60S ribosomal protein L23

Overview
Name60S ribosomal protein L23
Smed IDSMED30003442
Length (bp)667
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L23 (SMED30003442) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L23 (SMED30003442) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L23 (SMED30003442) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L23 (SMED30003442) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30003442

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30003442h1SMcG0022068 SmedASXL_018681SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30003442h1SMcG0022068 dd_Smed_v4_242_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30003442h1SMcG0022068 dd_Smed_v6_242_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Human
Match: RPL23 (ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316])

HSP 1 Score: 206.838 bits (525), Expect = 5.242e-68
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Human
Match: RPL23 (ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316])

HSP 1 Score: 206.838 bits (525), Expect = 5.242e-68
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Human
Match: RPL23 (ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316])

HSP 1 Score: 161.77 bits (408), Expect = 1.309e-50
Identity = 92/114 (80.70%), Postives = 100/114 (87.72%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKG 391
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKG
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKG 114
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Human
Match: RPL23 (ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316])

HSP 1 Score: 132.494 bits (332), Expect = 1.150e-39
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 2 
Query:  227 MVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 81
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Human
Match: RPL23 (ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316])

HSP 1 Score: 114.775 bits (286), Expect = 1.514e-32
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRK 307
            ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK
Sbjct:   20 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRK 90
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Celegans
Match: rpl-23 (60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P48158])

HSP 1 Score: 216.853 bits (551), Expect = 1.707e-72
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I++ A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Celegans
Match: rpl-23 (60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P48158])

HSP 1 Score: 216.853 bits (551), Expect = 1.707e-72
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I++ A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Celegans
Match: rpl-23 (60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P48158])

HSP 1 Score: 216.853 bits (551), Expect = 1.707e-72
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I++ A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Fly
Match: RpL23 (gene:FBgn0010078 transcript:FBtr0071897)

HSP 1 Score: 204.142 bits (518), Expect = 2.936e-67
Identity = 108/140 (77.14%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG +GG+FRISLGLPV AV+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+  VVIRQRK ++R+DG  I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Zebrafish
Match: rpl23 (ribosomal protein L23 [Source:NCBI gene;Acc:336812])

HSP 1 Score: 205.682 bits (522), Expect = 9.732e-68
Identity = 112/140 (80.00%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Xenopus
Match: rpl23 (ribosomal protein L23 [Source:NCBI gene;Acc:496667])

HSP 1 Score: 205.297 bits (521), Expect = 1.498e-67
Identity = 101/125 (80.80%), Postives = 110/125 (88.00%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:   11 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 135
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Xenopus
Match: rpl23 (ribosomal protein L23 [Source:NCBI gene;Acc:496667])

HSP 1 Score: 132.494 bits (332), Expect = 1.042e-39
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 2 
Query:  227 MVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 81
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Mouse
Match: Rpl23 (ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455])

HSP 1 Score: 206.838 bits (525), Expect = 3.599e-68
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Mouse
Match: Rpl23 (ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455])

