SMED30003661

Overview
NameSMED30003661
Smed IDSMED30003661
Length (bp)1662
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30003661 (SMED30003661) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30003661 (SMED30003661) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30003661 (SMED30003661) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30003661 (SMED30003661) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30003661

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30003661SMESG000025366.1 SMESG000025363.1 SMESG000025362.1 dd_Smed_v4_9269_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30003661 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000291:9453..11112 -8085
v31.000291:26261..27914 -7766
Homology
BLAST of SMED30003661 vs. Planmine SMEST
Match: SMESG000025366.1 (SMESG000025366.1)

HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 469/495 (94.75%), Postives = 478/495 (96.57%), Query Frame = 1
Query:  145 MSDQVSRDILFKQELSVKLAYSLCSILFSIGVLADYSYYVLRVIEYGNYKDSIQRGFSYVILGXXXXXXXXXXXXTNLNYKYRNFRYISPIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKTDEMXXXXXXXXXXXXNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRXXXXXXXXXXXXYLIFTVACKTLEVLQRFNQNILILITTMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTSERNTRSIYVIYNSLILLENFLKSILLSLSLNRVPKKFKRKSWNAYLGSPFILMFSYIGIFCHQLISLPYPVNNTYQNKXXXXGIIHIGKPLAFLFDWMTILLFSSILIKFA 1629
            MSDQVSRDILFKQELSVKL +SLCSILFSIGVLADYSYYVLRVIEYGNYKD IQRGFSYV LG+IVINIVIIIIN NLNYKYRNFRY  PIQRPLILYLIYF LIIFSI GL S FIKLLLK +++TDEMVFSIIFGVFVVSNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYS++YKLSNCFISSINHHFNASF SKNGENSE+LFD EY ETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACKTLEVLQ FNQNILILITTMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGL+VIMDIVVDVFML TG DLKTSERNTRSIYVIYNSLILLENFLKSILLSLSLNRVPKKFKRKSWNAYLGSPFILMFSYIGIFCHQLISLPYPVNNTYQNKLLLLGIIHIGKPLAFLFDWMTILLFSSILIKFA
Sbjct:    1 MSDQVSRDILFKQELSVKLTFSLCSILFSIGVLADYSYYVLRVIEYGNYKDRIQRGFSYVNLGMIVINIVIIIINKNLNYKYRNFRYRFPIQRPLILYLIYFLLIIFSIFGLTSYFIKLLLKHSNETDEMVFSIIFGVFVVSNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSFIYKLSNCFISSINHHFNASFFSKNGENSEFLFDPEYRETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACKTLEVLQTFNQNILILITTMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLSVIMDIVVDVFMLSTGLDLKTSERNTRSIYVIYNSLILLENFLKSILLSLSLNRVPKKFKRKSWNAYLGSPFILMFSYIGIFCHQLISLPYPVNNTYQNKLLLLGIIHIGKPLAFLFDWMTILLFSSILIKFA 495          
BLAST of SMED30003661 vs. Planmine SMEST
Match: SMESG000025363.1 (SMESG000025363.1)

HSP 1 Score: 629.787 bits (1623), Expect = 0.000e+0
Identity = 407/425 (95.76%), Postives = 415/425 (97.65%), Query Frame = 1
Query:  145 MSDQVSRDILFKQELSVKLAYSLCSILFSIGVLADYSYYVLRVIEYGNYKDSIQRGFSYVILGXXXXXXXXXXXXTNLNYKYRNFRYISPIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKTDEMXXXXXXXXXXXXNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRXXXXXXXXXXXXYLIFTVACKTLEVLQRFNQNILILITTMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTSERNTRSIYVIYNSLILLENFLKSILLSLSLNRVPKKFKRKS 1419
            MSD+VSRDILFKQELSVKL +SLCSILFSIGVLADYSYYVLRVIEYGNYKD IQRGFSYV+LGI+VINIVIIIINTNLNYKYRNFRY  PIQRPLILYLIYFPLIIFSIIGLISLFIKLLLKLNDKTDEMVFSIIFGVFVVSNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACKTLEVLQRFNQNILILIT MKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKT+ERNTRSIYVIYNSLILLENFLKSILLSLSLNR   +F+ + 
Sbjct:    1 MSDKVSRDILFKQELSVKLTFSLCSILFSIGVLADYSYYVLRVIEYGNYKDRIQRGFSYVMLGIVVINIVIIIINTNLNYKYRNFRYRFPIQRPLILYLIYFPLIIFSIIGLISLFIKLLLKLNDKTDEMVFSIIFGVFVVSNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACKTLEVLQRFNQNILILITIMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTTERNTRSIYVIYNSLILLENFLKSILLSLSLNRFGDEFENEE 425          
BLAST of SMED30003661 vs. Planmine SMEST
Match: SMESG000025362.1 (SMESG000025362.1)

HSP 1 Score: 625.55 bits (1612), Expect = 0.000e+0
Identity = 409/435 (94.02%), Postives = 417/435 (95.86%), Query Frame = 1
Query:  145 MSDQVSRDILFKQELSVKLAYSLCSILFSIGVLADYSYYVLRVIEYGNYKDSIQRGFSYVILGXXXXXXXXXXXXTNLNYKYRNFRYISPIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKTDEMXXXXXXXXXXXXNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRXXXXXXXXXXXXYLIFTVACKTLEVLQRFNQNILILITTMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTSERNTRSIYVIYNSLILLENFLKSILLSLSLNRVPKKF---------KRKSW 1422
            MSD+VSRDILFKQELSVKL +SLCSILFSIGVLADYSYYVLRVIEYGNYKD IQRGFSYV+LGI+VINIVIIIINTNLNYKYRNFRY  PIQRPLILYLIYFPLIIFSIIGLISLFIKLLLKLNDKTDEMVFSIIFGVFVVSNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACKTLEVLQRFNQNILILIT MKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKT+ERNTRSIYVIYNSLILLENFLKSILLSLSLNR  K +         K++ W
Sbjct:    1 MSDKVSRDILFKQELSVKLTFSLCSILFSIGVLADYSYYVLRVIEYGNYKDRIQRGFSYVMLGIVVINIVIIIINTNLNYKYRNFRYRFPIQRPLILYLIYFPLIIFSIIGLISLFIKLLLKLNDKTDEMVFSIIFGVFVVSNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACKTLEVLQRFNQNILILITIMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTTERNTRSIYVIYNSLILLENFLKSILLSLSLNRKKKDYFGLRYSEKDKQRQW 435          
BLAST of SMED30003661 vs. Planmine SMEST
Match: SMESG000025344.1 (SMESG000025344.1)

