin ligase [Source:MGI Symbol;Acc:MGI:894835])

HSP 1 Score: 178.718 bits (452), Expect = 5.959e-45
Identity = 121/338 (35.80%), Postives = 184/338 (54.44%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPY----KAIN------SLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P     KAI+      SL ++   + + NLA++N  +++KI  M  +   EY   N++ K+   G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEPVMGTTKAIDDASASISLAQL---TKTANLAEANASEEDKIKAMMSQSGHEYDPINYMKKTL-VGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 324

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
Match: Rbbp6 (retinoblastoma binding protein 6, ubiquitin ligase [Source:MGI Symbol;Acc:MGI:894835])

HSP 1 Score: 159.844 bits (403), Expect = 4.360e-39
Identity = 121/376 (32.18%), Postives = 184/376 (48.94%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGK-EYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPY----KAIN------SLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDA--------------------------------------EAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q K EY+ ++ LIPK S +IVRR+P       K  +    ++R +P     KAI+      SL ++   + + NLA++N  +++KI  M  +   EY   N++ K+   G PP SY C +C + GH+I  CP   DK     +F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DA                                      EAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEPVMGTTKAIDDASASISLAQL---TKTANLAEANASEEDKIKAMMSQSGHEYDPINYMKKTL-VGPPPPSYTCFRCGKPGHYIKNCPTNGDK-----NFESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAGRLLFHKLGTMGHKQIDTYLWNRGDVYGAAATQITHLREAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 362

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
Match: Rbbp6 (retinoblastoma binding protein 6, ubiquitin ligase [Source:MGI Symbol;Acc:MGI:894835])

HSP 1 Score: 58.5362 bits (140), Expect = 3.269e-10
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGK-EYSKEDDLIPKFSDLIVRRLP 283
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q K EY+ ++ LIPK S +IVRR+P
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIP 76

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
Match: Rbbp6 (retinoblastoma binding protein 6, ubiquitin ligase [Source:MGI Symbol;Acc:MGI:894835])

HSP 1 Score: 58.5362 bits (140), Expect = 8.415e-10
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGK-EYSKEDDLIPKFSDLIVRRLP 283
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q K EY+ ++ LIPK S +IVRR+P
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIP 76

[Close]

BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
Match: sp|Q7Z6E9|RBBP6_HUMAN (E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.042e-45
Identity = 122/337 (36.20%), Postives = 182/337 (54.01%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSI---------NLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P  A+ +   I+  S SI         NLA++N  +++KI  M  +   EY   N++   KP G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEP--AMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYM--KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 323

[Close]

BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
Match: sp|P97868|RBBP6_MOUSE (E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5)

HSP 1 Score: 178.718 bits (452), Expect = 4.169e-44
Identity = 121/338 (35.80%), Postives = 184/338 (54.44%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPY----KAIN------SLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKS---VKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            S V++KF + +   T+ FDG  IS+ DL+  I     LK+ D +LQI + Q KE Y+ ++ LIPK S +IVRR+P       K  +    ++R +P     KAI+      SL ++   + + NLA++N  +++KI  M  +   EY   N++ K+   G PP SY C +C + GH+I  CP   DK+     F+S   +K+ TGIP+ F++EV  P   GA LT  GKY +P  DAEAYA+GKKEK PF  EE      +D   P ++ C +C  ++ +    PCC + YC++CI   L + + +    CP C        +LI ++ LRQ +  +K
Sbjct:    2 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGG---VKSTSKTYVISRTEPVMGTTKAIDDASASISLAQL---TKTANLAEANASEEDKIKAMMSQSGHEYDPINYMKKTL-VGPPPPSYTCFRCGKPGHYIKNCPTNGDKN-----FESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH---TCPTCHQNDVSPDALIANKFLRQAVNNFK 324

[Close]

BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
Match: sp|O94264|YORF_SCHPO (Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP8B7.15c PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.380e-25
Identity = 98/340 (28.82%), Postives = 150/340 (44.12%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGS-AISVKDLRSAI----RLSCGLKSTDFELQILDKQG-KEYSKEDDLIPKFSDLIVRRLPK-----------ANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSE---------------KNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDK--DGRLLDFKSVKRPTGIPQDFLLEVSPGTPG----AYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQ 961
            MS  +Y+KFK+      I FDG+  +SV D++  I    +L  GL   DF+L + +    +EY  +  +IP+ + +IVRR+P             +  P+   A  + + R  P   +     I    ++IN + S+  +D  I  M +  S+++ E               +  +  S P   PP  Y+C +C Q GHWI  CP   D   DG+      VKR TGIP+ FL  V     G      +  EG Y+V   D  ++   +  K   +  +    V K Q     + C+LC KL  N    PCC  ++CE+CI   L D +     +CPNC 
Sbjct:    1 MSGVIYYKFKSQKDPSRITFDGTIGMSVFDVKREIIMQKKLGNGL---DFDLLLYNANSNEEYDDDTFIIPRSTSVIVRRVPAQKSGKGTAARYVSGAPKTTGARSDSVKR--PVPMLQKKAPITSGESNINKSPSSS-EDAAIQQMFQVSSDQWRETQDKMASATPIYKPNQRRIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPNYDGK----PRVKRTTGIPRSFLKNVERPAEGDAANIMINAEGDYVVVQPDVASWETYQSRKAALTAND----VYKMQPPNISLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDF----ECPNCH 322

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BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
Match: sp|P35728|MPE1_YEAST (Protein MPE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPE1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 86/339 (25.37%), Postives = 155/339 (45.72%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLK-STDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLP--KANDMPRKKIANPEDMTRRDPYKAINSLPKI---NPYSNSINLAKSNIPDDEKIDIM-------AKRCSEEYSEKN-FLVKSKP--------YGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFL--LEVSPGTPG--------AYLTKEGKYMVPIKDAEAYA--MGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPT-CAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQS 964
            MSS ++++FK+      I FDG+ ++V DL+  I     L   TDF+L+I +   +E Y  +  +IP+ + +IV+R P  K+  +  +   N       +  + +   P++     ++ +     S   ++E+I  M        ++  EE S       KS+          G PP  Y+C +C    HWI  CP   D +    + K ++R TGIP+ FL  +E+ P T            +T EGK++V ++D +++     K+E R    +E        ++ P  +KC L   LL  P   + CC+  + ++ + + L + +      CPNC++
Sbjct:    1 MSSTIFYRFKSQRNTSRILFDGTGLTVFDLKREIIQENKLGDGTDFQLKIYNPDTEEEYDDDAFVIPRSTSVIVKRSPAIKSFSVHSRLKGNVGAAALGNATRYVTGRPRVLQKRQHTATTTANVSGTTEEERIASMFATQENQWEQTQEEMSAATPVFFKSQTNKNSAQENEGPPPPGYMCYRCGGRDHWIKNCPTNSDPN---FEGKRIRRTTGIPKKFLKSIEIDPETMTPEEMAQRKIMITDEGKFVVQVEDKQSWEDYQRKRENRQIDGDETIWRKGHFKDLPDDLKCPLTGGLLRQPVKTSKCCNIDFSKEALENALVESDF----VCPNCET 332

