Prominin (Prom) protein, putative

Overview
NameProminin (Prom) protein, putative
Smed IDSMED30003079
Length (bp)2892
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Prominin (Prom) protein, putative (SMED30003079) t-SNE clustered cells

Violin plots show distribution of expression levels for Prominin (Prom) protein, putative (SMED30003079) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Prominin (Prom) protein, putative (SMED30003079) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Prominin (Prom) protein, putative (SMED30003079) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30003079

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30003079h1SMcG0006729 Contig3501newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30003079h1SMcG0006729 Contig3501uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30003079h1SMcG0006729 Contig3501newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30003079h1SMcG0006729 Contig3501uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30003079h1SMcG0021289 Contig3501newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30003079h1SMcG0021289 Contig3501uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30003079h1SMcG0021289 Contig3501newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30003079h1SMcG0021289 Contig3501uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30003079h1SMcG0021289 PL08003A1E10smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
protonephridiaSMED30003079h1SMcG0021289 dd_Smed_v4_4461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30003079h1SMcG0021289 dd_Smed_v4_4461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30003079h1SMcG0021289 dd_Smed_v4_4461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30003079h1SMcG0021289 dd_Smed_v4_4461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30003079h1SMcG0021289 dd_Smed_v4_4461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30003079h1SMcG0021289 dd_Smed_v4_4461_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Prominin (Prom) protein, putative vs. Ensembl Xenopus
Match: ENSXETT00000004747.1 (prominin 3 [Source:NCBI gene;Acc:100488690])

HSP 1 Score: 65.4698 bits (158), Expect = 3.401e-10
Identity = 100/376 (26.60%), Postives = 180/376 (47.87%), Query Frame = 3 
Query: 1461 CNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAI--VDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQ-TNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-IQ-FDTTATLINSTL---LTNVKESLSLLKSQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIY-RITHVETESAAYNHAYM-SSNQFL 2558
            C    GG F MA+V FSF+F   ++LI  ++F++GG + T VC+    P  +Q     +DS   P L   N+     +N+++  +L   CQ   +L S L  +      +  Y+  T + D+   Q I   +N  +  IN    D     ++ V + + T+     +++L + +  +D+ SF +++++L  D +        +R + +++    N T  N + A   L+  +Q  + T+  I +TL   L N++E+ + + +Q       A  A  + L  + ++ ++  ++ L T    C   + +VNSA  I CV I+   N  W  +GW  LF+IP+II +VKL   Y R+   +     Y+   M +S QFL
