SMED30003706

Overview
NameSMED30003706
Smed IDSMED30003706
Length (bp)2559
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30003706 (SMED30003706) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30003706 (SMED30003706) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30003706

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30003706h1SMcG0006988 Contig14923uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30003706h1SMcG0006988 Contig14923newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30003706 vs. Planmine SMEST
Match: SMESG000044313.1 (SMESG000044313.1)

HSP 1 Score: 1070.46 bits (2767), Expect = 0.000e+0
Identity = 527/568 (92.78%), Postives = 528/568 (92.96%), Query Frame = 2 
Query:  806 FGVRSIIANILLHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVVIYVLVTLMIPLVFIITAYFVTISKFKETIQSEIISRLGFAKQEIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 2509
             GVRSIIANILLHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIV I       +PL                               EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY
Sbjct:  287 LGVRSIIANILLHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVHI------SLPL-------------------------------EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 817
[Close]
BLAST of SMED30003706 vs. Planmine SMEST
Match: SMESG000044313.1 (SMESG000044313.1)

HSP 1 Score: 1030.39 bits (2663), Expect = 0.000e+0
Identity = 511/557 (91.74%), Postives = 513/557 (92.10%), Query Frame = 2 
Query:  839 LHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVVIYVLVTLMIPLVFIITAYFVTISKFKETIQSEIISRLGFAKQEIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 2509
            L R+  L YT KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIV I       +PL                               EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY
Sbjct:  305 LKRDIFLLYT-KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVHI------SLPL-------------------------------EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 823
[Close]
BLAST of SMED30003706 vs. Planmine SMEST
Match: SMESG000044313.1 (SMESG000044313.1)

HSP 1 Score: 1030.01 bits (2662), Expect = 0.000e+0
Identity = 511/557 (91.74%), Postives = 513/557 (92.10%), Query Frame = 2 
Query:  839 LHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVVIYVLVTLMIPLVFIITAYFVTISKFKETIQSEIISRLGFAKQEIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 2509
            L R+  L YT KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIV I       +PL                               EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY
Sbjct:  249 LKRDIFLLYT-KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVHI------SLPL-------------------------------EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 767
[Close]
BLAST of SMED30003706 vs. Planmine SMEST
Match: SMESG000044313.1 (SMESG000044313.1)

HSP 1 Score: 1023.85 bits (2646), Expect = 0.000e+0
Identity = 511/561 (91.09%), Postives = 513/561 (91.44%), Query Frame = 2 
Query:  839 LHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVVIYVLVTLMIPLVFIITAYFVTISKFKETIQSEIISRLGFAKQEIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAI----KDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 2509
            L R+  L YT KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIV I       +PL                               EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAI    KDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY
Sbjct:  305 LKRDIFLLYT-KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEMAYEAQSDLAWVIVHI------SLPL-------------------------------EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKFNEKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 827
[Close]
BLAST of SMED30003706 vs. Planmine SMEST
Match: SMESG000044313.1 (SMESG000044313.1)