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BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
Match: sp|F4JP52|PQT3_ARATH (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-12
Identity = 89/335 (26.57%), Postives = 138/335 (41.19%), Query Frame = 2

Query:   65 AVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKST-DFELQILDKQ-GKEYSKEDDLIPKFSD-------------LIVRRLPKANDMPRKKIANPEDMTRRDPYKA----------INSLPKINPYSNSINLAKSNIP-DDEKIDIMA----------KRCSEEYSEKNFLVKSKPYG-----------IPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTP-GAYLTKEGKYMV--PIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAP-CCSSVYCEKCITDYL 916
            A+Y+KFK++    TI  DG  I+V  L+  I  +  L S  D ++ I + Q  +EY  E  LIPK +              +I R  P+  D      A+  ++   D              + S+P   P  +S NL   + P DDE+  + A          ++ ++ +       +                 PP  YVC++C+  GH+I  C    + +    D K VK PTGIP+  L+     TP G+Y    G   V  P +DA    M        S+           EFP ++KC LC +++ +   A  CC   YC+KCI D++
Sbjct:    2 AIYYKFKSARDYDTISMDGPFITVGLLKEKIYETKHLGSGKDLDIVISNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRIRIITREEPRVEDKVENVQADMNNVITADASPVEDEFDEFGNDLYSIPDA-PAVHSNNLCHDSAPADDEETKLKALIDTPALDWHQQGADSFGPGRGYGRGMAGRMGGRGFGMERTTPPPGYVCHRCNVSGHFIQHCSTNGNPN---FDVKRVKPPTGIPKSMLM----ATPNGSYSLPSGAVAVLKPNEDAFEKEMEGLTSTTRSV----------GEFPPELKCPLCKEVMRDAALASKCCLKSYCDKCIRDHI 318

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BLAST of retinoblastoma binding protein 6 vs. TrEMBL
Match: A0A0F7GWV9 (Retinoblastoma binding protein 6 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 1618.98 bits (4191), Expect = 0.000e+0
Identity = 912/918 (99.35%), Postives = 913/918 (99.46%), Query Frame = 2

Query:   41 FLLTLMSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKXXXXXXXXXXXXXXXFEKVQDFEGXXXXXXXXXXXXXDSEKNIGQKSINDQNLKIETVVKRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTIMNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSMYNNLPLHSMFGATLNPTTNTXXXXXXXXXXXXXXXXXXXXLTKEEFYERQRKLRAEKMKQKYRENSKSPSGSQSPRKHXXXXXXXXXXXXXXXXXNLNRQYKVPYPDNKHXXXXXXXXXXXXXXXXXXXNYHSPKDRGSFKSDFSNSDIKAIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYHASEYXXXXXXXXXXXXLISEDKPXXXXXXXXXXXXPKISRDRMEDNQRSMINTTKQHANNPRNDDICYPEQKLEIKKEVIPNKSAKYHTGVSAIVPAENNIYMYDKCDTVSLPALKPGTLM 2794
            F LTLMSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNE +  SPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKIVNNNLNDIDVNDLIFEKVQDFEGVEENNVEKHENVVDSEKNIGQKSINDQNLKIETVVKRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTIMNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSMYNNLPLHSMFGATLNPTTNTSNWINNGINIPPPPISNSRILTKEEFYERQRKLRAEKMKQKYRENSKSPSGSQSPRKHKSRSKYRDYKDKYEKKYNLNRQYKVPYPDNKHRDSKDEYDERESRSRHRRSNYHSPKDRGSFKSDFSNSDIKAIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYHASEYRSNKNNRSSKSKLISEDKPRVSRVLSRSRSVPKISRDRMEDNQRSMINTTKQHANNPRNDDICYPEQKLEIKKEVIPNKSAKYHTGVS IVPAENNIYMYDKCDTVSLPALKPGTLM
Sbjct:    3 FYLTLMSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEVNCASPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKIVNNNLNDIDVNDLIFEKVQDFEGVEENNVEKHENVVDSEKNIGQKSINDQNLKIETVVKRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTIMNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSMYNNLPLHSMFGATLNPTTNTSNWINNGINIPPPPISNSRILTKEEFYERQRKLRAEKMKQKYRENSKSPSGSQSPRKHKSRSKYRDYKDKYEKKYNLNRQYKVPYPDNKHRDSKDEYDERESRSRHRRSNYHSPKDRGSFKSDFSNSDIKAIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYHASEYRSNKNNRSSKSKLISEDKPRVSRVLSRSRSVPKISRDRMEDNQRSMINTTKQHANNPRNDDICYPEQKLEIKKEVIPNKSAKYHTGVSVIVPAENNIYMYDKCDTVSLPALKPGTLM 920

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BLAST of retinoblastoma binding protein 6 vs. TrEMBL
Match: C7TZR6 (Retinoblastoma-binding protein 6 (Fragment) OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 4.039e-125
Identity = 197/395 (49.87%), Postives = 268/395 (67.85%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPK-ANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQS-LIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPK 1234
            MSS VYFKFKA++K  ++ FDGS+ISVKDL++AIR  C L STDF+L++ D  GK YSK+D+LIPK+S ++VRR+P+   +  +KK   P+++T R+  +      + +  S  INLA S++ ++EKI +M +R SE YSE NF V++KPYG+PPA+Y+C+KC+Q GHWIH CPG+RDK G+++D K VKRPTGIPQDFLLEV+ GTPGAYL K GKYMVPIKDAEAYA GKK+KRPFS+EENPPYVP+++  P ++ C LC KL  +     CC + YC +CI  +++D +V GS KCPNC + L +H +S+ E+ L+R LI+ W A+    +I+D  V                              D+  ++   E E  FVN RRVLKPK
Sbjct:    1 MSSIVYFKFKANVKTDSVSFDGSSISVKDLKNAIRTKCCLYSTDFDLKLEDTTGKTYSKDDELIPKYSSIVVRRVPRLVAESQKKKQLGPDELTWRELQRGQTVTSEASHGSKPINLADSDLSEEEKIKLMMERSSETYSETNFTVRAKPYGVPPAAYICHKCNQPGHWIHNCPGVRDKTGKVMDAKLVKRPTGIPQDFLLEVAAGTPGAYLGKSGKYMVPIKDAEAYAQGKKDKRPFSVEENPPYVPQERNPPKQLICPLCSKLFSDAVLVSCCGTTYCNECIMGHVFDSQVLGSHKCPNCDAVLTDHESSVFENALVRSLIRDWLAD--GSKIMDPEVVIPG--------------------------DIAMIN---ENETAFVNCRRVLKPK 364