Sbjct:  430 CASNSGGDFFMASVGFSFIFSWLLILIVAVLFVVGGNSYTLVCK----PWANQQLFTYLDSQTIPQL---NISHYIDTNVNI-STLYSDCQRDDSLWSTLNFNQKI--DLQKYLNITQYTDSV--QNIIDNTNITIKNINFLTTDQKDQIMRVVSSGVDTLNFTSFKSQLIRNITKIDLLSFADDLDKLANDSSLPENVTTELRTEASVLRRIDNYTKSNLIPAVDTLDTTVQTLEATSENIPATLNKTLANIEEAQAYIDTQTVGVIKNATTAYVNKLVDLFQSYVDWAIFTLRTNFARCGPVAKAVNSAQTIACVYIVDSVNAFWFSLGWCTLFLIPSIILSVKLAKHYRRMKSSDVYENEYDQMEMTTSRQFL 793
[Close]
BLAST of Prominin (Prom) protein, putative vs. Ensembl Xenopus
Match: ENSXETT00000002731.1 (prominin 3 [Source:NCBI gene;Acc:100488690])

HSP 1 Score: 63.5438 bits (153), Expect = 1.332e-9
Identity = 94/352 (26.70%), Postives = 170/352 (48.30%), Query Frame = 3 
Query: 1461 CNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAI--VDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQ-TNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-IQ-FDTTATLINSTL---LTNVKESLSLLKSQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYR 2492
            C    GG F MA+V FSF+F   ++LI  ++F++GG + T VC+    P  +Q     +DS   P L   N+     +N+++  +L   CQ   +L S L  +      +  Y+  T + D+   Q I   +N  +  IN    D     ++ V + + T+     +++L + +  +D+ SF +++++L  D +        +R + +++    N T  N + A   L+  +Q  + T+  I +TL   L N++E+ + + +Q       A  A  + L  + ++ ++  ++ L T    C   + +VNSA  I CV I+   N  W  +GW  LF+IP+II +VKL   YR
Sbjct:  430 CASNSGGDFFMASVGFSFIFSWLLILIVAVLFVVGGNSYTLVCK----PWANQQLFTYLDSQTIPQL---NISHYIDTNVNI-STLYSDCQRDDSLWSTLNFNQKI--DLQKYLNITQYTDSV--QNIIDNTNITIKNINFLTTDQKDQIMRVVSSGVDTLNFTSFKSQLIRNITKIDLLSFADDLDKLANDSSLPENVTTELRTEASVLRRIDNYTKSNLIPAVDTLDTTVQTLEATSENIPATLNKTLANIEEAQAYIDTQTVGVIKNATTAYVNKLVDLFQSYVDWAIFTLRTNFARCGPVAKAVNSAQTIACVYIVDSVNAFWFSLGWCTLFLIPSIILSVKLAKHYR 769
[Close]
BLAST of Prominin (Prom) protein, putative vs. Ensembl Xenopus
Match: ENSXETT00000002658.1 (prominin 3 [Source:NCBI gene;Acc:100488690])

HSP 1 Score: 63.5438 bits (153), Expect = 1.408e-9
Identity = 94/352 (26.70%), Postives = 170/352 (48.30%), Query Frame = 3 
Query: 1461 CNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAI--VDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQ-TNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-IQ-FDTTATLINSTL---LTNVKESLSLLKSQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYR 2492
            C    GG F MA+V FSF+F   ++LI  ++F++GG + T VC+    P  +Q     +DS   P L   N+     +N+++  +L   CQ   +L S L  +      +  Y+  T + D+   Q I   +N  +  IN    D     ++ V + + T+     +++L + +  +D+ SF +++++L  D +        +R + +++    N T  N + A   L+  +Q  + T+  I +TL   L N++E+ + + +Q       A  A  + L  + ++ ++  ++ L T    C   + +VNSA  I CV I+   N  W  +GW  LF+IP+II +VKL   YR
Sbjct:  430 CASNSGGDFFMASVGFSFIFSWLLILIVAVLFVVGGNSYTLVCK----PWANQQLFTYLDSQTIPQL---NISHYIDTNVNI-STLYSDCQRDDSLWSTLNFNQKI--DLQKYLNITQYTDSV--QNIIDNTNITIKNINFLTTDQKDQIMRVVSSGVDTLNFTSFKSQLIRNITKIDLLSFADDLDKLANDSSLPENVTTELRTEASVLRRIDNYTKSNLIPAVDTLDTTVQTLEATSENIPATLNKTLANIEEAQAYIDTQTVGVIKNATTAYVNKLVDLFQSYVDWAIFTLRTNFARCGPVAKAVNSAQTIACVYIVDSVNAFWFSLGWCTLFLIPSIILSVKLAKHYR 769
[Close]
BLAST of Prominin (Prom) protein, putative vs. Ensembl Xenopus
