KH domain-containing protein

Overview


Name	KH domain-containing protein
Smed ID	SMED30003741
Length (bp)	971

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of KH domain-containing protein (SMED30003741) t-SNE clustered cells

Violin plots show distribution of expression levels for KH domain-containing protein (SMED30003741) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of KH domain-containing protein (SMED30003741) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for KH domain-containing protein (SMED30003741) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30003741

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 8

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30003741	h1SMcG0011082	SmedASXL_006165	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30003741	h1SMcG0011082	SmedASXL_006165	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30003741	h1SMcG0011082	dd_Smed_v4_1393_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30003741	h1SMcG0011082	dd_Smed_v4_1393_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30003741	h1SMcG0011082	dd_Smed_v4_1393_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30003741	h1SMcG0011082	dd_Smed_v4_1393_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30003741	h1SMcG0011082	dd_Smed_v4_1393_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
X1 cell	SMED30003741	h1SMcG0011082	isotig08321	be_Smed_v2	PMID:22543868 Onal et al., 2012

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 85.5001 bits (210), Expect = 1.394e-19
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   18 YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 128

[Close]

BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS2 (KH RNA binding domain containing, signal transduction associated 2 [Source:HGNC Symbol;Acc:HGNC:18114])

HSP 1 Score: 87.4261 bits (215), Expect = 7.079e-19
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 3

Query:  204 SSLGASEIHRLRGGIAD-------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            S L A EI + +G           ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  ++LK +QE+T  KM+I G          E  ++     + H +++LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   25 SRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 85.8853 bits (211), Expect = 9.706e-19
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   17 YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 127

[Close]

BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 85.5001 bits (210), Expect = 3.099e-18
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   45 YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 155

[Close]

BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS1 (KH RNA binding domain containing, signal transduction associated 1 [Source:HGNC Symbol;Acc:HGNC:18116])

HSP 1 Score: 80.1073 bits (196), Expect = 4.731e-16
Identity = 44/133 (33.08%), Postives = 77/133 (57.89%), Query Frame = 3

Query:  219 SEIHRLRGGIA------DFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNL 569
            +EI +++ G +      +++DL  +K +K++ ++ IP  QYP  NFVGK+LGP  +T+K +QE+T  K+++ G          E  ++   P + H    LH+ I+  G P EAY  ++HA+ EV+K L  ++
Sbjct:  127 AEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDM 259

[Close]

BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 59.6918 bits (143), Expect = 6.633e-10
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 3

Query:  297 KIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG---IENPKQKNM----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            K+ +PA ++P  NFVG++LGP   T K ++++T  K+ +RG   + + K++ +    P ++H +E+LH+ I    T   A  KL  A+ EV+K L
Sbjct:   91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL 185

[Close]

BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 59.3066 bits (142), Expect = 1.141e-9
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 3

Query:  297 KIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG---IENPKQKNM----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            K+ +PA ++P  NFVG++LGP   T K ++++T  K+ +RG   + + K++ +    P ++H +E+LH+ I    T   A  KL  A+ EV+K L
Sbjct:   91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL 185

[Close]

BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 59.3066 bits (142), Expect = 1.194e-9
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 3

Query:  297 KIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG---IENPKQKNM----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            K+ +PA ++P  NFVG++LGP   T K ++++T  K+ +RG   + + K++ +    P ++H +E+LH+ I    T   A  KL  A+ EV+K L
Sbjct:  133 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL 227

[Close]

BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 59.3066 bits (142), Expect = 1.352e-9
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 3

Query:  297 KIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG---IENPKQKNM----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            K+ +PA ++P  NFVG++LGP   T K ++++T  K+ +RG   + + K++ +    P ++H +E+LH+ I    T   A  KL  A+ EV+K L
Sbjct:  163 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL 257

[Close]

BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: Y69A2AR.32 (pep chromosome:WBcel235:IV:2610408:2612430:1 gene:WBGene00022101.1 transcript:Y69A2AR.32a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y69A2AR.32)

HSP 1 Score: 54.6842 bits (130), Expect = 3.453e-8
Identity = 31/105 (29.52%), Postives = 55/105 (52.38%), Query Frame = 3

Query:  306 IPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG-----IENPKQ---KNMPVFDH------------TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLT 560
            +P ++YP  NFVG++LGP   T+K ++++T  ++ +RG       NP+    K+ P F               E LH+ I+   T + A  K++HA+  +Q+ L+
Sbjct:   77 VPVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKSTPSFSKPSLSIISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQRLLS 181

[Close]

BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-3 (gene:FBgn0022984 transcript:FBtr0339538)

HSP 1 Score: 79.7221 bits (195), Expect = 1.342e-16
Identity = 39/115 (33.91%), Postives = 69/115 (60.00%), Query Frame = 3

Query:  243 GIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTEK-LHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            G   + D+   K +K+  K+ +P  QYP  NF GK+LGP  ++L+ +QE+T  K+ I+G  + + +N          P + H +K L L++ ++ TPAE Y ++++A+AE++K L
Sbjct:   65 GKEFYADVYKQKPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYL 179

[Close]

BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-3 (gene:FBgn0022984 transcript:FBtr0307214)

HSP 1 Score: 79.7221 bits (195), Expect = 1.342e-16
Identity = 39/115 (33.91%), Postives = 69/115 (60.00%), Query Frame = 3

Query:  243 GIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTEK-LHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            G   + D+   K +K+  K+ +P  QYP  NF GK+LGP  ++L+ +QE+T  K+ I+G  + + +N          P + H +K L L++ ++ TPAE Y ++++A+AE++K L
Sbjct:   65 GKEFYADVYKQKPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYL 179

