Chromo domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30003855 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 18
Homology
BLAST of Chromo domain-containing protein vs. UniProt/SwissProt
Match: sp|P34457|YMD3_CAEEL (Putative uncharacterized transposon-derived protein F54H12.3 OS=Caenorhabditis elegans OX=6239 GN=F54H12.3 PE=5 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.298e-15 Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 3 Query: 18 INHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQEL 461 +N +S S+ K A VER NRTL+ RL KY + N+ +++VL +++ NNS +RG+ G +PVD+ + + +V I K++VGDHVRI+ F K ++ W+ EV+ N+ +P + S+ ++I GK Q + Sbjct: 78 VNLFSPKSEIKCAIVERANRTLKTRLAKYMTQKYNRRYVDVLQQVVNGINNSVNRGI-GKKPVDVERGDFSTPMPVDSVKI---KFRVGDHVRIAA-KRGQFDKGYEQGWTTEVYM---SNSTTTPTAHA--PSEESIINGKSIPQPM 215
BLAST of Chromo domain-containing protein vs. TrEMBL
Match: A0A3C1P802 (Uncharacterized protein OS=Planktothrix sp. UBA8402 OX=2055759 GN=DCQ63_02380 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 2.351e-53 Identity = 102/212 (48.11%), Postives = 142/212 (66.98%), Query Frame = 3 Query: 15 KINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVD------------ISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKD-SDNNLIQGKFYEQELQVI--SKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNP--TWISAKDLIK 599 KI HY+V SQ+KAA VERFNRTLR+RL ++F HQ NK W+ VLPK++ +YN++SHR L G PVD + + +VR + + Y VG VRIS+IS SPF KNFD NWS+E+F+I ++ PVMYV+KD + + LI+GKFY +ELQ + S P V+RI+KI++TK G+ KQY+VKW+G+ + +WI+ L+K Sbjct: 159 KIIHYTVQSQFKAAVVERFNRTLRERLNRFFTHQRNKKWLLVLPKLIHAYNHASHRSLKGKSPVDLYVNDPNNLNDWLHQQQKDTNVRKRRQTL----YSVGSLVRISRISTSPFRKNFDQNWSEEIFRIASVDKASKPVMYVLKDVATDELIEGKFYHEELQDVGDSLPNVYRIEKIIRTKGKGEHKQYFVKWYGFNDSRNSWITKDQLVK 366
BLAST of Chromo domain-containing protein vs. TrEMBL
Match: A0A4Y2T0D2 (Uncharacterized transposon-derived protein F54H12.3 OS=Araneus ventricosus OX=182803 GN=F54H12.3_15 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 8.610e-38 Identity = 90/211 (42.65%), Postives = 134/211 (63.51%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAI-TKPKY--KVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKP---TVFRIQKILKTKMVGKDKQYYVKWHGYQNP--TWISAKDLIKLNFY 611 L + KINHYS HS++KA+ VERFNRTL+++L + F H+G+ +I+VL K++ SYNNS HR G P D++S L + K A T+ +Y VGD VRISK + F + + NWSDEVF I K +P Y++KD ++G+FY ELQ + K T++RI+K+L+TK G++K+Y+VKW G+ N +W+ K + +L + Sbjct: 36 LKKNKINHYSSHSEHKASVVERFNRTLKNKLFRIFTHRGSYKYIDVLDKVIKSYNNSIHR-TTGFAPNDVTS-NLEPLIFEKVYAYKTEIRYTFNVGDQVRISK-AKKTFRRGYLPNWSDEVFTIDK-RFATNPPTYILKDLKGETLKGRFYANELQKVRKSSSDTLWRIEKVLRTKGKGENKEYFVKWRGFDNRFNSWVKKKWMSRLQIF 242
BLAST of Chromo domain-containing protein vs. TrEMBL