Match: prom1 (prominin 1 [Source:NCBI gene;Acc:100036621])

HSP 1 Score: 53.9138 bits (128), Expect = 1.609e-6
Identity = 99/373 (26.54%), Postives = 168/373 (45.04%), Query Frame = 3 
Query: 1461 CNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVN----LGPVSLSNISV---YQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQ--------LMLDLNKTNKNDV-AIRIQNAMVGFQPNVTAMNSLHASYLLNKIQFDTTATLINSTLLTNVKESLSLLK-------SQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKGASNSVNSAVNIF-CVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITHVE 2507
            C    GG FLMA V FSF+F   +MLI ++ FL GG     VC         + A+   + +PYL N      L  V   N SV   ++ +   C+ +  + +ALQI + F  ++  ++  N    +I+  I ++ N ++S I   D     N        +  I      +E+ K    VD+ +F N + +         + +  K + N +  I IQ  +V  + ++T +N   +  LL +  FD    +++  ++T V+ + +L+         Q S      ++         VK +I       F VAG CK  +N +++AV++F C  I+   N+ W G+G   + +IPAIIFA++L   YR    E
Sbjct:  487 CISNTGGNFLMAGVGFSFIFSWILMLIVLVTFLAGGNVEKLVCEPF-----QERALFKVLDTPYLINSQWKNYLSGVLYQNPSVNLTFEKVYSDCKENKGIFTALQIDNLF--NLNEFLNINMYIDEISSRIETL-NLDLSNIILLDEKGKRNLEDFSSTGIDEIDFDAFLSEVAKSNTKVDLLAFANELEENADLLPKGALGNALKGHANSIRTIHIQQ-VVPLEQSMTTLN--QSIKLLQRTSFDIEGKVLD--VITAVEAAQNLINNNASSVIKQESKKLMDEVIGYFIQYVQWVKDSI------AFDVAG-CKPVANVIDTAVDVFLCSYIVDSVNSFWFGLGGATVLLIPAIIFAIRLAKFYRRMDTE 839
[Close]
BLAST of Prominin (Prom) protein, putative vs. Ensembl Xenopus
Match: prom1 (prominin 1 [Source:NCBI gene;Acc:100036621])

HSP 1 Score: 51.2174 bits (121), Expect = 9.866e-6
Identity = 101/376 (26.86%), Postives = 167/376 (44.41%), Query Frame = 3 
Query: 1461 CNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVN----LGPVSLSNISV---YQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQ--------LMLDLNKTNKNDV-AIRIQNAMVGFQ--PNVTAMNSLHAS-YLLNKIQFDTTATLINSTLLTNVKESLSLLK-------SQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKGASNSVNSAVNIF-CVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITHVE 2507
            C    GG FLMA V FSF+F   +MLI ++ FL GG     VC         + A+   + +PYL N      L  V   N SV   ++ +   C+ +  + +ALQI + F  ++  ++  N    +I+  I ++ N ++S I   D     N        +  I      +E+ K    VD+ +F N + +         + +  K + N +  I IQ  +   Q    V A  +L+ S  LL +  FD    +++  ++T V+ + +L+         Q S      ++         VK +I       F VAG CK  +N +++AV++F C  I+   N+ W G+G   + +IPAIIFA++L   YR    E
Sbjct:  487 CISNTGGNFLMAGVGFSFIFSWILMLIVLVTFLAGGNVEKLVCEPF-----QERALFKVLDTPYLINSQWKNYLSGVLYQNPSVNLTFEKVYSDCKENKGIFTALQIDNLF--NLNEFLNINMYIDEISSRIETL-NLDLSNIILLDEKGKRNLEDFSSTGIDEIDFDAFLSEVAKSNTKVDLLAFANELEENADLLPKGALGNALKGHANSIRTIHIQQVVPLEQSMKYVKARTTLNQSIKLLQRTSFDIEGKVLD--VITAVEAAQNLINNNASSVIKQESKKLMDEVIGYFIQYVQWVKDSI------AFDVAG-CKPVANVIDTAVDVFLCSYIVDSVNSFWFGLGGATVLLIPAIIFAIRLAKFYRRMDTE 845
[Close]
BLAST of Prominin (Prom) protein, putative vs. TrEMBL
Match: A0A2C9KYI1 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106051632 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.083e-12
Identity = 122/422 (28.91%), Postives = 185/422 (43.84%), Query Frame = 3 