HSP 1 Score: 64.3142 bits (155), Expect = 1.460e-13
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRL 205
            ISLGLPV AVINCADN+GAKN+YIISV G K RLNRL
Sbjct:   24 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRL 60
[Close]
BLAST of 60S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|P48158|RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans OX=6239 GN=rpl-23 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.171e-71
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I++ A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|P62832|RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus OX=10116 GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.517e-67
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|P62831|RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa OX=9823 GN=RPL23 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.517e-67
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|P62830|RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus OX=10090 GN=Rpl23 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.517e-67
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|Q90YU5|RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus OX=7998 GN=rpl23 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 2.517e-67
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. TrEMBL
Match: A0A0B4N690 (Large subunit ribosomal protein 23 (Fragment) OS=Leptojacobus dorci OX=1463561 GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.632e-70
Identity = 116/140 (82.86%), Postives = 131/140 (93.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AV+NCADN+GAKN+++I+V+G K RLNRLP+AAVGDM VCSVKKGKPELRKKVLQGVV+RQRK+++RKDGT I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WPKI+S A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGRLNRLPSAAVGDMFVCSVKKGKPELRKKVLQGVVVRQRKMFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPKIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. TrEMBL
Match: A0A0N4UED9 (Uncharacterized protein OS=Dracunculus medinensis OX=318479 GN=DME_LOCUS9333 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.586e-70
Identity = 117/152 (76.97%), Postives = 135/152 (88.82%), Query Frame = 2 
Query:   14 IFVLIYNINF*KMSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            +F+LI   +F KMSKRGRGGASG +FR+SLGLPV AVINCADN+GAKN+++I+VFG + RLNRLP+A VGDM V SVKKGKPELRKKVLQ VV+RQRK Y+RKDGT I FEDNAGVIVNNKGEMKGSAITGP+AKECAD+WP+I+S A SIA
Sbjct:    9 VFLLIKRFHF-KMSKRGRGGASGAKFRVSLGLPVGAVINCADNTGAKNLFVIAVFGIRGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPIAKECADLWPRIASNAGSIA 159
[Close]
BLAST of 60S ribosomal protein L23 vs. TrEMBL
Match: A0A024CIU1 (Large subunit ribosomal protein 23 (Fragment) OS=Micoletzkya sp. 18 VS-2014 OX=1498102 GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.385e-69
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            ISLGLPV AV+NCADNSGAKN+++I+V+G + RLNRLPAA VGDM VCSVKKGKPELRKKVLQGVVIRQRK Y+RKDG+ I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:   11 ISLGLPVGAVMNCADNSGAKNLFVIAVYGIRGRLNRLPAAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQYRRKDGSFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 135
[Close]
BLAST of 60S ribosomal protein L23 vs. TrEMBL
Match: A0A1D1W333 (Uncharacterized protein OS=Ramazzottius varieornatus OX=947166 GN=RvY_16524-1 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.582e-69
Identity = 116/140 (82.86%), Postives = 130/140 (92.86%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AVINCADN+GAKN+YII+V G KSRLNRLPAAAVGDM++C+VKKGKPELRKKV+QGVVIRQRK ++RKDG  I FEDNAGVIVNNKGEMKGSAITGPVAKECA++WP+I+S A SIA
Sbjct:    1 MSKRGRGGASGSKFRISLGLPVGAVINCADNTGAKNLYIIAVGGIKSRLNRLPAAAVGDMIICTVKKGKPELRKKVMQGVVIRQRKAFRRKDGMFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAELWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. TrEMBL
Match: A0A261AWD0 (Uncharacterized protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_18494 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.435e-69
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I++ A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Cavefish
Match: rpl23 (ribosomal protein L23 [Source:NCBI gene;Acc:103027040])

HSP 1 Score: 182.956 bits (463), Expect = 5.777e-59
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPEL+KKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELKKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Sea Lamprey
Match: rpl23 (ribosomal protein L23 [Source:NCBI gene;Acc:336812])

HSP 1 Score: 204.142 bits (518), Expect = 6.209e-68
Identity = 111/140 (79.29%), Postives = 123/140 (87.86%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+G KN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK ++RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGGKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKAFRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Yeast
Match: RPL23A (Ribosomal 60S subunit protein L23A; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23A has a paralog, RPL23B, that arose from the whole genome duplication [Source:SGD;Acc:S000000183])

HSP 1 Score: 185.267 bits (469), Expect = 8.100e-61
Identity = 84/119 (70.59%), Postives = 105/119 (88.24%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISS 451
            ISLGLPV A++NCADNSGA+N+YII+V G+ SRLNRLPAA++GDMV+ +VKKGKPELRKKV+  +V+RQ K ++R+DG  + FEDNAGVI N KGEMKGSAITGPV KECAD+WP+++S
Sbjct:   13 ISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVAS 131
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Yeast
Match: RPL23B (Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication [Source:SGD;Acc:S000000919])

