transverse filament protein SYCP-1

Overview
Nametransverse filament protein SYCP-1 (AIW60887.1)
Smed IDSMED30003599
Length (bp)3874
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of transverse filament protein SYCP-1 (SMED30003599) t-SNE clustered cells

Violin plots show distribution of expression levels for transverse filament protein SYCP-1 (SMED30003599) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of transverse filament protein SYCP-1 (SMED30003599) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for transverse filament protein SYCP-1 (SMED30003599) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30003599

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
epidermal progenitor cellSMED30003599h1SMcG0012555 SMED30003599smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
X1 cellSMED30003599h1SMcG0012555 SmedASXL_005299SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30003599h1SMcG0012555 SmedASXL_010083SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30003599h1SMcG0012555 SmedASXL_000822SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30003599h1SMcG0012555 dd_Smed_v4_18547_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30003599h1SMcG0012555 Contig20683newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30003599h1SMcG0012555 Contig20683uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
zeta neoblastSMED30003599h1SMcG0012555 dd_Smed_v4_30278_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30003599h1SMcG0012555 dd_Smed_v4_18547_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of transverse filament protein SYCP-1 vs. Ensembl Zebrafish
Match: sycp1 (synaptonemal complex protein 1 [Source:ZFIN;Acc:ZDB-GENE-040910-6])

HSP 1 Score: 51.6026 bits (122), Expect = 9.120e-7
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  865 IPKESENSQIKV--LHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIE-NIEKIN 1179
            +P E E + ++   L+ KL  EAEKI+ WK   +  +S K++K++E+ K IE+ R +  + Q   E++S+  + +L+   ++  K   +RNLC ILK   E   EK+N
Sbjct:   48 LPMEKEETSLRSSQLYSKLLDEAEKIKLWKFRTDSDISQKDRKIQENRKTIETQRKAIQELQFANESLSIKLEDQLNENEDLRNKTNATRNLCNILKDTFERTAEKMN 155
[Close]
BLAST of transverse filament protein SYCP-1 vs. Ensembl Xenopus
Match: wdcp (WD repeat and coiled coil containing [Source:Xenbase;Acc:XB-GENE-5729803])

HSP 1 Score: 60.077 bits (144), Expect = 3.189e-8
Identity = 104/550 (18.91%), Postives = 232/550 (42.18%), Query Frame = 1 
Query:  760 EEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKI---NQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFK-TNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTXXXXXXXXXXXXXXXXXXXKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNEND 2397
            E A  +  +  ET    K+ + + +   NE     IP ++ +   + L  +  I++   +  +++L  Q ++ + +LK +E ++   R   L  +  ++N  LN        +EV +K+        + ++K++++  +    +  IK + +L T+  K +T  +  +E  K  +E  L   D+I  +V   N   +I+N+ +SD+ K         N ++                    N+T+E A  +   + LQ + +    +D    L+    L E  N +  + +       +N+K+++   E++  + K   +  I+ +  K   T I + +N       N  ++  +   +EN  E+  + +Q  +++ G L     +    I   ++  K  N+  +D+   +  L L       N L LK + T L+E+    + + N    +  EN   I + +  +K L+ +   L D ++ + E  + +    S I++ + + + +   +++S+    +   + +R    +IK  +   IIL  + D
Sbjct: 1613 ERAKQLEDFVKETLRASKD-IYDKAVKLNET--LGIPNKTLDKSFQEL--QKDIDSMMAELRRKSLRNQKNTADDELKAAEALLN--RVKKLFLEAHKKNEDLN--------NEVKEKL-------GLFEEKLDDVWDLLREARGKIKAADDLSTVNQKNMTELEQGVEKGKKETESVLGDGDSIMTEV---NNLAQIINEDLSDMNKELPPLTEQLNEKI-------------------NNLTQEIARRDLPEQILQAENQAAQLIDSSAVLDGI--LAEAKNLSFNATVAFN--AYSNIKDLIDDAEDTAKEAKAKANEAIDLVRTKKSFTKIHMQQNFIQARY-NENDLAGIKNRLENADEKNQNMLQALNDTFGKLALIPNDTLVKIQTAKDKAKQANDTASDVLERLKDLNL-------NLLGLKQNYTALKED----VAKTNAAVKDPVEN---ITDADGRVKQLEKEADRLLDKLKPIKELQENLGKNISQIKELINQARKQANSIKVSV----SSGGDCIRTYKPDIKKGRFNTIILNVKTD 2095
[Close]
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A0A0V1J1 (Transverse filament protein SYCP-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 1742.63 bits (4512), Expect = 0.000e+0
Identity = 1043/1057 (98.68%), Postives = 1048/1057 (99.15%), Query Frame = 1 
Query:  604 ITFSPKKVSGNSIVNNQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHNYEEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTXXXXXXXXXXXXXXXXXXXKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCXXXXXXXXXXXXXXXXXXXXXXXSLTLDSQNVSNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDXXXXXXXXXXXXXXXXXXXINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLEA 3774
            + FSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYN+LSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHES+ITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNL+SDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENK QIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNV+NKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQL SLATPKSQKLSTKLENFNELTNICSN      TSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA
Sbjct:  183 LQFSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYNDLSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESEITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLRSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKIQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNVTNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLASLATPKSQKLSTKLENFNELTNICSN------TSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA 1233