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BLAST of retinoblastoma binding protein 6 vs. TrEMBL
Match: A0A4S2MBY9 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001135 PE=4 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 2.064e-124
Identity = 214/441 (48.53%), Postives = 286/441 (64.85%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYK-AINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQS-LIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKS 1372
            MSS VYFKFKA++K  +IPFDGS+ISVKDL++AIR  C L STDF+L++ D  GK Y+K+D+LIPK++ ++VRR+PK     +KK   P+D+  R+  K A  + P++      +NLA S++P++EKI IM +R SE YSEKNF VK KPYG+PPA+Y+C+KC   GHWIH CPG+RDK G+++D KSVKRPTGIPQDFLLEV  GTPGAYL K GKYMVPIKDAEAYA GKK+KRPFS+EENPPYVP +++ P +  C LC  +  +     CC + YC +CI  +++D +V GS KCPNC + L +H +S+ E+ L+R +I+ W AN     + DS  + L                 PD+   +             TEK F+NNRRVLKPK         P     ST D Q N ++    + + + V ++EN V S
Sbjct:    1 MSSIVYFKFKANVKTDSIPFDGSSISVKDLKNAIRTKCCLYSTDFDLKLEDTNGKSYNKDDELIPKYTSIVVRRVPKLTTEIQKKKPTPDDLPWRESVKNATAANPQV---PKHVNLADSDLPEEEKIKIMMERSSEAYSEKNFAVKPKPYGVPPAAYICHKCGLPGHWIHNCPGVRDKTGKMMDVKSVKRPTGIPQDFLLEVDAGTPGAYLGKSGKYMVPIKDAEAYAQGKKDKRPFSVEENPPYVPSERKPPKQFICPLCNDMFRDAVLVSCCGTTYCNECILGHVFDSQVLGSHKCPNCGAVLTDHESSVFENALVRSMIRDWLAN--EAALPDSDASVLQ----------------PDIFKVNI------------TEKAFINNRRVLKPKQALSSTPVPPGKPSDSTSDIQKNTDS---PVALSEDVTTVENVVSS 405

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BLAST of retinoblastoma binding protein 6 vs. TrEMBL
Match: A0A5J4N706 (E3 ubiquitin-protein ligase RBBP6 OS=Paragonimus westermani OX=34504 GN=DEA37_0013786 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 4.108e-124
Identity = 185/333 (55.56%), Postives = 246/333 (73.87%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPK-ANDMPRKKIANPEDMTRRDPYKAINSLPKIN----PYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLI-EHHTSLIEHELLRQLIQCWKAN 1036
            MSS VYFKFKA++K  T+ FDGSAISVKDL+SAIR  C L STDF+L++ D  GK Y+K+D+LIPK++ ++VRR+PK  ++  ++KI   ED+    P+K  N   +IN     +   +NLA S++P++EKI IM +R SE YSEKNF VK+KPYG+PPA+Y+C+KC   GHWIH CPG+RDK G+++D KSVKRPTGIPQDFLLEV  GTPGAYL K GKYMVPIKDAEAYA GKK+KRPFS+EENPPY P ++  P +  C LC  L        CC + YC +CI  +++D ++ GS KCPNC++++ +H +S+ E+ L+R +I+ W AN
Sbjct:    1 MSSIVYFKFKANVKTDTVQFDGSAISVKDLKSAIRTKCCLYSTDFDLKLEDTNGKAYTKDDELIPKYTSIVVRRVPKLTSETQKRKITTSEDL----PWKE-NQRAQINMNDAGFQKHVNLADSDLPEEEKIKIMMERSSETYSEKNFTVKAKPYGVPPAAYICHKCGLPGHWIHNCPGVRDKSGKMMDIKSVKRPTGIPQDFLLEVEAGTPGAYLGKSGKYMVPIKDAEAYAQGKKDKRPFSVEENPPYFPSERIPPKQFICPLCGGLFREAVLVSCCGTTYCNECIMGHVFDAQILGSHKCPNCEAILNDHESSVFENALVRSMIRDWLAN 328

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BLAST of retinoblastoma binding protein 6 vs. TrEMBL
Match: A0A4S2MBY4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001135 PE=4 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 7.930e-124
Identity = 214/441 (48.53%), Postives = 287/441 (65.08%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYK-AINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQS-LIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKS 1372
            MSS VYFKFKA++K  +IPFDGS+ISVKDL++AIR  C L STDF+L++ D  GK Y+K+D+LIPK++ ++VRR+PK     +KK   P+D+  R+  K A  + P++  +   +NLA S++P++EKI IM +R SE YSEKNF VK KPYG+PPA+Y+C+KC   GHWIH CPG+RDK G+++D KSVKRPTGIPQDFLLEV  GTPGAYL K GKYMVPIKDAEAYA GKK+KRPFS+EENPPYVP +++ P +  C LC  +  +     CC + YC +CI  +++D +V GS KCPNC + L +H +S+ E+ L+R +I+ W AN     + DS  + L                 PD+   +             TEK F+NNRRVLKPK         P     ST D Q N ++    + + + V ++EN V S
Sbjct:    1 MSSIVYFKFKANVKTDSIPFDGSSISVKDLKNAIRTKCCLYSTDFDLKLEDTNGKSYNKDDELIPKYTSIVVRRVPKLTTEIQKKKPTPDDLPWRESVKNATAANPQVPKH---VNLADSDLPEEEKIKIMMERSSEAYSEKNFAVKPKPYGVPPAAYICHKCGLPGHWIHNCPGVRDKTGKMMDVKSVKRPTGIPQDFLLEVDAGTPGAYLGKSGKYMVPIKDAEAYAQGKKDKRPFSVEENPPYVPSERKPPKQFICPLCNDMFRDAVLVSCCGTTYCNECILGHVFDSQVLGSHKCPNCGAVLTDHESSVFENALVRSMIRDWLAN--EAALPDSDASVLQ----------------PDIFKVNI------------TEKAFINNRRVLKPKQALSSTPVPPGKPSDSTSDIQKNTDSP---VALSEDVTTVENVVSS 405

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BLAST of retinoblastoma binding protein 6 vs. Ensembl Cavefish
Match: rbbp6 (retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5])

HSP 1 Score: 125.176 bits (313), Expect = 1.637e-28
Identity = 78/237 (32.91%), Postives = 121/237 (51.05%), Query Frame = 2

Query:  350 KAINSLPKIN--PYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE--------FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            KA++  P I+    S + NLA++N  +++KI  M  + + EY      + +K  G PP +Y C +C + GH+I  CP    +D      + VKR TGIP+ F++EV     GA LT  G Y +P  D EAYA+GKKEK        PP++PK+Q          P ++ C +C  L+ +    PCC + YC++  ++ L   E      CP C        +LI ++ LRQ +  ++
Sbjct:   11 KAMDDPPTISLAQLSKTANLAEANASEEDKIRAMMSQSNHEYD----PIFTKKLGPPPPNYTCFRCGKNGHYIRNCP-TNGQDKSFEAPQRVKRSTGIPRSFMMEVDQSMKGAMLTNTGTYAIPTID-EAYALGKKEK--------PPFLPKEQSSSSEDEDPVPDELLCLICKDLMTDAVVIPCCGNSYCDEIRSNLLESEEHT----CPTCNQSEVSPDALIANKFLRQAVNNFR 229