HSP 1 Score: 1021.54 bits (2640), Expect = 0.000e+0
Identity = 510/563 (90.59%), Postives = 513/563 (91.12%), Query Frame = 2 
Query:  839 LHRETQLNYTSKYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLV------DNGMENCEMAYEAQSDLAWVIVVIYVLVTLMIPLVFIITAYFVTISKFKETIQSEIISRLGFAKQEIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 2509
            L R+  L YT KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLV      +NGMENCEMAYEAQSDLAWVIV I       +PL                               EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY
Sbjct:  305 LKRDIFLLYT-KYDGKDCTESLLAFYNPCVTCIKGVNNESDFYIKINTLSNQDNNSYFIENTIFCINNLWVPEIVTKITGSLYLRSINTDVPEILRKIQDFSFNVEYSIITNFDLSPKTGSINLPVTFIAKCDVYNHTEVTISLHGANFLASNNTCYVELNIPVLNISSIIVKTFINYGKYWSNYSHEYPVGRIPSIVMITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNAFLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVAFILKINNGMENCEMAYEAQSDLAWVIVHI------SLPL-------------------------------EIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTNRKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARSFSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPWRKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWTFRKSNDEYY 829
The following BLAST results are available for this feature:
BLAST of SMED30003706 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003706 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000044313.10.000e+092.78SMESG000044313.1[more]
SMESG000044313.10.000e+091.74SMESG000044313.1[more]
SMESG000044313.10.000e+091.74SMESG000044313.1[more]
SMESG000044313.10.000e+091.09SMESG000044313.1[more]
SMESG000044313.10.000e+090.59SMESG000044313.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003706 ID=SMED30003706|Name=SMED30003706|organism=Schmidtea mediterranea sexual|type=transcript|length=2559bp
ATTTTTTTATTTCCTTATTTAATTTCAATTTATCATTTAATGTTTATCCG
TACTACACTGTCTGTGCTTATATGATCTATGCCAATTTTCACAATTGCGT
CCATGCTAATGATCATGTCTTTGTTTAATGACAATTCATCCATCAAGAGG
CACGATAGAACAATTGGAATTGGAGTAAACGGTGAGGACTCCCGGTACCT
CAACTTTCAGTCATTAACTGTAAGAATCTACTTGCTTGAAACAATTAACG
TAATTATATAACTTACGACTTTCAAATAGTTAAAATATTTGAATCGTGTC
ATGATGGAGAATATTTAAGTGTTTCAGAAATATATTGAATTAGAATTGTA
ATTGAGAACCGTGCTGAGCCAAACTTTTAAAGAAGTCCGTTCTTAATTAG
TAAGAGCTAACGAGAAAGAGAAAACAAAAAATGGGAATGAAATATCCTTA
TCTTAAAAGTTTGCCAGAGCTAACAAAAGGATTTTTGATTAAATCGGCCA
AATAAAAAAGTAGAAAACCCTCCGTGATCAAAATGGAATTGTATGTCAAT
TTTTAGTTTGAGGACGAATATCTCAAATAGCAGCCTGTAAAAGGCAGAGA
AACTATTAGGGAAATCAGAAGAATAAACCGAGAAGAAAAACTGAGATGAA
GCTTAAGAGAGAACAATTATTTGAATTCCAAGGTGCTATTCTTCCTGAAA
GGTCGTAATAAGCACGTTATTGTTGCAATATTGAGTTATTTGTCTCGTAA
ATACTGGCGAATAAAAGTTATATTGTCTTAAATTCTTTATAGAGCCAAAA
CACGCTTTGGAGTTAGATCAATAATTGCTAATATTCTATTACACCGAGAA
ACTCAACTAAATTATACATCGAAGTATGATGGAAAGGATTGCACGGAAAG
TTTGCTTGCATTCTACAACCCTTGCGTCACATGTATCAAAGGCGTGAATA
ATGAAAGTGATTTCTACATAAAAATTAATACGCTTTCCAATCAGGATAAT
AATTCATATTTTATAGAAAATACGATTTTTTGCATTAACAATCTATGGGT
TCCGGAAATTGTAACTAAAATAACCGGCAGTTTATATTTACGCAGCATTA
ATACGGATGTGCCGGAAATTTTGAGAAAAATCCAAGACTTTTCATTTAAC
GTTGAATATTCAATCATAACAAATTTTGACTTGTCCCCAAAAACCGGGAG
CATTAACCTACCTGTCACATTTATTGCGAAATGCGATGTATATAATCATA
CAGAAGTTACCATCTCTTTACATGGAGCTAATTTCCTAGCGTCTAACAAT
ACGTGTTACGTCGAGTTGAACATTCCTGTGTTGAACATTTCTTCAATCAT
AGTGAAAACGTTTATAAATTATGGAAAATATTGGTCAAATTATTCTCACG
AATATCCAGTTGGAAGAATCCCAAGCATTGTAATGATCACATCTCGTTAT
CCGAAATTTGGAGAAAGAGTTCAATGCCTAACAGATGGAATAGATCATTT
ATACGCTTTCAGTTGGGCTTGCAATACCTCAAATGAACCAAGGGATTTAG
TTGTGGTGGATTACATAACCTTTGACAATGCTTTTCTTACATTTCATGAA
ACCTCTCCATTAATAAAGTTTCATTGTATATGTTCTTGCATTTACATAAC
CTCGTTCGGAAGAGAGGTATTCTCGGTTTCTGCTACCATTGAATTCGACC
TAGTAGACAACGGAATGGAAAATTGTGAAATGGCCTATGAAGCTCAATCT
GATTTAGCGTGGGTCATAGTGGTAATTTATGTTCTTGTGACTCTCATGAT
CCCCCTGGTTTTTATCATCACAGCATATTTCGTTACCATTAGTAAATTTA
AGGAGACAATACAATCAGAAATTATTAGTAGGTTGGGTTTTGCAAAACAG
GAAATAATAAGGGATCAGGATGTAATGCCATACGTTGTGATGGATAAGAC
AGATATTGGAGAATCTGTATTCAAAACCTTTCAATGCGGATTGCAAGAAT
TGGAAAAAAATGCAATAAACATGAAAACTAATAGGAAACCTTGCTTCCAC
CGAACTCTACAGAAAACATCAAAAATTAACCCCTACAACATACCTTTACA
GAAATCCTCGTTCATTGCGTTAAAAATAGATAAACGAATCGCTCTTTTGA
AAGAATTGGAAAATCGTCAGCTTGCAAGAAGTTTCAGTTCGTCTAATAGA
CCAGAATATTATTTGTTTAAAAAGAAATCAAGTGGAATACATGATATGTC
CAAATTTTCAGTTGATTCAATTCCGGACGAAAATAATCTTCGAAAATACA
CTTTACCTCTTCCTGAAATCGTAACTCCATGGAGAAAACATAGTTTATCT
TTGCCATCTTCCAGATCTGACCGATACGATGCTATAAAAGATAGCGTTAT
GATGACTCAAATGAAACGAATTTTGGGAAAAACATCAAAAGGAAGTTCTT
CGGCTTACAGGCCGAAGTTGGGAGTTTGGACATTTAGAAAGAGTAATGAC
GAATACTATTAAAACTTGGTAGAATATTGTATTTGTAATAGGAATTACAT
TTAAACAAG
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protein sequence of SMED30003706-orf-1

>SMED30003706-orf-1 ID=SMED30003706-orf-1|Name=SMED30003706-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=360bp
MITSRYPKFGERVQCLTDGIDHLYAFSWACNTSNEPRDLVVVDYITFDNA
FLTFHETSPLIKFHCICSCIYITSFGREVFSVSATIEFDLVDNGMENCEM
AYEAQSDLAWVIVVIYVLVTLMIPLVFIITAYFVTISKFKETIQSEIISR
LGFAKQEIIRDQDVMPYVVMDKTDIGESVFKTFQCGLQELEKNAINMKTN
RKPCFHRTLQKTSKINPYNIPLQKSSFIALKIDKRIALLKELENRQLARS
FSSSNRPEYYLFKKKSSGIHDMSKFSVDSIPDENNLRKYTLPLPEIVTPW
RKHSLSLPSSRSDRYDAIKDSVMMTQMKRILGKTSKGSSSAYRPKLGVWT
FRKSNDEYY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002089reproductive organ