[Close]

BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-3 (gene:FBgn0022984 transcript:FBtr0290254)

HSP 1 Score: 79.7221 bits (195), Expect = 1.342e-16
Identity = 39/115 (33.91%), Postives = 69/115 (60.00%), Query Frame = 3

Query:  243 GIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTEK-LHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            G   + D+   K +K+  K+ +P  QYP  NF GK+LGP  ++L+ +QE+T  K+ I+G  + + +N          P + H +K L L++ ++ TPAE Y ++++A+AE++K L
Sbjct:   65 GKEFYADVYKQKPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYL 179

[Close]

BLAST of KH domain-containing protein vs. Ensembl Fly
Match: CG3927 (gene:FBgn0034739 transcript:FBtr0071853)

HSP 1 Score: 75.485 bits (184), Expect = 2.374e-15
Identity = 37/115 (32.17%), Postives = 69/115 (60.00%), Query Frame = 3

Query:  243 GIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTEK-LHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            G   F D+   K +K+  K+ +P +++P  NF GK+LGP  ++L+ +QE+T+ K+ I+G  + + +N          P + H  K L L++ ++  PAE Y ++++A+AE++K L
Sbjct:   66 GKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYL 180

[Close]

BLAST of KH domain-containing protein vs. Ensembl Fly
Match: CG4021 (gene:FBgn0034659 transcript:FBtr0071716)

HSP 1 Score: 75.8702 bits (185), Expect = 2.821e-15
Identity = 35/109 (32.11%), Postives = 68/109 (62.39%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM-------PVFDHTEK-LHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            + D+   K +K+  K+ +P +QYP  NF GK+LGP  ++L+ +QE+T  K+ ++G  + + +N        P + H +K L L++ ++  PAE + ++++A+AE++K L
Sbjct:   73 YADVYRQKPMKIIQKVFVPVNQYPKFNFAGKILGPKGNSLRRLQEETQCKIALKGRSSMRDRNKEEELRSDPRYAHLQKNLFLEVSTVAIPAECHSRIAYALAEIRKYL 181

[Close]

BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 87.0409 bits (214), Expect = 6.025e-19
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 3

Query:  105 PELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            PEL   K  +D   + A++   E I       L         R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:    8 PELVAEKESLDASFVHAMRLLAEEIEKFEGDEL---------RKDGEVKKYLDIISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 79.337 bits (194), Expect = 3.452e-16
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 3

Query:  144 QIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIAD-----FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +++A ++ L+   T    +LS+    EI R++ G        ++DL  +K V+V+ ++ IP  QYP  NFVGK+LGP  ST+K +QE T  K+++ G  + + KN          P + H   +LH+ I+      + Y +++HA+ EV+K L
Sbjct:   20 ELLAEKDSLDSSFTHAMKLLSA----EIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFL 168

[Close]

BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 79.337 bits (194), Expect = 3.745e-16
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 3

Query:  144 QIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIAD-----FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +++A ++ L+   T    +LS+    EI R++ G        ++DL  +K V+V+ ++ IP  QYP  NFVGK+LGP  ST+K +QE T  K+++ G  + + KN          P + H   +LH+ I+      + Y +++HA+ EV+K L
Sbjct:   20 ELLAEKDSLDSSFTHAMKLLSA----EIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFL 168

[Close]

BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 78.9518 bits (193), Expect = 4.091e-16
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 3

Query:  144 QIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIAD-----FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +++A ++ L+   T    +LS+    EI R++ G        ++DL  +K V+V+ ++ IP  QYP  NFVGK+LGP  ST+K +QE T  K+++ G  + + KN          P + H   +LH+ I+      + Y +++HA+ EV+K L
Sbjct:   20 ELLAEKDSLDSSFTHAMKLLSA----EIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFL 168

[Close]

BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 78.9518 bits (193), Expect = 4.091e-16
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 3

Query:  144 QIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIAD-----FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +++A ++ L+   T    +LS+    EI R++ G        ++DL  +K V+V+ ++ IP  QYP  NFVGK+LGP  ST+K +QE T  K+++ G  + + KN          P + H   +LH+ I+      + Y +++HA+ EV+K L
Sbjct:   20 ELLAEKDSLDSSFTHAMKLLSA----EIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFL 168

[Close]

BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:779662])

HSP 1 Score: 84.3445 bits (207), Expect = 8.476e-18
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 3

Query:  243 GIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            G   ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  ++LK +QE+T  KM+I G          E  ++ +     H +++LH+ ++    P EAY ++SHA+ E++K L
Sbjct:   45 GEKKYLDIISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: KHDRBS3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:NCBI gene;Acc:100379996])

HSP 1 Score: 83.1889 bits (204), Expect = 1.653e-17
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 3

Query:  222 EIHRLRGGIAD----FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            EI +L+ G  +    +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE T TKM+I G  + + K              +   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   29 EIEKLQKGEDNTEDQYIDVVINKNMKLAQKVLIPIKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKAKEEELRKSGEAKYYHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 154

[Close]

BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: pdc (phosducin [Source:Xenbase;Acc:XB-GENE-983832])

HSP 1 Score: 82.8037 bits (203), Expect = 3.153e-17
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = 3

Query:  207 SLGASEIHRLR-GGIAD------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVD 593
            SL   EI RL+ GG A       ++DL  +K +K++ +I IP   YP  NFVGK+LGP  +T+K +QE+T  K+++ G          E  ++   P + H    LH+ I+  G P E+Y +++HA+ EV+K L    P S+   D
Sbjct:   27 SLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERILIPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMDLHVFIEVFGPPCESYTRMAHAMEEVKKFLVPLTPESFSYQD 172

