nuclear factor Y subunit B

Overview


Name	nuclear factor Y subunit B (ADG08186.1)
Smed ID	SMED30003873
Length (bp)	753

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of nuclear factor Y subunit B (SMED30003873) t-SNE clustered cells

Violin plots show distribution of expression levels for nuclear factor Y subunit B (SMED30003873) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of nuclear factor Y subunit B (SMED30003873) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for nuclear factor Y subunit B (SMED30003873) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30003873

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
testis	SMED30003873	SMESG000017262.1	HM100653	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
testis	SMED30003873	SMESG000017262.1	HM100653	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
testis	SMED30003873	SMESG000017262.1	KU366699	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
pharynx	SMED30003873	SMESG000017262.1	dd_Smed_v4_5828_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30003873	SMESG000017262.1	dd_Smed_v4_5828_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
reproductive organ	SMED30003873	SMESG000017262.1	Contig762	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30003873	SMESG000017262.1	Contig762	newmark_ests	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30003873	SMESG000028748.1	Contig762	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30003873	SMESG000028748.1	Contig762	newmark_ests	PMID:28434803 Rouhana et al., 2017
epidermis	SMED30003873	SMESG000017262.1	dd_Smed_v4_5828_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
testis	SMED30003873	SMESG000017262.1	HM100653	smed_ncbi_20200123	PMID:20844018 Wang et al., 2010
spermatogonium	SMED30003873	SMESG000017262.1	HM100653	smed_ncbi_20200123	PMID:20844018 Wang et al., 2010
spermatocyte	SMED30003873	SMESG000017262.1	HM100653	smed_ncbi_20200123	PMID:20844018 Wang et al., 2010
spermatid	SMED30003873	SMESG000017262.1	HM100653	smed_ncbi_20200123	PMID:20844018 Wang et al., 2010
testis primordium	SMED30003873	SMESG000017262.1	Contig282_SE3	GPL10652	PMID:20844018 Wang et al., 2010

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Human
Match: NFYB (nuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805])

HSP 1 Score: 136.346 bits (342), Expect = 4.283e-39
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Human
Match: NFYB (nuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805])

HSP 1 Score: 136.346 bits (342), Expect = 4.548e-39
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   45 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 152

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Human
Match: DR1 (down-regulator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:3017])

HSP 1 Score: 73.9442 bits (180), Expect = 1.363e-15
Identity = 34/86 (39.53%), Postives = 57/86 (66.28%), Query Frame = 1

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA EIC   ++KTI+ E ++QA  +LGF +Y+  ++  LQ
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92

[Close]

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA EIC   ++KTI+ E ++QA  +LGF +Y+  ++  LQ
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Celegans
Match: nfyb-1 (Nuclear transcription Factor Y, B (Beta) subunit [Source:UniProtKB/TrEMBL;Acc:A0A0M7RFF4])

HSP 1 Score: 127.102 bits (318), Expect = 4.289e-34
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 1

Query:  142 CLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
             L DQ+RFLPI NV +IMK  +   AK+AKDAK+C QEC SEFISF++SEAAEIC   KRKTI  +D+L A    GFDNY E ++ FLQ YR+A+K    I
Sbjct:   58 VLLDQERFLPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDLLTAMEATGFDNYAEPMRIFLQKYRQAHKITGPI 158

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Celegans
Match: nfyb-1 (Nuclear transcription Factor Y, B (Beta) subunit [Source:UniProtKB/TrEMBL;Acc:A0A0M7RFF4])

HSP 1 Score: 103.219 bits (256), Expect = 8.449e-26
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 1

Query:  193 MKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            MK  +   AK+AKDAK+C QEC SEFISF++SEAAEIC   KRKTI  +D+L A    GFDNY E ++ FLQ YR+A+K    I
Sbjct:    1 MKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDLLTAMEATGFDNYAEPMRIFLQKYRQAHKITGPI 84

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Celegans
Match: dro-1 (DR1 (One) transcription factor family [Source:UniProtKB/TrEMBL;Acc:O45550])

HSP 1 Score: 50.8322 bits (120), Expect = 1.011e-7
Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 1