Query: 1446 EDASCCNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXL--MTIVSPQTQNELKKPVILVDVQSFVN-----NVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-----IQFD-TTATLINSTL------------LTNVKESLSLLKSQPSNAR-----NKA---ILAAADSLRSIVKATINQTLYGLFTVAGD----CKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITHVETESAAYNHAYMSSNQFLNKNGLEMIRMGRPQ 2600
            E A CCN G G  FLMA V F+FLF   +M+I  +MF +GG+A TEVCR      PS+   +DS    YL+       + SN S  +S+   CQN+  L +ALQ+                        I ++  Y     N TDL   IN +++   +L  +TI++ Q         +L+ +Q+F       N+     +LN  NKN   + + N           +     +  LNK     I+ D TT  L+ S +             TN+K S++ L SQ   A      NK+   ++  AD   S++  TINQT   + T   +    C   S+++ +  + FCV++L P N +W   GW L F +  +IFAV LT  YR+ H       Y   +   N   +    + I + RP+
Sbjct:   76 EGAPCCNTGTGSNFLMAGVGFTFLFYWILMIICTVMFAVGGIAYTEVCRNFDDHDPSKLKSIDSFAVDYLRR-EFYTDAPSNFSFVKSIQ-NCQNNQALYTALQLDQ----------------------IVNLDKYT----NITDLKKKINELKDQPIKLDNITIINDQ---------LLMKLQNFTQALEGINLTAYFTELNLLNKNLTVVPLTNLAKELGYIAGKVQDPSDADTLNKSAERLIELDQTTIPLMKSNVGELRTALFKLQNQTNLKNSVNKLISQLKAAEDSFNTNKSSLIVMQIADIAESVIN-TINQTANDVKTELKENLAHCAPLSSALYTFTDSFCVLLLNPVNALWFSFGWVLFFFLLCLIFAVLLTDQYRVQH------KYEKEFDDPNFMYSGAQADTIPLTRPK 453
[Close]
BLAST of Prominin (Prom) protein, putative vs. TrEMBL
Match: A0A2C9KYI2 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106051632 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.777e-12
Identity = 121/402 (30.10%), Postives = 179/402 (44.53%), Query Frame = 3 
Query: 1446 EDASCCNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXL--MTIVSPQTQNELKKPVILVDVQSFVN-----NVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-----IQFD-TTATLINSTL------------LTNVKESLSLLKSQPSNAR-----NKA---ILAAADSLRSIVKATINQTLYGLFTVAGD----CKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITH-VETESAAYNHAY 2537
            E A CCN G G  FLMA V F+FLF   +M+I  +MF +GG+A TEVCR      PS+   +DS    YL+       + SN S  +S+   CQN+  L +ALQ+                        I ++  Y     N TDL   IN +++   +L  +TI++ Q         +L+ +Q+F       N+     +LN  NKN   + + N           +     +  LNK     I+ D TT  L+ S +             TN+K S++ L SQ   A      NK+   ++  AD   S++  TINQT   + T   +    C   S+++ +  + FCV++L P N +W   GW L F +  +IFAV LT  YR+ H  E E    N  Y
Sbjct:   76 EGAPCCNTGTGSNFLMAGVGFTFLFYWILMIICTVMFAVGGIAYTEVCRNFDDHDPSKLKSIDSFAVDYLRR-EFYTDAPSNFSFVKSIQ-NCQNNQALYTALQLDQ----------------------IVNLDKYT----NITDLKKKINELKDQPIKLDNITIINDQ---------LLMKLQNFTQALEGINLTAYFTELNLLNKNLTVVPLTNLAKELGYIAGKVQDPSDADTLNKSAERLIELDQTTIPLMKSNVGELRTALFKLQNQTNLKNSVNKLISQLKAAEDSFNTNKSSLIVMQIADIAESVIN-TINQTANDVKTELKENLAHCAPLSSALYTFTDSFCVLLLNPVNALWFSFGWVLFFFLLCLIFAVLLTDQYRVQHKYEKEFDDPNFMY 439
[Close]
BLAST of Prominin (Prom) protein, putative vs. TrEMBL
Match: A0A2C9KYV8 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106051632 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.316e-11
Identity = 114/387 (29.46%), Postives = 174/387 (44.96%), Query Frame = 3 
