SMED30003218
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30003218 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Alignments
SMED30003218 aligns in the following genomic locations:
Homology
BLAST of SMED30003218 vs. Ensembl Human
Match: FBXL2 (F-box and leucine rich repeat protein 2 [Source:HGNC Symbol;Acc:HGNC:13598]) HSP 1 Score: 59.3066 bits (142), Expect = 9.492e-9 Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LKG+S R L+ L+L C +T + ++ + L ++G ++ D+ LK I N ++ +NL S S ITDEG++ +L+ L L CS +T+ ++ L + CP +Q + C H+ Sbjct: 146 SSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHL 273
BLAST of SMED30003218 vs. Ensembl Zebrafish
Match: fbxl2 (F-box and leucine-rich repeat protein 2 [Source:ZFIN;Acc:ZDB-GENE-030925-12]) HSP 1 Score: 50.0618 bits (118), Expect = 5.421e-6 Identity = 34/128 (26.56%), Postives = 63/128 (49.22%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LK LS R L+ L+L C +T + + + LF++G +++D LK + ++ IN+ S + ITD+G + KL+ + + CS IT+ ++ L + C ++ + C HV Sbjct: 155 HALKALSEGCRMLENLNLSWCDQITSDGIEALSRGCTALRALFLRGCTQLDDTALKHLQKHCPELMTINMQSCTQITDDGFVSLCRGCHKLQMVCISGCSNITDASLTALGLNCQRLKILEAARCSHV 282
BLAST of SMED30003218 vs. Ensembl Mouse
Match: Fbxl2 (F-box and leucine-rich repeat protein 2 [Source:MGI Symbol;Acc:MGI:1919429]) HSP 1 Score: 57.3806 bits (137), Expect = 3.108e-8 Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LKG+S R L+ L+L C +T + ++ + L ++G ++ D+ LK I N ++ +NL S S ITD+G++ +L+ L L CS +T+ ++ L + CP +Q + C H+ Sbjct: 146 SSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHL 273
BLAST of SMED30003218 vs. Ensembl Mouse
Match: Fbxl2 (F-box and leucine-rich repeat protein 2 [Source:MGI Symbol;Acc:MGI:1919429]) HSP 1 Score: 57.3806 bits (137), Expect = 3.108e-8 Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LKG+S R L+ L+L C +T + ++ + L ++G ++ D+ LK I N ++ +NL S S ITD+G++ +L+ L L CS +T+ ++ L + CP +Q + C H+ Sbjct: 146 SSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHL 273
BLAST of SMED30003218 vs. UniProt/SwissProt
Match: sp|Q5R3Z8|FBXL2_PONAB (F-box/LRR-repeat protein 2 OS=Pongo abelii OX=9601 GN=FBXL2 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.363e-8 Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LKG+S R L+ L+L C +T + ++ + L ++G ++ D+ LK I N ++ +NL S S ITDEG++ +L+ L L CS +T+ ++ L + CP +Q + C H+ Sbjct: 146 SSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHL 273
BLAST of SMED30003218 vs. UniProt/SwissProt
Match: sp|Q9UKC9|FBXL2_HUMAN (F-box/LRR-repeat protein 2 OS=Homo sapiens OX=9606 GN=FBXL2 PE=1 SV=3) HSP 1 Score: 59.3066 bits (142), Expect = 4.558e-8 Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LKG+S R L+ L+L C +T + ++ + L ++G ++ D+ LK I N ++ +NL S S ITDEG++ +L+ L L CS +T+ ++ L + CP +Q + C H+ Sbjct: 146 SSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHL 273
BLAST of SMED30003218 vs. UniProt/SwissProt
Match: sp|Q8BH16|FBXL2_MOUSE (F-box/LRR-repeat protein 2 OS=Mus musculus OX=10090 GN=Fbxl2 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 2.174e-7 Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LKG+S R L+ L+L C +T + ++ + L ++G ++ D+ LK I N ++ +NL S S ITD+G++ +L+ L L CS +T+ ++ L + CP +Q + C H+ Sbjct: 146 SSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHL 273
BLAST of SMED30003218 vs. TrEMBL