Query:  166 LPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFD-NYVETLQNFL 405
            LP   +++I+K+ +P   +IA +++  +  C  EF+  ++ EA  I   D+RKTI  E + +A  NLGF  +Y+E   + L
Sbjct:   22 LPQKGINQIIKEVVP-EMRIANESRDMINACCVEFVKHIAREAQRIASQDQRKTIYHEHVQKALQNLGFTPDYLEAADSVL 101

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Fly
Match: Nf-YB (gene:FBgn0032816 transcript:FBtr0343854)

HSP 1 Score: 139.043 bits (349), Expect = 4.182e-41
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1

Query:  130 DGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANK 429
            DG   L++QDRFLPICN+ KIMK  +P + KIAKDA++C+QEC SEFISF+SSEA E    + RKT+NG+D+L AF+NLGFDNYVE L  +LQ YRE+NK
Sbjct:   31 DGGIMLREQDRFLPICNIIKIMKVPVPQNGKIAKDARECIQECVSEFISFISSEAIERSVAENRKTVNGDDLLVAFSNLGFDNYVEPLSIYLQKYRESNK 130

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Fly
Match: Nf-YB (gene:FBgn0032816 transcript:FBtr0081289)

HSP 1 Score: 139.043 bits (349), Expect = 4.182e-41
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1

Query:  130 DGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANK 429
            DG   L++QDRFLPICN+ KIMK  +P + KIAKDA++C+QEC SEFISF+SSEA E    + RKT+NG+D+L AF+NLGFDNYVE L  +LQ YRE+NK
Sbjct:   31 DGGIMLREQDRFLPICNIIKIMKVPVPQNGKIAKDARECIQECVSEFISFISSEAIERSVAENRKTVNGDDLLVAFSNLGFDNYVEPLSIYLQKYRESNK 130

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Fly
Match: NC2beta (gene:FBgn0028926 transcript:FBtr0080695)

HSP 1 Score: 67.3958 bits (163), Expect = 1.697e-13
Identity = 32/91 (35.16%), Postives = 57/91 (62.64%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYRE 420
            +D +  LP  +++KI+K+ +P + ++A ++++ +  C SEFI  +SSEA E+C    +KTIN E +L+A   LGF +Y +  +  L   +E
Sbjct:   14 EDDELTLPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKE 103

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Fly
Match: Chrac-14 (gene:FBgn0043002 transcript:FBtr0100268)

HSP 1 Score: 56.225 bits (134), Expect = 6.119e-10
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1

Query:  154 QDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYR 417
            +D  LP   + +++K+ LP SA ++K+A+  +   AS F  FV+S +  +      KTI  +DILQ    L F+++V +L   L+ YR
Sbjct:    6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYR 93

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Zebrafish
Match: nfybb (nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25])

HSP 1 Score: 138.658 bits (348), Expect = 5.420e-40
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1

Query:  130 DGN---DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            DGN   D L++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YVE L+ +LQ +REA K E  I
Sbjct:   64 DGNGSKDNLREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 171

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Zebrafish
Match: nfybb (nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25])

HSP 1 Score: 137.887 bits (346), Expect = 6.033e-40
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1

Query:  130 DGN---DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            DGN   D L++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YVE L+ +LQ +REA K E  I
Sbjct:   43 DGNGSKDNLREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 150

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Zebrafish
Match: nfybb (nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25])

HSP 1 Score: 138.658 bits (348), Expect = 6.103e-40
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1

Query:  130 DGN---DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            DGN   D L++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YVE L+ +LQ +REA K E  I
Sbjct:   38 DGNGSKDNLREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 145

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Zebrafish
Match: nfyba (nuclear transcription factor Y, beta a [Source:ZFIN;Acc:ZDB-GENE-050417-13])

HSP 1 Score: 136.346 bits (342), Expect = 2.349e-39
Identity = 66/108 (61.11%), Postives = 82/108 (75.93%), Query Frame = 1

Query:  130 DGN---DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            DGN   D  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YVE L+ +LQ +REA K E  I
Sbjct:   42 DGNGSKDFFREQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 149

[Close]

Query:  130 DGN---DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            DGN   D  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YVE L+ +LQ +REA K E  I
Sbjct:   42 DGNGSKDFFREQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 149

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Xenopus
Match: cdk5r1 (cyclin-dependent kinase 5, regulatory subunit 1 (p35) [Source:Xenbase;Acc:XB-GENE-1032903])