[Close]

BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: pdc (phosducin [Source:Xenbase;Acc:XB-GENE-983832])

HSP 1 Score: 82.0333 bits (201), Expect = 6.164e-17
Identity = 49/138 (35.51%), Postives = 78/138 (56.52%), Query Frame = 3

Query:  207 SLGASEIHRLR-GGIAD------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDHTE-KLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNL 569
            SL   EI RL+ GG A       ++DL  +K +K++ +I IP   YP  NFVGK+LGP  +T+K +QE+T  K+++ G          E  ++   P + H    LH+ I+  G P E+Y +++HA+ EV+K L  ++
Sbjct:   53 SLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERILIPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMDLHVFIEVFGPPCESYTRMAHAMEEVKKFLVPDM 190

[Close]

BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: spsb3 (splA/ryanodine receptor domain and SOCS box containing 3 [Source:Xenbase;Acc:XB-GENE-971062])

HSP 1 Score: 56.225 bits (134), Expect = 1.711e-8
Identity = 42/135 (31.11%), Postives = 64/135 (47.41%), Query Frame = 3

Query:  282 VKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK-------NMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPNNQNAVLVSTEYNMAPRVYTTP 662
            V+++ K+ +P  +YP  NFVG++LGP   T K ++ +T  K+ +RG  + + K         P ++H  E LH+ I        A  KL  A+ EV+K L        P V        L +T    APR+ T P
Sbjct:   81 VQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV-------PAVSITALAFSLAATA--QAPRIITGP 206

[Close]

BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:MGI Symbol;Acc:MGI:2159649])

HSP 1 Score: 87.0409 bits (214), Expect = 5.962e-19
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 3

Query:  204 SSLGASEIHRLRGGIAD-------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            S L A EI + +G           ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  ++LK +QE+T  KM+I G          E  ++     + H +++LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   25 SRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312])

HSP 1 Score: 85.5001 bits (210), Expect = 2.087e-18
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   45 YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 155

[Close]

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   45 YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 155

[Close]

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +ID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   45 YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 155

[Close]

BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312])

HSP 1 Score: 75.0998 bits (183), Expect = 3.006e-16
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 3

Query:  282 VKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQK----------NMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K              F   + LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:    1 MKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL 102

[Close]

BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|P13230|GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina OX=85549 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.944e-19
Identity = 47/127 (37.01%), Postives = 80/127 (62.99%), Query Frame = 3

Query:  249 ADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNMP---------VFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPN 599
            + F+DL  + KVK+ ++  +P DQ+P  NF+GKLLGPG ST+K +Q++T TK++I G  + + +N            + H  E+LH++I S+ +PAEA+ ++++A+ E++K +T       P  DPN
Sbjct:   61 SGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYIT-------PEEDPN 180

[Close]

BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5VWX1|KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens OX=9606 GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.400e-18
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 3

Query:  204 SSLGASEIHRLRGGIAD-------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            S L A EI + +G           ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  ++LK +QE+T  KM+I G          E  ++     + H +++LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   25 SRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q920F3|KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.711e-18
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 3

Query:  204 SSLGASEIHRLRGGIA-------DFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            S L A EI + +G           ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  ++LK +QE+T  KM+I G          E  ++     + H +++LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   25 SRLLAEEIEKFQGSDGRKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9WU01|KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus OX=10090 GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.170e-18
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 3

Query:  204 SSLGASEIHRLRGGIAD-------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            S L A EI + +G           ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  ++LK +QE+T  KM+I G          E  ++     + H +++LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   25 SRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q08BJ2|KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio OX=7955 GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.548e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 3

Query:  105 PELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            PEL   K  +D   + A++   E I       L         R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:    8 PELVAEKESLDASFVHAMRLLAEEIEKFEGDEL---------RKDGEVKKYLDIISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. TrEMBL
Match: A4V6L0 (Sam68-like mammalian protein 1 (Fragment) OS=Dugesia japonica OX=6161 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 7.445e-126
Identity = 188/243 (77.37%), Postives = 210/243 (86.42%), Query Frame = 3

Query:  114 KISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPNNQNAVLVSTEYNMAPRVYTTPXXXXXXXXXXXXXALRVSPRFVPPPAPTEWLNPEEANGGQELISGGPIHNEKNLNRITPY 842
            KISK FIDDQQIIAIQ+EL++I+ LNCPILS+L A EI RLRGGIAD+IDLILNKKVKVR K+DIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI+N K+  + + D  EKLHLQIDSLGTPAEAYYKLSHA+AEVQKCLTFNLP SYPTVDPNNQNAV + TEYNM PR Y +P+RG+QRGG RRG   R +PRFVPPPAP EW+ PEE NG Q++  GGPIH E+N +RI PY
Sbjct:    7 KISKSFIDDQQIIAIQSELDLIKDLNCPILSNLAAFEIDRLRGGIADYIDLILNKKVKVRAKVDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIDNQKKNAISIADQCEKLHLQIDSLGTPAEAYYKLSHAVAEVQKCLTFNLPLSYPTVDPNNQNAVQMVTEYNMTPRAYPSPVRGLQRGGARRGTVGRGNPRFVPPPAPAEWVKPEEPNGEQDISFGGPIHTERNPSRIAPY 249

[Close]

BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A504Y6P7 (KH domain containing RNA binding signal OS=Fasciola gigantica OX=46835 GN=FGIG_01542 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.339e-38
Identity = 77/160 (48.12%), Postives = 107/160 (66.88%), Query Frame = 3