HSP 2 Score: 345.895 bits (886), Expect = 7.506e-96
Identity = 183/190 (96.32%), Postives = 183/190 (96.32%), Query Frame = 2 
Query:   59 MKTSFLKGFFNSKDNSKSNYSIHNXXXXXXXXXXXXHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCPQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRNLEQIQCLKDNKIKKSPVPWRLHFHQKKF 628
            MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNC QFTAPSPLSLLKTPTKEIKLNQ DTNYKNCLIKGLGSPTILSKGFINRN EQIQCLKDNKIKKSPVPWRL F  KK 
Sbjct:    1 MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCLQFTAPSPLSLLKTPTKEIKLNQLDTNYKNCLIKGLGSPTILSKGFINRNHEQIQCLKDNKIKKSPVPWRLQFSPKKV 190
[Close]
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A4S2L919 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009393 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.688e-16
Identity = 69/209 (33.01%), Postives = 101/209 (48.33%), Query Frame = 1 
Query: 3163 ISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDE--NDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTP---KKPSLVCK-LNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLE 3771
            I++L   E ++   + +L  NSPP  TQ+P  I  T   TPKS  LS +L          +++TI K T QKT + IL+QPGSA KRR+VLF +  +D +   + ++D DS   DG+                       +++ AT P   K P +  K +   +  +N R T  +K P+   SK      K   NWF+S+  FG GLE
Sbjct:  355 IARLQKTESEFKEFQRQLYMNSPPASTQLPPDISATVTQTPKSPALSLRL----------NSMTIMK-TPQKTPRSILKQPGSACKRRRVLFAQPSDDKISNTVSVTDIDS--DDGL--------------------LSQDLLEATPPCPNKTPDIRSKSIQSLERTSNIRKTPCKKGPTFSESKSKASSVKTSVNWFESEQLFGMGLE 530
[Close]
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A4Z2CM83 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_009607 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.915e-16
Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 1 
Query: 3142 IAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXE-NWFDSDNFFGFGLE 3771
            +AE    + KL  IE +Y   K ++ +NSPPV TQ+P  I      TPKS  LS KL + N +           +T  KT KGIL+QPGSA+KRR+V F   D  ++K +              D + + C N+        Y+  +   T+   P +     + + +   ++TN+RKTP K   K+++ RK+D E +WFD +  FG+G E
Sbjct:  941 LAENSRELLKLRSIEKEYQEFKHQIYANSPPVSTQLPREIHEKVTQTPKSPMLSLKLSDLNMI-----------ETPTKTPKGILKQPGSATKRRRVFFAYPD-YESKTN--------------DQKEMTCQNQ-------GYESPMFKKTS---PYITNTPEIHNLQTLEKVTNIRKTPRKTGRKITEYRKEDTEKSWFDCEQIFGYGAE 1115
[Close]
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A419PPG9 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_5188s PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.399e-15
Identity = 69/209 (33.01%), Postives = 101/209 (48.33%), Query Frame = 1 
Query: 3163 ISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDE--NDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTP---KKPSLVCK-LNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLE 3771
            I++L   E ++   + +L  NSPP  TQ+P  I  T   TPKS  LS +L          +++TI K T QKT + IL+QPGSA KRR+VLF +  ++ +   + ++D DS   DG+                       +++ AT P   K P +  K +   +  +N R T  +K P+   SK      K   NWF+SD  FG GLE
Sbjct:  736 IARLQKTESEFKEFQRQLYMNSPPASTQLPPDISATVTQTPKSPALSLRL----------NSMTIMK-TPQKTPRSILKQPGSACKRRRVLFAQPSDNKISNTVSVTDIDS--DDGL--------------------LSQDLLEATPPCPNKTPDIRSKSIQSLERTSNIRKTPCKKGPTFSESKSKSSSVKTSVNWFESDQLFGMGLE 911
[Close]
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A068WL25 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_001116500 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.153e-14
Identity = 71/254 (27.95%), Postives = 110/254 (43.31%), Query Frame = 1 
Query: 3085 NLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIID-NYKHNIIVA------TTPKKPSL----------VCKLNLTDSKNNGRLTNVR--------KTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLE 3771
            NL A+    +N+ A +   ++ KD+ I +L  IE ++ + K  +++NSPP  TQIP+ I++    TP+S  LS KL           N  +  +T QKT K IL+QPGS  KRR+VL            IS   S    G       ++   +     +D N +  ++VA        P+ P++          + K   + S+  G  TN R        K P+  ++           +WFDSD  FG   E
Sbjct:  947 NLDAELTNLNNEKAKLTAALSTKDAEIERLRYIEAEFADFKRSIMNNSPPCSTQIPKSIEIEVQKTPRSPLLSEKL-----------NRMVLLKTPQKTPKSILKQPGSECKRRRVLL-----------ISPEKSTPKSGCFEVEPELEVELQAGSKTVDTNSETCLVVAQPCFKPAPPRTPNIRGTPQTRNANIRKTPSSGSRGRGPPTNTRSSMRLGSAKGPTATTNAAHVTTSVAASSWFDSDETFGLNTE 1178