Match: A0A2C9JQ68 (F-box domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106063429 PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.184e-8 Identity = 81/294 (27.55%), Postives = 135/294 (45.92%), Query Frame = 1 Query: 76 MNSLPIEILTKISNYLSFSDRKSFALVCLRFNQAIYFKELWQNVTFVIGKAISMKIDTHFL-VILTNIKFFQ---LNIVPQELSEILKYTKNLLNLDLVICPNLFLNTENIDYYFRKHIDIDVKSVLMNLKGLSLSGNKTTLTNIGFNCFVENCCSLKKIDLSELDIGSLENIWNWSLDEIDLYSEKKWKFNKFLGNISEKSDRLSFSNIISKLISLVGYLEDINFCSTPIGHDELFILSTMPRLKLRVIRLDNCKNLDIKAINSLFHFQSHSLE--EISFINTFPVTINWFVS 939 MN LP E+++ I YL+F+DRK +LV + A L +NV + L LT+I F + +I L +ILK L+ LDL C +LF + ++ +HI ++ L+NLK L L+G + +T++ F V C +L++I L+ +I I+ L ++ S ++F+ FL + + + G ++ I+ T + +D L L+++ L L I L NC L K + L Q HSL+ +IS T +F + Sbjct: 1 MNYLPSELISHIMGYLNFNDRKEASLVNKAWYLAYLHPSLQRNVVVKCKPPEKGSLPQGLLRRRLTHIDFGEGRSESINEDSLIQILKECPGLMELDLSGCNHLFFSGRFLERESDRHI---LRKTLLNLKELKLTGLR-QMTDMTFLRLVSVCENLERISLASTNI-----IFGNQLSGLNQISPVIFQFSTFLKFVKD----------------IAGQIKSIDLSYTTVPNDALDALASIKGLVLDEIVLKNCTELSDKGVKFLVTKQ-HSLKILDISECRELGTTKAFFAT 268
BLAST of SMED30003218 vs. TrEMBL
Match: E2LQF7 (F-box domain-containing protein OS=Moniliophthora perniciosa (strain FA553 / isolate CP02) OX=554373 GN=MPER_09163 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.262e-7 Identity = 33/114 (28.95%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 1351 RLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSG-SSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNC 1689 RL+ L+L+GC +L+ LS L S + + + GV +D+ + + +++R+++ INL G +++DEG+ + LR+++L +T+K VS L CP + ++ + +C Sbjct: 151 RLERLTLVGCSDLSTSTLSRVLPSFPNLVAIDLTGVENTSDKAIIGLASVARRLQGINLGGCKNVSDEGVFALAKNCPLLRRVKLSGLETLTDKPVSTLAKSCPLLLEIDLNSC 264
BLAST of SMED30003218 vs. TrEMBL
Match: A0A0W0EZC0 (F-box domain-containing protein OS=Moniliophthora roreri OX=221103 GN=WG66_18015 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 4.985e-7 Identity = 38/130 (29.23%), Postives = 72/130 (55.38%), Query Frame = 1 Query: 1336 LSSFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSG-SSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNC----DHVERPI 1710 LS RL+ L+L+GC +L+ LS L S + + + GV +D+ + + +++++++ INL G +++ EG+ + LR+++L +T+K VS L CPF+ ++ + +C DH R I Sbjct: 146 LSKCDRLERLTLVGCSDLSTNTLSRVLPSFPNLVAIDLTGVENTSDKAIIGLASVAKRLQGINLGGCKNVSGEGVFALAKNCPLLRRVKLSGLETLTDKPVSALAKSCPFLLEIDLNSCKLITDHAIRDI 275
BLAST of SMED30003218 vs. TrEMBL
Match: V2YRY5 (Scf e3 ubiquitin ligase complex f-box protein grra OS=Moniliophthora roreri (strain MCA 2997) OX=1381753 GN=Moror_8087 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.204e-7 Identity = 38/130 (29.23%), Postives = 72/130 (55.38%), Query Frame = 1 Query: 1336 LSSFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSG-SSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNC----DHVERPI 1710 LS RL+ L+L+GC +L+ LS L S + + + GV +D+ + + +++++++ INL G +++ EG+ + LR+++L +T+K VS L CPF+ ++ + +C DH R I Sbjct: 146 LSKCDRLERLTLVGCSDLSTNTLSRVLPSFPNLVAIDLTGVENTSDKAIIGLASVAKRLQGINLGGCKNVSGEGVFALAKNCPLLRRVKLSGLETLTDKPVSALAKSCPFLLEIDLNSCKLITDHAIRDI 275
BLAST of SMED30003218 vs. TrEMBL
Match: A0A2R6RZN1 (F-box domain-containing protein OS=Phlebia centrifuga OX=98765 GN=PHLCEN_2v1643 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 6.220e-7 Identity = 34/126 (26.98%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 1351 RLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSGS-SITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHVERPIVLNYY 1725 RL+ L+LI C +LT L+ L + L + GV + D+ + ++ + +++++ INL G +TD+G++ ++ LR+++L+ +IT++ VS L CP + ++ + NC + V + + Sbjct: 174 RLERLTLINCTSLTDSALTRVLPCCPNLVALDLTGVVETTDRVVVALASSTKRLQGINLCGCRKLTDKGVLALAANCPSLRRVKLNGVEQITDEAVSALAKSCPLLLEIDLNNCKKITDASVRDLW 299