HSP 1 Score: 185.267 bits (469), Expect = 8.100e-61
Identity = 84/119 (70.59%), Postives = 105/119 (88.24%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISS 451
            ISLGLPV A++NCADNSGA+N+YII+V G+ SRLNRLPAA++GDMV+ +VKKGKPELRKKV+  +V+RQ K ++R+DG  + FEDNAGVI N KGEMKGSAITGPV KECAD+WP+++S
Sbjct:   13 ISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVAS 131
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Nematostella
Match: EDO44819 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUW3])

HSP 1 Score: 195.667 bits (496), Expect = 2.245e-64
Identity = 95/124 (76.61%), Postives = 108/124 (87.10%), Query Frame = 2 
Query:   95 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSI 466
            I+LGLPV AVINCADN+G KN+YII+V G K RLNRLPAAA GDMV+ +VKKGKPELRKKV+  VVIRQRK Y+RK+G  + FEDNAGVIVN KGEMKGSAITGPVAKECAD+WP+I+S A SI
Sbjct:   12 IALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEDNAGVIVNVKGEMKGSAITGPVAKECADLWPRIASNAGSI 135
[Close]
BLAST of 60S ribosomal protein L23 vs. Ensembl Medaka
Match: rpl23 (ribosomal protein L23 [Source:NCBI gene;Acc:101155583])

HSP 1 Score: 206.838 bits (525), Expect = 2.808e-68
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQRK Y+RKDG  + FEDNAGVIVNNKGEMKGSAITGPVAKECAD+WP+I+S A SIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of 60S ribosomal protein L23 vs. Planmine SMEST
Match: SMESG000023040.1 (SMESG000023040.1)