Match: A0A4Y2HQ68 (Uncharacterized transposon-derived protein F54H12.3 OS=Araneus ventricosus OX=182803 GN=F54H12.3_86 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.274e-37 Identity = 89/211 (42.18%), Postives = 133/211 (63.03%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAI-TKPKY--KVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKP---TVFRIQKILKTKMVGKDKQYYVKWHGYQNP--TWISAKDLIKLNFY 611 L + KINHYS HS++KA+ VERFNRTL+++L + F H+G+ +I+VL K++ SYNNS HR G P D++S L + K T+ +Y VGD VRISK + F + + NWSDEVF I K +P Y++KD ++G+FY ELQ + K T++RI+K+L+TK G++K+Y+VKW G+ N +W+ K + +L + Sbjct: 36 LKKNKINHYSSHSEHKASVVERFNRTLKNKLFRIFTHRGSYKYIDVLDKVIKSYNNSIHR-TTGFAPNDVTS-NLEPLIFEKVYGYKTEIRYTFNVGDQVRISK-AKKTFRRGYLPNWSDEVFTIDK-RFATNPPTYILKDLKGETLKGRFYANELQRVRKSSSDTLWRIEKVLRTKGKGENKEYFVKWRGFDNRFNSWVKKKWMSRLQIF 242
BLAST of Chromo domain-containing protein vs. TrEMBL
Match: A0A4Y2UGM2 (Uncharacterized transposon-derived protein F54H12.3 OS=Araneus ventricosus OX=182803 GN=F54H12.3_50 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.825e-37 Identity = 89/211 (42.18%), Postives = 133/211 (63.03%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAI-TKPKY--KVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKP---TVFRIQKILKTKMVGKDKQYYVKWHGYQNP--TWISAKDLIKLNFY 611 L + KINHYS HS++KA+ VERFNRTL+++L + F H+G+ +I+VL K++ SYNNS HR G P D++S L + K T+ +Y VGD VRISK + F + + NWSDEVF I K +P Y++KD ++G+FY ELQ + K T++RI+K+L+TK G++K+Y+VKW G+ N +W+ K + +L + Sbjct: 36 LKKNKINHYSSHSEHKASVVERFNRTLKNKLFRIFTHRGSYKYIDVLDKVIKSYNNSIHR-TTGFAPNDVTS-NLEPLIFEKVYGYKTEIRYTFNVGDQVRISK-AKKTFRRGYLPNWSDEVFTIDK-RFATNPPTYILKDLKGETLKGRFYANELQKVRKSSSDTLWRIEKVLRTKGKGENKEYFVKWRGFDNRFNSWVKKKWMSRLQIF 242
BLAST of Chromo domain-containing protein vs. TrEMBL
Match: A0A4Y2BNX6 (Uncharacterized transposon-derived protein F54H12.3 OS=Araneus ventricosus OX=182803 GN=F54H12.3_18 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 7.439e-37 Identity = 88/211 (41.71%), Postives = 133/211 (63.03%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAI-TKPKY--KVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKP---TVFRIQKILKTKMVGKDKQYYVKWHGYQNP--TWISAKDLIKLNFY 611 L + KINHYS HS++KA+ VERFNRTL+++L + F H+G+ +I+VL K++ SYNNS HR G P D++S L + K T+ +Y VGD VRISK + F + + NWSDE+F I K +P Y++KD ++G+FY ELQ + K T++RI+K+L+TK G++K+Y+VKW G+ N +W+ K + +L + Sbjct: 31 LKKNKINHYSSHSEHKASVVERFNRTLKNKLFRIFTHRGSYKYIDVLDKVIKSYNNSIHR-TTGFAPNDVTS-NLEPLIFEKVYGYKTEIRYTFNVGDQVRISK-AKKTFRRGYLPNWSDEMFTIDK-RFATNPPTYILKDLKGETLKGRFYANELQKVRKSSSDTLWRIEKVLRTKGKGENKEYFVKWRGFDNRFNSWVKKKWMSRLQIF 237
BLAST of Chromo domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000055500.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001032.1:12601:13692:-1 gene:ENSAMXG00000041341.1 transcript:ENSAMXT00000055500.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 115.931 bits (289), Expect = 4.223e-28 Identity = 73/206 (35.44%), Postives = 123/206 (59.71%), Query Frame = 3 Query: 18 INHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISS-------KTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQ--VISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNP--TWISAKDLIKL 602 I H++ + KA+ ERFNRTLR+++ KYF + +I+V+ +++ SYN++ H + ++PV++ KTL S+ V + K+K+GD VRIS++ A F K ++ N++DE F I++ + PV Y + D+D I G FYE ELQ ++ K F+I+KI++ +M + K VKW G+ + +WI AKD++ + Sbjct: 159 IVHFATGTGQKASVCERFNRTLRNKMWKYFTAVNTRKYIDVVQELVHSYNHNYHSSIK-MKPVEVDETNSFKVFKTLYGLFPSR-VKKLRFKFKIGDVVRISRLKAH-FEKGYEQNYTDEYFTISERIPRDPPV-YKLHDADGEEITGTFYEPELQKIIVGKDKSFKIEKIIQERMQNRKKMCLVKWVGWPDKFNSWIPAKDIVNI 360