HSP 2 Score: 68.9366 bits (167), Expect = 9.107e-8
Identity = 79/327 (24.16%), Postives = 148/327 (45.26%), Query Frame = 1 
Query:  760 EEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKK-------------IENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQ----KRHESKITN---FNNELESNRNELIITKQKLDVLIEENIT--KENALIEQ------KNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLK 1656
            EE N  S Y   +  E+ N   +++ +  +    E        ++ +LH+KLK EA K++ WK  +  +L+   +KL E+  ++ SLR SNL+ QM +EN SL  + E++ R  + KK             I  +R+LC+ +K +IE ++                                C S MQ  F    +QKV        +L ++  D Q    +  ES+  N    N +   ++N L     +L  ++E+ ++  +E +LI +      KN+ L+++  +E+       +++ +++G +  + L+ +IE  N E+ N+K
Sbjct:  218 EEGNQDSNYQCRSMGEMNNVQRQSAHEEGQCREVEACDSDGYDKLAILHVKLKNEAVKLENWKNEMIAKLNKNEEKLAEANTLVASLRKSNLELQMDRENASLKVKDEVEKREAIEKKWFIYCNLMYLCHRIIGTRDLCEAIKTQIEFVQST------------------------------CTSTMQTCFKTATTQKVLE-----ALLENTFKDFQNLSIQLDESRAKNRKQLNEKHNHDKNTLSTRNSELTAVLEKLVSEREEISLISKKCAETLKNQILKIRTTLES-------MDLFLEVGSQMKFGLEKEIESVNIELLNVK 502
[Close]
BLAST of transverse filament protein SYCP-1 vs. Planmine SMEST
Match: SMESG000073774.1 (SMESG000073774.1)

