transverse filament protein SYCP-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30003599 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of transverse filament protein SYCP-1 vs. Ensembl Zebrafish
Match: sycp1 (synaptonemal complex protein 1 [Source:ZFIN;Acc:ZDB-GENE-040910-6]) HSP 1 Score: 51.6026 bits (122), Expect = 9.120e-7 Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 1 Query: 865 IPKESENSQIKV--LHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIE-NIEKIN 1179 +P E E + ++ L+ KL EAEKI+ WK + +S K++K++E+ K IE+ R + + Q E++S+ + +L+ ++ K +RNLC ILK E EK+N Sbjct: 48 LPMEKEETSLRSSQLYSKLLDEAEKIKLWKFRTDSDISQKDRKIQENRKTIETQRKAIQELQFANESLSIKLEDQLNENEDLRNKTNATRNLCNILKDTFERTAEKMN 155
BLAST of transverse filament protein SYCP-1 vs. Ensembl Xenopus
Match: wdcp (WD repeat and coiled coil containing [Source:Xenbase;Acc:XB-GENE-5729803]) HSP 1 Score: 60.077 bits (144), Expect = 3.189e-8 Identity = 104/550 (18.91%), Postives = 232/550 (42.18%), Query Frame = 1 Query: 760 EEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKI---NQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFK-TNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTXXXXXXXXXXXXXXXXXXXKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNEND 2397 E A + + ET K+ + + + NE IP ++ + + L + I++ + +++L Q ++ + +LK +E ++ R L + ++N LN +EV +K+ + ++K++++ + + IK + +L T+ K +T + +E K +E L D+I +V N +I+N+ +SD+ K N ++ N+T+E A + + LQ + + +D L+ L E N + + + +N+K+++ E++ + K + I+ + K T I + +N N ++ + +EN E+ + +Q +++ G L + I ++ K N+ +D+ + L L N L LK + T L+E+ + + N + EN I + + +K L+ + L D ++ + E + + S I++ + + + + +++S+ + + +R +IK + IIL + D Sbjct: 1613 ERAKQLEDFVKETLRASKD-IYDKAVKLNET--LGIPNKTLDKSFQEL--QKDIDSMMAELRRKSLRNQKNTADDELKAAEALLN--RVKKLFLEAHKKNEDLN--------NEVKEKL-------GLFEEKLDDVWDLLREARGKIKAADDLSTVNQKNMTELEQGVEKGKKETESVLGDGDSIMTEV---NNLAQIINEDLSDMNKELPPLTEQLNEKI-------------------NNLTQEIARRDLPEQILQAENQAAQLIDSSAVLDGI--LAEAKNLSFNATVAFN--AYSNIKDLIDDAEDTAKEAKAKANEAIDLVRTKKSFTKIHMQQNFIQARY-NENDLAGIKNRLENADEKNQNMLQALNDTFGKLALIPNDTLVKIQTAKDKAKQANDTASDVLERLKDLNL-------NLLGLKQNYTALKED----VAKTNAAVKDPVEN---ITDADGRVKQLEKEADRLLDKLKPIKELQENLGKNISQIKELINQARKQANSIKVSV----SSGGDCIRTYKPDIKKGRFNTIILNVKTD 2095
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A0A0V1J1 (Transverse filament protein SYCP-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 1742.63 bits (4512), Expect = 0.000e+0 Identity = 1043/1057 (98.68%), Postives = 1048/1057 (99.15%), Query Frame = 1 Query: 604 ITFSPKKVSGNSIVNNQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHNYEEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTXXXXXXXXXXXXXXXXXXXKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCXXXXXXXXXXXXXXXXXXXXXXXSLTLDSQNVSNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDXXXXXXXXXXXXXXXXXXXINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLEA 3774 + FSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYN+LSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHES+ITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNL+SDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENK QIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNV+NKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQL SLATPKSQKLSTKLENFNELTNICSN TSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA Sbjct: 183 LQFSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYNDLSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESEITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLRSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKIQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNVTNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLASLATPKSQKLSTKLENFNELTNICSN------TSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA 1233 HSP 2 Score: 345.895 bits (886), Expect = 7.506e-96 Identity = 183/190 (96.32%), Postives = 183/190 (96.32%), Query Frame = 2 Query: 59 MKTSFLKGFFNSKDNSKSNYSIHNXXXXXXXXXXXXHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCPQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRNLEQIQCLKDNKIKKSPVPWRLHFHQKKF 628 MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNC QFTAPSPLSLLKTPTKEIKLNQ DTNYKNCLIKGLGSPTILSKGFINRN EQIQCLKDNKIKKSPVPWRL F KK Sbjct: 1 MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCLQFTAPSPLSLLKTPTKEIKLNQLDTNYKNCLIKGLGSPTILSKGFINRNHEQIQCLKDNKIKKSPVPWRLQFSPKKV 190
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A4S2L919 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009393 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.688e-16 Identity = 69/209 (33.01%), Postives = 101/209 (48.33%), Query Frame = 1 Query: 3163 ISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDE--NDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTP---KKPSLVCK-LNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLE 3771 I++L E ++ + +L NSPP TQ+P I T TPKS LS +L +++TI K T QKT + IL+QPGSA KRR+VLF + +D + + ++D DS DG+ +++ AT P K P + K + + +N R T +K P+ SK K NWF+S+ FG GLE Sbjct: 355 IARLQKTESEFKEFQRQLYMNSPPASTQLPPDISATVTQTPKSPALSLRL----------NSMTIMK-TPQKTPRSILKQPGSACKRRRVLFAQPSDDKISNTVSVTDIDS--DDGL--------------------LSQDLLEATPPCPNKTPDIRSKSIQSLERTSNIRKTPCKKGPTFSESKSKASSVKTSVNWFESEQLFGMGLE 530
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A4Z2CM83 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_009607 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.915e-16 Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 1 Query: 3142 IAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXE-NWFDSDNFFGFGLE 3771 +AE + KL IE +Y K ++ +NSPPV TQ+P I TPKS LS KL + N + +T KT KGIL+QPGSA+KRR+V F D ++K + D + + C N+ Y+ + T+ P + + + + ++TN+RKTP K K+++ RK+D E +WFD + FG+G E Sbjct: 941 LAENSRELLKLRSIEKEYQEFKHQIYANSPPVSTQLPREIHEKVTQTPKSPMLSLKLSDLNMI-----------ETPTKTPKGILKQPGSATKRRRVFFAYPD-YESKTN--------------DQKEMTCQNQ-------GYESPMFKKTS---PYITNTPEIHNLQTLEKVTNIRKTPRKTGRKITEYRKEDTEKSWFDCEQIFGYGAE 1115
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A419PPG9 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_5188s PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.399e-15 Identity = 69/209 (33.01%), Postives = 101/209 (48.33%), Query Frame = 1 Query: 3163 ISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDE--NDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTP---KKPSLVCK-LNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLE 3771 I++L E ++ + +L NSPP TQ+P I T TPKS LS +L +++TI K T QKT + IL+QPGSA KRR+VLF + ++ + + ++D DS DG+ +++ AT P K P + K + + +N R T +K P+ SK K NWF+SD FG GLE Sbjct: 736 IARLQKTESEFKEFQRQLYMNSPPASTQLPPDISATVTQTPKSPALSLRL----------NSMTIMK-TPQKTPRSILKQPGSACKRRRVLFAQPSDNKISNTVSVTDIDS--DDGL--------------------LSQDLLEATPPCPNKTPDIRSKSIQSLERTSNIRKTPCKKGPTFSESKSKSSSVKTSVNWFESDQLFGMGLE 911