BLAST of SMED30003218 vs. Ensembl Cavefish
Match: fbxl2 (F-box and leucine-rich repeat protein 2 [Source:ZFIN;Acc:ZDB-GENE-030925-12]) HSP 1 Score: 51.6026 bits (122), Expect = 1.618e-6 Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LK LS R L+ L+L C +T + + N + LF++G +++D LK + ++ IN+ S + ITDEG + KL+ + + CS IT+ ++ L + C ++ + C HV Sbjct: 143 HALKALSEGCRMLENLNLSWCDQITRDGIEALSRGCNGLKALFLRGCTQLDDTALKHLQKHCPELVTINMQSCTQITDEGFVSLCRGCHKLQMVCVSGCSNITDASLTALGLNCQRLKILEAARCSHV 270
BLAST of SMED30003218 vs. Ensembl Sea Lamprey
Match: amn1 (antagonist of mitotic exit network 1 homolog (S. cerevisiae) [Source:NCBI gene;Acc:751744]) HSP 1 Score: 48.1358 bits (113), Expect = 2.071e-6 Identity = 29/114 (25.44%), Postives = 56/114 (49.12%), Query Frame = 1 Query: 1354 LKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSGSSITDEGLIGFLSSAF--KLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNC 1689 L+ + L C LT + + S + L ++G ++ D L ++ S ++ IN + + +TDEG+I ++ A L ++ +D C +T+K V + CP I+ + C Sbjct: 114 LRDVELSQCTELTDRAIIKLAASCPQLWILNLRGCHRLGDASLHALGRASSSLQFINFAKTQVTDEGVIALVNGACSKSLEEVHMDHCPSLTDKAVEAVLKSCPQIKYLHFHEC 227
BLAST of SMED30003218 vs. Ensembl Nematostella
Match: EDO37271 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG89]) HSP 1 Score: 51.6026 bits (122), Expect = 8.327e-7 Identity = 29/112 (25.89%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 1309 GNRKNGLKGLSSFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVL 1644 G L+ L+S + L+ L+ C ++ L QS + ++ V + D+ ++++ + ++++S +T+EGL FL+S L++LR+ CSK+T+ L+ L Sbjct: 916 GVTDKALQSLASCKELEELNFSSCFQISDNGLVPLFQSCPRLLEVHVSSCYGVTDRSVQALAKSCPYLRDLDVSWCHVTNEGLEAFLTSPTSLKRLRIKCCSKVTDALIWKL 1027
BLAST of SMED30003218 vs. Ensembl Medaka
Match: fbxl2 (F-box/LRR-repeat protein 2 [Source:NCBI gene;Acc:101157070]) HSP 1 Score: 54.6842 bits (130), Expect = 1.807e-7 Identity = 38/128 (29.69%), Postives = 64/128 (50.00%), Query Frame = 1 Query: 1321 NGLKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 + LK LS R L+TL+L C +T + + + LF++G +++D LK ++ IN+ S + ITDEGL+ KL+ L + C IT+ ++ L + CP ++ + C HV Sbjct: 155 HSLKALSDGCRMLETLNLSWCDQITRDGIEALARGCMGLRALFLRGCTQLDDGALKHFQKHCPELTTINMQSCTQITDEGLVSLCRGCHKLQVLCVSGCGNITDASLTALGLNCPRLKILEAARCSHV 282
BLAST of SMED30003218 vs. Ensembl Medaka
Match: fbxl20 (F-box/LRR-repeat protein 20 [Source:NCBI gene;Acc:101160411]) HSP 1 Score: 49.6766 bits (117), Expect = 7.296e-6 Identity = 35/126 (27.78%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 1327 LKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 LK LS L+ L++ C +T + ++S + LF++G ++ D+ LK I ++ +NL + S ITDEGLI +L+ L + C+ IT+ ++ L CP ++ + + C + Sbjct: 161 LKALSEGCHSLEQLNISWCDQVTKDGIQALVRSCPGLKGLFLKGCTQLEDEALKQIGAYCPELVTLNLQTCSQITDEGLITICRGCHRLQSLCVSGCANITDAILHALGQNCPRLRILEVARCSQL 286
BLAST of SMED30003218 vs. Ensembl Medaka
Match: fbxl20 (F-box/LRR-repeat protein 20 [Source:NCBI gene;Acc:101160411]) HSP 1 Score: 49.6766 bits (117), Expect = 7.296e-6 Identity = 35/126 (27.78%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 1327 LKGLS-SFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINL-SGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHV 1698 LK LS L+ L++ C +T + ++S + LF++G ++ D+ LK I ++ +NL + S ITDEGLI +L+ L + C+ IT+ ++ L CP ++ + + C + Sbjct: 161 LKALSEGCHSLEQLNISWCDQVTKDGIQALVRSCPGLKGLFLKGCTQLEDEALKQIGAYCPELVTLNLQTCSQITDEGLITICRGCHRLQSLCVSGCANITDAILHALGQNCPRLRILEVARCSQL 286