HSP 1 Score: 1730.3 bits (4480), Expect = 0.000e+0
Identity = 1035/1057 (97.92%), Postives = 1041/1057 (98.49%), Query Frame = 1 
Query:  604 ITFSPKKVSGNSIVNNQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHNYEEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTXXXXXXXXXXXXXXXXXXXKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCXXXXXXXXXXXXXXXXXXXXXXXSLTLDSQNVSNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDXXXXXXXXXXXXXXXXXXXINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLEA 3774
            + FSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYN+LSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHES+ITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNL+SDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENK QIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNV+NKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQL SLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKE             +ATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA
Sbjct:  183 LQFSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYNDLSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESEITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLRSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKIQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNVTNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLASLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKE-------------IATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA 1226

HSP 2 Score: 347.436 bits (890), Expect = 4.398e-100
Identity = 184/190 (96.84%), Postives = 184/190 (96.84%), Query Frame = 2 
Query:   59 MKTSFLKGFFNSKDNSKSNYSIHNXXXXXXXXXXXXHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCPQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRNLEQIQCLKDNKIKKSPVPWRLHFHQKKF 628
            MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNC QFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRN EQIQCLKDNKIKKSPVPWRL F  KK 
Sbjct:    1 MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCLQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRNHEQIQCLKDNKIKKSPVPWRLQFSPKKV 190
The following BLAST results are available for this feature:
BLAST of transverse filament protein SYCP-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sycp19.120e-734.26synaptonemal complex protein 1 [Source:ZFIN;Acc:ZD... [more]
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
wdcp3.189e-818.91WD repeat and coiled coil containing [Source:Xenba... [more]
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0A0V1J17.506e-9698.68Transverse filament protein SYCP-1 OS=Schmidtea me... [more]
A0A4S2L9191.688e-1633.01Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4Z2CM833.915e-1633.18Uncharacterized protein OS=Schistosoma japonicum O... [more]
A0A419PPG91.399e-1533.01Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
A0A068WL251.153e-1427.95Uncharacterized protein OS=Echinococcus granulosus... [more]
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transverse filament protein SYCP-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000073774.14.398e-10097.92SMESG000073774.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30003599