HSP 1 Score: 135.191 bits (339), Expect = 9.860e-39
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 1

Query:  139 DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   49 ESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 150

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Xenopus
Match: cdk5r1 (cyclin-dependent kinase 5, regulatory subunit 1 (p35) [Source:Xenbase;Acc:XB-GENE-1032903])

HSP 1 Score: 136.346 bits (342), Expect = 1.743e-38
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 1

Query:  139 DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:  111 ESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 212

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Xenopus
Match: rad17 (RAD17 checkpoint clamp loader component [Source:Xenbase;Acc:XB-GENE-1002356])

HSP 1 Score: 74.3294 bits (181), Expect = 8.895e-16
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 1

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA EIC   ++KTI+ E ++QA  +LGF +Y+  +++ LQ
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKDVLQ 92

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Xenopus
Match: pole3 (polymerase (DNA directed), epsilon 3, accessory subunit [Source:NCBI gene;Acc:550018])

HSP 1 Score: 59.6918 bits (143), Expect = 1.075e-10
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANK 429
            + +D  LP   V++I+K+ LP    I+K+A+  +   AS F+ + +S A       KRKT+N  D+L A   + F  ++  L+  L+ YR+  K
Sbjct:    4 RPEDLNLPNAVVTRIIKEALPEGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNATDVLAAMEEMEFQRFLTPLKESLEVYRQDQK 97

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Mouse
Match: Nfyb (nuclear transcription factor-Y beta [Source:MGI Symbol;Acc:MGI:97317])

HSP 1 Score: 136.346 bits (342), Expect = 2.756e-39
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Mouse
Match: Nfyb (nuclear transcription factor-Y beta [Source:MGI Symbol;Acc:MGI:97317])

HSP 1 Score: 80.1073 bits (196), Expect = 7.481e-19
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1

Query:  145 LKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQ 309
             ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C 
Sbjct:   52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Mouse
Match: Dr1 (down-regulator of transcription 1 [Source:MGI Symbol;Acc:MGI:1100515])

HSP 1 Score: 73.9442 bits (180), Expect = 9.360e-16
Identity = 34/86 (39.53%), Postives = 57/86 (66.28%), Query Frame = 1

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA EIC   ++KTI+ E ++QA  +LGF +Y+  ++  LQ
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Mouse
Match: Pole3 (polymerase (DNA directed), epsilon 3 (p17 subunit) [Source:MGI Symbol;Acc:MGI:1933378])

HSP 1 Score: 60.077 bits (144), Expect = 6.143e-11
Identity = 29/94 (30.85%), Postives = 50/94 (53.19%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANK 429
            + +D  LP   +++I+K+ LP    I+K+A+  +   AS F+ + +S A       KRKT+N  D+L A   + F  ++  L+  L+ YR   K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRREQK 97

[Close]

BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
Match: sp|P25210|NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus OX=7757 GN=NFYB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.064e-40
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 1

Query:  139 DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D  ++QD +LPI NV++IMK  +P S KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ YRE+ K E  I
Sbjct:   51 DPYREQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGI 152

[Close]

BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.746e-39
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1

Query:  133 GNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYRE 420
            GN   ++QDRFLPI NVS+IMKK LP +AKI+KDAK+ VQEC SEFISF++ EA++ CQ +KRKTING+D+L A   LGF++YVE L+ +LQ YRE
Sbjct:   15 GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYRE 110

[Close]

BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
Match: sp|P63140|NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus OX=10116 GN=Nfyb PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.928e-38
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
Match: sp|P63139|NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus OX=10090 GN=Nfyb PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.928e-38
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
Match: sp|Q6RG77|NFYB_HORSE (Nuclear transcription factor Y subunit beta OS=Equus caballus OX=9796 GN=NFYB PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.035e-38
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1

Query:  124 DIDGN-DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D +G+ +  ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ +REA K E  I
Sbjct:   44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

BLAST of nuclear factor Y subunit B vs. TrEMBL
Match: A0A172G7H7 (Nuclear factor-Y subunit B OS=Schmidtea mediterranea OX=79327 GN=NF-YB PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 4.268e-133
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

