SMED30003704

Overview
NameSMED30003704
Smed IDSMED30003704
Length (bp)857
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30003704 (SMED30003704) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30003704 (SMED30003704) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30003704 (SMED30003704) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30003704 (SMED30003704) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30003704

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30003704SMESG000043698.1 dd_Smed_v4_1603_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30003704 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000883:89562..90445 +4144
Homology
[Close]
BLAST of SMED30003704 vs. Ensembl Human
Match: PYURF (PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317])

HSP 1 Score: 49.2914 bits (116), Expect = 4.808e-7
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 2 
Query:  194 DPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIII 328
            DP  L+FLVCPLSK  L Y +   EL   E+ +AY I+DGIP +I
Sbjct:   51 DPALLEFLVCPLSKKPLRYEASTNELINEELGIAYPIIDGIPNMI 95
[Close]
BLAST of SMED30003704 vs. Ensembl Xenopus
Match: PYURF (PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317])

HSP 1 Score: 47.7506 bits (112), Expect = 3.230e-6
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 2 
Query:  194 DPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIARE 337
            DP  L FLVCPLS+  L Y     EL   E+ +AY IVDGIP +I ++
Sbjct:   90 DPTLLQFLVCPLSRKSLRYEESTNELINDELGIAYPIVDGIPNMIPQD 137
[Close]
BLAST of SMED30003704 vs. Ensembl Mouse
Match: Pyurf (Pigy upstream reading frame [Source:MGI Symbol;Acc:MGI:1913709])

HSP 1 Score: 46.595 bits (109), Expect = 2.378e-6
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 2 
Query:  194 DPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIII 328
             P  L FLVCPLSK  L Y +   EL   E+ +AY I+DGIP +I
Sbjct:   49 HPALLQFLVCPLSKKPLRYEASTNELVNEELGIAYPIIDGIPNMI 93
[Close]
BLAST of SMED30003704 vs. UniProt/SwissProt
Match: sp|Q2K364|Y3977_RHIEC (UPF0434 protein RHE_CH03977 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=RHE_CH03977 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.330e-8
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 2 
Query:  188 RNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFD 352
            R DP+ L+ LVCPLSK +LSY+    EL   + Q+AY I DGIPI++  E    D
Sbjct:    7 RVDPKLLELLVCPLSKGRLSYDREHNELVSEKAQLAYPIRDGIPIMLVSEARRLD 61
[Close]
BLAST of SMED30003704 vs. UniProt/SwissProt
Match: sp|B5ZTJ9|Y3773_RHILW (UPF0434 protein Rleg2_3773 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=Rleg2_3773 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.653e-8
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 2 
Query:  188 RNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFD 352
            R DP+ LD LVCPLSK +LSY+    EL   + ++AY I DGIPI++  E    D
Sbjct:    7 RVDPKLLDLLVCPLSKGRLSYDREHNELVSEKARLAYPIRDGIPIMLVSEARRLD 61
[Close]
BLAST of SMED30003704 vs. UniProt/SwissProt
Match: sp|B0UM25|Y487_METS4 (UPF0434 protein M446_0487 OS=Methylobacterium sp. (strain 4-46) OX=426117 GN=M446_0487 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.819e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  185 VRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIARE 337
             R DP+ L+ LVCPL+K +L Y+S ++EL     ++AY I DGIPI++  E
Sbjct:   10 TRIDPKLLELLVCPLTKGRLEYDSARQELISRSAKLAYPIRDGIPIMLPEE 60
[Close]
BLAST of SMED30003704 vs. UniProt/SwissProt
Match: sp|B8IPV3|Y1613_METNO (UPF0434 protein Mnod_1613 OS=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) OX=460265 GN=Mnod_1613 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 9.455e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  185 VRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIARE 337
             R DP+ L+ LVCPL+K +L Y+S ++EL     ++AY I DGIPI++  E
Sbjct:   10 TRIDPKLLELLVCPLTKGRLEYDSARQELISRSAKLAYPIRDGIPIMLPEE 60
[Close]
BLAST of SMED30003704 vs. UniProt/SwissProt
Match: sp|B3PR35|Y4260_RHIE6 (UPF0434 protein RHECIAT_CH0004260 OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=RHECIAT_CH0004260 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.047e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2 
Query:  188 RNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFD 352
            R DP+ L+ LVCPLSK +LSY+    EL   + ++AY I DGIPI++  E    D
Sbjct:    7 RVDPKLLELLVCPLSKGRLSYDREHNELVSEKARLAYPIRDGIPIMLVSEARRLD 61
[Close]
BLAST of SMED30003704 vs. TrEMBL
Match: C1BGX7 (PreY, mitochondrial OS=Oncorhynchus mykiss OX=8022 GN=PREY PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.612e-8
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:   89 FCNAHLKLKD*LKY-HMIRTVFRYSSSFKHFPKVRN----DPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIII 328
             CN  L+ +   KY H +R V   S S +H   V++    D   L+FLVCPLSK QL Y     EL   E+ +AY I+DGIP +I
Sbjct:    9 LCNETLRFQTTAKYVHFLRGVRPLSVSARHLTDVKDALPFDTSLLEFLVCPLSKKQLRYEEKTNELINEELGIAYPIIDGIPNMI 93
[Close]
BLAST of SMED30003704 vs. TrEMBL
Match: A0A3D9Z315 (UPF0434 protein DES32_0709 OS=Methylovirgula ligni OX=569860 GN=DES32_0709 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.086e-7
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:  179 PKVRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFDM 355
            PK R DPR L+ LVCPL+K  L Y++ K+EL     ++AY I DGIPI++  E    D+
Sbjct:   15 PKTRIDPRLLEILVCPLTKTTLEYDAQKQELISRAAKLAYPIRDGIPIMLPEEARPLDV 73
[Close]
BLAST of SMED30003704 vs. TrEMBL
Match: A0A061AFP5 (Uncharacterized protein OS=Oncorhynchus mykiss OX=8022 GN=GSONMT00009444001 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.819e-7
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:   89 FCNAHLKLKD*LKY-HMIRTVFRYSSSFKHFPKVRN----DPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIII 328
             CN  L+ +  +KY + +R V   S S +H   V++    D   L+FLVCPLSK QL Y     EL   E+ +AY I+DGIP +I
Sbjct:    9 LCNETLRFQTTVKYVNFLRGVRPLSVSARHLTDVKDALPFDTSLLEFLVCPLSKKQLRYEEKTNELINEELGIAYPIIDGIPNMI 93
[Close]
BLAST of SMED30003704 vs. TrEMBL
Match: A0A0B1Q0V7 (UPF0434 protein LA66_19980 OS=Aureimonas altamirensis OX=370622 GN=LA66_19980 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.321e-7
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 2 
Query:  185 VRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFD 352
            +R DP+ L+ LVCPL+K QLSY+S + EL   +  +AY I DGIPI++  E    D
Sbjct:    7 IRPDPKLLELLVCPLTKGQLSYDSERNELVSRKAGLAYPIRDGIPIMLPSEARILD 62
[Close]
BLAST of SMED30003704 vs. TrEMBL
Match: C1BIF9 (PreY, mitochondrial OS=Oncorhynchus mykiss OX=8022 GN=PREY PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.878e-7
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 2 
Query:   89 FCNAHLKLKD*LKY-HMIRTVFRYSSSFKHFPKVRN----DPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIII 328
             CN  L+ +  +KY + +R V     S +H   V++    D   L+FLVCPLSK QL Y    +EL   E+++AY I+DGIP +I
Sbjct:    9 LCNETLRFQTSVKYVNFLRGVRPLPVSARHLTDVKDALPFDTSLLEFLVCPLSKKQLRYEEKTDELINEELRIAYPIIDGIPNMI 93
[Close]
BLAST of SMED30003704 vs. Ensembl Cavefish
Match: zgc:162634 (pep primary_assembly:Astyanax_mexicanus-2.0:24:26509090:26514451:1 gene:ENSAMXG00000036941.1 transcript:ENSAMXT00000040655.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:zgc:162634)