Query:  111 LKISKPFIDDQQII-AIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI----ENPKQKNM-----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +K+ +P  +    + AI  EL+ +     P L +L  +E+ RLRGGIA+ IDL+ N++VK+R KIDIP  QYP  NFVGKLLGPG STL+++QE T TKM I G     +  K++ +     P + H  +KLHLQ+DSL  PAEAYY+LSHA+AE++K +
Sbjct:    1 MKMGEPRPEQSAAVEAIVRELKNLDETAFPALHALAENELFRLRGGIAESIDLVSNRQVKIRVKIDIPQTQYPNVNFVGKLLGPGGSTLRAVQESTKTKMAILGAGSLRDEAKERELLSNGDPKYQHLKQKLHLQVDSLAPPAEAYYRLSHALAELRKIM 160

[Close]

BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A2H1C8T8 (KH domain containing RNA binding signal OS=Fasciola hepatica OX=6192 GN=D915_006012 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.339e-38
Identity = 77/160 (48.12%), Postives = 107/160 (66.88%), Query Frame = 3

Query:  111 LKISKPFIDDQQII-AIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI----ENPKQKNM-----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +K+ +P  +    + AI  EL+ +     P L +L  +E+ RLRGGIA+ IDL+ N++VK+R KIDIP  QYP  NFVGKLLGPG STL+++QE T TKM I G     +  K++ +     P + H  +KLHLQ+DSL  PAEAYY+LSHA+AE++K +
Sbjct:    1 MKMGEPRPEQSAAVEAIVRELKNLDETAFPALHALAENELFRLRGGIAESIDLVSNRQVKIRVKIDIPQTQYPNVNFVGKLLGPGGSTLRAVQESTKTKMAILGAGSLRDEAKERELLSNGDPKYQHLKQKLHLQVDSLAPPAEAYYRLSHALAELRKIM 160

[Close]

BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A448X8Z0 (KH domain-containing protein (Fragment) OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS24519 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.606e-37
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = 3

Query:  165 ELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI----ENPKQKNM-----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIA 539
            ELE +     P L +L  SE+ RLRGGIAD I+++ NK+VK+R K++IP +QYP  NFVGKLLGPG  TL+SIQE+T TKM I G     +  K+K +     P + H  ++LHLQIDSL TP E+YY+LSHA++
Sbjct:   23 ELESLDQNAFPALHALAESELFRLRGGIADSIEIVDNKRVKIRAKVNIPTEQYPYINFVGKLLGPGGQTLRSIQEETKTKMAILGSGSLRDETKEKELLSNGDPKYQHLKQRLHLQIDSLATPVESYYRLSHALS 157

[Close]

BLAST of KH domain-containing protein vs. TrEMBL
Match: C1L818 (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.669e-37
Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 3

Query:  147 IIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI----ENPKQKNM-----PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            + A+  EL+ + + + P L SL  +E+ RLRGGIAD  DL+ NK VKVR KI+IP  QYPT NFVGKLLGPG  TL+++QE T TKM I G     +  K+K +     P + H  +KLHLQ+DSLG P+E+ Y+L+HA+AEV+K +
Sbjct:   14 VEALVRELQNLDSNSFPALYSLAENELFRLRGGIADSFDLVSNKPVKVRAKIEIPQAQYPTINFVGKLLGPGGQTLRAVQETTKTKMAILGAGSLRDEAKEKQLLSNGDPKYQHLKQKLHLQVDSLGPPSESCYRLAHALAEVRKIM 160

[Close]

BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 85.5001 bits (210), Expect = 1.592e-18
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 3

Query:  231 RLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   41 RKDGEVKKYLDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 85.8853 bits (211), Expect = 2.360e-18
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 3

Query:  231 RLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   41 RKDGEVKKYLDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 85.5001 bits (210), Expect = 2.376e-18
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 3

Query:  231 RLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   41 RKDGEVKKYLDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 85.8853 bits (211), Expect = 2.607e-18
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 3

Query:  231 RLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   41 RKDGEVKKYLDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 85.1149 bits (209), Expect = 2.997e-18
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 3

Query:  231 RLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I G          E  ++     + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   41 RKDGEVKKYLDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 88.5817 bits (218), Expect = 2.534e-20
Identity = 46/111 (41.44%), Postives = 71/111 (63.96%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNMP---------VFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            F+DL+ NK +K+  ++ IPA Q+P  NFVGKLLGP  ++LK +QE+T TKM+I G  + + K +           + H +E+LH+ I+    P+EAY ++ HA+ EV+K L
Sbjct:   26 FLDLVSNKNMKLAERVIIPAKQHPKFNFVGKLLGPRGNSLKRMQEETGTKMSILGKGSMRDKALEEEMRKSGENKYAHLSEELHVLIEVFAPPSEAYSRMGHALDEVKKYL 136

[Close]

BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 80.8777 bits (198), Expect = 5.405e-18
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLT 560
            FID++ N+ VK+  ++ IP  Q+P  NF+GKLLGP  ++LK ++E+T TK++I G          E+ ++     + H  E LH+ I+    P++AY ++ HA+ EV+K L 
Sbjct:   26 FIDVVSNRNVKLIERVIIPVRQHPKFNFIGKLLGPRGNSLKRLKEETGTKLSILGKGSMRDRDKEEDLRKSGEAKYAHLNEDLHVLIEVFAPPSQAYRRMGHALDEVKKYLV 137

[Close]

BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 69.707 bits (169), Expect = 1.208e-13
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 3