Query: 1446 EDASCCNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVN-----NVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-----IQFD-TTATLINSTL------------LTNVKESLSLLKSQPSNAR-----NKA---ILAAADSLRSIVKATINQTLYGLFTVAGD----CKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITH 2501
            E A CCN G G  FLMA V F+FLF   +M+I  +MF +GG+A TEVCR      PS+   +DS    YL+       + SN S  +S+   CQN+  L +ALQ+    + ++  Y  TN  D  + + I  + +  +   N                  +TI++ Q         +L+ +Q+F       N+     +LN  NKN   + + N           +     +  LNK     I+ D TT  L+ S +             TN+K S++ L SQ   A      NK+   ++  AD   S++  TINQT   + T   +    C   S+++ +  + FCV++L P N +W   GW L F +  +IFAV LT  YR+ H
Sbjct:   76 EGAPCCNTGTGSNFLMAGVGFTFLFYWILMIICTVMFAVGGIAYTEVCRNFDDHDPSKLKSIDSFAVDYLRR-EFYTDAPSNFSFVKSIQ-NCQNNQALYTALQLDQ--IVNLDKY--TNITD--LKKKINELKDQPIKLDN------------------ITIINDQ---------LLMKLQNFTQALEGINLTAYFTELNLLNKNLTVVPLTNLAKELGYIAGKVQDPSDADTLNKSAERLIELDQTTIPLMKSNVGELRTALFKLQNQTNLKNSVNKLISQLKAAEDSFNTNKSSLIVMQIADIAESVIN-TINQTANDVKTELKENLAHCAPLSSALYTFTDSFCVLLLNPVNALWFSFGWVLFFFLLCLIFAVLLTDQYRVQH 426
[Close]
BLAST of Prominin (Prom) protein, putative vs. TrEMBL
Match: A0A2C9KYM2 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106051632 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.085e-10
Identity = 112/384 (29.17%), Postives = 173/384 (45.05%), Query Frame = 3 
Query: 1446 EDASCCNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQLMLD--LNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNK-----IQFD-TTATLINSTL------------LTNVKESLSLLKSQPSNAR-----NKA---ILAAADSLRSIVKATINQTLYGLFTVAGD----CKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITH 2501
            E A CCN G G  FLMA V F+FLF   +M+I  +MF +GG+A TEVCR      PS+   +DS    YL+       + SN S  +S+   CQN+  L +ALQ+    + ++  Y  TN  D  + + I  + +  +   N                  +TI++ Q         +L+ +Q+F   +  + L     + NKN   + + N           +     +  LNK     I+ D TT  L+ S +             TN+K S++ L SQ   A      NK+   ++  AD   S++  TINQT   + T   +    C   S+++ +  + FCV++L P N +W   GW L F +  +IFAV LT  YR+ H
Sbjct:   76 EGAPCCNTGTGSNFLMAGVGFTFLFYWILMIICTVMFAVGGIAYTEVCRNFDDHDPSKLKSIDSFAVDYLRR-EFYTDAPSNFSFVKSIQ-NCQNNQALYTALQLDQ--IVNLDKY--TNITD--LKKKINELKDQPIKLDN------------------ITIINDQ---------LLMKLQNFTQALEGINLTAYFTELNKNLTVVPLTNLAKELGYIAGKVQDPSDADTLNKSAERLIELDQTTIPLMKSNVGELRTALFKLQNQTNLKNSVNKLISQLKAAEDSFNTNKSSLIVMQIADIAESVIN-TINQTANDVKTELKENLAHCAPLSSALYTFTDSFCVLLLNPVNALWFSFGWVLFFFLLCLIFAVLLTDQYRVQH 423
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BLAST of Prominin (Prom) protein, putative vs. TrEMBL
Match: V4BDS2 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_156479 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.770e-10
Identity = 111/386 (28.76%), Postives = 182/386 (47.15%), Query Frame = 3 
Query: 1452 ASCCNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLK-NVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKK----PVILVDVQSFVNNVNQ-----LMLDLNKTNKNDVAI---RIQNAMVGFQPNVTAMNSLHASYLLNKIQFDTTATLINSTLL---TNVK-ESLSLLKSQPSNAR--NKAILAAADSLRSIVKATINQTLYGLFTV--------AGDCKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITHVETESAAYN 2528