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BLAST of retinoblastoma binding protein 6 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010453.1 (pep scaffold:Pmarinus_7.0:GL483937:7299:12919:1 gene:ENSPMAG00000009464.1 transcript:ENSPMAT00000010453.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 132.88 bits (333), Expect = 3.446e-35
Identity = 78/209 (37.32%), Postives = 117/209 (55.98%), Query Frame = 2

Query:  392 SINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVS-PGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQL 1015
            + N+A++N  +++KI  +  +  ++Y   N++ KS+  G PP+SY C +C + GH+I  CP   DK    L    +K+ TGIP  F+ EV+ P   GA LT  GKY VP  DA+AYA+GKKEK PF  E++     +D   P ++ C LC  L+ +    PCC + YC+ C+   L D E      CP C        +LI +++LRQ+
Sbjct:   22 TANIAEANASEEDKIKAVMNQSGQDYDPVNYVKKSQ--GPPPSSYTCYRCLKPGHYIKNCPLNADKSYEAL--PRLKKSTGIPLSFMTEVNDPSIKGAMLTNTGKYAVPTIDAQAYAVGKKEKPPFVTEQSSSSSDED-PIPDELLCLLCKDLMVDAVVIPCCGNSYCDDCVRTVLLDSE---DHTCPTCHQSDVSPDALIANKVLRQV 222

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BLAST of retinoblastoma binding protein 6 vs. Ensembl Yeast
Match: MPE1 (Essential conserved subunit of CPF cleavage and polyadenylation factor; plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA; contains a ubiquitin-like (UBL) domain, a RNA-binding zinc knuckle motif and a RING finger domain; both the zinc knuckle and RING finger are required for pre-mRNA binding; possible role in ubiquitination of Pap1p; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000001542])

HSP 1 Score: 100.138 bits (248), Expect = 1.446e-22
Identity = 86/339 (25.37%), Postives = 155/339 (45.72%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLK-STDFELQILDKQGKE-YSKEDDLIPKFSDLIVRRLP--KANDMPRKKIANPEDMTRRDPYKAINSLPKI---NPYSNSINLAKSNIPDDEKIDIM-------AKRCSEEYSEKN-FLVKSKP--------YGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFL--LEVSPGTPG--------AYLTKEGKYMVPIKDAEAYA--MGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPT-CAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQS 964
            MSS ++++FK+      I FDG+ ++V DL+  I     L   TDF+L+I +   +E Y  +  +IP+ + +IV+R P  K+  +  +   N       +  + +   P++     ++ +     S   ++E+I  M        ++  EE S       KS+          G PP  Y+C +C    HWI  CP   D +    + K ++R TGIP+ FL  +E+ P T            +T EGK++V ++D +++     K+E R    +E        ++ P  +KC L   LL  P   + CC+  + ++ + + L + +      CPNC++
Sbjct:    1 MSSTIFYRFKSQRNTSRILFDGTGLTVFDLKREIIQENKLGDGTDFQLKIYNPDTEEEYDDDAFVIPRSTSVIVKRSPAIKSFSVHSRLKGNVGAAALGNATRYVTGRPRVLQKRQHTATTTANVSGTTEEERIASMFATQENQWEQTQEEMSAATPVFFKSQTNKNSAQENEGPPPPGYMCYRCGGRDHWIKNCPTNSDPN---FEGKRIRRTTGIPKKFLKSIEIDPETMTPEEMAQRKIMITDEGKFVVQVEDKQSWEDYQRKRENRQIDGDETIWRKGHFKDLPDDLKCPLTGGLLRQPVKTSKCCNIDFSKEALENALVESDF----VCPNCET 332

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Nematostella
Match: EDO35476 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SLE2])

HSP 1 Score: 60.077 bits (144), Expect = 3.330e-11
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 2

Query:   62 SAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGL-KSTDFELQILDKQGKEYSKEDDL-IPKFSDLIVRRLPKAN 292
            S +++KF++S++  T+ FDG  IS+ DL+ AI       K+TDF+L+I + Q KE  K++ + IPK S +I+RR+P   
Sbjct:    2 SCIHYKFRSSLEYDTVTFDGLGISLADLKKAIMAQKKFGKTTDFDLEITNAQTKEVYKDESVQIPKNSSVIIRRIPTGT 80

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Nematostella
Match: EDO35477 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SLE3])

HSP 1 Score: 51.2174 bits (121), Expect = 5.004e-8
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 2

Query:  746 KKEKRPFSI--EENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQL 1015
            KKE  P ++    + P    D++ PS+++C +C  LL +    PCC + YC++CI  YL + E    ++CP C +      SLI ++ LRQ+
Sbjct:    1 KKEDGPKTLVPAADVPAAKADRKVPSELRCPMCKNLLTDTVLIPCCGTSYCDECIRTYLLENE----QECPTCGAESVSPDSLIINKQLRQV 88

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Medaka
Match: ENSORLT00000010826.2 (E3 ubiquitin-protein ligase RBBP6 [Source:NCBI gene;Acc:101160962])

HSP 1 Score: 148.673 bits (374), Expect = 8.739e-36
Identity = 93/282 (32.98%), Postives = 143/282 (50.71%), Query Frame = 2

Query:  221 EYSKEDDLIPKFSDLIVRRLPKANDMP--RKKIANPEDMTRRDPYKAINSLPKIN--PYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE--------FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            EY+ ++  IPK + +IVRR P     P  R  I +  D +     +  +S P ++    + + NL  +N  +++KI  M  + + +Y   N+  K+   G PPA Y C +C + GH+I +CP    +D      K VK   GIPQ F+++  PGT GA LT  G+Y +P  DAEAYA GKKE+        PP+VP +Q          P ++ C +C  L+ +    PCC + YC++CI   L D E +    C +C        +LI ++ LRQ +  +K
Sbjct:   19 EYTDDEAHIPKHASVIVRRTPLGGVKPAGRTFIVDRSDTSVVGSSRPTDSSPSLSLAQLAKTANLVDANASEEDKIKAMMTQSNHDYDPANYSKKA--IGPPPAHYTCFRCGKAGHYIRQCPLPVVQDKSADGPKPVKISKGIPQSFMVKADPGTKGAMLTSTGEYAIPAIDAEAYAQGKKER--------PPFVPHEQSSSEDDTDPIPDELLCPICNDLMTDAVVIPCCGNSYCDECIRTALLDSEEH---ICSSCNQSDVSPDNLIANKFLRQAVNNFK 287

