Ribonucleases P/MRP protein subunit POP1

Overview


Name	Ribonucleases P/MRP protein subunit POP1
Smed ID	SMED30003472
Length (bp)	2488

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Ribonucleases P/MRP protein subunit POP1 (SMED30003472) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribonucleases P/MRP protein subunit POP1 (SMED30003472) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribonucleases P/MRP protein subunit POP1 (SMED30003472) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribonucleases P/MRP protein subunit POP1 (SMED30003472) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30003472

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
X1 cell	SMED30003472	SMESG000075448.1	SmedASXL_014903	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30003472	SMESG000075448.1	SmedASXL_014903	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Human
Match: POP1 (POP1 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30129])

HSP 1 Score: 176.022 bits (445), Expect = 9.063e-45
Identity = 163/623 (26.16%), Postives = 259/623 (41.57%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLA-----KAVPAKKIQRKCRYYIRRR--LNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPC----KILRISAGQSVGSSFLLSFHTCCRDEVIQT-------------------------------------ISKIFALRDIGSNC-------------------WTTDSGKAIVRDRSTEFSRFRLIGSRSQNV---------VHGLLDDA--SPFR---TVLARPLS---------------------EIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDS-------VAAVPLRQLDECSR-FLTNPDLIAAIKDD--SQSSLEQLVKFDLDP---IIDGEKCAAMVTRVHYQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            ST+  + A E+    K V   SS++L   Q LP  +RRRA SH  +RLP R +++A     KAV  KK   K + +  RR  +N    + +RQ K  WL THIWHAKRF +V KWG+ +   P  K+ R C +AMTN C + D+SY+C LEL GK   I+  L+ +  I+ G        +   +Q S  +YR+NK+P   +GP     K  R     S      +  H   + ++++                                      I K    +D G N                    W + +   I+ D + E +RFRLIG  S ++         VH + +D   +P R       +P S                     EI +G      + D +   P  K++  +      +D+       +  VP+    EC+  F+ N D+  ++ ++  S   L ++    L P   +I G   + +   +  Q GK  G        GW++++P  W M  W+  + +G R  G +  A +   + S  +          +PD  +G+L +E         +KRRP AKR N+ +  T +PF CPW+++  D
Sbjct:  105 STFAQARAAEISAMLKAVTQKSSNSLV-FQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVKSHRACYRAMTNRCLLQDLSYYCCLELKGKEEEILKALSGMCNIDTGLTFAAVHCLSGKRQGSLVLYRVNKYPREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADPLPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGIIISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFELLGGITSPAEIPAGTILGLTVGDPRINLPQ-KKSKALPNPEKCQDNEKVRQLLLEGVPV----ECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTGEDRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPG-------DFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQD 714

[Close]

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLA-----KAVPAKKIQRKCRYYIRRR--LNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPC----KILRISAGQSVGSSFLLSFHTCCRDEVIQT-------------------------------------ISKIFALRDIGSNC-------------------WTTDSGKAIVRDRSTEFSRFRLIGSRSQNV---------VHGLLDDA--SPFR---TVLARPLS---------------------EIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDS-------VAAVPLRQLDECSR-FLTNPDLIAAIKDD--SQSSLEQLVKFDLDP---IIDGEKCAAMVTRVHYQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            ST+  + A E+    K V   SS++L   Q LP  +RRRA SH  +RLP R +++A     KAV  KK   K + +  RR  +N    + +RQ K  WL THIWHAKRF +V KWG+ +   P  K+ R C +AMTN C + D+SY+C LEL GK   I+  L+ +  I+ G        +   +Q S  +YR+NK+P   +GP     K  R     S      +  H   + ++++                                      I K    +D G N                    W + +   I+ D + E +RFRLIG  S ++         VH + +D   +P R       +P S                     EI +G      + D +   P  K++  +      +D+       +  VP+    EC+  F+ N D+  ++ ++  S   L ++    L P   +I G   + +   +  Q GK  G        GW++++P  W M  W+  + +G R  G +  A +   + S  +          +PD  +G+L +E         +KRRP AKR N+ +  T +PF CPW+++  D
Sbjct:  105 STFAQARAAEISAMLKAVTQKSSNSLV-FQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVKSHRACYRAMTNRCLLQDLSYYCCLELKGKEEEILKALSGMCNIDTGLTFAAVHCLSGKRQGSLVLYRVNKYPREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADPLPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGIIISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFELLGGITSPAEIPAGTILGLTVGDPRINLPQ-KKSKALPNPEKCQDNEKVRQLLLEGVPV----ECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTGEDRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPG-------DFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQD 714

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Celegans
Match: C05D11.9 (pep chromosome:WBcel235:III:6427529:6430934:-1 gene:WBGene00015486.1 transcript:C05D11.9.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C05D11.9)

HSP 1 Score: 95.5153 bits (236), Expect = 5.919e-20
Identity = 56/182 (30.77%), Postives = 94/182 (51.65%), Query Frame = 2

Query:  596 TQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRKC--RYYIRRRLNLKAVYLKR-QLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQ 1132
            T  QRLP  +RRRA ++  RR P   R+ A A    K  +KC  R+  R+  N +  + +    K  WL TH+WHAKRF+++ KWG+++     Q+ FR   +     C + D SY+  + +  +     +K++   + G C+   S+ +E  +    +Y   K+P+G IGP +  R+S  +
Sbjct:   39 TAAQRLPRHMRRRAMAYDIRRFPRTMREFAAAHLISKHAKKCPSRFARRKSANSRTKFGRSTSTKGIWLSTHVWHAKRFRMIQKWGFKLADRSFQRGFRAVLRDSNKNCVIRDRSYYTCVTI--QCTDAYSKISQFSQKG-CRGQSSRDEE--EECHQLYMPGKYPFGYIGPARFQRLSGDK 215

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Fly
Match: l(1)G0045 (gene:FBgn0026702 transcript:FBtr0070782)

HSP 1 Score: 114.39 bits (285), Expect = 1.105e-25
Identity = 62/174 (35.63%), Postives = 99/174 (56.90%), Query Frame = 2

Query:  602 LQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAK------KIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKL---MKSQIKEGKQVSFTMYRLNKWPYGAI 1096
             Q LP  +RRRA SH  +RLP ++R+  K+   K        +R  R Y RR  NL   Y++RQ +  WL THIWHAKRF +V++WG R+PY    KT+R C +A    C + DIS++  +EL G  + ++ +  + + + QC L    ++ +   ++ S  ++   ++PYGA+
Sbjct:   54 FQTLPKHMRRRAMSHHPKRLPRKYRQAHKSQMGKSGNQPVNGKRPSRKYRRRPKNLMREYVRRQRRHVWLETHIWHAKRFHMVDRWGHRLPYASCDKTYRACYRASAEHCLLQDISFYGCVELRGPLD-MLREGFARLTSPQCGLGITARTFLSGRREGSVELFEDGRYPYGAL 226

HSP 2 Score: 71.633 bits (174), Expect = 2.197e-12
Identity = 88/354 (24.86%), Postives = 142/354 (40.11%), Query Frame = 2

Query: 1283 EFSRFRLIGSRSQNVVHG---------LLDDASPFRTVL--ARPLSEIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLVKFDL----DPIIDGEKCA----------AMVTRVHYQDGKA-----AGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD--------SADHPFYVIRDINMLFRVVRQIFDGSVKPTVDELNQFLPDAQWALVPVNLESGSTIPSSNAVIMAANLDDDQQ 2230
            EF+RFRL G R+Q V+           L D A+  +  L  + P +E+ S       + D + +RP  K+T  VG +     S   +    +++      +P      ++     +    K+D       ++ G  CA           ++ R   QD +        GW+++ PA + M +W+ L M G RP G R      A EA + +           PDT +GV  + +S D+    + R P  KR N+ +    SPF+ PW+ ++ D        S    FYV+R    L  +V  I   S  P      Q LPD     + + L S   +   NA+I      D ++
Sbjct:  350 EFNRFRLTGPRAQKVLFASLRPHREEELQDKANYCQAALQLSSP-AELLSNLVMAHLVVDPRLQRPK-KRTKAVGKMEQPPLSAGDL---LMNQPKSLPESPLWSKKARERLAKGIMSAHKYDQLREQHAVVPGAPCAFEQQMQALPVILIQRPGSQDPRYKRLGYGCGWDVIAPAGYGMTLWLTLTMWGARPGGLRELD-SVAREAGAEIH---------LPDTLAGVQRAAASADELRARYFRMPPNKRTNYRKLAVVSPFTAPWRHLVRDWRASFSSASEGSSFYVLRHRQQLEEIVESIRHRSPLP------QTLPDDAIIQIQLQLLSRGHV-KDNALICLPTAADHKK 681