            A+CCN G GG FLMA V FSF+F   +M+I +I+FL GG A TE CR      P+     ++++   L    NL   S +  S+ Q+L   C+ +  + +ALQ+ DSF+ +I  Y+  + +  QI+    +I+  NV   N                  +TI+ P+ + ++++     +  +D  SF   +N+      +++L K  +N  A    + +  +  F   +  M+      L+  ++ D T    N T L   +NVK E+ +L+K   S  +  N   +   +++ S V   I  TL    T         AG C+   +S+    + FCV++L P N  W  MGW L F IP+IIFAVKL+ +Y       E   ++
Sbjct:  398 AACCNTGVGGNFLMAGVAFSFVFSWILMIICLILFLAGGFAYTEACRYFVTHEPADLQPFENLVFQNLDFTKNLFNDSNAKFSIVQTLK-NCEENQAIYTALQL-DSFL-NINNYLNISSLYKQID----NIAKSNVDFNN------------------ITILIPELRQQIEEFGNAGLDKIDYDSFEAEINKNLTAIDLIELAKKLENKAASETGQFKQQLEEFAAKLRRMDK----ELVTPMKKDVTNLKGNLTHLKENSNVKPETEALVKGLESAEKKFNSEGVTEVNTMLSEVVNNIKNTLGNKTTDIKTMIKKDAGKCRPVYDSIYLMTDAFCVVVLYPMNGFWFSMGWCLFFFIPSIIFAVKLSTLYHREEEYVEEKGFD 754
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BLAST of Prominin (Prom) protein, putative vs. Planmine SMEST
Match: SMESG000062666.1 (SMESG000062666.1)

HSP 1 Score: 1295.03 bits (3350), Expect = 0.000e+0
Identity = 802/841 (95.36%), Postives = 809/841 (96.20%), Query Frame = 3 
Query:   93 MKIIILAIWAFIFCSNLQFTNAGSNLRTSFDQFRSLTNRFLNTIQPNNGSLNLTANLISNITGNYTNTDYKYYINLYWQXXXXXXXXXXXXXXXXXXXXXXXMXXXXXXXXXKQRGAKTEAVYNMKRKRIVXXXXXXXXXXXXXXGAIVAMASNFVFRDAFNNTNNDSDGNFLYNFNTTVAKFINYINSVRNNISGPGLNLIAQVAVTAPSLLSPISTVFIQNFRSGISFDSLLQNAYALTQTYVNLQTYSKNLSDIAGRHQPAANDFTAYLSNFNNSLSAELTSANCGNSTYCNAVLGQIPSLILGFNMSNINYVADISAVNVTNSYNVTNLNNSIGSIXXXXXXXXXDANSTFMNYINSFINNLNSTTQLMQLNNTINSSITVVINYINDFSKSLLATQLGNKTISDGVLYDYVTYVFYGXXXXXXXXXXXXXXXXXXXXXXXXXAPNFEDASC---CNKGKGGGFLMAAVTFSFLFGSXXXXXXXXXXXXXXXANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSXXXXXXXXXXXLMTIVSPQTQNELKKPVILVDVQSFVNNVNQLMLDLNKTNKNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNKIQFDTTATLINSTLLTNVKESLSLLKSQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITHVETESAAYNHAYMSSNQFLNKNGLEMIRMGRPQKI 2606
            MKIIILAIWAFIFCSNLQFTNAGSNLRTSFDQFRSLTN+FLNTIQPN GSLNLT NLISNITGNY NTDYKYYINLYWQPYVGYIILIIIGILFFVFFPLVGMCFCCCRVCCKQRGAKTEAVYNMKRKRIVFNIFLLIFTSLILIGAIVAMASNFVFRDAFNN+NNDSDGNFLYNFNTTVAKFINYINSVRNNISGPGLNLIAQVAVTAPSLLSPISTVFIQNFRSGISFDSLLQNAYALTQTYVNLQTYSKNLSDIAGRHQ AANDFTAYLSNFNNSLSAELTSANCGNS+ CNAVLGQIPSLILGFNMSNINYVADISAVNVTNSYNVTNLNNSIGSITNTVVNVTNDANSTFMNYINSFINNLNSTTQLMQLNNTINSSITVVINYINDFSKSLLATQLGNKTISDGVLYDYVTYVFYGFCVLISIILLVVLL              F    C   C  GKGGGFLMAAVTFSFLFG FIMLITMIMFLIGGLANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSNINNIQNVVNQLMTIVSPQTQNELKKPVILVDVQSFVNNVN+LML++NKTNKNDVAIRIQNAM GFQPNVTAMNSLHASY LNKIQFDTTATLINSTLLTNVKESLSLLK+QPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCK ASNSVNSAVNIFCVIILGPFNNIWMGMGWFLLFIIPAIIFAVKLTGIYRITHVETESAAYNHAYMSSNQFLNKNGLEMIRMGRPQKI