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Medaka
Match: ENSORLT00000042274.1 (E3 ubiquitin-protein ligase RBBP6 [Source:NCBI gene;Acc:101160962])

HSP 1 Score: 148.673 bits (374), Expect = 1.018e-35
Identity = 93/282 (32.98%), Postives = 143/282 (50.71%), Query Frame = 2

Query:  221 EYSKEDDLIPKFSDLIVRRLPKANDMP--RKKIANPEDMTRRDPYKAINSLPKIN--PYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQE--------FPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            EY+ ++  IPK + +IVRR P     P  R  I +  D +     +  +S P ++    + + NL  +N  +++KI  M  + + +Y   N+  K+   G PPA Y C +C + GH+I +CP    +D      K VK   GIPQ F+++  PGT GA LT  G+Y +P  DAEAYA GKKE+        PP+VP +Q          P ++ C +C  L+ +    PCC + YC++CI   L D E +    C +C        +LI ++ LRQ +  +K
Sbjct:   19 EYTDDEAHIPKHASVIVRRTPLGGVKPAGRTFIVDRSDTSVVGSSRPTDSSPSLSLAQLAKTANLVDANASEEDKIKAMMTQSNHDYDPANYSKKA--IGPPPAHYTCFRCGKAGHYIRQCPLPVVQDKSADGPKPVKISKGIPQSFMVKADPGTKGAMLTSTGEYAIPAIDAEAYAQGKKER--------PPFVPHEQSSSEDDTDPIPDELLCPICNDLMTDAVVIPCCGNSYCDECIRTALLDSEEH---ICSSCNQSDVSPDNLIANKFLRQAVNNFK 287

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Medaka
Match: ENSORLT00000046531.1 (RB binding protein 6, ubiquitin ligase [Source:NCBI gene;Acc:101161731])

HSP 1 Score: 60.8474 bits (146), Expect = 8.191e-9
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 2

Query:  725 AEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWK 1030
            +EAYA+GKKE+ PF  ++ P    +D   P ++ C +C  LL++     CC + YC+ CI   L D + +    CP C        SL  ++ LRQ +  +K
Sbjct:   56 SEAYAIGKKERPPFLPQKQPKSESEDDPVPDELLCLICRDLLDDAVVIHCCRNSYCDDCIRTTLLDSDDH---VCPTCGQSSVSPDSLTANKFLRQAVNNFK 154

[Close]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Medaka
Match: ENSORLT00000046422.1 (pep primary_assembly:ASM223467v1:8:17582882:17589405:1 gene:ENSORLG00000028464.1 transcript:ENSORLT00000046422.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.5286 bits (127), Expect = 4.165e-8
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = 2

Query:   68 VYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGK-EYSKEDDLIPKFSDLIVRRLP 283
            +++KF + +   T+ FDG  I++ DL+  I     L++ D +LQI + Q K EY+++++LI K S +IVRR+P
Sbjct:    4 IHYKFSSKLSYDTVVFDGPHITLTDLKRRIMGREKLRAGDCDLQITNAQTKEEYTEDEELISKGSSVIVRRIP 76

[Close]

BLAST of retinoblastoma binding protein 6 vs. Planmine SMEST
Match: SMESG000068426.1 (SMESG000068426.1)

HSP 1 Score: 1614.36 bits (4179), Expect = 0.000e+0
Identity = 910/913 (99.67%), Postives = 910/913 (99.67%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKXXXXXXXXXXXXXXXFEKVQDFEGXXXXXXXXXXXXXDSEKNIGQKSINDQNLKIETVVKRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTIMNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSMYNNLPLHSMFGATLNPTTNTXXXXXXXXXXXXXXXXXXXXLTKEEFYERQRKLRAEKMKQKYRENSKSPSGSQSPRKHXXXXXXXXXXXXXXXXXNLNRQYKVPYPDNKHXXXXXXXXXXXXXXXXXXXNYHSPKDRGSFKSDFSNSDIKAIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYHASEYXXXXXXXXXXXXLISEDKPXXXXXXXXXXXXPKISRDRMEDNQRSMINTTKQHANNPRNDDICYPEQKLEIKKEVIPNKSAKYHTGVSAIVPAENNIYMYDKCDTVSLPALKPGTLM 2794
            MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKIVNNNLNDIDVNDLIFEKVQDFEGVEENNVEKHENVVDSEKNIGQKSINDQNLKIETVVKRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTIMNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSMYNNLPLHSMFGATLNPTTNTSNWINNGINIPPPPISNSRILTKEEFYERQRKLRAEKMKQKYRENSKSPSGSQSPRKHKSRSKYRDYKDKYEKKYNLNRQYKVPYPDNKHRDSKDEYDERESRSRHRRSNYHSPKDRGSFKSDFSNSDIKAIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYH SEYRSNKNNRSSKSKLISEDKPRVSRVLSRSRSVPKISRDRMEDNQRSMINTTKQHANNPRNDDICYPEQKLEIKKEVIPNK AKYHTGVSAIVPAENNIYMYDKCDTVSLPA KPGTLM
Sbjct:    1 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTELNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRTDSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKIVNNNLNDIDVNDLIFEKVQDFEGVEENNVEKHENVVDSEKNIGQKSINDQNLKIETVVKRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTIMNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSMYNNLPLHSMFGATLNPTTNTSNWINNGINIPPPPISNSRILTKEEFYERQRKLRAEKMKQKYRENSKSPSGSQSPRKHKSRSKYRDYKDKYEKKYNLNRQYKVPYPDNKHRDSKDEYDERESRSRHRRSNYHSPKDRGSFKSDFSNSDIKAIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYHTSEYRSNKNNRSSKSKLISEDKPRVSRVLSRSRSVPKISRDRMEDNQRSMINTTKQHANNPRNDDICYPEQKLEIKKEVIPNKLAKYHTGVSAIVPAENNIYMYDKCDTVSLPAPKPGTLM 913

[Close]

BLAST of retinoblastoma binding protein 6 vs. Planmine SMEST
Match: SMESG000023195.1 (SMESG000023195.1)

HSP 1 Score: 276.944 bits (707), Expect = 3.390e-81
Identity = 150/341 (43.99%), Postives = 211/341 (61.88%), Query Frame = 2