Query:   64 MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMXXXXXXXXXXXXXXXXXXXXXFQRAVLNHLKKSSTDEDSFNMDEA 696
            MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA
Sbjct:    1 MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA 211

[Close]

BLAST of nuclear factor Y subunit B vs. TrEMBL
Match: E2FB14 (Nuclear factor Y subunit B (Fragment) OS=Schmidtea mediterranea OX=79327 GN=NF-YB PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 1.832e-107
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1

Query:  160 RFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMXXXXXXXXXXXXXXXXXXXXXFQRAVLNHLKKSSTDEDSFNMDEA 696
            RFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA
Sbjct:    1 RFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA 179

[Close]

BLAST of nuclear factor Y subunit B vs. TrEMBL
Match: A0A087W114 (Nuclear transcription factor Y subunit beta OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000204400 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.491e-44
Identity = 73/115 (63.48%), Postives = 91/115 (79.13%), Query Frame = 1

Query:  106 ASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIID 450
            A Y A DI+    L++QDRFLPI NVSKIMK+ +P + K+AKDAK+CVQEC SEFISF++SEAAE CQN+KRKTINGED+L A   LGF+NYVE L+ FL  YR+A K ++ II+
Sbjct:   32 ADYSAADIEQRSPLREQDRFLPIANVSKIMKRAIPSNGKVAKDAKECVQECVSEFISFITSEAAERCQNEKRKTINGEDLLWAMNALGFENYVEPLKTFLVKYRDAIKIDSSIIN 146

[Close]

BLAST of nuclear factor Y subunit B vs. TrEMBL
Match: A0A564Z2X0 (CBFD_NFYB_HMF domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS11698 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.493e-44
Identity = 72/113 (63.72%), Postives = 90/113 (79.65%), Query Frame = 1

Query:  112 YKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIID 450
            Y   D++    L++QDRFLPI NVSKIMKK +P   K+AKDAK+CVQEC SEFISF++SEAAE CQN+KRKTINGED+L A +NLGFDNYV+ L+ FL  YR+A K ++ II+
Sbjct:   34 YSTGDMEQRSPLREQDRFLPIANVSKIMKKAIPPQGKVAKDAKECVQECVSEFISFITSEAAERCQNEKRKTINGEDLLWAMSNLGFDNYVDPLKTFLLKYRDAIKIDSSIIN 146

[Close]

BLAST of nuclear factor Y subunit B vs. TrEMBL
Match: A0A068WQE2 (Nuclear transcription factor Y subunit beta OS=Echinococcus granulosus OX=6210 GN=EgrG_000204400 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.630e-44
Identity = 73/115 (63.48%), Postives = 91/115 (79.13%), Query Frame = 1

Query:  106 ASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIID 450
            A Y A DI+    L++QDRFLPI NVSKIMK+ +P + K+AKDAK+CVQEC SEFISF++SEAAE CQN+KRKTINGED+L A   LGF+NYVE L+ FL  YR+A K ++ II+
Sbjct:   32 ADYSAADIEQRSPLREQDRFLPIANVSKIMKRAIPSNGKVAKDAKECVQECVSEFISFITSEAAERCQNEKRKTINGEDLLWAMNALGFENYVEPLKTFLVKYRDAIKIDSSIIN 146

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Cavefish
Match: nfyba (nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:103021655])

HSP 1 Score: 139.813 bits (351), Expect = 9.790e-41
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1

Query:  130 DGNDC---LKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            DGN C   L++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YVE L+ +LQ +REA K E  +
Sbjct:   43 DGNGCKDNLREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGV 150

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Cavefish
Match: dr1 (down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797])

HSP 1 Score: 71.633 bits (174), Expect = 5.754e-15
Identity = 33/86 (38.37%), Postives = 57/86 (66.28%), Query Frame = 1

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA EIC   ++KTI+ E ++ A  +LGF +Y+  +++ LQ
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVINALESLGFGSYIAEVKDVLQ 92

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Cavefish
Match: pole3 (DNA polymerase epsilon 3, accessory subunit [Source:NCBI gene;Acc:103024896])

HSP 1 Score: 59.6918 bits (143), Expect = 6.922e-11
Identity = 26/94 (27.66%), Postives = 55/94 (58.51%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANK 429
            + +D  LP   +++I+K+ LP    ++K+A++ + + AS F+ + +S A       KRKT+N  D++ A   + F+ ++  L++ L+ Y++  K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNVSKEARRAISQAASVFVLYATSCANSFAMKAKRKTLNAGDVMSAMEEMEFERFLPPLRDALEAYKKGQK 97