HSP 1 Score: 46.595 bits (109), Expect = 1.607e-6
Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 2 
Query:  134 MIRTVFRYSSSFKHFPKVRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIARE 337
            ++ T  R SS  K     R+    L  LVCPLSK  L YN    EL   E+ +AY I+DGIP +I ++
Sbjct:   17 LLNTQRRLSSGLKG--DDRSVESVLQLLVCPLSKTPLRYNKETNELINEELGIAYPIIDGIPNMIPQD 82
[Close]
BLAST of SMED30003704 vs. Ensembl Nematostella
Match: EDO41571 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S3Z0])

HSP 1 Score: 43.8986 bits (102), Expect = 5.045e-6
Identity = 24/60 (40.00%), Postives = 33/60 (55.00%), Query Frame = 2 
Query:  182 KVRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFDMAN 361
            K + D + LD LVCPLSK  L YN+   EL   EI VA+ I  GIP ++  +    +  +
Sbjct:   37 KQKFDVKLLDILVCPLSKKPLRYNAETNELISDEIGVAFSIEQGIPNLVPTDGKLLNTTD 96
[Close]
BLAST of SMED30003704 vs. Ensembl Medaka
Match: zgc:162634 (PIGY upstream reading frame [Source:NCBI gene;Acc:101159718])

HSP 1 Score: 45.8246 bits (107), Expect = 3.637e-6
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 2 
Query:  206 LDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIARE 337
            LD L CPLSK  L YN    EL   E+ +AY I+DGIP +I ++
Sbjct:   54 LDVLACPLSKKPLRYNPDTNELINEELGIAYPIIDGIPNMIPQD 97
[Close]
BLAST of SMED30003704 vs. Planmine SMEST
Match: SMESG000043698.1 (SMESG000043698.1)