Query:  210 LGASEIHRLRGG-------IADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQK 551
            LGA EI RL+ G          + ++I  +  K+  K+ IPA Q+P  NFVGKLLGP  +TLK +Q +T T+M I G          E  +      + H  E+LH+ I+      EAY ++ HA+ EV+K
Sbjct:   29 LGA-EISRLQNGGDDKKDDDKKYRNIIGEQNFKLAEKVLIPAKQHPKFNFVGKLLGPQGNTLKRLQVETGTRMAIMGKGCMKDRAKEEELRNSGEAKYVHLNEELHVLIEVYAPLPEAYSRMGHALEEVKK 158

[Close]

BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: sf1 (splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492])

HSP 1 Score: 48.9062 bits (115), Expect = 9.136e-7
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 3

Query:  285 KVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG 419
            K+  +I IP D++P  NF+G ++GP  +TLK I+++ N K+ IRG
Sbjct:  205 KISERIMIPQDEHPDINFIGLIIGPRGNTLKKIEKECNAKIMIRG 249

[Close]

BLAST of KH domain-containing protein vs. Ensembl Yeast
Match: MSL5 (Component of commitment complex; which defines first step in splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000004106])

HSP 1 Score: 55.0694 bits (131), Expect = 6.231e-9
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 3

Query:  276 KKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG 419
            +  K + K  IP DQYP  NFVG LLGP   TL+ +QE +N K+ IRG
Sbjct:  144 RPTKFQDKYYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRG 191

[Close]

BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO44127 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWI4])

HSP 1 Score: 65.855 bits (159), Expect = 4.539e-13
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 3

Query:  270 LNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            L K VK+  K+ IP   +P  NFVGKLLGP  +T K +Q  T TKM+I G  + + K           P + H  E+LH+ I+    P +A+ +L  AI E++K L
Sbjct:   43 LYKPVKLSEKVFIPVKDHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDPKYAHLGEELHVLIEVEAPPGQAHARLGIAIEEIKKYL 148

[Close]

BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO30297 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T170])

HSP 1 Score: 57.3806 bits (137), Expect = 5.103e-10
Identity = 32/101 (31.68%), Postives = 52/101 (51.49%), Query Frame = 3

Query:  279 KVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM-------PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            +VK+  K+  P  ++P  NFVG+++GP   TL+ I+  T  K+ +RG  + K K +       P ++H  E LH+ I    T    + +L  A+  VQ  L
Sbjct:   50 RVKLVEKVYAPVKEFPKFNFVGRVIGPRGMTLREIESTTGCKLLVRGKGSMKDKKLEEEKRGQPNYEHLDEDLHVLISCEDTEERCHTRLEKAVERVQSLL 150

[Close]

BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO45484 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSV9])

HSP 1 Score: 51.6026 bits (122), Expect = 1.187e-7
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  282 VKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRG---IENPKQ---KNMPVFDHTEKLHLQIDSLGTPAEA 512
            +K++ K+ IP D+ P  NF+G L+GP  +TLK+++++TN K+ IRG   I++ KQ   ++M + +  E   L     G  AE+
Sbjct:  178 IKIQDKVMIPQDENPEVNFIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQGRGRDMQLMNSGEDEPLHALVTGPTAES 260

[Close]

BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO28641 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5W9])

HSP 1 Score: 46.595 bits (109), Expect = 1.476e-6
Identity = 20/56 (35.71%), Postives = 34/56 (60.71%), Query Frame = 3

Query:  279 KVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM 446
            +VK+  K+  P  ++P  NFVG+++GP   TL+ I+  T  K+ +RG  + K K +
Sbjct:   89 RVKLVEKVYAPVKEFPKFNFVGRVIGPRGMTLREIESTTGCKLLVRGKGSMKDKKL 144

[Close]

BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:NCBI gene;Acc:101171680])

HSP 1 Score: 87.8113 bits (216), Expect = 2.457e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            FID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE T TKM+I G          E  +Q     + H  E LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   46 FIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKEKEEELRQSGEAKYQHLNEDLHVLIEVFAPPAEAYARMGHALEEIKKFL 156

[Close]

BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:NCBI gene;Acc:101171680])

HSP 1 Score: 87.8113 bits (216), Expect = 2.779e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  255 FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---------ENPKQKNMPVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            FID+++NK +K+  K+ IP  Q+P  NFVGKLLGP  ++LK +QE T TKM+I G          E  +Q     + H  E LH+ I+    PAEAY ++ HA+ E++K L
Sbjct:   46 FIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKEKEEELRQSGEAKYQHLNEDLHVLIEVFAPPAEAYARMGHALEEIKKFL 156

[Close]

BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: khdrbs2 (KH RNA binding domain containing, signal transduction associated 2 [Source:NCBI gene;Acc:101155877])

HSP 1 Score: 85.8853 bits (211), Expect = 1.367e-18
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 3

Query:  105 PELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTI--RGIENPKQKNMPV-------FDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            PEL   K  +D   + A++   E I   +   L         R  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I  +G    K+K   +       + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:    8 PELVAEKNSLDPSFVHAVRLLAEEIEKYDGDEL---------RKDGDVKKYLDIISNKNIKLSERVLIPVRQYPKFNFVGKLLGPRGNSMKRLQEETGVKMSILGKGSMRDKEKEEELRKGGDAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 159

[Close]

BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: khdrbs2 (KH RNA binding domain containing, signal transduction associated 2 [Source:NCBI gene;Acc:101155877])

HSP 1 Score: 85.8853 bits (211), Expect = 1.464e-18
Identity = 48/140 (34.29%), Postives = 81/140 (57.86%), Query Frame = 3