GenBankAIW60887.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003599 ID=SMED30003599|Name=transverse filament protein SYCP-1|organism=Schmidtea mediterranea sexual|type=transcript|length=3874bp
ACAAGTTTGCGGATATCGCATTTTATATTGAAATCTCTAATACTTAATTT
TGTTTTGAATGAAAACGTCATTTTTAAAAGGATTTTTTAATTCAAAAGAT
AATTCTAAAAGTAATTATAGTATTCATAATGTTGACTTAGACGATTCTGA
TGATGCTGTATTAAGTCATGAGAACTTTTTCCAGAAAAATAATTCTCCCA
AGGAACATGATATAAAAAGTAATAAGAGTGATGATATTTTCCATAAAAAA
TTCAATATTTATTCTTTGAATGAATCAATATCAAGTATTAATAGTGACAT
AAAATCTCCAATTTCAAATGAATTTAATTTTTCCAAAAATAAAAATCTTT
ATTCACATAATGAACATGAAAATATGTCCAAAACTAAGAATTGTCCACAA
TTTACAGCTCCAAGTCCTTTAAGTCTTTTAAAAACACCAACTAAGGAAAT
CAAGCTAAATCAGTTTGATACGAACTATAAAAATTGCTTGATTAAAGGAT
TAGGCTCACCGACTATTTTATCGAAAGGATTTATTAATAGAAATCTTGAA
CAAATTCAGTGTTTAAAGGATAATAAAATTAAGAAAAGTCCAGTTCCTTG
GAGATTACATTTTCACCAAAAAAAGTTTCGGGAAATAGTATTGTGAACAA
CCAATTCGAAAATAATATTAAAAATGACCTAATTGATATTAATGAAGATT
TAAATGATAAAAATAATAATTTTGAAAAGTTTAATGAGACAACAAATCAT
CACAATTATGAAGAAGCTAATGATATTTCTAAATACACAAATGAAACTTT
CGAAGAAATTAAAAATGCTTTAGTAGAAAATTCAACTGACTATAATGAGT
TATCATTCTGTGAAATTCCAAAAGAATCTGAAAATTCACAAATCAAAGTT
TTACACATAAAACTTAAAATAGAAGCAGAAAAAATTCAAAAATGGAAAGA
AAATTTGGAAAAGCAACTATCTTCAAAAAATCAAAAATTAAAAGAATCTG
AGAAAATTATTGAAAGTTTAAGAGCATCAAATTTAGACTTTCAAATGCAG
CAAGAAAATATTAGTTTAAACTATCAAATGGAATTGGATTGTCGTTCCGA
AGTCTCTAAAAAAATCGAAAATTCCCGTAATCTATGCCAAATTCTTAAAC
AAAAAATTGAAAATATAGAGAAAATAAATCAAAATCATATTAAAGAATCA
ACCAATTTAAAAACCATTCAAAATAAAACTTTGACAATTACGGACAATAT
TTTAGAAGACATAAAATGTTATTCAGAAATGCAATTAATTTTTGCTGATA
ACATAAGTCAAAAAGTATTTTCAAAAAATGAGGAAATCAAAATTTTAAAT
GATTCGATATCAGATTTACAAAAACGACATGAATCTAAAATAACCAACTT
CAATAATGAGTTAGAAAGTAATCGAAATGAATTGATAATTACAAAACAAA
AACTCGACGTTTTAATTGAAGAAAATATCACGAAAGAAAATGCATTGATT
GAGCAGAAAAATAAAAGTCTTCAATTGCAAAAAGAAATAGAAAATCGTTT
AGATGACATTTTAAAGTTAGAGATATCTATTAAACTCGGCGAAGAAAACA
ATTACAATTTGCAATCAGATATTGAAATAAAAAACAGGGAAGTTACTAAT
TTAAAAGAAATGCTAACTTTAATGGAAGAATCACATTTAAAAGTCAAAGA
ATCTATGTCATTAGAAATTGAGTCAATTAACGTTAAATTTAAGACAAATA
TTGAATTAAATGAAAACTTAAAAGCCATTAATTTGAAAAATTCAGAAGAA
ATTGAATCTTTAAATCTTATGATTGAAAATTTAAAAGAAGAATTTTGTTC
TAAAATGCAAATTAAAGATAATTCTATTGGAAATTTAACAAATTCTATAA
TTGAAAAAGAAAATAATATATCAAATTTAGAAAATTTGATTAAATCAAAA
AATGAACGTTTAAATGATTTGGAAAGTGAAATAACTAAATTGAAATTAGA
AAATGAAACAATTTCAAAAAATAATTTGATTTTGAAATCCAGTAATACAG
ATCTCAGGGAAGAAACTGAAAGTCAAATACTTGAAATTAATAAGTTATCC
AATAATTTAACGGAGAATAAATTTCAAATAGAAAACCTAAATGACATTAT
CAAGAATCTTGATAGTCAAAATGGAAATTTAAAAGATTCAATACAAAAAT
TGATTGAGGAAAATCAAACAATAAACAATGAATATAGTACGATTCAAAAA
AATTTAATTGAAATTCAAAATAAAAATGAGGAACTTGAAATTTCAATTAT
TAACTCGAACGCACAAGAAAATAATATTGTTCGCGAACAAAATTCAAATA
TTAAAGATTTACAAGAAAAACTAATAATTTTACAAAATGAAAATGACGAA
ATGAAACTGAGAATTGAATATGTTGAAAAGGAAAAGGAAAATTCTAGGAA
TTTTTTATCCTCGTTGTCAGATGAAAATAATGTATTATCCAAAACTGTTG
AGGAATTTAAAGCTCTATTGGTTTCACAAGACAAAGATTTACAAATAGCA
ATTTCTCAAAAAAATGAATTGGTTAAAAATCAAAAAATTGCCGAAGATAA
AATTAAAAATTTTGAAAAACATACTTTTGAATTTGAGAATATAGTTTCTG
AAAATAAATTTAAAATAACTTCTTTAGAGACTTTTGTTGACGATTTATCA
AAAGAAAAACATAATATTTTAAAGTCTCGAGAAGATTTACGGAAAGAATT
AATGTTCACTTTAGAACAATGCAAGAATGAACATGAAATTGTTGAAAAAA
AGAAAAATAAGGAAATTGAAAACCTTAAAAATTTGGTGAATTCCTTGACA