HSP 1 Score: 190.274 bits (482), Expect = 9.740e-62
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2 
Query:  134 MIRTVFRYSSSFKHFPKVRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFDMANSFPFRILKNGEFKHPF 409
            MIRTVFRYSSSFKHFPKVRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFDMANSFPFRILKNGEFKHPF
Sbjct:    1 MIRTVFRYSSSFKHFPKVRNDPRRLDFLVCPLSKIQLSYNSFKEELECAEIQVAYKIVDGIPIIIAREDTCFDMANSFPFRILKNGEFKHPF 92
The following BLAST results are available for this feature:
BLAST of SMED30003704 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
PYURF4.808e-753.33PIGY upstream reading frame [Source:HGNC Symbol;Ac... [more]
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BLAST of SMED30003704 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003704 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003704 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003704 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
PYURF3.230e-650.00PIGY upstream reading frame [Source:HGNC Symbol;Ac... [more]
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BLAST of SMED30003704 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Pyurf2.378e-651.11Pigy upstream reading frame [Source:MGI Symbol;Acc... [more]
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BLAST of SMED30003704 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q2K364|Y3977_RHIEC2.330e-849.09UPF0434 protein RHE_CH03977 OS=Rhizobium etli (str... [more]
sp|B5ZTJ9|Y3773_RHILW2.653e-849.09UPF0434 protein Rleg2_3773 OS=Rhizobium leguminosa... [more]
sp|B0UM25|Y487_METS48.819e-847.06UPF0434 protein M446_0487 OS=Methylobacterium sp. ... [more]
sp|B8IPV3|Y1613_METNO9.455e-847.06UPF0434 protein Mnod_1613 OS=Methylobacterium nodu... [more]
sp|B3PR35|Y4260_RHIE61.047e-747.27UPF0434 protein RHECIAT_CH0004260 OS=Rhizobium etl... [more]
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BLAST of SMED30003704 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
C1BGX79.612e-842.35PreY, mitochondrial OS=Oncorhynchus mykiss OX=8022... [more]
A0A3D9Z3152.086e-747.46UPF0434 protein DES32_0709 OS=Methylovirgula ligni... [more]
A0A061AFP53.819e-741.18Uncharacterized protein OS=Oncorhynchus mykiss OX=... [more]
A0A0B1Q0V75.321e-748.21UPF0434 protein LA66_19980 OS=Aureimonas altamiren... [more]
C1BIF96.878e-740.00PreY, mitochondrial OS=Oncorhynchus mykiss OX=8022... [more]
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BLAST of SMED30003704 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zgc:1626341.607e-641.18pep primary_assembly:Astyanax_mexicanus-2.0:24:265... [more]
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BLAST of SMED30003704 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003704 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003704 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO415715.045e-640.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30003704 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zgc:1626343.637e-650.00PIGY upstream reading frame [Source:NCBI gene;Acc:... [more]
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BLAST of SMED30003704 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000043698.19.740e-62100.00SMESG000043698.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003704 ID=SMED30003704|Name=SMED30003704|organism=Schmidtea mediterranea sexual|type=transcript|length=857bp
CGTTACAGNNNNANTNNGTTTAAATAATAAGGTTTAAGTCTTTAAAAGTT
AAGTAAAATCTTTTGAAGAACTTGTTTAAACGGAATAGTTCTGTAACGCA
CATTTAAAATTGAAAGATTAATTAAAGTATCATATGATTCGTACGGTTTT
CAGGTACTCCAGTTCATTCAAGCATTTTCCAAAGGTCAGAAACGATCCTA
GGAGATTAGATTTTTTAGTTTGCCCTTTGTCAAAGATACAATTAAGCTAT
AATTCATTTAAAGAAGAACTAGAGTGTGCTGAAATTCAAGTTGCTTATAA
AATCGTCGATGGAATACCAATAATTATAGCCCGAGAAGATACATGTTTTG
ATATGGCAAATTCTTTCCCATTTCGTATTTTGAAAAATGGTGAATTTAAG
CATCCTTTCTGATATTTGAAATTTGTAAAAATTAAAAACAATAAATCAAA
TATTTAGCTGAATAATAATTTATTTAATTTTAAATAGTTTCCAAGCTAAT
AAGCAAAAAAATTAATCCTTAAATCTTTATCTCTCAAATTAAATATATTT
ATTGTTTCACTATTTTATGCGCTGGAAATAAATCTGTAAATTGTTGATTT
ATAAATATTGCATAATTGTGATTGTTTTCTATTTGGTGTTGATAAAATGA
TTTGTTATTTCTATGTTGATTTATTCTCATTTGTGACTTGAAAATATTCG
ATTGGTTGAGCTTTGTGAATACTGAAAGATTTTTGTAGTGTTTTTCTGAG
TTTTCTGATATTTTCTTATGATGTTGAGAAATTGCAGAAATTTGTTTGCG
TTTGTTTACAGTTGACATAAAGTGTAGCAATTTTTGGGTTATTTTTTAGT
ATTTTAG
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
Vocabulary: molecular function
TermDefinition
GO:0016301kinase activity
Vocabulary: biological process
TermDefinition
GO:0016310phosphorylation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 27..77
e-value: 5.3E-12
score: 47.4
NoneNo IPR availableSUPERFAMILYSSF158997Trm112p-likecoord: 21..73