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Sea Lamprey
Match: nfybb (Nuclear transcription factor Y subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P25210])

HSP 1 Score: 141.354 bits (355), Expect = 4.700e-42
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 1

Query:  139 DCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            D  ++QD +LPI NV++IMK  +P S KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD+YVE L+ +LQ YRE+ K E  I
Sbjct:   51 DPYREQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGI 152

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005397.1 (pep scaffold:Pmarinus_7.0:GL480146:24969:27649:-1 gene:ENSPMAG00000004898.1 transcript:ENSPMAT00000005397.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-14
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 1

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA +IC   ++KTI+ E +++A  +LGF  Y+  ++  LQ
Sbjct:    8 DDDLTIPRAAINKLIKELLP-NVRVANDARELVVSCCTEFIHLISSEANDICNKSEKKTISPEHVIKALESLGFGAYIGEVKAVLQ 92

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Yeast
Match: HAP3 (Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding [Source:SGD;Acc:S000000117])

HSP 1 Score: 127.487 bits (319), Expect = 1.158e-37
Identity = 57/101 (56.44%), Postives = 78/101 (77.23%), Query Frame = 1

Query:  145 LKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDII 447
            L++QDR+LPI NV+++MK  LP SAK++KDAK+C+QEC SE ISFV+SEA++ C  DKRKTINGEDIL +   LGF+NY E L+ +L  YR+    +N ++
Sbjct:   35 LREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQLM 135

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Yeast
Match: NCB2 (Subunit of a heterodimeric NC2 transcription regulator complex; complex binds to TBP and can repress transcription by preventing preinitiation complex assembly or stimulate activated transcription; homologous to human NC2beta; complex also includes Bur6p [Source:SGD;Acc:S000002805])

HSP 1 Score: 50.0618 bits (118), Expect = 1.991e-8
Identity = 25/83 (30.12%), Postives = 49/83 (59.04%), Query Frame = 1

Query:  181 VSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANK 429
            +S+I+ +DL F+    KDA++ +     EFI  +SS A+E+  N+ +KTI  E +++A   L ++ ++  L+  L  ++ + K
Sbjct:   19 ISEILDQDLMFT----KDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQK 97

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Nematostella
Match: EDO46868 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RNJ1])

HSP 1 Score: 136.346 bits (342), Expect = 4.595e-41
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1

Query:  154 QDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREA 423
            QDRFLPI NV++IMKK +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A   LGFDNYVE L+ +LQ YRE 
Sbjct:    4 QDRFLPIANVARIMKKSIPKTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMQTLGFDNYVEPLKLYLQKYREV 93

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Nematostella
Match: EDO43839 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXF9])

HSP 1 Score: 67.781 bits (164), Expect = 1.033e-13
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 1

Query:  136 NDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFL 405
             + L D D  LP   V+K++K+ +P + +++ DA++ +  C +EFI  +SSEA ++C    +KTI+ + IL A   LGF +Y+E +++ L
Sbjct:    4 REALADDDVTLPRAAVNKMIKEMIP-NMRVSNDARELILNCCTEFIHLISSEANDVCNRQMKKTISPDHILLALEGLGFQHYIEDVKSVL 92

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Medaka
Match: nfyba (nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:101165365])

HSP 1 Score: 132.494 bits (332), Expect = 6.671e-38
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YV+ L+ +LQ +REA K E  I
Sbjct:   51 REQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVDPLKLYLQKFREAMKGEKGI 149

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Medaka
Match: nfyba (nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:101165365])

HSP 1 Score: 131.724 bits (330), Expect = 6.436e-37
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            ++QD +LPI NV++IMK  +P + KIAKDAK+CVQEC SEFISF++SEA+E C  +KRKTINGEDIL A + LGFD YV+ L+ +LQ +REA K E  I
Sbjct:   51 REQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVDPLKLYLQKFREAMKGEKGI 149

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Medaka
Match: dr1 (down-regulator of transcription 1 [Source:NCBI gene;Acc:101168111])