TTAGATTCACAGAATGTTTCTAATAAATCTAAAAATAAATTGAGTGAAAT
CACATCTAAATTAAACAATCAAAAAGAAGAAATTGAAAAACTTAAAAGTG
ATTTACAGAAAGCTCGTGTTGAAAAAGATCAAACTAAAAAACTTCTGGAT
AAAGCAAATTTGTCAATAAATGATCTTTCTGAAAAACTTGTCAGTGTGGA
AAATGTAGTTGAAGAACTTGAAAATTCAAAAATAAATTTGAAAGCACAAG
CTGCTAAGGGTGATAATAAAGTTGCAATTATGGCGAAAGAAATTGCTGAA
AAGGATTCAATTATTTCGAAATTGAGTGTGATTGAAATGGATTATACCAA
TCTAAAAAGTAAATTACTCTCAAACTCTCCTCCAGTGTGCACTCAAATTC
CAGAATATATTCAATTAACAAGTCTTGCAACTCCAAAAAGTCAGAAGCTT
TCGACAAAATTAGAAAATTTCAATGAGTTGACAAATATTTGTTCAAATGT
AACTATTTGTAAACAGACATCTCAAAAAACTTCGAAAGGAATTTTACGTC
AACCCGGATCAGCGAGTAAAAGGCGAAAAGTATTGTTCGATGAAAATGAT
TTAGTTCAAACAAAGTTGGATATTTCTGATAATGACTCGGTACATTCGGA
TGGTGTTGATATTGATCTAGAAAATATTGACTGTGTAAACAAAGAAAGTA
TATCCATTATTGATAACTATAAACACAATATTATAGTTGCAACTACCCCC
AAAAAGCCATCTTTGGTGTGCAAATTGAATTTAACCGATTCAAAAAATAA
TGGAAGATTAACCAATGTAAGAAAAACACCTTCCAAGGTTTCTTCAAAAT
TAAGTGATAAACGAAAGAAAGATAAGGAAAATTGGTTTGATTCTGATAAC
TTTTTTGGGTTCGGCTTAGAAGCTTAAAATATGTTATTATTCTATATTAT
TAACTGTTTATCAAATACTTTTTTAAATTTTATTGTGTTAAAATTTTGTT
CAAGTTTTTAAGTTTAATAACCGA
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protein sequence of SMED30003599-orf-1

>SMED30003599-orf-1 ID=SMED30003599-orf-1|Name=SMED30003599-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=911bp
MQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIK
ESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKI
LNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENA
LIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREV
TNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNS
EEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIK
SKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINK
LSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTI
QKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNEN
DEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQ
IAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDD
LSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNS
LTLDSQNVSNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKL
LDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEI
AEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQ
KLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDE
NDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVAT
TPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDS
DNFFGFGLEA*
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protein sequence of SMED30003599-orf-2

>SMED30003599-orf-2 ID=SMED30003599-orf-2|Name=SMED30003599-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=196bp
MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEH
DIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSH
NEHENMSKTKNCPQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGS
PTILSKGFINRNLEQIQCLKDNKIKKSPVPWRLHFHQKKFREIVL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000033epidermal progenitor cell
PLANA:0000429neoblast
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR000299FERM_domain
Vocabulary: cellular component
TermDefinition
GO:0005856cytoskeleton
GO:0005634nucleus
Vocabulary: molecular function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated