Innexin

Overview
NameInnexin
Smed IDSMED30003995
Length (bp)391
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30003995

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30003995SMESG000001158.1 SmedASXL_019855SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
head regionSMED30003995SMESG000001158.1 dd_Smed_v6_50550_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Innexin vs. Ensembl Celegans
Match: eat-5 (Innexin eat-5 [Source:UniProtKB/Swiss-Prot;Acc:Q27295])

HSP 1 Score: 60.8474 bits (146), Expect = 1.105e-11
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  210 SQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            S  S  K R DD   DRLNY YS+L+++     +T RQ VG P+QCW+P +FT+ WE+Y 
Sbjct:    6 SMFSMVKPRLDDLGTDRLNYYYSTLIIMGMSLTITARQYVGSPLQCWVPAQFTKAWEQYA 65
[Close]
BLAST of Innexin vs. Ensembl Celegans
Match: eat-5 (Innexin eat-5 [Source:UniProtKB/Swiss-Prot;Acc:Q27295])

HSP 1 Score: 60.8474 bits (146), Expect = 1.105e-11
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  210 SQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            S  S  K R DD   DRLNY YS+L+++     +T RQ VG P+QCW+P +FT+ WE+Y 
Sbjct:    6 SMFSMVKPRLDDLGTDRLNYYYSTLIIMGMSLTITARQYVGSPLQCWVPAQFTKAWEQYA 65
[Close]
BLAST of Innexin vs. Ensembl Celegans
Match: inx-1 (Innexin [Source:UniProtKB/TrEMBL;Acc:Q17394])

HSP 1 Score: 60.4622 bits (145), Expect = 1.285e-11
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  234 RFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            R DDD VD+LNY Y+S ++     +++ +Q VG PIQCW+P +FT  WE+YT
Sbjct:   16 RVDDDFVDKLNYHYTSAIIFAFAIIVSAKQYVGYPIQCWVPAQFTDAWEQYT 67
[Close]
BLAST of Innexin vs. Ensembl Celegans
Match: inx-1 (Innexin [Source:UniProtKB/TrEMBL;Acc:Q17394])

HSP 1 Score: 60.4622 bits (145), Expect = 1.285e-11
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  234 RFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            R DDD VD+LNY Y+S ++     +++ +Q VG PIQCW+P +FT  WE+YT
Sbjct:   16 RVDDDFVDKLNYHYTSAIIFAFAIIVSAKQYVGYPIQCWVPAQFTDAWEQYT 67
[Close]
BLAST of Innexin vs. Ensembl Celegans
Match: inx-1 (Innexin [Source:UniProtKB/TrEMBL;Acc:Q17394])

HSP 1 Score: 60.077 bits (144), Expect = 1.800e-11
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  234 RFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            R DDD VD+LNY Y+S ++     +++ +Q VG PIQCW+P +FT  WE+YT
Sbjct:   16 RVDDDFVDKLNYHYTSAIIFAFAIIVSAKQYVGYPIQCWVPAQFTDAWEQYT 67
[Close]
BLAST of Innexin vs. UniProt/SwissProt
Match: sp|Q27295|EAT5_CAEEL (Innexin eat-5 OS=Caenorhabditis elegans OX=6239 GN=eat-5 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.406e-10
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  210 SQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            S  S  K R DD   DRLNY YS+L+++     +T RQ VG P+QCW+P +FT+ WE+Y 
Sbjct:    6 SMFSMVKPRLDDLGTDRLNYYYSTLIIMGMSLTITARQYVGSPLQCWVPAQFTKAWEQYA 65
[Close]
BLAST of Innexin vs. UniProt/SwissProt
Match: sp|Q03412|UNC7_CAEEL (Innexin unc-7 OS=Caenorhabditis elegans OX=6239 GN=unc-7 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.357e-8
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:  234 RFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            R DDD VD+LNY Y++ +L     L++ +Q VG PIQCW+P  FT   E+YT
Sbjct:  136 RLDDDFVDKLNYYYTTTILASFALLVSAKQYVGFPIQCWVPATFTDAMEQYT 187
[Close]
BLAST of Innexin vs. UniProt/SwissProt
Match: sp|O01393|UNC9_CAEEL (Innexin unc-9 OS=Caenorhabditis elegans OX=6239 GN=unc-9 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.035e-8
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  210 SQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            S V   +   DDD +D+LNY Y++ ++ +   L++ +Q VG PIQCW+P  FT+  E+YT
Sbjct:   10 SAVKSIQFHVDDDIIDKLNYYYTTAIITVFAILVSAKQYVGFPIQCWVPATFTEPMEQYT 69
[Close]
BLAST of Innexin vs. UniProt/SwissProt
Match: sp|Q19746|INX3_CAEEL (Innexin-3 OS=Caenorhabditis elegans OX=6239 GN=inx-3 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 2.589e-7
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:  243 DDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            DDAVDRL+Y  ++ LL     +++ +Q VG  IQCW+P EF  GWE+Y 
Sbjct:   21 DDAVDRLSYVTTATLLAFFSIMVSCKQYVGSAIQCWMPMEFKGGWEQYA 69
[Close]
BLAST of Innexin vs. UniProt/SwissProt
Match: sp|O61788|INX17_CAEEL (Innexin-17 OS=Caenorhabditis elegans OX=6239 GN=inx-17 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.863e-7
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 3 
Query:  237 FDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            +D DA+DRL Y ++  LL  S   +  +Q VG+ IQCW P++F  GWEEY 
Sbjct:   16 YDSDAIDRLRYYFTVFLLTSSAFFIMAKQYVGQSIQCWAPKQFKGGWEEYA 66
[Close]
BLAST of Innexin vs. TrEMBL
Match: Q2L6N1 (Innexin OS=Dugesia japonica OX=6161 GN=inx3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.460e-25
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:   90 MSRGQFRDLVLTGDRRRSSFS----------GFGIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            MSRGQ RD++  G+ RR SFS          G     D+D TFF++L +L ++  +K+RFDDD VDRLNY+++ LLL M IGL+ IRQ VGKPIQCWIPQEFT+GWEEYT
Sbjct:    1 MSRGQIRDILSAGEVRRPSFSHIVQSGSPVPGGDCSGDMDATFFWRLSKLGRIGSNKLRFDDDFVDRLNYQFTGLLLFMFIGLIGIRQYVGKPIQCWIPQEFTRGWEEYT 110
[Close]
BLAST of Innexin vs. TrEMBL
Match: A0A1I8I373 (Innexin OS=Macrostomum lignano OX=282301 GN=inx PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.007e-18
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:  171 DVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEY 386
            ++D TF ++L +L ++   K+RFDDD  DRLNY+++ ++L + IGL+ IRQ VGKPIQCWIPQEFT+GWEEY
Sbjct: 1402 EMDATFMWKLSKLGRIGSSKLRFDDDFADRLNYQFTGVILFLFIGLIGIRQYVGKPIQCWIPQEFTRGWEEY 1473

HSP 2 Score: 56.9954 bits (136), Expect = 1.074e-6
Identity = 24/47 (51.06%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:  246 DAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEY 386
            D +D+LNY+++  L++M I ++ +RQ VGKPIQCW+PQEF++ WE++
Sbjct:  913 DFIDQLNYQFTGGLMIMFIAVIGLRQYVGKPIQCWVPQEFSKAWEDF 959
[Close]
BLAST of Innexin vs. TrEMBL
Match: A0A4S2LXD4 (Innexin OS=Opisthorchis felineus OX=147828 GN=inx PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.131e-18
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 3 
Query:  144 SFSGF--GIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEY 386
            SF G   G    +D TF ++L +L ++   ++RFDDD  DRLNY+Y+ +L+ + IGL+ IRQ VGKPIQCWIPQEFT+GWEEY
Sbjct:   62 SFGGHDHGAATAMDATFVWKLSKLGRIGSSRLRFDDDFADRLNYQYTGVLMFLFIGLIGIRQYVGKPIQCWIPQEFTRGWEEY 144
[Close]
BLAST of Innexin vs. TrEMBL
Match: A0A183AGS5 (Innexin OS=Echinostoma caproni OX=27848 GN=inx PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.245e-18
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 3 
Query:   54 NLTSIFSVS*LFMSRGQFRDLVLTGDRRRSSFSGFGIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            N TS+F    LF S+ + RD    G + R     +   P +D  F + L +L ++   +++FDDD  DRLNY+Y+ +LL + IGL+ +RQ VGKPIQCWIPQEFT+GWEEY 
Sbjct:    9 NFTSLFHPDHLFSSQIKTRD----GLKIRIVREQWLYVPRMDAAFIWNLSKLGRIGSRRLQFDDDFADRLNYQYTGVLLFLFIGLIGVRQYVGKPIQCWIPQEFTRGWEEYA 116
[Close]
BLAST of Innexin vs. TrEMBL
Match: A0A074ZHH4 (Innexin OS=Opisthorchis viverrini OX=6198 GN=inx PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 9.321e-18
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 3 
Query:  174 VDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEY 386
            +D TF ++L +L ++   ++RFDDD  DRLNY+Y+ +L+ + IGL+ IRQ VGKPIQCWIPQEFT+GWEEY
Sbjct:    1 MDATFVWKLSKLGRIGSSRLRFDDDFADRLNYQYTGVLMFLFIGLIGIRQYVGKPIQCWIPQEFTRGWEEY 71
[Close]
BLAST of Innexin vs. Planmine SMEST
Match: SMESG000001158.1 (SMESG000001158.1)

HSP 1 Score: 181.03 bits (458), Expect = 6.361e-56
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 3 
Query:   90 MSRGQFRDLVLTGDRRRSSFSGFGIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            MSRGQFRDLVLTGDRRRSSFSGFGIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYSSLLLLMSIGLLTIRQNVGKPIQCWIPQEFTQGWEEYT
Sbjct:    1 MSRGQFRDLVLTGDRRRSSFSGFGIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYSSLLLLMSIGLLTIRQNVGKPIQCWIPQEFTQGWEEYT 100
[Close]
BLAST of Innexin vs. Planmine SMEST
Match: SMESG000060499.1 (SMESG000060499.1)

HSP 1 Score: 102.449 bits (254), Expect = 2.015e-26
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 3 
Query:   90 MSRGQFRDLVLTGDRRRSSFSGF----------GIFPDVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            MSRGQ RD++  G+ RR SFS                D+D TFF++L +L ++  +K+RFDDD VDRLNY+++ LLL M IGL+ IRQ VGKPIQCWIPQEFT+GWEEYT
Sbjct:    1 MSRGQIRDILSAGEVRRPSFSHIVQSGSPVPGGDCGGDMDGTFFWRLSKLGRIGSNKLRFDDDFVDRLNYQFTGLLLFMFIGLIGIRQYVGKPIQCWIPQEFTRGWEEYT 110
[Close]
BLAST of Innexin vs. Planmine SMEST
Match: SMESG000045304.1 (SMESG000045304.1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.256e-22
Identity = 41/71 (57.75%), Postives = 61/71 (85.92%), Query Frame = 3 
Query:  174 VDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEY 386
            +D TF ++LG+L ++  +++R+DDD VDRLNY+++ ++L + IGL++IRQ +GKPIQCWIPQEFT+GWEEY
Sbjct:    1 MDATFVWKLGKLGRLGSNRLRYDDDFVDRLNYQFTGVILFLFIGLVSIRQYIGKPIQCWIPQEFTRGWEEY 71
[Close]
BLAST of Innexin vs. Planmine SMEST
Match: SMESG000059204.1 (SMESG000059204.1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.008e-19
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 3 
Query:  174 VDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEY 386
            +D TF ++L +L ++    +R+DDD +DRLNY+ + +LL + IG++ IRQ VGKPIQCW PQEFT+GWEEY
Sbjct:    1 MDATFVWKLAKLGRLGSSHLRYDDDFIDRLNYQVTGILLFLFIGIIGIRQYVGKPIQCWSPQEFTRGWEEY 71
[Close]
BLAST of Innexin vs. Planmine SMEST
Match: SMESG000048827.1 (SMESG000048827.1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.055e-17
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 3 
Query:  171 DVDNTFFFQLGRLSQVSEDKIRFDDDAVDRLNYKYXXXXXXXXXXXXTIRQNVGKPIQCWIPQEFTQGWEEYT 389
            D+D  F +   +L +     +R DDD  DRLNYK SSLL+   I L+ +RQ VGKPIQCWIPQEFT+GWEEY+
Sbjct:   34 DLDCNFLWNFNKLGRWGSRHLRSDDDMADRLNYKVSSLLMFGFISLIGLRQYVGKPIQCWIPQEFTRGWEEYS 106
The following BLAST results are available for this feature:
BLAST of Innexin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
eat-51.105e-1148.33Innexin eat-5 [Source:UniProtKB/Swiss-Prot;Acc:Q2... [more]
eat-51.105e-1148.33Innexin eat-5 [Source:UniProtKB/Swiss-Prot;Acc:Q2... [more]
inx-11.285e-1150.00Innexin [Source:UniProtKB/TrEMBL;Acc:Q17394][more]
inx-11.285e-1150.00Innexin [Source:UniProtKB/TrEMBL;Acc:Q17394][more]
inx-11.800e-1150.00Innexin [Source:UniProtKB/TrEMBL;Acc:Q17394][more]
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BLAST of Innexin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q27295|EAT5_CAEEL1.406e-1048.33Innexin eat-5 OS=Caenorhabditis elegans OX=6239 GN... [more]
sp|Q03412|UNC7_CAEEL1.357e-850.00Innexin unc-7 OS=Caenorhabditis elegans OX=6239 GN... [more]
sp|O01393|UNC9_CAEEL2.035e-841.67Innexin unc-9 OS=Caenorhabditis elegans OX=6239 GN... [more]
sp|Q19746|INX3_CAEEL2.589e-748.98Innexin-3 OS=Caenorhabditis elegans OX=6239 GN=inx... [more]
sp|O61788|INX17_CAEEL2.863e-747.06Innexin-17 OS=Caenorhabditis elegans OX=6239 GN=in... [more]
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BLAST of Innexin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q2L6N13.460e-2557.27Innexin OS=Dugesia japonica OX=6161 GN=inx3 PE=2 S... [more]
A0A1I8I3732.007e-1858.33Innexin OS=Macrostomum lignano OX=282301 GN=inx PE... [more]
A0A4S2LXD47.131e-1855.42Innexin OS=Opisthorchis felineus OX=147828 GN=inx ... [more]
A0A183AGS57.245e-1846.43Innexin OS=Echinostoma caproni OX=27848 GN=inx PE=... [more]
A0A074ZHH49.321e-1859.15Innexin OS=Opisthorchis viverrini OX=6198 GN=inx P... [more]
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BLAST of Innexin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Innexin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000001158.16.361e-56100.00SMESG000001158.1[more]
SMESG000060499.12.015e-2656.36SMESG000060499.1[more]
SMESG000045304.15.256e-2257.75SMESG000045304.1[more]
SMESG000059204.17.008e-1954.93SMESG000059204.1[more]
SMESG000048827.13.055e-1756.16SMESG000048827.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003995 ID=SMED30003995|Name=Innexin|organism=Schmidtea mediterranea sexual|type=transcript|length=391bp
TTTAGGCAACATTGTAAATTTCATGGACTCACTATCAGTGATATGATAAA
CAAAATCTAACATCTATTTTCTCAGTGAGCTAGCTTTTCATGAGTAGAGG
ACAATTTCGTGATCTTGTTTTGACTGGAGATAGACGTCGAAGTAGTTTTT
CGGGTTTCGGAATATTTCCCGATGTCGACAATACGTTCTTTTTTCAACTG
GGCAGATTGAGCCAAGTCAGTGAAGATAAGATCCGATTTGATGACGACGC
CGTGGATAGATTGAATTATAAATATTCCTCTTTGTTGTTGTTGATGTCGA
TTGGTTTGTTGACAATTCGTCAAAATGTCGGAAAACCAATTCAATGTTGG
ATTCCTCAAGAGTTTACTCAAGGATGGGAAGAATATACCGG
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protein sequence of SMED30003995-orf-1

>SMED30003995-orf-1 ID=SMED30003995-orf-1|Name=SMED30003995-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=100bp
MSRGQFRDLVLTGDRRRSSFSGFGIFPDVDNTFFFQLGRLSQVSEDKIRF
DDDAVDRLNYKYSSLLLLMSIGLLTIRQNVGKPIQCWIPQEFTQGWEEYT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: cellular component
TermDefinition
GO:0005921gap junction
GO:0005886plasma membrane
GO:0016020membrane
GO:0016021integral component of membrane
GO:0030054cell junction
Vocabulary: biological process
TermDefinition
GO:0006810transport
GO:0006811ion transport
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000990InnexinPFAMPF00876Innexincoord: 52..100
e-value: 3.9E-15
score: 56.0
IPR000990InnexinPANTHERPTHR11893INNEXINcoord: 47..100
IPR000990InnexinPROSITEPS51013PANNEXINcoord: 47..100
score: 8.884
NoneNo IPR availablePANTHERPTHR11893:SF34INNEXINcoord: 47..100