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Zebrafish
Match: pop1 (POP1 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-120911-1])

HSP 1 Score: 114.39 bits (285), Expect = 2.478e-26
Identity = 69/211 (32.70%), Postives = 104/211 (49.29%), Query Frame = 2

Query:  611 LPISLRRRAASHKTRRLPFRFRKLA-------KAVPAKKIQRKCRYYIRR--RLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQI-KEGKQVS-FTMYRLNKWPYGAIGPCKIL-RISAGQSVGSSFLLSFHTCCRDEVIQTISKI 1207
            LP  +RRRA SH T RLP R R  A       +  P K  Q K R    R    +L   + +RQ + +WL THIWHAKRF + N W +R+P+ P  K++R   +AM     + D+SYFC LEL G    I+  L+ +          + +   G +V    +YR  ++P+GA+GP + L R  A +       +  H   + +V+  +  +
Sbjct:   86 LPKHMRRRAMSHNTHRLPLRLRDAALRLAERSQRGPEKPPQAKSRSRRARRRHTHLLLEFNRRQRRSRWLETHIWHAKRFHMQNSWSYRLPHTPTAKSYRASYRAMDTHTLLQDLSYFCCLELQGPEEQILRALSQLTSKQTGPTFAASVCLSGARVGRLLLYRAGQYPHGALGPVEFLWRPRAPECTHRQLWIWIHPALKQDVLPELQAV 296

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Xenopus
Match: POP1 (POP1 homolog, ribonuclease P/MRP subunit [Source:NCBI gene;Acc:101732380])

HSP 1 Score: 133.65 bits (335), Expect = 2.323e-31
Identity = 74/203 (36.45%), Postives = 112/203 (55.17%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKI-------QRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLT--SVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIG 1099
            + +  + A E+    K V+  SS+ L   Q LP  +RRRA  H  +RLP R R++AK    K         + KCR   RR  NL+  + +RQ K  WL THIWHAKRF +V KWG+ + + P  K++R C +AM++ C + D+SY+C L+L G+   ++N L+  +  E G        +   +Q S  +YR +K+P  A+G
Sbjct:   93 TMFAQARAAEINAMVKAVSQKSSNTLV-FQSLPRHMRRRAMGHDIKRLPRRLREVAKKEMEKSAHLKKEVSKNKCRKARRRHGNLQLEFNRRQRKNIWLETHIWHAKRFHMVKKWGYCLGHRPTMKSYRACYRAMSSNCLLQDLSYYCCLQLMGEEAALLNALSRLTSTETGPSFAAALCLSGKRQGSLVLYRADKYPKEALG 294

HSP 2 Score: 69.707 bits (169), Expect = 1.624e-11
Identity = 70/310 (22.58%), Postives = 121/310 (39.03%), Query Frame = 2

Query: 1238 WTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLL----------DDASPFR-------------------------TVLARPLSEIASGYAFETEIEDLKSKRPALKQTDIVGFVSYA-RDSVAAVPLRQLD-ECSR-FLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGEKC------AAMVTRVHYQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            WT+      + D + EF R+RL G  S +V+   L           DA P                             +  P +E   G      + D +   P  K   +     Y  RD V ++ L     EC++ F+   D+ + + ++  S  +++ +   + ++ G +       + +   +    GK  G        GW+I +P  W M  W+  + +G R  G +      AL+ S  M   D    F  PD  +GV  ++ + D     +KRRP AKR NF +    +PF CPW+++ ++
Sbjct:  400 WTSKHTAIRISDLTMEFVRYRLTGPLSHSVLTEALRSAPLHKETESDAGPHTWWADYCSNPENVRLHTLQESMFQLLQAVGSP-AEFPPGTILGLTVGDPRLNLPKQKTKAVPSVEKYEDRDQVKSIKLNGFPLECAQSFIWASDICSKVTENKVSE-QEINRMRSELLVPGSRLDLGNSESKIPVLLIQHPGKRTGTDRPGWGSGWDICLPKGWGMAFWIPFIYRGVRVGGLQQ-----ALQHSQYMGIPDAPGDF--PDCPAGVQSAKETEDSLLEAYKRRPPAKRANFIKHGVLAPFRCPWEQLTAE 700

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Xenopus
Match: POP1 (POP1 homolog, ribonuclease P/MRP subunit [Source:NCBI gene;Acc:101732380])

HSP 1 Score: 133.265 bits (334), Expect = 3.197e-31
Identity = 74/203 (36.45%), Postives = 112/203 (55.17%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKI-------QRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIG 1099
            + +  + A E+    K V+  SS+ L   Q LP  +RRRA  H  +RLP R R++AK    K         + KCR   RR  NL+  + +RQ K  WL THIWHAKRF +V KWG+ + + P  K++R C +AM++ C + D+SY+C L+L G+   ++N L+ +   E G        +   +Q S  +YR +K+P  A+G
Sbjct:   93 TMFAQARAAEINAMVKAVSQKSSNTLV-FQSLPRHMRRRAMGHDIKRLPRRLREVAKKEMEKSAHLKKEVSKNKCRKARRRHGNLQLEFNRRQRKNIWLETHIWHAKRFHMVKKWGYCLGHRPTMKSYRACYRAMSSNCLLQDLSYYCCLQLMGEEAALLNALSRLTSTETGPSFAAALCLSGKRQGSLVLYRADKYPKEALG 294

HSP 2 Score: 67.3958 bits (163), Expect = 8.881e-11
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 2

Query: 1691 AGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
              GW+I +P  W M  W+  + +G R  G +      AL+ S  M   D    F  PD  +GV  ++ + D     +KRRP AKR NF +    +PF CPW+++ ++
Sbjct:  643 GSGWDICLPKGWGMAFWIPFIYRGVRVGGLQQ-----ALQHSQYMGIPDAPGDF--PDCPAGVQSAKETEDSLLEAYKRRPPAKRANFIKHGVLAPFRCPWEQLTAE 742

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Mouse
Match: Pop1 (processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914974])

HSP 1 Score: 131.724 bits (330), Expect = 8.108e-31
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 2

Query:  503 KEFDFSTYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRK-------CRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGP 1102
            K    ST+  + A E+    K V   SS++L   Q LP  +RRRA SH  +RLP R +++AK    K   +K       C    R  +N    + +RQ K  WL THIWHAKRF +V KWG+ +   P  K+ R C +AMTN C + D+SY+C LEL GK   ++  L+ +  I+ G        +   +Q S  +YR NK+P   +GP
Sbjct:  100 KYITASTFAQARAAEISAMLKAVTQKSSNSLV-FQTLPRHMRRRAMSHNVKRLPRRLQEMAKKEAEKAAHQKKEHSKNKCHKARRCHINRTLEFNRRQQKNIWLETHIWHAKRFHMVKKWGYCLGERPTAKSHRACYRAMTNLCLLQDLSYYCCLELKGKEEELLKALSQMCSIDAGLTFAAVHCLSGKRQGSLMLYRANKYPREMLGP 307

HSP 2 Score: 62.7734 bits (151), Expect = 1.747e-9
Identity = 37/122 (30.33%), Postives = 62/122 (50.82%), Query Frame = 2

Query: 1676 QDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFP-IFG-WPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            Q GK  G        GW++++P  W M  W+  + +G         AR   L+ +++ +++   P I G +PD  +GVL +E         ++RRP AKR N+ +  T +PF CPW+++  D
Sbjct:  602 QPGKVTGEDRLGWGSGWDVLIPKGWGMAFWIPFIYRG---------ARVGGLKEATVHSQYRRSPNIPGDFPDCRAGVLFAEDQAKDLLEKYRRRPPAKRPNYVKLGTLAPFCCPWEQLTRD 714