HSP 1 Score: 102.834 bits (255), Expect = 5.095e-23
Identity = 122/481 (25.36%), Postives = 248/481 (51.56%), Query Frame = 1
Query:  178 KQELSVKLAYSLCSILFSIGVLADYSYYVLRVIEYGNYKDSIQRGFSYVILGXXXXXXXXXXXXTNLNYKYRNFRYISPIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKTDEMXXXXXXXXXXXXNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGN----QRXXXXXXXXXXXXYLIFTVACKTLEVLQRFNQNILILITTMKVLPIVVTI-------LFIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFT-GPDLKTSERNTRSIYVIYNSLI-LLENFLKSILLSLSLNRVPKKFKRKSWNAYLGSPFILMFSYIGIFCHQLISLPYPVNNTYQNKXXXXGIIHIGKPLAFLF 1581
            ++E+ +K   S+   LF +  + +Y +YV ++   G+ KD      +Y I  + +++I++I  NT +N+++RN R    +++PLI YLI  P++  S++GL  +      + +  +  +++  +        ++LV+DI G  DTGE WF+N+FN +TI++++    ++   + +  L++ F +++N     +F+S    ++  +FD    +T         + ++I +  +FI +LVIPL  N+ +L R        E++P+        +++S +G    G +L F V    L V+Q   Q    +I   +++ ++V+        + I E++I +  +    +++K+ +IYLG FG     I +IVV+++ L T G  L  S   T+ I ++ ++ + L+E  L + L+   L+     F + SW+ +  SP  ++   IG+F   L    Y   N++Q +++ +G ++   PL  L+
Sbjct:   11 RKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPMLFISLMGLFVIIFHYTFEKSGTSTNILYFALVIFEYFLFIILVIDINGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNR---TTFVSLFSNHNFTIFD----KTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKP----KEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQNVPQ----VIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFES---TKDILILTSNFVYLIETILMTTLMLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYDEQNSFQIRMMEIGTMYFAIPLVILY 473          
BLAST of SMED30003661 vs. Planmine SMEST
Match: SMESG000025369.1 (SMESG000025369.1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.558e-18
Identity = 123/506 (24.31%), Postives = 257/506 (50.79%), Query Frame = 1
Query:  124 RIFEKISMSDQVSRDILFKQELSVKLAYSLCSILFSIGVLADYSYYVLRVIEYGNYKDSIQRGFSYVILGXXXXXXXXXXXXTNLNYKYRNFRYISPIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XNDKTDEMXXXXXXXXXXXXNLVLVLDITGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHHFNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVIPLINNMKNLKRNISLKIFNENIPDQGNQRXXXXXXXXXXXXYLIFTVACKTLEVLQR--------FNQNILILITTMKVLPIVVTIL-FIKEMRIWSLDSEVSQVSLKSFIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTSERNTRSIYVIYNSLILLENFLKSILLSLSLNRVPKKFKRKSWNAYLGSPFILMFSYIGIFCHQLISLPYPVNNTYQNKXXXXGIIHIGKPLAFLFDWMTILLFSS 1611
            R   + S+  Q +R+ + K  +S+KL      ++FSI  L +YS +++R     +    I +  +  ++ + + NI++II N  +NY++RN R  +P++RP+ILYLI  PL++ SII +    +   LK L+D  D  V      + +++ ++ +LDI+G ++TGE W +++ NF  I+++I    +E+  +  +K+S+ + + I  +FN SF  +N  +  +L     T +A++      E+S+I+++ +   YL++ L  +MKN+ +++S      N P   + R  +   +    + ++F++    L +             + I      +K + +V+ I+  I E+R+W    E     LK   IY GTFG  +  ++ +  ++F + +    + +  +    Y+I +   +++  L S L+ L L++ PK F + SW+    SP +L+ + +       + +  P    ++  L+L+G     +P+   ++   +++ +S
Sbjct:   31 RTMPQDSIVTQSNRNAVIKFMISIKL------LIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYLICLPLLVISIISISLSALNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNFCIIIITICTIFMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFL-----TSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVS----KGNNPQTLSVRNLTFLSLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWIYRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIFQIVSQSVFENTTLSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIILAS 521          
The following BLAST results are available for this feature:
BLAST of SMED30003661 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30003661 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000025366.10.000e+094.75SMESG000025366.1[more]
SMESG000025363.10.000e+095.76SMESG000025363.1[more]
SMESG000025362.10.000e+094.02SMESG000025362.1[more]
SMESG000025344.15.095e-2325.36SMESG000025344.1[more]
SMESG000025369.12.558e-1824.31SMESG000025369.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003661 ID=SMED30003661|Name=SMED30003661|organism=Schmidtea mediterranea sexual|type=transcript|length=1662bp
TATATGAATTGCGAAAATTTATTAAAGCTGGACTGAAATATCGCAGTTTC
AATACCGAATATATTAAACGTCCGTTTTCGATGACAGGAAACTTTCACTA
TTTTTAGAAATGTAAAAAATTACAGAATATTTGAAAAGATTTCAATGAGC
GACCAAGTTTCAAGAGATATTTTATTCAAGCAAGAGCTGTCTGTGAAATT
AGCATACAGTTTGTGCTCAATTCTGTTTTCCATAGGGGTCCTTGCGGACT
ATTCCTACTATGTGCTCAGGGTCATTGAATATGGCAACTATAAGGATAGC
ATTCAAAGGGGGTTCAGCTATGTGATATTGGGAATAATTGTTATCAATAT
TGTCATAATTATCATTAACACGAATCTCAACTACAAATATCGGAATTTCA
GATACATATCCCCGATTCAAAGGCCTTTGATCCTCTATTTGATATATTTT
CCTTTAATAATATTTTCGATAATCGGACTCATCTCACTTTTCATTAAATT
GCTTTTAAAACTCAACGATAAGACGGATGAAATGGTATTCTCTATTATTT
TTGGAGTATTCGTGGTGTCCAATTTGGTGTTAGTGTTGGACATAACCGGT
ACCAAGGACACTGGGGAATTGTGGTTTTTAAACTTTTTCAATTTTCTTAC
GATTCTTGTCAGCATTATTCTTTTCTCTTTGGAGTCATCTTACAGTTATG
TATACAAATTATCCAATTGTTTTATTTCTTCAATCAATCACCATTTTAAC
GCCTCCTTTCTTTCTAAAAATGGTGAAAATTCTGAATATCTATTCGATCT
GGAATACACAGAAACTGCTCTAGATTGGTTTGCGGATGCCCTGGAGAACT
CCTTGATTATAATTGTTTTCATTTTCATTTCTTATTTGGTAATTCCTCTC
ATAAATAACATGAAAAATCTGAAGAGAAATATTTCATTGAAGATCTTCAA
TGAAAATATCCCTGACCAAGGTAATCAGAGAATAACATCGACTTCTGGAA
TAATAATATCTGGATCGTATTTGATATTTACGGTTGCCTGTAAAACACTT
GAAGTCTTACAAAGATTTAATCAAAATATTTTAATACTCATAACGACAAT
GAAGGTTTTACCAATTGTTGTTACGATTTTATTTATTAAAGAAATGAGGA
TTTGGAGTCTTGATTCGGAGGTTTCCCAAGTAAGTCTGAAAAGTTTTATA
ATTTATTTAGGAACTTTCGGTTACGGTTTAACAGTTATAATGGACATAGT
AGTTGATGTTTTCATGTTATTCACTGGACCCGATTTGAAGACGTCAGAAA
GAAATACTCGCTCCATTTATGTCATTTATAATTCTCTGATTTTACTGGAG
AATTTTCTGAAATCTATTTTGTTGTCACTTTCATTGAATAGAGTACCAAA
AAAGTTCAAAAGGAAGTCTTGGAATGCGTATTTAGGGTCACCTTTTATTT
TGATGTTTAGCTATATTGGCATATTTTGCCATCAGCTCATTTCTCTCCCC
TACCCCGTCAACAATACTTACCAGAACAAACTGCTTCTCTTGGGAATCAT
TCATATTGGCAAGCCACTGGCATTTTTATTCGACTGGATGACAATTTTAC
TATTTAGTTCAATTTTAATAAAATTTGCGTAGAAATAAAATATATATTTT
CTGCTAAAAAAA
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protein sequence of SMED30003661-orf-1

>SMED30003661-orf-1 ID=SMED30003661-orf-1|Name=SMED30003661-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=496bp
MSDQVSRDILFKQELSVKLAYSLCSILFSIGVLADYSYYVLRVIEYGNYK
DSIQRGFSYVILGIIVINIVIIIINTNLNYKYRNFRYISPIQRPLILYLI
YFPLIIFSIIGLISLFIKLLLKLNDKTDEMVFSIIFGVFVVSNLVLVLDI
TGTKDTGELWFLNFFNFLTILVSIILFSLESSYSYVYKLSNCFISSINHH
FNASFLSKNGENSEYLFDLEYTETALDWFADALENSLIIIVFIFISYLVI
PLINNMKNLKRNISLKIFNENIPDQGNQRITSTSGIIISGSYLIFTVACK
TLEVLQRFNQNILILITTMKVLPIVVTILFIKEMRIWSLDSEVSQVSLKS
FIIYLGTFGYGLTVIMDIVVDVFMLFTGPDLKTSERNTRSIYVIYNSLIL
LENFLKSILLSLSLNRVPKKFKRKSWNAYLGSPFILMFSYIGIFCHQLIS
LPYPVNNTYQNKLLLLGIIHIGKPLAFLFDWMTILLFSSILIKFA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 280..297
NoneNo IPR availableTMHMMTMhelixcoord: 393..415
NoneNo IPR availableTMHMMTMhelixcoord: 19..41
NoneNo IPR availableTMHMMTMhelixcoord: 351..373
NoneNo IPR availableTMHMMTMhelixcoord: 130..152
NoneNo IPR availableTMHMMTMhelixcoord: 312..331
NoneNo IPR availableTMHMMTMhelixcoord: 237..259
NoneNo IPR availableTMHMMTMhelixcoord: 56..78
NoneNo IPR availableTMHMMTMhelixcoord: 428..450
NoneNo IPR availableTMHMMTMhelixcoord: 159..181
NoneNo IPR availableTMHMMTMhelixcoord: 95..117
NoneNo IPR availableTMHMMTMhelixcoord: 465..487