Query:   56 MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYS--KEDDLIPKFSDLIVRRLP-----KANDMPRKKIANPEDMTRRDPYKAINSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPYGIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLLEVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYV--PKDQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNG-SRKCPNCQSLIEHHTSLIEHELLRQLIQCWKANLLTK 1048
            MS  VY+KFK+ + Q  IPF+GS ISVK+L  AIR        +  + + D   KE     E++LIP FS++I++RLP     K N +  KKIANPE+ ++ DPYK  N    +N +   INL  S++ +++K+D + +  +  Y     + K  PYG PP++Y CNKC+  GHWI+ CPG+ DK+G+L+D + VKRP+GIP   L+EV   TP +YLT +G+Y+V IK+ +A   GKK+KRPFSIEENPP V  PK+ E P  + C LC  L+  PT   CC++ YC  CITD+L+DPE +    +CPNC   I+    LI+   L  LI  WK + + K
Sbjct:    1 MSKLVYYKFKSELNQQQIPFEGSNISVKELTDAIRKKHSNSHCNLVVYMKDIISKEERACSENELIPAFSNVIIKRLPLTDQSKHNKI--KKIANPENFSKVDPYKNANEKESLNIFK-RINLNSSSMTEEQKVDTVIESAATNYR---IVGKRNPYGTPPSTYTCNKCNIPGHWINNCPGIPDKNGKLIDSRQVKRPSGIPVCGLVEVDENTPNSYLTPDGRYVVNIKNRDALLKGKKDKRPFSIEENPPLVKQPKN-EIPENMVCRLCSNLITAPTKTACCNNTYCRNCITDHLFDPENSTMMHQCPNCLGKIDKLDELIDDSELENLIHIWKISKIPK 334

[Close]

BLAST of retinoblastoma binding protein 6 vs. Planmine SMEST
Match: SMESG000064788.1 (SMESG000064788.1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.371e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 2

Query:  800 DQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLIE-HHTSLIEHELLRQLIQCWKANLLTKEIV 1057
            +Q  P  +KC LC +L+++     CC   YC +CIT YL+DP+++GS +CP+C+S++     +L+++  +R+ +   + N  T+E +
Sbjct:  130 EQSIPDILKCCLCNQLMKDSMQIKCCKKSYCHECITGYLFDPDISGSLECPDCKSIVSIKDANLVDNMKIRRNVDTVEDNPSTEEFL 216

HSP 2 Score: 51.2174 bits (121), Expect = 3.398e-6
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 2

Query:   68 VYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKA 289
            V +KFK+S+    I F  S+I+V  L+  I     +K++ F+L++ D  GK Y+ +D+ I   S +IV R+PK 
Sbjct:    4 VQYKFKSSLSFEIIKFSESSITVGVLKDLINQKQSIKTSGFDLKLKDTHGKIYTNDDEAIDLKSKIIVSRVPKV 77

[Close]

BLAST of retinoblastoma binding protein 6 vs. Planmine SMEST
Match: SMESG000064788.1 (SMESG000064788.1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.239e-11
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 2

Query:  800 DQEFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPNCQSLI 970
            +Q  P  +KC LC +L+++     CC   YC +CIT YL+DP+++GS +CP+C+S++
Sbjct:  129 EQSIPDILKCCLCNQLMKDSMQIKCCKKSYCHECITGYLFDPDISGSLECPDCKSIV 185

HSP 2 Score: 51.6026 bits (122), Expect = 3.146e-6
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 2

Query:   68 VYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQILDKQGKEYSKEDDLIPKFSDLIVRRLPKA 289
            V +KFK+S+    I F  S+I+V  L+  I     +K++ F+L++ D  GK Y+ +D+ I   S +IV R+PK 
Sbjct:    4 VQYKFKSSLSFEIIKFSESSITVGVLKDLINQKQSIKTSGFDLKLKDTHGKIYTNDDEAIDLKSKIIVSRVPKV 77

The following BLAST results are available for this feature:

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
BLAST of retinoblastoma binding protein 6 vs. Ensembl Celegans
BLAST of retinoblastoma binding protein 6 vs. Ensembl Fly
BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
BLAST of retinoblastoma binding protein 6 vs. TrEMBL
BLAST of retinoblastoma binding protein 6 vs. Ensembl Cavefish
BLAST of retinoblastoma binding protein 6 vs. Ensembl Sea Lamprey
BLAST of retinoblastoma binding protein 6 vs. Ensembl Yeast
BLAST of retinoblastoma binding protein 6 vs. Ensembl Nematostella
BLAST of retinoblastoma binding protein 6 vs. Ensembl Medaka
BLAST of retinoblastoma binding protein 6 vs. Planmine SMEST

BLAST of retinoblastoma binding protein 6 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBBP6	4.227e-48	36.94	RB binding protein 6, ubiquitin ligase [Source:HGN...	[more]
RBBP6	5.995e-48	36.20	RB binding protein 6, ubiquitin ligase [Source:HGN...	[more]
RBBP6	2.030e-46	36.20	RB binding protein 6, ubiquitin ligase [Source:HGN...	[more]
RBBP6	2.169e-46	36.20	RB binding protein 6, ubiquitin ligase [Source:HGN...	[more]
RBBP6	1.987e-40	32.53	RB binding protein 6, ubiquitin ligase [Source:HGN...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rbpl-1	1.524e-31	28.57	Retinoblastoma Binding Protein Like [Source:UniPr...	[more]
rbpl-1	4.396e-16	29.31	Retinoblastoma Binding Protein Like [Source:UniPr...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
snama	1.486e-30	30.67	gene:FBgn0086129 transcript:FBtr0307174	[more]
snama	1.108e-29	30.67	gene:FBgn0086129 transcript:FBtr0072249	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbbp6	1.772e-40	32.85	retinoblastoma binding protein 6 [Source:ZFIN;Acc:...	[more]
rbbp6	1.949e-40	32.85	retinoblastoma binding protein 6 [Source:ZFIN;Acc:...	[more]
CR450709.4	2.283e-23	32.53	pep chromosome:GRCz11:CHR_ALT_CTG11_4_1:12601750:1...	[more]
si:dkey-23f9.12	5.560e-23	32.13	si:dkey-23f9.12 [Source:ZFIN;Acc:ZDB-GENE-141216-3...	[more]
CR931725.1	8.198e-23	32.13	si:dkey-27d5.11 [Source:NCBI gene;Acc:108191591]	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbbp6	7.564e-33	37.27	pep primary_assembly:Xenopus_tropicalis_v9.1:9:142...	[more]
rbbp6	2.211e-32	36.28	pep primary_assembly:Xenopus_tropicalis_v9.1:9:141...	[more]
rbbp6	3.145e-32	36.82	pep primary_assembly:Xenopus_tropicalis_v9.1:9:141...	[more]
rbbp6	2.387e-29	37.62	pep primary_assembly:Xenopus_tropicalis_v9.1:9:141...	[more]
rbbp6	7.846e-10	45.33	pep primary_assembly:Xenopus_tropicalis_v9.1:9:141...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbbp6	4.943e-45	35.80	retinoblastoma binding protein 6, ubiquitin ligase...	[more]
Rbbp6	5.959e-45	35.80	retinoblastoma binding protein 6, ubiquitin ligase...	[more]
Rbbp6	4.360e-39	32.18	retinoblastoma binding protein 6, ubiquitin ligase...	[more]
Rbbp6	3.269e-10	44.00	retinoblastoma binding protein 6, ubiquitin ligase...	[more]
Rbbp6	8.415e-10	44.00	retinoblastoma binding protein 6, ubiquitin ligase...	[more]