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Mouse
Match: Pop1 (processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914974])

HSP 1 Score: 131.724 bits (330), Expect = 8.376e-31
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRK-------CRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGP 1102
            ST+  + A E+    K V   SS++L   Q LP  +RRRA SH  +RLP R +++AK    K   +K       C    R  +N    + +RQ K  WL THIWHAKRF +V KWG+ +   P  K+ R C +AMTN C + D+SY+C LEL GK   ++  L+ +  I+ G        +   +Q S  +YR NK+P   +GP
Sbjct:  105 STFAQARAAEISAMLKAVTQKSSNSLV-FQTLPRHMRRRAMSHNVKRLPRRLQEMAKKEAEKAAHQKKEHSKNKCHKARRCHINRTLEFNRRQQKNIWLETHIWHAKRFHMVKKWGYCLGERPTAKSHRACYRAMTNLCLLQDLSYYCCLELKGKEEELLKALSQMCSIDAGLTFAAVHCLSGKRQGSLMLYRANKYPREMLGP 307

HSP 2 Score: 62.3882 bits (150), Expect = 2.201e-9
Identity = 37/122 (30.33%), Postives = 62/122 (50.82%), Query Frame = 2

Query: 1676 QDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFP-IFG-WPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            Q GK  G        GW++++P  W M  W+  + +G         AR   L+ +++ +++   P I G +PD  +GVL +E         ++RRP AKR N+ +  T +PF CPW+++  D
Sbjct:  632 QPGKVTGEDRLGWGSGWDVLIPKGWGMAFWIPFIYRG---------ARVGGLKEATVHSQYRRSPNIPGDFPDCRAGVLFAEDQAKDLLEKYRRRPPAKRPNYVKLGTLAPFCCPWEQLTRD 744

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. UniProt/SwissProt
Match: sp|Q99575|POP1_HUMAN (Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens OX=9606 GN=POP1 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 4.352e-44
Identity = 163/623 (26.16%), Postives = 259/623 (41.57%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLA-----KAVPAKKIQRKCRYYIRRR--LNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPC----KILRISAGQSVGSSFLLSFHTCCRDEVIQT-------------------------------------ISKIFALRDIGSNC-------------------WTTDSGKAIVRDRSTEFSRFRLIGSRSQNV---------VHGLLDDA--SPFR---TVLARPLS---------------------EIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDS-------VAAVPLRQLDECSR-FLTNPDLIAAIKDD--SQSSLEQLVKFDLDP---IIDGEKCAAMVTRVHYQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            ST+  + A E+    K V   SS++L   Q LP  +RRRA SH  +RLP R +++A     KAV  KK   K + +  RR  +N    + +RQ K  WL THIWHAKRF +V KWG+ +   P  K+ R C +AMTN C + D+SY+C LEL GK   I+  L+ +  I+ G        +   +Q S  +YR+NK+P   +GP     K  R     S      +  H   + ++++                                      I K    +D G N                    W + +   I+ D + E +RFRLIG  S ++         VH + +D   +P R       +P S                     EI +G      + D +   P  K++  +      +D+       +  VP+    EC+  F+ N D+  ++ ++  S   L ++    L P   +I G   + +   +  Q GK  G        GW++++P  W M  W+  + +G R  G +  A +   + S  +          +PD  +G+L +E         +KRRP AKR N+ +  T +PF CPW+++  D
Sbjct:  105 STFAQARAAEISAMLKAVTQKSSNSLV-FQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVKSHRACYRAMTNRCLLQDLSYYCCLELKGKEEEILKALSGMCNIDTGLTFAAVHCLSGKRQGSLVLYRVNKYPREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADPLPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGIIISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFELLGGITSPAEIPAGTILGLTVGDPRINLPQ-KKSKALPNPEKCQDNEKVRQLLLEGVPV----ECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTGEDRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPG-------DFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQD 714

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. UniProt/SwissProt
Match: sp|Q11188|YPD9_CAEEL (Uncharacterized protein C05D11.9 OS=Caenorhabditis elegans OX=6239 GN=C05D11.9 PE=4 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 7.529e-19
Identity = 56/182 (30.77%), Postives = 94/182 (51.65%), Query Frame = 2

Query:  596 TQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRKC--RYYIRRRLNLKAVYLKR-QLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQ 1132
            T  QRLP  +RRRA ++  RR P   R+ A A    K  +KC  R+  R+  N +  + +    K  WL TH+WHAKRF+++ KWG+++     Q+ FR   +     C + D SY+  + +  +     +K++   + G C+   S+ +E  +    +Y   K+P+G IGP +  R+S  +
Sbjct:   39 TAAQRLPRHMRRRAMAYDIRRFPRTMREFAAAHLISKHAKKCPSRFARRKSANSRTKFGRSTSTKGIWLSTHVWHAKRFRMIQKWGFKLADRSFQRGFRAVLRDSNKNCVIRDRSYYTCVTI--QCTDAYSKISQFSQKG-CRGQSSRDEE--EECHQLYMPGKYPFGYIGPARFQRLSGDK 215

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. UniProt/SwissProt
Match: sp|Q9UTA4|POPI_SCHPO (Ribonucleases P/MRP protein subunit pop1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pop1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.601e-12
Identity = 77/307 (25.08%), Postives = 120/307 (39.09%), Query Frame = 2

Query:  584 SSALTQLQRLPISLRRRAASHKTRRLPFRFRKLA---------KAVPAKKIQRKCRYYI---RRRL---------------------------NLKAVYL------KRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTK-AMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCWTTDSGKAIVRDR------STEFSRFRLIGSRSQNVVHGLLDD 1348
            SSA    Q LP  LRRRAASH  +R+P   R  A           +P    +++ + +I   RR+L                           +L AV L       RQL+  WL TH+W  KR  ++N WG+ +P +P +K++RP  + A        D+SY     + G    +  K  +   NG   +  +  +     SFT Y +    +  I PC +   +  +       +   T C   VI+     F         W   SG A++ DR        + + F + G  S  ++H + DD
Sbjct:   64 SSAQRAFQALPRCLRRRAASHNIKRIPKGLRDRALYEMQLSSSSTLPIAPSRQRLKRFIKRLRRKLAKSGETKAIDSTGSLVTDNSTDDSRIPSLAAVKLIRGKFAGRQLRKVWLPTHLWVCKRAHMINAWGYAIPEKPTEKSYRPTHRAAFRKDAIAFDMSYEPLFCISGPYEALKEKFGNSFANGLPPVFLNSSR-----SFTSYLVKSDIHELICPCFLQWNNPTEDDKKQIPVKNPTECVQLVIRLHPSAFL------QAWNYLSGIAVLDDRIAMHDWRLDLASFDIHGPDSNIMLHKVFDD 359

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. UniProt/SwissProt
Match: sp|P41812|POP1_YEAST (Ribonucleases P/MRP protein subunit POP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=POP1 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.004e-6
Identity = 42/145 (28.97%), Postives = 70/145 (48.28%), Query Frame = 2

Query:  761 YLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTK-----AMTNGCCVVDISYFCTLELFGKAN--------TIINKLTSVIENGQCKLMKSQIKEGKQVSFT--MYRLNKW----PYGAIGPCKILRISAGQSV 1138
            Y KRQ    WL THIW+AKR  ++ +WG+++ + P QK F+   +       ++G   +D SY  T+ +  K+N        +II KLT+   N +      + +EG QV F   +Y  N+         +GPC +  +    ++
Sbjct:  230 YTKRQKHFAWLPTHIWNAKRSHMMKRWGYQMVWAPTQKCFKLTHRLGGDTCSSDGALCMDSSYIGTIIVKDKSNDSEGDFLKSIIGKLTAERANLR------KYREG-QVLFQGLIYSFNEENGEDSTKPLGPCDVFWVQKDTAI 367

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
Match: A0A1B0CL73 (Uncharacterized protein OS=Lutzomyia longipalpis OX=7200 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.144e-49
Identity = 170/634 (26.81%), Postives = 288/634 (45.43%), Query Frame = 2