BLAST of SMED30003218 vs. Planmine SMEST
Match: SMESG000027728.1 (SMESG000027728.1) HSP 1 Score: 966.837 bits (2498), Expect = 0.000e+0 Identity = 503/514 (97.86%), Postives = 507/514 (98.64%), Query Frame = 1 Query: 235 MKIDTHFLVILTNIKFFQLNIVPQELSEILKYTKNLLNLDLVICPNLFLNTENIDYYFRKHIDIDVKSVLMNLKGLSLSGNKTTLTNIGFNCFVENCCSLKKIDLSELDIGSLENIWNWSLDEIDLYSEKKWKFNKFLGNISEKSDRLSFSNIISKLISLVGYLEDINFCSTPIGHDELFILSTMPRLKLRVIRLDNCKNLDIKAINSLFHFQSHSLEEISFINTFPVTINWFVSNFINHNTLKRIRVRGTGQPELQLFENVRLHNIQISFIHLESCSIDDHFIDGLNQIKSIRKLYLLGCNFSKLEKNLLLMDELIELNFSRSYGFTFNDFVRSIFSLTXXXXXXXXXXXXXXXXXGGNRKNGLKGLSSFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHVERPIVLNYYDSMFLYQWHSENHDIRI 1776 MKIDTHFLVILTNIKFFQLNI+PQELSEILKYTKNLLNLDLVICPNLFLNTE IDYYFRKHIDIDVK VLMNLKGLSLSGNKTTLTNIGFNCFVENCCSLKKIDLSELDIGSL+NIWNWSLDEIDLYSEKKWKFNKFLGNISEKSDRLSFSNIISKLISLV YLEDINFCSTPIGHDELFILSTMPRLKLRVIRLDNCKNLDIKAINSL +FQSHSLEEISFINTFPVTINWFV NF NHNTLKRIRVRGTGQPELQLFENVRL NIQISFIHLESCSIDDHFIDGLNQIKSIRKLYL+GCNFSKLEKNLLLMDELIELNFSRSYGFTFNDFVRSIFSLTKIELLKLDWLKIDDDLIGGNRKNGLKGLSSFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHVERPIVLNYYDSMFLYQWHSENHDIRI Sbjct: 1 MKIDTHFLVILTNIKFFQLNIIPQELSEILKYTKNLLNLDLVICPNLFLNTEKIDYYFRKHIDIDVKRVLMNLKGLSLSGNKTTLTNIGFNCFVENCCSLKKIDLSELDIGSLDNIWNWSLDEIDLYSEKKWKFNKFLGNISEKSDRLSFSNIISKLISLVEYLEDINFCSTPIGHDELFILSTMPRLKLRVIRLDNCKNLDIKAINSLLYFQSHSLEEISFINTFPVTINWFVRNFFNHNTLKRIRVRGTGQPELQLFENVRLQNIQISFIHLESCSIDDHFIDGLNQIKSIRKLYLMGCNFSKLEKNLLLMDELIELNFSRSYGFTFNDFVRSIFSLTKIELLKLDWLKIDDDLIGGNRKNGLKGLSSFRRLKTLSLIGCGNLTGCVLSECLQSMNLMTKLFVQGVRKINDQFLKSIHNLSRQIEEINLSGSSITDEGLIGFLSSAFKLRKLRLDDCSKITEKLVSVLPVVCPFIQDVSMRNCDHVERPIVLNYYDSMFLYQWHSENHDIRI 514 The following BLAST results are available for this feature:
BLAST of SMED30003218 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of SMED30003218 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30003218 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30003218 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30003218 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30003218 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of SMED30003218 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of SMED30003218 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30003218 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30003218 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of SMED30003218 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30003218 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30003218 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of SMED30003218 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30003218 ID=SMED30003218|Name=SMED30003218|organism=Schmidtea mediterranea sexual|type=transcript|length=1785bpback to top protein sequence of SMED30003218-orf-1 >SMED30003218-orf-1 ID=SMED30003218-orf-1|Name=SMED30003218-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=568bp MNSLPIEILTKISNYLSFSDRKSFALVCLRFNQAIYFKELWQNVTFVIGKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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