BLAST of Chromo domain-containing protein vs. Planmine SMEST
Match: SMESG000029226.1 (SMESG000029226.1) HSP 1 Score: 444.506 bits (1142), Expect = 1.635e-139 Identity = 222/263 (84.41%), Postives = 229/263 (87.07%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNPTWISAKDLIKLNFYMILPINSCPNIHPDNQESKFMVDLQNPIYLNGNWEVALLDFTFVYNLFSFYSKSKIEYKK 791 LDR+KINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKT V+SK V ITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILK KMVGKDKQYYVKWHGYQ P+ NSCP IHP+NQ SKFMV+LQNP+YL+GNWEVAL DFTFVYN F FYS KI YKK Sbjct: 142 LDRLKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKT---RVQSKKVTITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKIKMVGKDKQYYVKWHGYQKPS------------------NSCPLIHPENQASKFMVNLQNPMYLHGNWEVALQDFTFVYNTFPFYSHCKIGYKK 383 HSP 2 Score: 110.538 bits (275), Expect = 9.867e-26 Identity = 63/130 (48.46%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 1109 YKHLIQNCGFIFKEFELINDKYFKFLLNTDINEITFDKNLIKTLGLPIQRYLQDAKNNEGSSKPKIIKFHRQLFIYINLIDPIIVGDSNVPLLKSVWIEKHEHDKVVQIQIENPMHFHVSTSCINNIEIN 1498 +K++ NC IFK E + D +K Q Y A G KPK+IK HRQ+FIY N+IDPIIVGDS VPLLKSVW++KH+ D+VV I I+N M+ VSTSCINNIEIN Sbjct: 503 HKYISLNCLHIFKTIEFLKDGIYK------------------------QTYRASA---FGVRKPKLIKLHRQMFIYTNIIDPIIVGDSLVPLLKSVWVDKHDQDEVVNINIDNLMYLPVSTSCINNIEIN 605 HSP 3 Score: 25.7942 bits (55), Expect = 9.867e-26 Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 1 Query: 1015 IEAVRLKILYPFNKPYTFTFKEDLYISKIDELQTFNS 1125 IE +++ + Y TFTF +LYI ++EL + S Sbjct: 471 IENIKISVSYINEVEDTFTFTNELYIETLEELHKYIS 507
BLAST of Chromo domain-containing protein vs. Planmine SMEST
Match: SMESG000029226.1 (SMESG000029226.1) HSP 1 Score: 444.121 bits (1141), Expect = 2.070e-139 Identity = 222/263 (84.41%), Postives = 229/263 (87.07%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNPTWISAKDLIKLNFYMILPINSCPNIHPDNQESKFMVDLQNPIYLNGNWEVALLDFTFVYNLFSFYSKSKIEYKK 791 LDR+KINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKT V+SK V ITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILK KMVGKDKQYYVKWHGYQ P+ NSCP IHP+NQ SKFMV+LQNP+YL+GNWEVAL DFTFVYN F FYS KI YKK Sbjct: 142 LDRLKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKT---RVQSKKVTITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKIKMVGKDKQYYVKWHGYQKPS------------------NSCPLIHPENQASKFMVNLQNPMYLHGNWEVALQDFTFVYNTFPFYSHCKIGYKK 383 HSP 2 Score: 110.538 bits (275), Expect = 8.931e-26 Identity = 63/130 (48.46%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 1109 YKHLIQNCGFIFKEFELINDKYFKFLLNTDINEITFDKNLIKTLGLPIQRYLQDAKNNEGSSKPKIIKFHRQLFIYINLIDPIIVGDSNVPLLKSVWIEKHEHDKVVQIQIENPMHFHVSTSCINNIEIN 1498 +K++ NC IFK E + D +K Q Y A G KPK+IK HRQ+FIY N+IDPIIVGDS VPLLKSVW++KH+ D+VV I I+N M+ VSTSCINNIEIN Sbjct: 503 HKYISLNCLHIFKTIEFLKDGIYK------------------------QTYRASA---FGVRKPKLIKLHRQMFIYTNIIDPIIVGDSLVPLLKSVWVDKHDQDEVVNINIDNLMYLPVSTSCINNIEIN 605 HSP 3 Score: 25.7942 bits (55), Expect = 8.931e-26 Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 1 Query: 1015 IEAVRLKILYPFNKPYTFTFKEDLYISKIDELQTFNS 1125 IE +++ + Y TFTF +LYI ++EL + S Sbjct: 471 IENIKISVSYINEVEDTFTFTNELYIETLEELHKYIS 507
BLAST of Chromo domain-containing protein vs. Planmine SMEST
Match: SMESG000029226.1 (SMESG000029226.1) HSP 1 Score: 443.736 bits (1140), Expect = 2.817e-139 Identity = 222/263 (84.41%), Postives = 229/263 (87.07%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNPTWISAKDLIKLNFYMILPINSCPNIHPDNQESKFMVDLQNPIYLNGNWEVALLDFTFVYNLFSFYSKSKIEYKK 791 LDR+KINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKT V+SK V ITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILK KMVGKDKQYYVKWHGYQ P+ NSCP IHP+NQ SKFMV+LQNP+YL+GNWEVAL DFTFVYN F FYS KI YKK Sbjct: 343 LDRLKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKT---RVQSKKVTITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKIKMVGKDKQYYVKWHGYQKPS------------------NSCPLIHPENQASKFMVNLQNPMYLHGNWEVALQDFTFVYNTFPFYSHCKIGYKK 584 HSP 2 Score: 110.538 bits (275), Expect = 9.694e-26 Identity = 63/130 (48.46%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 1109 YKHLIQNCGFIFKEFELINDKYFKFLLNTDINEITFDKNLIKTLGLPIQRYLQDAKNNEGSSKPKIIKFHRQLFIYINLIDPIIVGDSNVPLLKSVWIEKHEHDKVVQIQIENPMHFHVSTSCINNIEIN 1498 +K++ NC IFK E + D +K Q Y A G KPK+IK HRQ+FIY N+IDPIIVGDS VPLLKSVW++KH+ D+VV I I+N M+ VSTSCINNIEIN Sbjct: 704 HKYISLNCLHIFKTIEFLKDGIYK------------------------QTYRASA---FGVRKPKLIKLHRQMFIYTNIIDPIIVGDSLVPLLKSVWVDKHDQDEVVNINIDNLMYLPVSTSCINNIEIN 806 HSP 3 Score: 25.7942 bits (55), Expect = 9.694e-26 Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 1 Query: 1015 IEAVRLKILYPFNKPYTFTFKEDLYISKIDELQTFNS 1125 IE +++ + Y TFTF +LYI ++EL + S Sbjct: 672 IENIKISVSYINEVEDTFTFTNELYIETLEELHKYIS 708
BLAST of Chromo domain-containing protein vs. Planmine SMEST
Match: SMESG000079430.1 (SMESG000079430.1) HSP 1 Score: 381.333 bits (978), Expect = 7.255e-124 Identity = 187/198 (94.44%), Postives = 191/198 (96.46%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNPTWISAKDLI 596 LDR+KINHYSVHSQ KAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNN SHRGLNGL PVD SSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKF +QELQVISKPTVFRIQKILKTKMVGKDKQY VKWHGYQ P+WIS+KDLI Sbjct: 154 LDRLKINHYSVHSQCKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNLSHRGLNGLIPVDTSSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFNDQELQVISKPTVFRIQKILKTKMVGKDKQYCVKWHGYQKPSWISSKDLI 351 HSP 2 Score: 125.946 bits (315), Expect = 5.380e-31 Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = 2 Query: 1109 YKHLIQNCGFIFKEFELINDKYFKFLLNTDINEITFDKNLIKTLGLPIQRYLQDAKNNEGSSKPKIIKFHRQLFIYINLIDPIIVGDSNVPLLKSVWIEKHEHDKVVQIQIENPM 1453 +K++ NC IFK E + D KF LN +I EITFDK L TLGL Q Y A G KPKIIK HRQ+FIY N+IDPIIVGDS VPLLKSVW++KH+ D+VV I I+NP+ Sbjct: 446 HKYISFNCLHIFKTIEFVKDGICKFSLNNNICEITFDKYLANTLGLDKQTYRASA---FGVRKPKIIKLHRQMFIYTNIIDPIIVGDSLVPLLKSVWVDKHDQDEVVNINIDNPI 557 HSP 3 Score: 28.1054 bits (61), Expect = 5.380e-31 Identity = 14/37 (37.84%), Postives = 21/37 (56.76%), Query Frame = 1 Query: 1015 IEAVRLKILYPFNKPYTFTFKEDLYISKIDELQTFNS 1125 IE +++ + Y TFTF DLYI ++EL + S Sbjct: 414 IENIKISVSYINEVEETFTFTNDLYIETLEELHKYIS 450
BLAST of Chromo domain-containing protein vs. Planmine SMEST
Match: SMESG000053372.1 (SMESG000053372.1) HSP 1 Score: 397.127 bits (1019), Expect = 2.892e-123 Identity = 194/201 (96.52%), Postives = 198/201 (98.51%), Query Frame = 3 Query: 3 LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDHVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQNPTWISAKDLIKLN 605 LDR+KINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGD+VRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQ P+WIS+KDL LN Sbjct: 142 LDRLKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTLAKSVRSKTVAITKPKYKVGDYVRISKISASPFIKNFDSNWSDEVFQITKINTKQSPVMYVIKDSDNNLIQGKFYEQELQVISKPTVFRIQKILKTKMVGKDKQYYVKWHGYQKPSWISSKDLDGLN 342 HSP 2 Score: 153.295 bits (386), Expect = 2.537e-39 Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 2 Query: 1109 YKHLIQNCGFIFKEFELINDKYFKFLLNTDINEITFDKNLIKTLGLPIQRYLQDAKNNEGSSKPKIIKFHRQLFIYINLIDPIIVGDSNVPLLKSVWIEKHEHDKVVQIQIENPMHFHVSTSCINNIEIN 1498 +K++ NC IFK E + D KF LN +I EITFDKNL TLGL Q Y A G KPKIIK HRQ+FIY N+IDPIIVGDS VPLLKSVW++KH+ D+VV I I+NPM+ VSTSCINNIEIN Sbjct: 423 HKYISFNCLHIFKTIEFVKDGLCKFSLNNNICEITFDKNLANTLGLDKQTYRTSA---FGVRKPKIIKLHRQIFIYTNIIDPIIVGDSLVPLLKSVWVDKHDQDEVVNINIDNPMYLPVSTSCINNIEIN 549 The following BLAST results are available for this feature:
BLAST of Chromo domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Chromo domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Chromo domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Chromo domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Chromo domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Chromo domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30003855 ID=SMED30003855|Name=Chromo domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1498bpback to top protein sequence of SMED30003855-orf-1 >SMED30003855-orf-1 ID=SMED30003855-orf-1|Name=SMED30003855-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=132bp MNYKHLIQNCGFIFKEFELINDKYFKFLLNTDINEITFDKNLIKTLGLPIback to top protein sequence of SMED30003855-orf-2 >SMED30003855-orf-2 ID=SMED30003855-orf-2|Name=SMED30003855-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=267bp LDRIKINHYSVHSQYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKIback to top Annotated Terms
The following terms have been associated with this transcript:
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