Query:  518 STYLISHAE-ELKQFSKDVNILSSSALTQL--QRLPISLRRRAASHKTRRLPFRFRK-----LAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEG-KQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRD------------IGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLD-------DASPFR--------------TVLARPLSEIASGYAFETEIEDLKSKRP-----ALKQTDIVGFVSYARDS--VAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLV-----KFDLD----PIIDGEKCAAMVTRVHYQDGKAAGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD----SADHPFYVIRDINMLFRVVRQIFDGSVKPTVDELN---QFLPDAQWALVPVN-LESGSTIPSSNAVIMAANLDD 2221
            + Y   +AE  L + +  +  + +    +L  Q +P  +RRR A+   +RLP RFR+     L K+    + +R  R Y RR  NL+A Y +RQ  + WL THIWHAKRF +  KWG+R+P+ P  K++R C +A  + C V DIS +   EL G     + +L ++    +   +      G ++ +  ++R N++P+GAIG    +    G+       +  H    +E+ + I  +FAL +              +      SG   +RD + +  RFRL G  S  ++   L        D++ F               + +  P +E+A G      +ED +  RP     AL +  + G +    +   ++A+     DE  R     +++   K + +   E L+     KF+ D    P++  ++      +V  +    A GW++++PA ++  MW++ +M G R  G+R      A+  S  M + D F     PDT +G  E+ +S D+Q   + R+P  KR NFT+    SPF CPW+++L +    S    FY++RD        R+I +   K    +LN     LPD    L+P+  L +    P +NA++      D
Sbjct:   22 TEYTFQYAEGRLPELASLIGTVRNPTKNKLIFQSIPRHMRRRTAAQNPKRLPMRFRQGHISQLKKSGTPTEKKRPSRKYRRRPRNLRAEYARRQRDVAWLETHIWHAKRFHMSTKWGYRIPWAPCDKSYRACYRATKSHCLVQDISIYACFELRGPL-VELTQLKALCNPTELSFIAKCFLSGQREGNVDVFRCNEYPFGAIGRVSFIWKPPGREDQRCLWIFAHPAFAEEIHKQIRDLFALSEASAMELDDQEAPTSNKLHRNASGSIEMRDLTKKLCRFRLTGPLSHAILSKALKCKLNPQIDSTDFTLEAHESQIKYWKEISTIKSP-AELAPGMILGLTVEDPRINRPEKRSKALPEDHLCGLIEKIPNQGCLSAI----WDENLRNNLAENILNTQKYNEKRQKECLIPGQRCKFEDDLQGVPVLLVQRPG---VQVQNKPLGFACGWDVILPACYATIMWISFIMWGARAGGWRD-----AISTSREMGQ-DTFA----PDTEAGKREAVTSGDEQKEQFFRKPPKKRPNFTKLSIASPFHCPWEQLLQEWSTGSPTSSFYILRD--------RKILEQCQKALKYQLNIQEILLPDC--TLIPIQILLNSRGNPGNNAILTLPQPQD 626

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
Match: A0A5J4NVT6 (Ribonuclease P/MRP protein subunit POP1 OS=Paragonimus westermani OX=34504 GN=DEA37_0007511 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.439e-48
Identity = 203/768 (26.43%), Postives = 318/768 (41.41%), Query Frame = 2

Query:  509 FDFSTYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRK-------------LAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQL---------------KIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENG---------------------QCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKIL--RISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTVLARP----LSEI------ASGYAFETEI-----EDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGE----------KCAAMVTRVHYQDGKAAGGWEIVVPAKWSMK----------------MWMALVMKGCRPIGYR---YWARYCALEASSLMAKHDCFPIFGWPDTASG------VLESESSRDKQSLLW-----------KRRPSAKRINFTRCVTESPFSCPW----QRILSDSADHPFYVIRDINMLFRVVRQIFDGSVKP--TVDELNQFLPDAQWALVPVNLES-GSTIPSSNAVIMAANLDDDQQVVLEADKSLI------RPVIGYLELADQSLAVGQGRGFGFVSLYQAVALCTLYR-----PLTQFVWFKNTNTTRF 2422
            F+      + A EL +F   VN+L++ ALT LQRLP+ LRRRAASH+  RLP R  +               K V  K  + KCR + RRRL L A   +                  K +WL TH+WH KRF ++  WGWR+P  P  K F+ C  A  NGC V D+SY   LE+ G    ++N L  +++                       Q  L  ++       S  + R++   +  +GP ++L    S   +      +  H    DE    +++  A  +    C   DS +  + +R+ + SR   IG ++  +   L D   P ++ + R      SE+      AS   + T I      D ++ RP LK  +    ++ A  S A  P   +    +  T  +L        Q  +     F   P+ D E          + AA      Y       GW++++     +                 + ++ V +G    G R   YW+      ++S+++    +P   WPDT+ G      V      R +Q  +W            RRP   R N+ R  T  PFS PW    +R L      P++V+RD  ML  VV+++  G  +   T++ L +      WAL+ V + + G  +P  NA++ AAN+DDD     + D ++       RPV+GY++  + + AVG G G G++SL    A+ T+ +     P    VW KN  TTR 
Sbjct:   17 FNVVQLATTRAAELAEFEATVNVLTTHALTGLQRLPVRLRRRAASHRVNRLPRRLHRHHPSSQNEQAQLTTKKPVEVKHTKTKCRRFRRRRLRLLAFAARFAASTASINKTSDRSVPSKPRWLPTHLWHTKRFHMITVWGWRLPQAPTNKVFKACQSASLNGCLVFDLSYLSCLEMCGSERDLVNCLQQLVQYSSLAGSACVPINDCGAPKYACEQVGLFLAKPIASDLASSAVERIH---HPVLGPVRVLWAYPSEPTTKHRHVYIWLHPAMSDEAEGLLTECVARYNRA--CTKDDSVQ--LYNRTGQVSRLCTIGRQAHQL---LADVLVPSQSAVKRGDWNLWSELITNCRQASCIPYGTTIFLPDCSDFRTNRPKLKIRNRNWVIAPAERSKAVAPTGVISG-GKLYTWTEL-----RSHQPGINFRTLFSNCPLRDAESGTDTDVLLVQNAAPTLATSYPH---CTGWDLILVRSHHLSSTEDLLTLRGSLAARDLLISCVYRGAEVGGLRDWQYWSTIGTQGSASMLS----YPACLWPDTSGGQDWDAQVATRNQLRYRQ--VWGDFLCHIENYTHRRPPKLRPNYARFGTSHPFSAPWNELLRRYLPSDDKRPYFVLRDPAMLRLVVQRMISGEPRACLTIEHLTRCDVALPWALILVRISAVGRGVPKPNAILYAANVDDDLTKDSQVDYAISECDLNQRPVLGYVQTGNFNHAVGHGTGLGYISL---AAIATVIQHPNVGPNLTCVWMKNIATTRL 756

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
Match: U3J445 (POP1 homolog, ribonuclease P/MRP subunit OS=Anas platyrhynchos platyrhynchos OX=8840 GN=POP1 PE=4 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 2.893e-46
Identity = 168/613 (27.41%), Postives = 266/613 (43.39%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLA-----KAVPAKKIQRK--CRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIF-----------------------------------------------------ALRD-IGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTVLARPLSEI-------------ASGYAFETEIEDLK---SKRPALKQTDIVGF------VSYARDSVAAVP----------LRQLD------ECSR-FLTNPDLIAAIKDD--SQSSLEQLVKFDLDP--IIDGEKCAAMVTRVHYQD-GKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            ST+  + A E+K   K V   SS++L   Q LP  +RRRA SH  +RLP R +++A     KAV  KK Q K  CR   RR +NL A + +RQ K  WL THIWHAKRF +V KWG+ +   P +K +R C +AMTN C + D+SY+C LEL GK N ++ +L  +  ++ G    +   +    Q S  +YR +++P  A+GP   +      S      +  H   + +++  + +IF                                                       RD + S  W + +   ++ DR+ E  R+RLIG  S  V+   L  AS  +T +A   SE+              S +  +T I +L    S    +    I+G       V+  +    A+P          +RQL       EC+  F+ + D+   + ++  S+  L Q+    L P   +D   C + +  +  Q  GK AG        GW+I +P  W M  W+  + +G R  G +  A++   + +             +PD  +G+  ++         +KRRP AKR N+ +  T SPF CPW+++  +
Sbjct:  102 STFAEARAAEMKAMLKAVTQKSSNSLV-FQTLPRQMRRRAMSHNIKRLPRRLQEIARKEAEKAVHQKKEQSKTKCRKARRRHVNLVAEFNRRQRKNIWLETHIWHAKRFHMVKKWGYCLGNSPTEKCYRACYRAMTNHCLLQDLSYYCCLELTGKENELLKQLARICSVDTGLTFRVARCLSGRFQGSLNLYRADRYPEDALGPVTFIWKPRDGSEKRQLWIWIHPALKQDILNELKEIFQCSEPEKVYIPEPATTSAQEEEQMDVVLSLGKKRKKEDKEGEKAVPVKKIIGDGTRDPLQSYSWISQTTGVVISDRTMEILRYRLIGPLSHCVLTETLKAAS-LQTEMADSESELNNWWVENCKDSEKVSLHQRQTAIFELLEGISSPSQMPPGTILGLTVGDPRVNLPKKKRKAMPDPEKYQDNDKVRQLYLEGVPVECAHSFIWDQDICKNVTENKISEQDLNQMRAQLLVPGSQLDLGPCESKIPILLVQQPGKMAGEDRPGWGSGWDIYLPKGWGMAFWIPFIYRGVRVGGLQEAAKHSEYQRTPHTPND-------FPDCPAGMQFAKELEATLLEKFKRRPPAKRANYIKLGTLSPFICPWEQLTKN 705