HSP 1 Score: 64.6994 bits (156), Expect = 1.778e-12
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 1

Query:  151 DQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQ 408
            D D  +P   ++K++K+ LP + ++A DA++ V  C +EFI  +SSEA EIC    +KTI+ E ++    +LGF +Y+  +++ LQ
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSDKKTISPEHVIN-LESLGFGSYITEVKDVLQ 91

[Close]

BLAST of nuclear factor Y subunit B vs. Ensembl Medaka
Match: ENSORLT00000000708.2 (DNA polymerase epsilon 3, accessory subunit [Source:NCBI gene;Acc:101172142])

HSP 1 Score: 62.3882 bits (150), Expect = 6.113e-12
Identity = 29/99 (29.29%), Postives = 58/99 (58.59%), Query Frame = 1

Query:  148 KDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDI 444
            K +D  LP   +++I+K+ LP    ++K+A++ + + AS F+ + +S A       KRKT+N  D+L A   + F+ ++E L+  L+ Y++  K + ++
Sbjct:    4 KPEDLNLPNAVITRIIKEALPDGVNVSKEARRAISQAASVFVLYATSCANNFALKAKRKTLNAADVLAAMEEMEFERFLEPLRAALEVYKKGQKGKKEV 102

[Close]

BLAST of nuclear factor Y subunit B vs. Planmine SMEST
Match: SMESG000017262.1 (SMESG000017262.1)

HSP 1 Score: 383.259 bits (983), Expect = 1.187e-136
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

Query:   64 MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMXXXXXXXXXXXXXXXXXXXXXFQRAVLNHLKKSSTDEDSFNMDEA 696
            MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA
Sbjct:    1 MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA 211

[Close]

BLAST of nuclear factor Y subunit B vs. Planmine SMEST
Match: SMESG000017262.1 (SMESG000017262.1)

HSP 1 Score: 375.555 bits (963), Expect = 1.146e-133
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1

Query:   76 MNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMXXXXXXXXXXXXXXXXXXXXXFQRAVLNHLKKSSTDEDSFNMDEA 696
            MNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA
Sbjct:    1 MNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNSSSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSSTDEDSFNMDEA 207

[Close]

BLAST of nuclear factor Y subunit B vs. Planmine SMEST
Match: SMESG000040141.1 (SMESG000040141.1)

HSP 1 Score: 144.05 bits (362), Expect = 2.909e-42
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 1

Query:  145 LKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIID 450
            L++QDRFLPI NVSKIMKK +P + KI+K+AK+ VQEC SE+ISF++SEAAE CQ +KRKTINGED+L A ANLGF+  VE L+ FL  YREANK ++ I+D
Sbjct:   42 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMD 143

The following BLAST results are available for this feature:

BLAST of nuclear factor Y subunit B vs. Ensembl Human
BLAST of nuclear factor Y subunit B vs. Ensembl Celegans
BLAST of nuclear factor Y subunit B vs. Ensembl Fly
BLAST of nuclear factor Y subunit B vs. Ensembl Zebrafish
BLAST of nuclear factor Y subunit B vs. Ensembl Xenopus
BLAST of nuclear factor Y subunit B vs. Ensembl Mouse
BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
BLAST of nuclear factor Y subunit B vs. TrEMBL
BLAST of nuclear factor Y subunit B vs. Ensembl Cavefish
BLAST of nuclear factor Y subunit B vs. Ensembl Sea Lamprey
BLAST of nuclear factor Y subunit B vs. Ensembl Yeast
BLAST of nuclear factor Y subunit B vs. Ensembl Nematostella
BLAST of nuclear factor Y subunit B vs. Ensembl Medaka
BLAST of nuclear factor Y subunit B vs. Planmine SMEST

BLAST of nuclear factor Y subunit B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
NFYB	4.283e-39	59.26	nuclear transcription factor Y subunit beta [Sourc...	[more]
NFYB	4.283e-39	59.26	nuclear transcription factor Y subunit beta [Sourc...	[more]
NFYB	4.548e-39	59.26	nuclear transcription factor Y subunit beta [Sourc...	[more]
DR1	1.363e-15	39.53	down-regulator of transcription 1 [Source:HGNC Sym...	[more]
DR1	1.363e-15	39.53	down-regulator of transcription 1 [Source:HGNC Sym...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
nfyb-1	4.289e-34	58.42	Nuclear transcription Factor Y, B (Beta) subunit ...	[more]
nfyb-1	8.449e-26	57.14	Nuclear transcription Factor Y, B (Beta) subunit ...	[more]
dro-1	1.011e-7	33.33	DR1 (One) transcription factor family [Source:Uni...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Nf-YB	4.182e-41	64.00	gene:FBgn0032816 transcript:FBtr0343854	[more]
Nf-YB	4.182e-41	64.00	gene:FBgn0032816 transcript:FBtr0081289	[more]
NC2beta	1.697e-13	35.16	gene:FBgn0028926 transcript:FBtr0080695	[more]
Chrac-14	6.119e-10	34.09	gene:FBgn0043002 transcript:FBtr0100268	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nfybb	5.420e-40	62.04	nuclear transcription factor Y, beta b [Source:ZFI...	[more]
nfybb	6.033e-40	62.04	nuclear transcription factor Y, beta b [Source:ZFI...	[more]
nfybb	6.103e-40	62.04	nuclear transcription factor Y, beta b [Source:ZFI...	[more]
nfyba	2.349e-39	61.11	nuclear transcription factor Y, beta a [Source:ZFI...	[more]
nfyba	2.349e-39	61.11	nuclear transcription factor Y, beta a [Source:ZFI...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
cdk5r1	9.860e-39	60.78	cyclin-dependent kinase 5, regulatory subunit 1 (p...	[more]
cdk5r1	1.743e-38	60.78	cyclin-dependent kinase 5, regulatory subunit 1 (p...	[more]
rad17	8.895e-16	39.53	RAD17 checkpoint clamp loader component [Source:Xe...	[more]
pole3	1.075e-10	31.91	polymerase (DNA directed), epsilon 3, accessory su...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Nfyb	2.756e-39	59.26	nuclear transcription factor-Y beta [Source:MGI Sy...	[more]
Nfyb	7.481e-19	61.82	nuclear transcription factor-Y beta [Source:MGI Sy...	[more]
Dr1	9.360e-16	39.53	down-regulator of transcription 1 [Source:MGI Symb...	[more]
Pole3	6.143e-11	30.85	polymerase (DNA directed), epsilon 3 (p17 subunit)...	[more]

BLAST of nuclear factor Y subunit B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P25210\|NFYB_PETMA	2.064e-40	62.75	Nuclear transcription factor Y subunit beta OS=Pet...	[more]
sp\|O23310\|NFYB3_ARATH	3.746e-39	63.54	Nuclear transcription factor Y subunit B-3 OS=Arab...	[more]
sp\|P63140\|NFYB_RAT	1.928e-38	59.26	Nuclear transcription factor Y subunit beta OS=Rat...	[more]
sp\|P63139\|NFYB_MOUSE	1.928e-38	59.26	Nuclear transcription factor Y subunit beta OS=Mus...	[more]
sp\|Q6RG77\|NFYB_HORSE	2.035e-38	59.26	Nuclear transcription factor Y subunit beta OS=Equ...	[more]

BLAST of nuclear factor Y subunit B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A172G7H7	4.268e-133	100.00	Nuclear factor-Y subunit B OS=Schmidtea mediterran...	[more]
E2FB14	1.832e-107	100.00	Nuclear factor Y subunit B (Fragment) OS=Schmidtea...	[more]
A0A087W114	8.491e-44	63.48	Nuclear transcription factor Y subunit beta OS=Ech...	[more]
A0A564Z2X0	8.493e-44	63.72	CBFD_NFYB_HMF domain-containing protein OS=Hymenol...	[more]
A0A068WQE2	8.630e-44	63.48	Nuclear transcription factor Y subunit beta OS=Ech...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
nfyba	9.790e-41	61.11	nuclear transcription factor Y subunit beta [Sourc...	[more]
dr1	5.754e-15	38.37	down-regulator of transcription 1 [Source:ZFIN;Acc...	[more]
pole3	6.922e-11	27.66	DNA polymerase epsilon 3, accessory subunit [Sourc...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
nfybb	4.700e-42	62.75	Nuclear transcription factor Y subunit beta [Sour...	[more]
ENSPMAT00000005397.1	1.621e-14	37.21	pep scaffold:Pmarinus_7.0:GL480146:24969:27649:-1 ...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
HAP3	1.158e-37	56.44	Subunit of the Hap2p/3p/4p/5p CCAAT-binding comple...	[more]
NCB2	1.991e-8	30.12	Subunit of a heterodimeric NC2 transcription regul...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO46868	4.595e-41	70.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43839	1.033e-13	35.56	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of nuclear factor Y subunit B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
nfyba	6.671e-38	61.62	nuclear transcription factor Y subunit beta [Sourc...	[more]
nfyba	6.436e-37	61.62	nuclear transcription factor Y subunit beta [Sourc...	[more]
dr1	1.778e-12	37.21	down-regulator of transcription 1 [Source:NCBI gen...	[more]
ENSORLT00000000708.2	6.113e-12	29.29	DNA polymerase epsilon 3, accessory subunit [Sourc...	[more]