Query:  174 IIRTLNCPILSSLGASEIHRLR--GGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTI--RGIENPKQKNMPV-------FDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCL 557
            I  +++  +L+ +   +   LR  G +  ++D+I NK +K+  ++ IP  QYP  NFVGKLLGP  +++K +QE+T  KM+I  +G    K+K   +       + H +  LH+ I+    P EAY ++SHA+ E++K L
Sbjct:   23 IHSSIHGKVLTEIEKYDGDELRKDGDVKKYLDIISNKNIKLSERVLIPVRQYPKFNFVGKLLGPRGNSMKRLQEETGVKMSILGKGSMRDKEKEEELRKGGDAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL 162

[Close]

BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: khdrbs1a (KH domain-containing, RNA-binding, signal transduction-associated protein 1 [Source:NCBI gene;Acc:101175524])

HSP 1 Score: 78.5666 bits (192), Expect = 5.221e-16
Identity = 54/173 (31.21%), Postives = 90/173 (52.02%), Query Frame = 3

Query:  144 QIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIAD-------FIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNM---------PVFDH-TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPNNQNA 611
            +++A ++ L+   T    +L    A+EI R++ G          ++DL   K +K++ ++ IP  QYP  NFVGKLLGP  ST+K +QE+T  K+++ G  + + KN            + H   +LH+ I+      EAY +++HA+ EV+K L        P +DP+  N 
Sbjct:    9 ELLAEKDSLDSSFTHAMKLL----AAEIERIQKGETKKEPEKETYLDLFATKSLKLKERVLIPIKQYPRVNFVGKLLGPQGSTIKRLQEETGAKISVLGKGSMRDKNKEEELRKGGEAKYAHLAMELHVFIEVTAPIPEAYMRMAHAMDEVKKFLIPEPGEHEPYMDPHFLNG 177

[Close]

BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000068335.1 (SMESG000068335.1)

HSP 1 Score: 479.559 bits (1233), Expect = 6.891e-173
Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 3

Query:   93 MADAPELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPNNQNAVLVSTEYNMAPRVYTTPXXXXXXXXXXXXXALRVSPRFVPPPAPTEWLNPEEANGGQELISGGPIHNEKNLNRITPY 842
            MADAPELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPNNQNAV VSTEYNMAPRVYTTPIRGIQRGGNRRGNALRVSPRFVPPPAPTEWLNPEEANGGQELISGGPIHNEKNLNRITPY
Sbjct:    1 MADAPELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGIENPKQKNMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPFSYPTVDPNNQNAVQVSTEYNMAPRVYTTPIRGIQRGGNRRGNALRVSPRFVPPPAPTEWLNPEEANGGQELISGGPIHNEKNLNRITPY 250

[Close]

BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 182.57 bits (462), Expect = 4.930e-56
Identity = 99/181 (54.70%), Postives = 123/181 (67.96%), Query Frame = 3

Query:  129 FIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---ENPKQKNMPVFDH-----TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPF----SYPTVDPNNQNAVLVSTEYN 635
            ++D  QI  ++ EL+ I     P L+SLG +E+HRLRGGIAD +DL  NKKVK+R K+ IP DQYP+ NFVGKLLGPGASTLK IQ QTNTKMTI G+   +N K++     D       +KLHLQIDSLGTPAEAYY+LSHA+ EVQ C+   LP     SY  V  N  N ++ S+ Y+
Sbjct:   10 YVDQSQIDILEQELKEIDD-KYPYLASLGEAELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQNKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYNWNNYMINSSTYD 189

[Close]

BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 182.57 bits (462), Expect = 5.361e-56
Identity = 99/181 (54.70%), Postives = 123/181 (67.96%), Query Frame = 3

Query:  129 FIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---ENPKQKNMPVFDH-----TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPF----SYPTVDPNNQNAVLVSTEYN 635
            ++D  QI  ++ EL+ I     P L+SLG +E+HRLRGGIAD +DL  NKKVK+R K+ IP DQYP+ NFVGKLLGPGASTLK IQ QTNTKMTI G+   +N K++     D       +KLHLQIDSLGTPAEAYY+LSHA+ EVQ C+   LP     SY  V  N  N ++ S+ Y+
Sbjct:   10 YVDQSQIDILEQELKEIDD-KYPYLASLGEAELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQNKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYNWNNYMINSSTYD 189

[Close]

BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 174.481 bits (441), Expect = 5.603e-53
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = 3

Query:  129 FIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---ENPKQKNMPVFDH-----TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPF----SYPTVDPNNQNAVLVSTEYN 635
            ++D  QI  ++ EL+ I     P L+SL   E+HRLRGGIAD +DL  NKKVK+R K+ IP DQYP+ NFVGKLLGPGASTLK IQ QTNTKMTI G+   +N K++     D       +KLHLQIDSLGTPAEAYY+LSHA+ EVQ C+   LP     SY  V  N  N ++ S+ Y+
Sbjct:   10 YVDQSQIDILEQELKEIDD-KYPYLASL---ELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQNKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYNWNNYMINSSTYD 186

[Close]

BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 174.866 bits (442), Expect = 6.272e-53
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = 3

Query:  129 FIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRGGIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQTNTKMTIRGI---ENPKQKNMPVFDH-----TEKLHLQIDSLGTPAEAYYKLSHAIAEVQKCLTFNLPF----SYPTVDPNNQNAVLVSTEYN 635
            ++D  QI  ++ EL+ I     P L+SL   E+HRLRGGIAD +DL  NKKVK+R K+ IP DQYP+ NFVGKLLGPGASTLK IQ QTNTKMTI G+   +N K++     D       +KLHLQIDSLGTPAEAYY+LSHA+ EVQ C+   LP     SY  V  N  N ++ S+ Y+
Sbjct:   10 YVDQSQIDILEQELKEIDD-KYPYLASL---ELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQNKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYNWNNYMINSSTYD 186

The following BLAST results are available for this feature:

BLAST of KH domain-containing protein vs. Ensembl Human
BLAST of KH domain-containing protein vs. Ensembl Celegans
BLAST of KH domain-containing protein vs. Ensembl Fly
BLAST of KH domain-containing protein vs. Ensembl Zebrafish
BLAST of KH domain-containing protein vs. Ensembl Xenopus
BLAST of KH domain-containing protein vs. Ensembl Mouse
BLAST of KH domain-containing protein vs. UniProt/SwissProt
BLAST of KH domain-containing protein vs. TrEMBL
BLAST of KH domain-containing protein vs. Ensembl Cavefish
BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
BLAST of KH domain-containing protein vs. Ensembl Yeast
BLAST of KH domain-containing protein vs. Ensembl Nematostella
BLAST of KH domain-containing protein vs. Ensembl Medaka
BLAST of KH domain-containing protein vs. Planmine SMEST

BLAST of KH domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
KHDRBS3	1.394e-19	39.64	KH RNA binding domain containing, signal transduct...	[more]
KHDRBS2	7.079e-19	36.30	KH RNA binding domain containing, signal transduct...	[more]
KHDRBS3	9.706e-19	39.64	KH RNA binding domain containing, signal transduct...	[more]
KHDRBS3	3.099e-18	39.64	KH RNA binding domain containing, signal transduct...	[more]
KHDRBS1	4.731e-16	33.08	KH RNA binding domain containing, signal transduct...	[more]

BLAST of KH domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
asd-2	6.633e-10	34.74	RNA-binding protein asd-2 [Source:UniProtKB/Swiss...	[more]
asd-2	1.141e-9	34.74	RNA-binding protein asd-2 [Source:UniProtKB/Swiss...	[more]
asd-2	1.194e-9	34.74	RNA-binding protein asd-2 [Source:UniProtKB/Swiss...	[more]
asd-2	1.352e-9	34.74	RNA-binding protein asd-2 [Source:UniProtKB/Swiss...	[more]
Y69A2AR.32	3.453e-8	29.52	pep chromosome:WBcel235:IV:2610408:2612430:1 gene:...	[more]

BLAST of KH domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
qkr58E-3	1.342e-16	33.91	gene:FBgn0022984 transcript:FBtr0339538	[more]
qkr58E-3	1.342e-16	33.91	gene:FBgn0022984 transcript:FBtr0307214	[more]
qkr58E-3	1.342e-16	33.91	gene:FBgn0022984 transcript:FBtr0290254	[more]
CG3927	2.374e-15	32.17	gene:FBgn0034739 transcript:FBtr0071853	[more]
CG4021	2.821e-15	32.11	gene:FBgn0034659 transcript:FBtr0071716	[more]

BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
khdrbs2	6.025e-19	32.92	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs1a	3.452e-16	32.03	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs1a	3.745e-16	32.03	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs1a	4.091e-16	32.03	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs1a	4.091e-16	32.03	KH domain containing, RNA binding, signal transduc...	[more]

BLAST of KH domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
khdrbs2	8.476e-18	37.39	KH domain containing, RNA binding, signal transduc...	[more]
KHDRBS3	1.653e-17	37.30	KH domain containing, RNA binding, signal transduc...	[more]
pdc	3.153e-17	35.62	phosducin [Source:Xenbase;Acc:XB-GENE-983832]	[more]
pdc	6.164e-17	35.51	phosducin [Source:Xenbase;Acc:XB-GENE-983832]	[more]
spsb3	1.711e-8	31.11	splA/ryanodine receptor domain and SOCS box contai...	[more]

BLAST of KH domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Khdrbs2	5.962e-19	36.30	KH domain containing, RNA binding, signal transduc...	[more]
Khdrbs3	2.087e-18	39.64	KH domain containing, RNA binding, signal transduc...	[more]
Khdrbs3	2.087e-18	39.64	KH domain containing, RNA binding, signal transduc...	[more]
Khdrbs3	2.087e-18	39.64	KH domain containing, RNA binding, signal transduc...	[more]
Khdrbs3	3.006e-16	39.22	KH domain containing, RNA binding, signal transduc...	[more]

BLAST of KH domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P13230\|GRP33_ARTSA	5.944e-19	37.01	Glycine-rich protein GRP33 OS=Artemia salina OX=85...	[more]
sp\|Q5VWX1\|KHDR2_HUMAN	3.400e-18	36.30	KH domain-containing, RNA-binding, signal transduc...	[more]
sp\|Q920F3\|KHDR2_RAT	3.711e-18	36.30	KH domain-containing, RNA-binding, signal transduc...	[more]
sp\|Q9WU01\|KHDR2_MOUSE	4.170e-18	36.30	KH domain-containing, RNA-binding, signal transduc...	[more]
sp\|Q08BJ2\|KHDR2_DANRE	4.548e-18	32.92	KH domain-containing, RNA-binding, signal transduc...	[more]

BLAST of KH domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A4V6L0	7.445e-126	77.37	Sam68-like mammalian protein 1 (Fragment) OS=Duges...	[more]
A0A504Y6P7	3.339e-38	48.13	KH domain containing RNA binding signal OS=Fasciol...	[more]
A0A2H1C8T8	3.339e-38	48.13	KH domain containing RNA binding signal OS=Fasciol...	[more]
A0A448X8Z0	7.606e-37	52.59	KH domain-containing protein (Fragment) OS=Protopo...	[more]
C1L818	7.669e-37	51.02	KH domain-containing, RNA-binding, signal transduc...	[more]