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
Match: R0L6X4 (Ribonucleases P/MRP protein subunit POP1 (Fragment) OS=Anas platyrhynchos OX=8839 GN=Anapl_03879 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.385e-45
Identity = 168/615 (27.32%), Postives = 266/615 (43.25%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLA-----KAVPAKKIQRK--CRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV--IENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIF-----------------------------------------------------ALRD-IGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTV--LARPLSEI-------------ASGYAFETEIEDLK---SKRPALKQTDIVGF------VSYARDSVAAVP----------LRQL------DECSR-FLTNPDLIAAIKDD--SQSSLEQLVKFDLDP--IIDGEKCAAMVTRVHYQD-GKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            ST+  + A E+K   K V   SS++L   Q LP  +RRRA SH  +RLP R +++A     KAV  KK Q K  CR   RR +NL A + +RQ K  WL THIWHAKRF +V KWG+ +   P +K +R C +AMTN C + D+SY+C LEL GK N ++ +L  +  ++ G    +   +    Q S  +YR +++P  A+GP   +      S      +  H   + +++  + +IF                                                       RD + S  W + +   ++ DR+ E  R+RLIG  S  V+   L  AS  +TV  +A   SE+              S +  +T I +L    S    +    I+G       V+  +     +P          +RQL       EC+  F+ + D+   + ++  S+  L Q+    L P   +D   C + +  +  Q  GK AG        GW+I +P  W M  W+  + +G R  G +  A++   + +             +PD  +G+  ++         +KRRP AKR N+ +  T SPF CPW+++  +
Sbjct:    5 STFAEARAAEMKAMLKAVTQKSSNSLV-FQTLPRQMRRRAMSHNIKRLPRRLQEIARKEAEKAVHQKKEQSKTKCRKARRRHVNLVAEFNRRQRKNIWLETHIWHAKRFHMVKKWGYCLGNSPTEKCYRACYRAMTNHCLLQDLSYYCCLELTGKENELLKQLARICSVDTGLTFRVARCLSGRFQGSLNLYRADRYPEDALGPVTFIWKPRDGSEKRQLWIWMHPALKQDILNELKEIFQCSEPEKVYIPEPATTSAQEEEQMDVVLSLGKKRKKEDKEGEKAVPVKKIIGDGTRDPLQSYSWISQTTGVVISDRTMEILRYRLIGPLSHCVLTETLKAAS-LQTVRKIANSESELNNWWVENCKDSEKVSLHQRQTAIFELLEGISSPSQMPPGTILGLTVGDPRVNLPKKKRKTMPDPEKYQDNDKVRQLYLEGVPVECAHSFIWDQDICKNVTENKISEQDLNQMRAQLLVPGSQLDLGPCESKIPILLVQQPGKMAGEDRPGWGSGWDIYLPKGWGMAFWIPFIYRGVRVGGLQEAAKHSEYQRTPHTPND-------FPDCPAGMQFAKELEATLLEKFKRRPPAKRANYIKLGTLSPFICPWEQLTKN 610

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
Match: A0A1B0DR33 (Uncharacterized protein OS=Phlebotomus papatasi OX=29031 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.841e-45
Identity = 140/544 (25.74%), Postives = 242/544 (44.49%), Query Frame = 2

Query:  602 LQRLPISLRRRAASHKTRRLPFRFRK-----LAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLM-KSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCWTTDSGKAI----------------VRDRSTEFSRFRLIGSRSQNVVHGLL----------DDASP----FRTVLARPLSEIASGYAFETEI------EDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGEKCA----------AMVTRVHYQDGKAA----GGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRIL---SDSADHPFYVIRDINML 2056
             Q +P  +RRR A+   +RLP RFR+     + K+    K +R  R Y RR  NL+  Y +RQ+K+ W+ THIWHAKRF +V KWG+++P+ P  K++R C +A    C + DISY   +E+ GK + +  +L  +    +     K  I   ++ +  +++ +K+P GAIG  +      GQ   S   +  H    +  I  +  +F L+ I       D  K +                V++   + +RFRL G  S  V+   L           D SP     +      +SEI+S     + I      ED +  RP  +   +   +     ++   P   +      + + +L   + +   ++ +   +   + +  GE+C+           ++ R   +D         GW+++VPA + +  W++L+M G R  G+R       +     M + D F     PDT     E ++  ++    + RRPS KR N+T+    SPF CPW++++   S+ +   FYV+RD  +L
Sbjct:   52 FQTMPNHMRRRTAAQNPKRLPVRFRQGHISQMKKSGMPTKKKRPSRKYRRRPSNLRKEYARRQMKVSWMETHIWHAKRFHMVKKWGYKIPWAPCDKSYRACYRATAKHCLIQDISYLNCVEIRGKMDELSPQLKRLCNPSELSFTAKCYISGQREGTLDIFKHDKYPLGAIGNVRFFWKPPGQEELSRLWIFIHPSFHNIFISELEDLFHLKRITE--MDVDEEKTVDEQSLTVYRCPGSSVEVQELRPKLNRFRLTGPLSNAVLSRALKCKQNPEIESQDFSPEAHEIQMKYWNEISEISSPAELPSNIILGLTVEDPRINRPQKRTKALPEALPLTSAALKIPPQINISP----IWDQELRKNLPERMMNTGKYNERRKKEALAPGERCSFEDKLQALPLLLIQRPGLRDSSKPLGFCSGWDVIVPAGYGIVTWVSLIMWGARAGGWRE-----TISTHREMGR-DVFA----PDTMVSQKEEDTEAEELRAKYFRRPSKKRPNYTKLSITSPFQCPWKQLVKEWSEDSSESFYVLRDRKIL 579

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Cavefish
Match: POP1 (POP1 homolog, ribonuclease P/MRP subunit [Source:NCBI gene;Acc:103038599])

HSP 1 Score: 116.316 bits (290), Expect = 3.782e-26
Identity = 75/244 (30.74%), Postives = 122/244 (50.00%), Query Frame = 2

Query:  518 STYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAK-----------KIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCK-----LMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKIL-RISAGQSVGSSFLLSFHTCCRDEVIQTI 1198
            S +  + A E+    K V+  + S+      LP  +RRRA SH T+RLP R R+LA  +  K           + + K R   RR  NL   + +RQ K KWL THIWHAKRF ++ KWG+ +   P  K +R   +AM++GC + D+SY+C L L+G    +++ L+ +            L  S  +EG  +   +Y+ +++P+  +GP + L R    +S      +  H   + E++  +
Sbjct:   85 SMFAKARAAEVNSMLKAVSKTTGSSHV-FGALPKHMRRRAMSHNTKRLPRRLRELADRMLEKSHHAGQKEKKEQSKTKSRRARRRHGNLLLEFNRRQRKNKWLETHIWHAKRFHMLKKWGYCLGERPTYKCYRASYRAMSSGCLLQDMSYYCCLGLWGPEEQLMSALSRLTSKDTGPTFAAVLCVSGQREGNTL---LYKADQYPHQPMGPAQFLWRPRNAESSLRQLWIWVHPTIKQELLSEL 324