BLAST of nuclear factor Y subunit B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000017262.1	1.187e-136	100.00	SMESG000017262.1	[more]
SMESG000017262.1	1.146e-133	100.00	SMESG000017262.1	[more]
SMESG000040141.1	2.909e-42	65.69	SMESG000040141.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30003873
GenBank	ADG08186.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30003873 ID=SMED30003873|Name=nuclear factor Y subunit B|organism=Schmidtea mediterranea sexual|type=transcript|length=753bp
ATTAATTTGATTTTATTTAAATTTGAAATATTGAATTTAATTAACGATCG
TTAATTTAAAAAAATGGACGATAACATGAATACTTTTCTTGAGCCTCTTT
GTTCAGCTTCATACAAAGCTTGCGATATAGATGGAAATGATTGTTTGAAA
GATCAGGACAGATTCCTGCCGATTTGCAACGTTTCGAAAATAATGAAAAA
GGATCTTCCGTTCAGTGCAAAGATAGCCAAGGATGCTAAACAGTGCGTTC
AAGAATGCGCATCGGAATTCATCAGCTTTGTGAGCAGCGAAGCAGCAGAA
ATCTGTCAAAATGACAAAAGGAAAACAATTAATGGAGAAGATATTTTGCA
AGCTTTTGCCAATTTGGGATTTGATAATTACGTGGAGACCTTGCAGAACT
TTTTGCAAACTTATAGAGAGGCAAATAAATTTGAAAATGATATCATTGAC
CTGGGCAACAATAATAATGCGCAAGGCAGGCCTTGGTCAATGGCGCCAGT
AAACTCAAACTCGTCATCAGAACTGAATATCAAACTGAACATGCCTCATC
TGCTTTCCATGCTCCCGTTGACCGACCTCACCTCGAGCAATCTGAATTTG
GAAAATCTTCTTCGTGATTCAGATTTCCAAAGAGCAGTTTTGAATCACTT
GAAGAAATCATCAACCGATGAAGACTCCTTTAATATGGATGAAGCATTAT
AATTATTATTTTTATTGTTCAAATTATATATTTTTTGGATTCTTAAAAAA
AAA

protein sequence of SMED30003873-orf-1

>SMED30003873-orf-1 ID=SMED30003873-orf-1|Name=SMED30003873-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=213bp
MDDNMNTFLEPLCSASYKACDIDGNDCLKDQDRFLPICNVSKIMKKDLPF
SAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFAN
LGFDNYVETLQNFLQTYREANKFENDIIDLGNNNNAQGRPWSMAPVNSNS
SSELNIKLNMPHLLSMLPLTDLTSSNLNLENLLRDSDFQRAVLNHLKKSS
TDEDSFNMDEAL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000034	epidermis
PLANA:0000208	testis
PLANA:0000220	spermatogonium
PLANA:0000221	spermatocyte
PLANA:0000222	spermatid
PLANA:0002089	reproductive organ
PLANA:0003304	testis primordium

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **molecular function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 100..118 score: 31.58 coord: 81..99 score: 41.51 coord: 62..80 score: 48.56
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 28..137
None	No IPR available	PANTHER	PTHR11064:SF9	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA	coord: 28..137
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 24..152 e-value: 1.7E-40 score: 140.1
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 31..128
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 34..97 e-value: 4.4E-26 score: 90.9