BLAST of KH domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
khdrbs2	1.592e-18	36.97	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs2	2.360e-18	36.97	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs2	2.376e-18	36.97	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs2	2.607e-18	36.97	KH domain containing, RNA binding, signal transduc...	[more]
khdrbs2	2.997e-18	36.97	KH domain containing, RNA binding, signal transduc...	[more]

BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4


Match Name	E-value	Identity	Description
khdrbs2	2.534e-20	41.44	KH domain containing, RNA binding, signal transduc...	[more]
KHDRBS3	5.405e-18	36.61	KH RNA binding domain containing, signal transduct...	[more]
khdrbs1a	1.208e-13	36.64	KH domain containing, RNA binding, signal transduc...	[more]
sf1	9.136e-7	44.44	splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131...	[more]

BLAST of KH domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
MSL5	6.231e-9	52.08	Component of commitment complex; which defines fir...	[more]

BLAST of KH domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4


Match Name	E-value	Identity	Description
EDO44127	4.539e-13	38.68	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO30297	5.103e-10	31.68	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO45484	1.187e-7	36.14	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO28641	1.476e-6	35.71	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of KH domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
KHDRBS3	2.457e-19	42.34	KH RNA binding domain containing, signal transduct...	[more]
KHDRBS3	2.779e-19	42.34	KH RNA binding domain containing, signal transduct...	[more]
khdrbs2	1.367e-18	33.54	KH RNA binding domain containing, signal transduct...	[more]
khdrbs2	1.464e-18	34.29	KH RNA binding domain containing, signal transduct...	[more]
khdrbs1a	5.221e-16	31.21	KH domain-containing, RNA-binding, signal transduc...	[more]

BLAST of KH domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000068335.1	6.891e-173	99.60	SMESG000068335.1	[more]
SMESG000057199.1	4.930e-56	54.70	SMESG000057199.1	[more]
SMESG000057199.1	5.361e-56	54.70	SMESG000057199.1	[more]
SMESG000057199.1	5.603e-53	54.14	SMESG000057199.1	[more]
SMESG000057199.1	6.272e-53	54.14	SMESG000057199.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30003741 ID=SMED30003741|Name=KH domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=971bp
AATATTTACCAATTTTAAAAATTACTAATTGAGAATTTCTTTTGTCTTTG
TTTTAAATTACATATCGTTATTTAATATTTAAATATTTTAAAATGGCAGA
TGCTCCAGAATTAAAAATTTCAAAACCATTTATTGATGATCAACAAATAA
TTGCAATTCAGAATGAATTGGAAATTATTAGAACCCTAAATTGTCCTATT
TTATCTAGTCTTGGAGCTTCTGAAATCCACAGGTTGAGAGGAGGAATAGC
TGATTTTATAGATTTAATTTTAAATAAAAAAGTTAAAGTAAGAACTAAAA
TTGATATACCAGCGGATCAGTATCCAACGACTAATTTTGTTGGGAAATTA
CTTGGACCTGGTGCAAGTACTTTGAAAAGTATTCAAGAACAAACCAATAC
CAAAATGACAATTCGTGGAATTGAAAATCCAAAGCAAAAGAATATGCCTG
TTTTCGATCACACTGAAAAATTACATTTACAGATAGATAGTTTAGGAACA
CCAGCTGAGGCTTACTATAAATTATCTCACGCAATTGCTGAAGTACAAAA
GTGCTTAACATTTAACCTTCCGTTCAGTTATCCTACTGTGGACCCTAATA
ATCAAAATGCAGTTCTGGTAAGTACAGAATATAATATGGCTCCACGTGTG
TACACAACACCAATAAGAGGTATCCAACGAGGTGGAAATAGAAGAGGAAA
CGCTCTACGAGTTAGTCCACGATTTGTCCCTCCTCCAGCTCCAACCGAAT
GGTTGAATCCTGAAGAAGCCAATGGCGGGCAAGAATTGATATCAGGAGGT
CCTATTCACAATGAAAAGAATTTGAATCGTATCACTCCATACTAAGGCAT
CAATAACAGTGAAAATTAATGTATTATAATATTAAACGTTTAATTGCAAA
TTGGAGTTCTGTTTTTATTAAATATTTTGGATATTATTTAACAATCAAAA
TTTTTGTTTGGCGTAAACCTG

protein sequence of SMED30003741-orf-1

>SMED30003741-orf-1 ID=SMED30003741-orf-1|Name=SMED30003741-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=251bp
MADAPELKISKPFIDDQQIIAIQNELEIIRTLNCPILSSLGASEIHRLRG
GIADFIDLILNKKVKVRTKIDIPADQYPTTNFVGKLLGPGASTLKSIQEQ
TNTKMTIRGIENPKQKNMPVFDHTEKLHLQIDSLGTPAEAYYKLSHAIAE
VQKCLTFNLPFSYPTVDPNNQNAVLVSTEYNMAPRVYTTPIRGIQRGGNR
RGNALRVSPRFVPPPAPTEWLNPEEANGGQELISGGPIHNEKNLNRITPY
*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 64..153 e-value: 4.1E-6 score: 36.3
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 16..162 e-value: 1.5E-24 score: 89.2
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 67..156
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 69..114 e-value: 9.9E-7 score: 28.5
None	No IPR available	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 49..176
None	No IPR available	PANTHER	PTHR11208:SF43	GH05812P-RELATED	coord: 49..176