HSP 2 Score: 67.3958 bits (163), Expect = 4.783e-11
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 2

Query: 1673 YQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFG--WPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            +Q GK  G        GW++++P  W M  W+ LV +G R  G         L+ S   +++ C P F   +PD  +GV   E    +    +KRRP AKR N+ +    +PF CPWQR+  +
Sbjct:  586 HQAGKQQGEERRGWGSGWDLLLPKGWGMAFWVPLVYRGVRVGG---------LQMSLKHSQNKCLPHFPHEFPDCPAGVRFQEEQEVELLNKFKRRPPAKRTNYIKHGCLAPFRCPWQRLTEE 699

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Sea Lamprey
Match: POP1 (POP1 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30129])

HSP 1 Score: 120.939 bits (302), Expect = 2.694e-28
Identity = 69/186 (37.10%), Postives = 97/186 (52.15%), Query Frame = 2

Query:  584 SSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAK-----AVPAKKIQRKCRYYI--RRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVI--ENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKIL 1114
            SS     Q LP  +RRRA SH  +RLP   R  AK     +    K+  KCR     RR  +L   Y +RQ +  WL TH+WHAKRF++  +WG+R+  +P  KT+R   +AM   C + D+SY+C LEL GK   ++  L+++   E G        +   +Q S  MYR N +P   +GP   L
Sbjct:   23 SSVRRVFQTLPTHMRRRAMSHNVKRLPRCLRDAAKREMDESSAKAKVVPKCRSRKARRRHGSLLLDYNRRQRRHVWLETHVWHAKRFRVAERWGYRLGLQPTTKTYRSAYRAMAQRCLLQDVSYYCCLELKGKQEVLLGVLSTLCSPETGTSFDGVDYLSGQRQGSLVMYRANGFPTQPLGPVTFL 208

HSP 2 Score: 54.299 bits (129), Expect = 1.110e-7
Identity = 31/104 (29.81%), Postives = 50/104 (48.08%), Query Frame = 2

Query: 1700 WEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            W++V+P  W M  W+ LV +G    G R   R+   +     A H  FP   +PD  +G      S++     +KR P AKR N+ +    +PF  PW+ ++ +
Sbjct:  520 WDLVLPKAWGMAFWIPLVYRGVVVGGLREAERHSQYQG----APH--FP-RDFPDCPAGSRHDAESKEAAIAKFKRYPPAKRPNYVKLAMPTPFHFPWELLVHE 616

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Yeast
Match: POP1 (Subunit of RNase MRP, nuclear RNase P and telomerase complexes; RNase MRP cleaves pre-rRNA, nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs, while telomerase replenishes telomeric DNA; binds to the RPR1 RNA subunit in RNase P [Source:SGD;Acc:S000005165])

HSP 1 Score: 56.6102 bits (135), Expect = 1.446e-8
Identity = 42/145 (28.97%), Postives = 70/145 (48.28%), Query Frame = 2

Query:  761 YLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTK-----AMTNGCCVVDISYFCTLELFGKAN--------TIINKLTSVIENGQCKLMKSQIKEGKQVSFT--MYRLNKW----PYGAIGPCKILRISAGQSV 1138
            Y KRQ    WL THIW+AKR  ++ +WG+++ + P QK F+   +       ++G   +D SY  T+ +  K+N        +II KLT+   N +      + +EG QV F   +Y  N+         +GPC +  +    ++
Sbjct:  230 YTKRQKHFAWLPTHIWNAKRSHMMKRWGYQMVWAPTQKCFKLTHRLGGDTCSSDGALCMDSSYIGTIIVKDKSNDSEGDFLKSIIGKLTAERANLR------KYREG-QVLFQGLIYSFNEENGEDSTKPLGPCDVFWVQKDTAI 367

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Nematostella
Match: EDO39296 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAE7])

HSP 1 Score: 127.872 bits (320), Expect = 2.445e-30
Identity = 67/186 (36.02%), Postives = 100/186 (53.76%), Query Frame = 2

Query:  602 LQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKI-------------QRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQ--IKEGKQVSFTMYRLNKWPYGAIGPCKIL 1114
             Q  P  +RRRAASH  +R+P R R+ A    AK++             Q+K R   R+  NL   Y +RQ +  WL THIWHAKR K+V KWG+R+   P  K+F+   +A+T+ C + DISY+C  E+ GK   I++ +  +        M S+  + + K+    MY+  ++PY AIGP   +
Sbjct:   13 FQAPPKHMRRRAASHDVKRMPVRLREQA----AKEVKDCLHGLLQITTTQKKSRRQRRKTSNLMEEYSRRQRQHMWLETHIWHAKRMKMVEKWGYRLAENPTDKSFKAAHRAVTHNCLLQDISYYCCTEVTGKHEDIVSAMKRITSPDTGPSMASEQFLDKSKEGHTIMYQTEQYPYHAIGPVSFM 194

HSP 2 Score: 63.929 bits (154), Expect = 1.919e-10
Identity = 38/130 (29.23%), Postives = 66/130 (50.77%), Query Frame = 2

Query: 1631 IDGEKCAAMVTRVHYQDGKAAG---GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            ++G++    V  V     +  G   GW++++P+ W+M  W+ALV +G R  G R  AR  +LE        D      +PDT+SG    ++   + S  + + P AKR N+ +     PFS PW++++ +
Sbjct:  464 LEGQQSVVPVLLVQQPGVRGTGYGSGWDLILPSGWAMAFWIALVYRGARVGGLRE-ARSISLECERPHFPRD------FPDTSSGKEHDKAIETEGSAKYLKYPPAKRPNYAKLGVPCPFSYPWEQLVRE 586

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Nematostella
Match: EDO39382 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SA20])

HSP 1 Score: 117.087 bits (292), Expect = 1.005e-28
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 2

Query:  605 QRLPISLRRRAASHKTRRLPFRFRKLA--KAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSV 994
            Q  P  +RRRAASH  +R+P R R+ A  + +P    Q+K R   R+  NL   Y +RQ +  WL THIWHAKR K+V KWG+R+   P  K+F+   +A+T+ C + DISY+C  E+ GK   I++ +  +
Sbjct:   74 QAPPKHMRRRAASHDVKRMPVRLREQAAKEMIPKTTTQKKSRRQRRKTSNLMEEYSRRQRQHMWLETHIWHAKRMKMVEKWGYRLAENPTDKSFKAAHRAVTHNCLLQDISYYCCTEVTGKHEDIVSAMKRI 205

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Medaka
Match: pop1 (POP1 homolog, ribonuclease P/MRP subunit [Source:NCBI gene;Acc:101164338])

HSP 1 Score: 135.191 bits (339), Expect = 4.972e-32
Identity = 84/242 (34.71%), Postives = 124/242 (51.24%), Query Frame = 2

Query:  533 SHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQ--------------RKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVI--ENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKIL-RISAGQSVGSSFLLSFHTCCRDEVIQTISKI 1207
            S A E+K   K V   + S     Q LP  +RRRA SH T+RLP R R +A  +  K +Q              RK R   RR  NL   + +RQ K  WL THIWHAKRF +V KWG+R+   P  K +RPC +AM++ C ++DISY+C +EL G+ +T++  L+ +   E G        +   +Q S T+YR  ++P   +GP   L R  A  S      +  H   + +++  + ++
Sbjct:   76 SRAAEVKAMLKAVTKRTGSNHV-FQALPKHMRRRAMSHNTKRLPRRLRDVASKMREKSLQAGSKKKKELPKSKSRKAR---RRHGNLLLEFNRRQRKNIWLETHIWHAKRFHMVKKWGYRLGDRPTCKCYRPCYRAMSSHCLLLDISYYCCIELQGEEDTLLTALSQLTSKETGPTFAAALCLSGCRQGSVTVYRAGQYPSHPLGPVTFLWRPRAEGSASRQLWIWAHPALKQDLLPELQRV 313

HSP 2 Score: 62.7734 bits (151), Expect = 1.486e-9
Identity = 38/123 (30.89%), Postives = 59/123 (47.97%), Query Frame = 2