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Match: A0A068WL25 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_001116500 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.153e-14 Identity = 71/254 (27.95%), Postives = 110/254 (43.31%), Query Frame = 1 Query: 3085 NLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIID-NYKHNIIVA------TTPKKPSL----------VCKLNLTDSKNNGRLTNVR--------KTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLE 3771 NL A+ +N+ A + ++ KD+ I +L IE ++ + K +++NSPP TQIP+ I++ TP+S LS KL N + +T QKT K IL+QPGS KRR+VL IS S G ++ + +D N + ++VA P+ P++ + K + S+ G TN R K P+ ++ +WFDSD FG E Sbjct: 947 NLDAELTNLNNEKAKLTAALSTKDAEIERLRYIEAEFADFKRSIMNNSPPCSTQIPKSIEIEVQKTPRSPLLSEKL-----------NRMVLLKTPQKTPKSILKQPGSECKRRRVLL-----------ISPEKSTPKSGCFEVEPELEVELQAGSKTVDTNSETCLVVAQPCFKPAPPRTPNIRGTPQTRNANIRKTPSSGSRGRGPPTNTRSSMRLGSAKGPTATTNAAHVTTSVAASSWFDSDETFGLNTE 1178 HSP 2 Score: 68.9366 bits (167), Expect = 9.107e-8 Identity = 79/327 (24.16%), Postives = 148/327 (45.26%), Query Frame = 1 Query: 760 EEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKK-------------IENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQ----KRHESKITN---FNNELESNRNELIITKQKLDVLIEENIT--KENALIEQ------KNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLK 1656 EE N S Y + E+ N +++ + + E ++ +LH+KLK EA K++ WK + +L+ +KL E+ ++ SLR SNL+ QM +EN SL + E++ R + KK I +R+LC+ +K +IE ++ C S MQ F +QKV +L ++ D Q + ES+ N N + ++N L +L ++E+ ++ +E +LI + KN+ L+++ +E+ +++ +++G + + L+ +IE N E+ N+K Sbjct: 218 EEGNQDSNYQCRSMGEMNNVQRQSAHEEGQCREVEACDSDGYDKLAILHVKLKNEAVKLENWKNEMIAKLNKNEEKLAEANTLVASLRKSNLELQMDRENASLKVKDEVEKREAIEKKWFIYCNLMYLCHRIIGTRDLCEAIKTQIEFVQST------------------------------CTSTMQTCFKTATTQKVLE-----ALLENTFKDFQNLSIQLDESRAKNRKQLNEKHNHDKNTLSTRNSELTAVLEKLVSEREEISLISKKCAETLKNQILKIRTTLES-------MDLFLEVGSQMKFGLEKEIESVNIELLNVK 502
BLAST of transverse filament protein SYCP-1 vs. Planmine SMEST
Match: SMESG000073774.1 (SMESG000073774.1) HSP 1 Score: 1730.3 bits (4480), Expect = 0.000e+0 Identity = 1035/1057 (97.92%), Postives = 1041/1057 (98.49%), Query Frame = 1 Query: 604 ITFSPKKVSGNSIVNNQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHNYEEANDISKYTNETFEEIKNALVENSTDYNELSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESKITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLQSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTXXXXXXXXXXXXXXXXXXXKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKFQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCXXXXXXXXXXXXXXXXXXXXXXXSLTLDSQNVSNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDXXXXXXXXXXXXXXXXXXXINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLTSLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKESISIIDNYKHNIIVATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPXXXXXXXXXXXXXXXENWFDSDNFFGFGLEA 3774 + FSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYN+LSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHES+ITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNL+SDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENK QIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNV+NKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQL SLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKE +ATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA Sbjct: 183 LQFSPKKVSGNSIVNNQFENNIKNDLIDINEDLNDKNNNFEKFNETTNHHNYEEANDISKYTNETFEEIKNALVENSTDYNDLSFCEIPKESENSQIKVLHIKLKIEAEKIQKWKENLEKQLSSKNQKLKESEKIIESLRASNLDFQMQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKESTNLKTIQNKTLTITDNILEDIKCYSEMQLIFADNISQKVFSKNEEIKILNDSISDLQKRHESEITNFNNELESNRNELIITKQKLDVLIEENITKENALIEQKNKSLQLQKEIENRLDDILKLEISIKLGEENNYNLRSDIEIKNREVTNLKEMLTLMEESHLKVKESMSLEIESINVKFKTNIELNENLKAINLKNSEEIESLNLMIENLKEEFCSKMQIKDNSIGNLTNSIIEKENNISNLENLIKSKNERLNDLESEITKLKLENETISKNNLILKSSNTDLREETESQILEINKLSNNLTENKIQIENLNDIIKNLDSQNGNLKDSIQKLIEENQTINNEYSTIQKNLIEIQNKNEELEISIINSNAQENNIVREQNSNIKDLQEKLIILQNENDEMKLRIEYVEKEKENSRNFLSSLSDENNVLSKTVEEFKALLVSQDKDLQIAISQKNELVKNQKIAEDKIKNFEKHTFEFENIVSENKFKITSLETFVDDLSKEKHNILKSREDLRKELMFTLEQCKNEHEIVEKKKNKEIENLKNLVNSLTLDSQNVTNKSKNKLSEITSKLNNQKEEIEKLKSDLQKARVEKDQTKKLLDKANLSINDLSEKLVSVENVVEELENSKINLKAQAAKGDNKVAIMAKEIAEKDSIISKLSVIEMDYTNLKSKLLSNSPPVCTQIPEYIQLASLATPKSQKLSTKLENFNELTNICSNVTICKQTSQKTSKGILRQPGSASKRRKVLFDENDLVQTKLDISDNDSVHSDGVDIDLENIDCVNKE-------------IATTPKKPSLVCKLNLTDSKNNGRLTNVRKTPSKVSSKLSDKRKKDKENWFDSDNFFGFGLEA 1226 HSP 2 Score: 347.436 bits (890), Expect = 4.398e-100 Identity = 184/190 (96.84%), Postives = 184/190 (96.84%), Query Frame = 2 Query: 59 MKTSFLKGFFNSKDNSKSNYSIHNXXXXXXXXXXXXHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCPQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRNLEQIQCLKDNKIKKSPVPWRLHFHQKKF 628 MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNC QFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRN EQIQCLKDNKIKKSPVPWRL F KK Sbjct: 1 MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHDIKSNKSDDIFHKKFNIYSLNESISSINSDIKSPISNEFNFSKNKNLYSHNEHENMSKTKNCLQFTAPSPLSLLKTPTKEIKLNQFDTNYKNCLIKGLGSPTILSKGFINRNHEQIQCLKDNKIKKSPVPWRLQFSPKKV 190 The following BLAST results are available for this feature:
BLAST of transverse filament protein SYCP-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of transverse filament protein SYCP-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of transverse filament protein SYCP-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of transverse filament protein SYCP-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of transverse filament protein SYCP-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30003599 ID=SMED30003599|Name=transverse filament protein SYCP-1|organism=Schmidtea mediterranea sexual|type=transcript|length=3874bpback to top protein sequence of SMED30003599-orf-1 >SMED30003599-orf-1 ID=SMED30003599-orf-1|Name=SMED30003599-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=911bp MQQENISLNYQMELDCRSEVSKKIENSRNLCQILKQKIENIEKINQNHIKback to top protein sequence of SMED30003599-orf-2 >SMED30003599-orf-2 ID=SMED30003599-orf-2|Name=SMED30003599-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=196bp MKTSFLKGFFNSKDNSKSNYSIHNVDLDDSDDAVLSHENFFQKNNSPKEHback to top Annotated Terms
The following terms have been associated with this transcript:
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