BLAST of retinoblastoma binding protein 6 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q7Z6E9\|RBBP6_HUMAN	1.042e-45	36.20	E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens ...	[more]
sp\|P97868\|RBBP6_MOUSE	4.169e-44	35.80	E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus ...	[more]
sp\|O94264\|YORF_SCHPO	5.380e-25	28.82	Uncharacterized RING finger protein P8B7.15c OS=Sc...	[more]
sp\|P35728\|MPE1_YEAST	1.004e-20	25.37	Protein MPE1 OS=Saccharomyces cerevisiae (strain A...	[more]
sp\|F4JP52\|PQT3_ARATH	1.483e-12	26.57	E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabid...	[more]

BLAST of retinoblastoma binding protein 6 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0F7GWV9	0.000e+0	99.35	Retinoblastoma binding protein 6 OS=Schmidtea medi...	[more]
C7TZR6	4.039e-125	49.87	Retinoblastoma-binding protein 6 (Fragment) OS=Sch...	[more]
A0A4S2MBY9	2.064e-124	48.53	Uncharacterized protein OS=Opisthorchis felineus O...	[more]
A0A5J4N706	4.108e-124	55.56	E3 ubiquitin-protein ligase RBBP6 OS=Paragonimus w...	[more]
A0A4S2MBY4	7.930e-124	48.53	Uncharacterized protein OS=Opisthorchis felineus O...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rbbp6	1.637e-28	32.91	retinoblastoma binding protein 6 [Source:ZFIN;Acc:...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000010453.1	3.446e-35	37.32	pep scaffold:Pmarinus_7.0:GL483937:7299:12919:1 ge...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
MPE1	1.446e-22	25.37	Essential conserved subunit of CPF cleavage and po...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO35476	3.330e-11	40.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35477	5.004e-8	33.70	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of retinoblastoma binding protein 6 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSORLT00000010826.2	8.739e-36	32.98	E3 ubiquitin-protein ligase RBBP6 [Source:NCBI gen...	[more]
ENSORLT00000042274.1	1.018e-35	32.98	E3 ubiquitin-protein ligase RBBP6 [Source:NCBI gen...	[more]
ENSORLT00000046531.1	8.191e-9	33.33	RB binding protein 6, ubiquitin ligase [Source:NCB...	[more]
ENSORLT00000046422.1	4.165e-8	38.36	pep primary_assembly:ASM223467v1:8:17582882:175894...	[more]

BLAST of retinoblastoma binding protein 6 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000068426.1	0.000e+0	99.67	SMESG000068426.1	[more]
SMESG000023195.1	3.390e-81	43.99	SMESG000023195.1	[more]
SMESG000064788.1	1.371e-11	33.33	SMESG000064788.1	[more]
SMESG000064788.1	5.239e-11	42.11	SMESG000064788.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30004009
GenBank	AKG62125.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004009 ID=SMED30004009|Name=retinoblastoma binding protein 6|organism=Schmidtea mediterranea sexual|type=transcript|length=3073bp
TTTACAAACACGTCGCCATTAATTAAAAATCTTAATTGATTTTTTATTAA
CTTTAATGTCATCGGCGGTTTATTTTAAATTTAAAGCTTCTATTAAGCAG
TATACTATACCATTTGATGGCTCGGCTATTTCAGTTAAAGATTTGAGAAG
TGCGATAAGATTATCTTGTGGACTAAAATCAACTGATTTTGAATTGCAAA
TTCTCGATAAACAAGGAAAAGAGTATTCAAAAGAAGATGATCTAATCCCA
AAATTTAGTGACTTGATTGTTAGGCGTCTACCTAAAGCTAATGATATGCC
TAGGAAAAAGATTGCAAATCCTGAAGATATGACTCGAAGGGATCCGTATA
AAGCTATTAATTCACTTCCGAAAATAAATCCTTACAGTAATTCAATAAAT
TTAGCAAAGTCTAATATTCCAGACGATGAAAAGATTGACATTATGGCTAA
AAGATGCTCAGAGGAATACTCAGAAAAAAACTTTCTTGTCAAATCTAAGC
CATATGGAATACCACCTGCATCTTATGTATGTAACAAATGCCATCAAGGT
GGCCATTGGATTCACGAGTGTCCAGGCTTACGTGATAAAGACGGTCGACT
GCTTGATTTTAAATCCGTTAAACGTCCAACTGGAATACCACAAGATTTCT
TATTGGAAGTTTCTCCGGGAACTCCAGGAGCTTATCTGACAAAGGAGGGC
AAATATATGGTTCCAATTAAAGATGCCGAGGCATATGCAATGGGTAAAAA
AGAAAAGAGACCATTTTCAATAGAAGAAAACCCTCCTTATGTTCCTAAAG
ATCAAGAATTTCCATCGAAAATTAAATGTTCTCTTTGTTGTAAATTACTT
GAGAATCCGACTTGTGCGCCGTGCTGTTCATCGGTTTATTGTGAAAAATG
TATTACTGATTATTTGTATGATCCCGAAGTTAATGGTTCACGAAAATGTC
CGAATTGTCAATCACTTATCGAGCATCACACATCTCTCATTGAACATGAG
TTGTTGCGTCAATTAATTCAATGTTGGAAAGCTAATTTGTTAACCAAAGA
AATCGTCGATAGTTGCGTAACTACGCTGAACCATTCTTCCAATAAAAAAA
CTGAACTTAATGAAGATTCTAGTAAATCTCCTGATATGAAATATGAATCA
GCTAACACGGACGTTGATAGTCTATCGAATAAAGCAGAAACCGAAAAGGT
TTTTGTTAATAACAGACGGGTATTGAAACCTAAAACAGTCAGCCTTATTC
GAACTGATTCACCAAGTAATATCAAACCTTCTACTCCAGATAAACAGAAC
AATGCTGAAAACAAGATTGATGCTATAAATATCATAGACCCTGTTAAAAG
TATAGAAAATGAAGTAAAATCAGAAAAAATTGTCAACAATAATCTTAATG
ATATCGACGTTAACGATTTAATATTTGAAAAAGTTCAAGATTTTGAAGGA
GTCGAAGAAAATAATGTTGAAAAACATGAGAATGTTGTGGATTCTGAAAA
GAATATTGGTCAGAAATCAATTAATGATCAGAATTTAAAAATAGAAACCG
TAGTTAAACGAAATGATAATGGAATTAAAAACTCATTGGATAGAAAAGTC
GATACAGTAAAAGGAAACTCCAGCTCACATAATTCCAGAATGGATAATAT
GAAAGGGCATATAGGCAATGATTTGTCATCGATGCATCAACCTTTCAGTA
CAATAATGAATCCTGGAGTGGATACCACAACTCATTTAATAAATCATTTC
CCTACAACAACTCATTTAGCTACTTCGGTTCAACAACAATTCCTTAACAA
TCCAATTCATATGAACACTTTAGAACCATTGCAGTGGCCTTTGATTAACT
CAATGTATAATAACTTGCCTTTACACTCAATGTTTGGAGCAACTCTTAAT
CCGACTACTAACACATCCAACTGGATAAATAATGGAATTAATATTCCCCC
ACCTCCGATAAGTAATTCTAGAATTCTTACAAAGGAAGAATTTTATGAGC
GGCAGCGAAAACTAAGAGCAGAAAAAATGAAGCAGAAATATCGTGAGAAT
TCTAAATCTCCATCAGGTAGTCAATCACCAAGGAAACATAAATCTCGATC
GAAGTATCGTGATTATAAAGATAAATACGAAAAGAAATATAATTTAAACA
GACAGTACAAAGTTCCTTATCCAGATAATAAACATCGTGACAGTAAGGAT
GAATATGATGAAAGAGAATCGAGATCCAGACATCGTCGATCAAATTATCA
TTCCCCAAAAGATCGCGGATCTTTTAAATCTGATTTTTCTAATTCAGATA
TAAAAGCCATAGATCCAAAGCTAATGGAAGATTCTATAAATACATTTCTC
AAGTATTTAACAGTGAATCCTGATGACAAGCGAGATTCGGTTAATGAGAA
AAGCCATGAAGATAATTCCTCGAGATATCATGCAAGTGAATATCGATCCA
ATAAGAACAATCGTAGTTCTAAATCGAAATTAATTTCCGAGGATAAACCA
CGTGTCTCAAGAGTTCTGAGTCGTAGTCGAAGTGTTCCAAAGATATCGAG
AGATCGCATGGAAGATAATCAGAGATCGATGATAAATACTACCAAACAAC
ATGCAAATAATCCGAGAAATGATGACATTTGTTATCCGGAGCAGAAATTA
GAGATTAAAAAAGAAGTTATCCCAAACAAATCAGCAAAATATCACACAGG
GGTTAGTGCAATCGTTCCAGCAGAGAATAACATATACATGTACGATAAGT
GTGATACTGTGTCACTCCCTGCACTGAAACCGGGAACTTTAATGAAAGAG
AAAAAAACGAAAAAATCAAAACATCGAGATCATTCCGATGACGATGACAC
TAAACGAAAAAGGAAACATAAAAAACATAAGCATAAAAAAGTCAAGAAAA
TTAAAAAAGAGAAAAAAGATGATTAATATTGGTCTTTCTTATTGTCATAA
TTGTATTGTTGAATAAAATTGTAAATATTTCTCTTGTGTATTTAGCAGAT
GCTTCTATTTAGTGCTGATTAACTAGTTATAATTTATTGTTGTGTAATAT
ATCAGGTGATGATGCAATTAATC

protein sequence of SMED30004009-orf-1

>SMED30004009-orf-1 ID=SMED30004009-orf-1|Name=SMED30004009-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=957bp
MSSAVYFKFKASIKQYTIPFDGSAISVKDLRSAIRLSCGLKSTDFELQIL
DKQGKEYSKEDDLIPKFSDLIVRRLPKANDMPRKKIANPEDMTRRDPYKA
INSLPKINPYSNSINLAKSNIPDDEKIDIMAKRCSEEYSEKNFLVKSKPY
GIPPASYVCNKCHQGGHWIHECPGLRDKDGRLLDFKSVKRPTGIPQDFLL
EVSPGTPGAYLTKEGKYMVPIKDAEAYAMGKKEKRPFSIEENPPYVPKDQ
EFPSKIKCSLCCKLLENPTCAPCCSSVYCEKCITDYLYDPEVNGSRKCPN
CQSLIEHHTSLIEHELLRQLIQCWKANLLTKEIVDSCVTTLNHSSNKKTE
LNEDSSKSPDMKYESANTDVDSLSNKAETEKVFVNNRRVLKPKTVSLIRT
DSPSNIKPSTPDKQNNAENKIDAINIIDPVKSIENEVKSEKIVNNNLNDI
DVNDLIFEKVQDFEGVEENNVEKHENVVDSEKNIGQKSINDQNLKIETVV
KRNDNGIKNSLDRKVDTVKGNSSSHNSRMDNMKGHIGNDLSSMHQPFSTI
MNPGVDTTTHLINHFPTTTHLATSVQQQFLNNPIHMNTLEPLQWPLINSM
YNNLPLHSMFGATLNPTTNTSNWINNGINIPPPPISNSRILTKEEFYERQ
RKLRAEKMKQKYRENSKSPSGSQSPRKHKSRSKYRDYKDKYEKKYNLNRQ
YKVPYPDNKHRDSKDEYDERESRSRHRRSNYHSPKDRGSFKSDFSNSDIK
AIDPKLMEDSINTFLKYLTVNPDDKRDSVNEKSHEDNSSRYHASEYRSNK
NNRSSKSKLISEDKPRVSRVLSRSRSVPKISRDRMEDNQRSMINTTKQHA
NNPRNDDICYPEQKLEIKKEVIPNKSAKYHTGVSAIVPAENNIYMYDKCD
TVSLPALKPGTLMKEKKTKKSKHRDHSDDDDTKRKRKHKKHKHKKVKKIK
KEKKDD*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **biological process**
Term	Definition
GO:0006397	mRNA processing
GO:0016567	protein ubiquitination

Vocabulary: **molecular function**
Term	Definition
GO:0061630	ubiquitin protein ligase activity
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding
GO:0005515	protein binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000099	neuron

Vocabulary: **INTERPRO**
Term	Definition
IPR033489	RBBP6
IPR036875	Znf_CCHC_sf
IPR014891	DWNN_domain
IPR013083	Znf_RING/FYVE/PHD
IPR001878	Znf_CCHC
IPR001841	Znf_RING

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014891	DWNN domain	SMART	SM01180	DWNN_2	coord: 5..76 e-value: 3.2E-24 score: 96.5
IPR014891	DWNN domain	PFAM	PF08783	DWNN	coord: 5..76 e-value: 2.5E-18 score: 66.1
IPR014891	DWNN domain	PROSITE	PS51282	DWNN	coord: 5..76 score: 18.474
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 245..334 e-value: 1.7E-11 score: 45.6
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 153..204 e-value: 7.5E-14 score: 53.7
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..79 e-value: 9.0E-22 score: 78.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 775..839
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 935..949
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 657..742
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 704..726
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 348..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 904..956
None	No IPR available	PANTHER	PTHR15439:SF0	E3 UBIQUITIN-PROTEIN LIGASE RBBP6	coord: 1..953
None	No IPR available	CDD	cd16620	vRING-HC-C4C4_RBBP6	coord: 253..301 e-value: 1.09229E-10 score: 55.3277
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 250..326
IPR033489	E3 ubiquitin-protein ligase RBBP6 family	PANTHER	PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	coord: 1..953
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 258..302 score: 9.893
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 148..179