HSP 1 Score: 252.677 bits (644), Expect = 1.371e-86
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 2 
Query:   50 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 469
            MSKRGRGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA
Sbjct:    1 MSKRGRGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFEDNAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA 140
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L23 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPL235.242e-6880.71ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL235.242e-6880.71ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL231.309e-5080.70ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL231.150e-3979.01ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL231.514e-3281.69ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl-231.707e-7281.4360S ribosomal protein L23 [Source:UniProtKB/Swiss... [more]
rpl-231.707e-7281.4360S ribosomal protein L23 [Source:UniProtKB/Swiss... [more]
rpl-231.707e-7281.4360S ribosomal protein L23 [Source:UniProtKB/Swiss... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RpL232.936e-6777.14gene:FBgn0010078 transcript:FBtr0071897[more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl239.732e-6880.00ribosomal protein L23 [Source:NCBI gene;Acc:336812... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl231.498e-6780.80ribosomal protein L23 [Source:NCBI gene;Acc:496667... [more]
rpl231.042e-3979.01ribosomal protein L23 [Source:NCBI gene;Acc:496667... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rpl233.599e-6880.71ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1... [more]
Rpl231.460e-1383.78ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1... [more]
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BLAST of 60S ribosomal protein L23 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P48158|RL23_CAEEL2.171e-7181.4360S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
sp|P62832|RL23_RAT2.517e-6780.7160S ribosomal protein L23 OS=Rattus norvegicus OX=... [more]
sp|P62831|RL23_PIG2.517e-6780.7160S ribosomal protein L23 OS=Sus scrofa OX=9823 GN... [more]
sp|P62830|RL23_MOUSE2.517e-6780.7160S ribosomal protein L23 OS=Mus musculus OX=10090... [more]
sp|Q90YU5|RL23_ICTPU2.517e-6780.7160S ribosomal protein L23 OS=Ictalurus punctatus O... [more]
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BLAST of 60S ribosomal protein L23 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0B4N6901.632e-7082.86Large subunit ribosomal protein 23 (Fragment) OS=L... [more]
A0A0N4UED94.586e-7076.97Uncharacterized protein OS=Dracunculus medinensis ... [more]
A0A024CIU14.385e-6982.40Large subunit ribosomal protein 23 (Fragment) OS=M... [more]
A0A1D1W3335.582e-6982.86Uncharacterized protein OS=Ramazzottius varieornat... [more]
A0A261AWD06.435e-6981.43Uncharacterized protein (Fragment) OS=Caenorhabdit... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl235.777e-5980.71ribosomal protein L23 [Source:NCBI gene;Acc:103027... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl236.209e-6879.29ribosomal protein L23 [Source:NCBI gene;Acc:336812... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL23A8.100e-6170.59Ribosomal 60S subunit protein L23A; homologous to ... [more]
RPL23B8.100e-6170.59Ribosomal 60S subunit protein L23B; homologous to ... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO448192.245e-6476.61Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 60S ribosomal protein L23 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl232.808e-6880.71ribosomal protein L23 [Source:NCBI gene;Acc:101155... [more]
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BLAST of 60S ribosomal protein L23 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000023040.11.371e-86100.00SMESG000023040.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003442 ID=SMED30003442|Name=60S ribosomal protein L23|organism=Schmidtea mediterranea sexual|type=transcript|length=667bp
GTTATTTGTTTAAATATTTGTATTGATATATAATATTAACTTTTGAAAAA
TGTCTAAAAGAGGACGTGGAGGAGCATCTGGAGGACGATTTAGAATTTCA
TTGGGTTTGCCAGTAGCAGCAGTTATTAACTGTGCTGACAACTCTGGTGC
TAAAAACATGTACATTATCAGTGTTTTTGGAACCAAATCTCGATTGAACA
GATTACCAGCTGCCGCTGTTGGAGACATGGTTGTTTGCTCAGTTAAAAAG
GGAAAGCCAGAACTAAGAAAGAAAGTTTTACAAGGTGTTGTAATTCGACA
AAGAAAGTTATATAAGCGCAAAGATGGCACAATTATTCAGTTTGAAGATA
ATGCTGGAGTTATTGTTAATAACAAGGGTGAAATGAAAGGTTCTGCTATT
ACTGGTCCAGTAGCTAAAGAATGTGCAGATATGTGGCCAAAGATTTCTTC
TGCTGCACCATCAATTGCATAAATGAATAAAATTTAGTGGATCTTTTGCG
TTATTTTTAGGTTATTACAACATGTTTATAAGGATTGTAACACCGATTCT
ACTGTTTTGTAATTTCAAGGTATATCTAATATTAAAAAGTTTTTCATATC
ATAAGTTTTTAATCAATTGAATTGCTGCACCTAAAAATCTATGTTAGAAA
GTGGAATGCTAATGGAA
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protein sequence of SMED30003442-orf-1

>SMED30003442-orf-1 ID=SMED30003442-orf-1|Name=SMED30003442-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=141bp
MSKRGRGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLN
RLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTIIQFED
NAGVIVNNKGEMKGSAITGPVAKECADMWPKISSAAPSIA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR036853Ribosomal_L14_sf
IPR000218Ribosomal_L14P
IPR019972Ribosomal_L14P_CS
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0022625cytosolic large ribosomal subunit
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0070180large ribosomal subunit rRNA binding
Vocabulary: biological process
TermDefinition
GO:0006412translation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 19..140
e-value: 1.8E-59
score: 213.6
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 22..139
e-value: 1.8E-38
score: 131.4
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 2..140
IPR036853Ribosomal protein L14 superfamilyGENE3DG3DSA:2.40.150.20coord: 1..140
e-value: 2.4E-67
score: 226.9
IPR036853Ribosomal protein L14 superfamilySUPERFAMILYSSF50193Ribosomal protein L14coord: 11..139
NoneNo IPR availablePANTHERPTHR11761:SF2260S RIBOSOMAL PROTEIN L23coord: 2..140
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 79..105