Query: 1673 YQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIF--GWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            +Q GK  G        GW++++P  W M  W+ LV +G R  G         L  S   +++   P F   +PD  +GV   E    +    +KRRP AKR N+ +    +PF CPWQ+++ +
Sbjct:  574 HQPGKQVGNDMSSWGAGWDLLLPKGWGMAFWVPLVYRGVRIAG---------LHMSLKRSQNQGAPHFPHDYPDCPAGVRFQEEQEAELLDKFKRRPPAKRTNYIKHGCLAPFRCPWQQLVEE 687

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Medaka
Match: pop1 (POP1 homolog, ribonuclease P/MRP subunit [Source:NCBI gene;Acc:101164338])

HSP 1 Score: 134.806 bits (338), Expect = 5.489e-32
Identity = 84/242 (34.71%), Postives = 124/242 (51.24%), Query Frame = 2

Query:  533 SHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQ--------------RKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVI--ENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKIL-RISAGQSVGSSFLLSFHTCCRDEVIQTISKI 1207
            S A E+K   K V   + S     Q LP  +RRRA SH T+RLP R R +A  +  K +Q              RK R   RR  NL   + +RQ K  WL THIWHAKRF +V KWG+R+   P  K +RPC +AM++ C ++DISY+C +EL G+ +T++  L+ +   E G        +   +Q S T+YR  ++P   +GP   L R  A  S      +  H   + +++  + ++
Sbjct:   83 SRAAEVKAMLKAVTKRTGSNHV-FQALPKHMRRRAMSHNTKRLPRRLRDVASKMREKSLQAGSKKKKELPKSKSRKAR---RRHGNLLLEFNRRQRKNIWLETHIWHAKRFHMVKKWGYRLGDRPTCKCYRPCYRAMSSHCLLLDISYYCCIELQGEEDTLLTALSQLTSKETGPTFAAALCLSGCRQGSVTVYRAGQYPSHPLGPVTFLWRPRAEGSASRQLWIWAHPALKQDLLPELQRV 320

HSP 2 Score: 62.7734 bits (151), Expect = 1.491e-9
Identity = 38/123 (30.89%), Postives = 59/123 (47.97%), Query Frame = 2

Query: 1673 YQDGKAAG--------GWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIF--GWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSD 2011
            +Q GK  G        GW++++P  W M  W+ LV +G R  G         L  S   +++   P F   +PD  +GV   E    +    +KRRP AKR N+ +    +PF CPWQ+++ +
Sbjct:  582 HQPGKQVGNDMSSWGAGWDLLLPKGWGMAFWVPLVYRGVRIAG---------LHMSLKRSQNQGAPHFPHDYPDCPAGVRFQEEQEAELLDKFKRRPPAKRTNYIKHGCLAPFRCPWQQLVEE 695

[Close]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Planmine SMEST
Match: SMESG000075448.1 (SMESG000075448.1)

HSP 1 Score: 1345.87 bits (3482), Expect = 0.000e+0
Identity = 648/648 (100.00%), Postives = 648/648 (100.00%), Query Frame = 2

Query:  491 MNTDKEFDFSTYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTVLARPLSEIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGEKCAAMVTRVHYQDGKAAGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSDSADHPFYVIRDINMLFRVVRQIFDGSVKPTVDELNQFLPDAQWALVPVNLESGSTIPSSNAVIMAANLDDDQQVVLEADKSLIRPVIGYLELADQSLAVGQGRGFGFVSLYQAVALCTLYRPLTQFVWFKNTNTTRFVAGK 2434
            MNTDKEFDFSTYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTVLARPLSEIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGEKCAAMVTRVHYQDGKAAGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSDSADHPFYVIRDINMLFRVVRQIFDGSVKPTVDELNQFLPDAQWALVPVNLESGSTIPSSNAVIMAANLDDDQQVVLEADKSLIRPVIGYLELADQSLAVGQGRGFGFVSLYQAVALCTLYRPLTQFVWFKNTNTTRFVAGK
Sbjct:    1 MNTDKEFDFSTYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAASHKTRRLPFRFRKLAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKWLYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFCTLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYGAIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCWTTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTVLARPLSEIASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSRFLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGEKCAAMVTRVHYQDGKAAGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDCFPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCPWQRILSDSADHPFYVIRDINMLFRVVRQIFDGSVKPTVDELNQFLPDAQWALVPVNLESGSTIPSSNAVIMAANLDDDQQVVLEADKSLIRPVIGYLELADQSLAVGQGRGFGFVSLYQAVALCTLYRPLTQFVWFKNTNTTRFVAGK 648

The following BLAST results are available for this feature:

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Human
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Celegans
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Fly
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Zebrafish
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Xenopus
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Mouse
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. UniProt/SwissProt
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Cavefish
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Sea Lamprey
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Yeast
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Nematostella
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Medaka
BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Planmine SMEST

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2


Match Name	E-value	Identity	Description
POP1	9.063e-45	26.16	POP1 homolog, ribonuclease P/MRP subunit [Source:H...	[more]
POP1	9.063e-45	26.16	POP1 homolog, ribonuclease P/MRP subunit [Source:H...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
C05D11.9	5.919e-20	30.77	pep chromosome:WBcel235:III:6427529:6430934:-1 gen...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
l(1)G0045	1.105e-25	35.63	gene:FBgn0026702 transcript:FBtr0070782	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
pop1	2.478e-26	32.70	POP1 homolog, ribonuclease P/MRP subunit [Source:Z...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
POP1	2.323e-31	36.45	POP1 homolog, ribonuclease P/MRP subunit [Source:N...	[more]
POP1	3.197e-31	36.45	POP1 homolog, ribonuclease P/MRP subunit [Source:N...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Pop1	8.108e-31	37.32	processing of precursor 1, ribonuclease P/MRP fami...	[more]
Pop1	8.376e-31	37.75	processing of precursor 1, ribonuclease P/MRP fami...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4


Match Name	E-value	Identity	Description
sp\|Q99575\|POP1_HUMAN	4.352e-44	26.16	Ribonucleases P/MRP protein subunit POP1 OS=Homo s...	[more]
sp\|Q11188\|YPD9_CAEEL	7.529e-19	30.77	Uncharacterized protein C05D11.9 OS=Caenorhabditis...	[more]
sp\|Q9UTA4\|POPI_SCHPO	2.601e-12	25.08	Ribonucleases P/MRP protein subunit pop1 OS=Schizo...	[more]
sp\|P41812\|POP1_YEAST	1.004e-6	28.97	Ribonucleases P/MRP protein subunit POP1 OS=Saccha...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1B0CL73	1.144e-49	26.81	Uncharacterized protein OS=Lutzomyia longipalpis O...	[more]
A0A5J4NVT6	1.439e-48	26.43	Ribonuclease P/MRP protein subunit POP1 OS=Paragon...	[more]
U3J445	2.893e-46	27.41	POP1 homolog, ribonuclease P/MRP subunit OS=Anas p...	[more]
R0L6X4	3.385e-45	27.32	Ribonucleases P/MRP protein subunit POP1 (Fragment...	[more]
A0A1B0DR33	5.841e-45	25.74	Uncharacterized protein OS=Phlebotomus papatasi OX...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
POP1	3.782e-26	30.74	POP1 homolog, ribonuclease P/MRP subunit [Source:N...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
POP1	2.694e-28	37.10	POP1 homolog, ribonuclease P/MRP subunit [Source:H...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
POP1	1.446e-8	28.97	Subunit of RNase MRP, nuclear RNase P and telomera...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO39296	2.445e-30	36.02	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39382	1.005e-28	41.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
pop1	4.972e-32	34.71	POP1 homolog, ribonuclease P/MRP subunit [Source:N...	[more]
pop1	5.489e-32	34.71	POP1 homolog, ribonuclease P/MRP subunit [Source:N...	[more]

BLAST of Ribonucleases P/MRP protein subunit POP1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000075448.1	0.000e+0	100.00	SMESG000075448.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30003472 ID=SMED30003472|Name=Ribonucleases P/MRP protein subunit POP1|organism=Schmidtea mediterranea sexual|type=transcript|length=2488bp
TTTTGTTTTAATTTTGGCTTTAAGCCCAAAACTTGGCTTACAACTTCCTC
TAATGACATTGGTTCAATTCTACTGTAGACTCTTAACTGATACGAAAAAT
CATTCGTCAGTCGTGTAATAAAAGCAATTTTCTACACCGCGTTTTCCTTT
AAACCAACTAAGCTAGTTAAGTTTCGAAGATCAGACAAATAACTATCCAC
TGGTTCACTCTGCCATCTTGATATCAATACCCCATACGCCTCATATTTAT
TCATTGCGAATGCATCATGGAGATCTGGTTTTATTGCCTTTAATGTCCTT
CTGAGGATGATTAAAGATGTTTAAAAATGCTTAAATTGTAAAGAGTTGCT
AGATGGTAATAATTGTTGGAAAATTTGATGTCTTAACAGTTTGGTATTAG
TGCAAAGTTAAAAAAATTGTATGGGATCTTGTATCTTTGAACGACTTGAT
TTTCAAATCCGAAATAATTTTAATAATTTTATTTGAATTTATGAATACAG
ATAAAGAATTTGACTTTTCTACATATTTAATAAGTCATGCTGAAGAATTA
AAACAATTTTCTAAAGATGTAAATATATTATCTTCATCTGCATTAACACA
GTTACAAAGATTACCCATTTCTCTCAGAAGGCGTGCTGCTAGTCACAAAA
CAAGACGATTACCTTTTCGTTTTAGAAAATTAGCCAAAGCTGTACCCGCA
AAAAAAATTCAAAGGAAATGCCGATATTACATTAGAAGACGCTTAAATTT
AAAAGCAGTATATTTAAAGCGTCAATTGAAAATAAAATGGTTGTACACTC
ATATTTGGCATGCGAAACGATTTAAAATTGTAAATAAATGGGGCTGGCGA
GTTCCTTATGAACCTGCTCAAAAAACATTTCGACCTTGTACAAAAGCAAT
GACAAATGGATGTTGTGTTGTGGATATCAGTTACTTTTGTACACTGGAGC
TGTTTGGAAAGGCAAATACAATTATCAACAAGCTGACGTCTGTTATTGAA
AATGGACAGTGTAAGTTGATGAAATCTCAAATTAAAGAAGGTAAACAAGT
CTCCTTCACAATGTATCGTTTGAATAAATGGCCATATGGTGCTATTGGTC
CCTGTAAAATTCTAAGGATCAGTGCCGGACAATCGGTCGGCTCATCGTTT
CTGTTATCGTTCCATACTTGCTGTCGAGATGAAGTAATCCAGACTATCAG
TAAGATATTTGCATTGCGTGACATTGGATCGAATTGTTGGACTACCGACT
CGGGAAAAGCTATCGTTCGTGACCGCAGCACGGAATTCTCTCGGTTCCGA
TTGATCGGCAGCCGGTCTCAGAATGTTGTCCATGGATTACTTGATGATGC
CAGCCCGTTCCGGACAGTTCTAGCGCGTCCACTAAGTGAGATTGCTTCCG
GGTACGCTTTCGAGACCGAGATTGAGGATCTGAAGAGTAAAAGGCCGGCA
TTGAAACAGACAGATATTGTTGGATTTGTCAGCTACGCCCGTGATTCAGT
TGCTGCTGTTCCGTTGAGGCAATTGGATGAGTGCTCACGATTCCTTACCA
ATCCCGATCTCATCGCTGCTATCAAGGATGATAGCCAATCCAGTCTGGAG
CAGCTGGTCAAATTCGATCTTGATCCGATAATCGATGGAGAGAAATGCGC
TGCCATGGTGACGAGGGTTCATTACCAAGACGGAAAGGCTGCTGGTGGAT
GGGAAATTGTTGTGCCAGCAAAGTGGAGTATGAAGATGTGGATGGCGCTG
GTTATGAAAGGATGTAGGCCAATAGGATATCGCTATTGGGCTCGCTACTG
CGCTCTGGAGGCAAGTTCATTGATGGCTAAACATGATTGCTTCCCAATAT
TCGGATGGCCAGACACAGCCAGTGGAGTGCTGGAATCGGAATCGTCACGG
GACAAGCAATCGTTGCTATGGAAGAGACGGCCATCAGCCAAGAGGATAAA
TTTCACCCGGTGCGTTACAGAGTCTCCATTCTCGTGTCCATGGCAACGCA
TACTGAGCGACAGTGCCGATCACCCTTTCTATGTGATCCGTGACATCAAT
ATGCTGTTCCGGGTTGTCAGGCAGATTTTTGACGGCTCTGTCAAACCGAC
TGTCGATGAGTTGAATCAATTCCTTCCCGATGCTCAATGGGCATTAGTGC
CAGTCAATCTCGAGTCAGGCTCGACTATACCCTCCTCAAATGCCGTTATT
ATGGCAGCTAATCTCGATGATGATCAGCAAGTTGTGCTGGAGGCTGACAA
ATCACTAATCCGACCGGTAATTGGATATCTGGAACTGGCCGATCAATCAT
TGGCTGTTGGGCAAGGCCGTGGATTCGGGTTTGTGTCCTTGTATCAAGCA
GTCGCTCTGTGCACATTATATCGTCCACTCACTCAATTCGTCTGGTTCAA
GAACACGAATACCACACGGTTTGTTGCTGGGAAGCTTTCCCTCTCCATTT
AGGGTTTCCTGTTGTGAATAAATGATTATTTCCCTGCA

protein sequence of SMED30003472-orf-1

>SMED30003472-orf-1 ID=SMED30003472-orf-1|Name=SMED30003472-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=654bp
MNTDKEFDFSTYLISHAEELKQFSKDVNILSSSALTQLQRLPISLRRRAA
SHKTRRLPFRFRKLAKAVPAKKIQRKCRYYIRRRLNLKAVYLKRQLKIKW
LYTHIWHAKRFKIVNKWGWRVPYEPAQKTFRPCTKAMTNGCCVVDISYFC
TLELFGKANTIINKLTSVIENGQCKLMKSQIKEGKQVSFTMYRLNKWPYG
AIGPCKILRISAGQSVGSSFLLSFHTCCRDEVIQTISKIFALRDIGSNCW
TTDSGKAIVRDRSTEFSRFRLIGSRSQNVVHGLLDDASPFRTVLARPLSE
IASGYAFETEIEDLKSKRPALKQTDIVGFVSYARDSVAAVPLRQLDECSR
FLTNPDLIAAIKDDSQSSLEQLVKFDLDPIIDGEKCAAMVTRVHYQDGKA
AGGWEIVVPAKWSMKMWMALVMKGCRPIGYRYWARYCALEASSLMAKHDC
FPIFGWPDTASGVLESESSRDKQSLLWKRRPSAKRINFTRCVTESPFSCP
WQRILSDSADHPFYVIRDINMLFRVVRQIFDGSVKPTVDELNQFLPDAQW
ALVPVNLESGSTIPSSNAVIMAANLDDDQQVVLEADKSLIRPVIGYLELA
DQSLAVGQGRGFGFVSLYQAVALCTLYRPLTQFVWFKNTNTTRFVAGKLS
LSI*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0000172	ribonuclease MRP complex
GO:0005655	nucleolar ribonuclease P complex

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR039182	Pop1
IPR009723	Pop1_N
IPR027266	TrmE/GcvT_dom1
IPR012590	POPLD_dom

Vocabulary: **molecular function**
Term	Definition
GO:0004526	ribonuclease P activity
GO:0005515	protein binding

Vocabulary: **biological process**
Term	Definition
GO:0001682	tRNA 5'-leader removal
GO:0006396	RNA processing
GO:0090501	RNA phosphodiester bond hydrolysis
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012590	POPLD domain	PFAM	PF08170	POPLD	coord: 403..501 e-value: 9.6E-19 score: 67.5
IPR009723	Pop1, N-terminal	PFAM	PF06978	POP1	coord: 13..67 e-value: 2.4E-6 score: 27.7 coord: 87..155 e-value: 1.2E-20 score: 74.4
IPR039182	Ribonucleases P/MRP protein subunit Pop1	PANTHER	PTHR22731	RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1	coord: 6..623
None	No IPR available	SUPERFAMILY	SSF103025	Folate-binding domain	coord: 99..435