Sbjct:    1 MKIIILAIWAFIFCSNLQFTNAGSNLRTSFDQFRSLTNQFLNTIQPNYGSLNLTTNLISNITGNYMNTDYKYYINLYWQPYVGYIILIIIGILFFVFFPLVGMCFCCCRVCCKQRGAKTEAVYNMKRKRIVFNIFLLIFTSLILIGAIVAMASNFVFRDAFNNSNNDSDGNFLYNFNTTVAKFINYINSVRNNISGPGLNLIAQVAVTAPSLLSPISTVFIQNFRSGISFDSLLQNAYALTQTYVNLQTYSKNLSDIAGRHQSAANDFTAYLSNFNNSLSAELTSANCGNSS-CNAVLGQIPSLILGFNMSNINYVADISAVNVTNSYNVTNLNNSIGSITNTVVNVTNDANSTFMNYINSFINNLNSTTQLMQLNNTINSSITVVINYINDFSKSLLATQLGNKTISDGVLYDYVTYVFYGFCVLISIILLVVLL--------------FFVGLCFGIC--GKGGGFLMAAVTFSFLFGWFIMLITMIMFLIGGLANTEVCRILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNLISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSNINNIQNVVNQLMTIVSPQTQNELKKPVILVDVQSFVNNVNKLMLEMNKTNKNDVAIRIQNAMAGFQPNVTAMNSLHASYSLNKIQFDTTATLINSTLLTNVKESLSLLKTQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCKEASNSVNSAVNIFCVIILGPFNNIWMGMGWFLLFIIPAIIFAVKLTGIYRITHVETESAAYNHAYMSSNQFLNKNGLEMIRMGRPQKI 824
[Close]
BLAST of Prominin (Prom) protein, putative vs. Planmine SMEST
Match: SMESG000013192.1 (SMESG000013192.1)

HSP 1 Score: 56.225 bits (134), Expect = 1.005e-7
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 3 
Query: 2283 VKATINQTLYGLFTVAGDCKGASNSVNSAVNIFCVIILGPFNNIWMGMGWXXXXXXXXXXXXVKLTGIYRITHVETESAAYN----HAYMSSNQFLNKNGLEMIRMGRPQ 2600
            VK+ +N+   G +     C G  NS    ++ FCV +L P+N  W G+G  L+F IPAIIFAVKL G+YR  H E  SA Y     H+YM        N  + I M +P+
Sbjct:  601 VKSILNKVYIGSYDQV-KCVGMYNSTKMLIDAFCVTLLWPYNGFWYGIGICLVFTIPAIIFAVKLAGLYR--HTEKYSADYEEPDYHSYMG----FYTNNADNIPMKKPK 703
The following BLAST results are available for this feature:
BLAST of Prominin (Prom) protein, putative vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSXETT00000004747.13.401e-1026.60prominin 3 [Source:NCBI gene;Acc:100488690][more]
ENSXETT00000002731.11.332e-926.70prominin 3 [Source:NCBI gene;Acc:100488690][more]
ENSXETT00000002658.11.408e-926.70prominin 3 [Source:NCBI gene;Acc:100488690][more]
prom11.609e-626.54prominin 1 [Source:NCBI gene;Acc:100036621][more]
prom19.866e-626.86prominin 1 [Source:NCBI gene;Acc:100036621][more]
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2C9KYI12.083e-1228.91Uncharacterized protein OS=Biomphalaria glabrata O... [more]
A0A2C9KYI24.777e-1230.10Uncharacterized protein OS=Biomphalaria glabrata O... [more]
A0A2C9KYV81.316e-1129.46Uncharacterized protein OS=Biomphalaria glabrata O... [more]
A0A2C9KYM21.085e-1029.17Uncharacterized protein OS=Biomphalaria glabrata O... [more]
V4BDS23.770e-1028.76Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Prominin (Prom) protein, putative vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000062666.10.000e+095.36SMESG000062666.1[more]
SMESG000013192.11.005e-740.00SMESG000013192.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30003079 ID=SMED30003079|Name=Prominin (Prom) protein, putative|organism=Schmidtea mediterranea sexual|type=transcript|length=2892bp
ATGAACTTTAACAAACAATTTAAAATTAGAAAGCAAATTTTTATTCAAGT
TATTTAAATATTTGCGTTAAATTTTTTTATTCATTTTTGAATATGAAAAT
AATAATTTTGGCTATATGGGCGTTTATTTTTTGTTCCAACTTACAATTTA
CAAATGCTGGTTCAAATTTAAGAACAAGTTTTGATCAGTTTCGGTCTTTA
ACAAATCGGTTCTTGAATACTATTCAACCAAATAATGGCAGTTTAAATTT
GACAGCAAATTTGATTTCAAATATCACTGGAAATTATACGAATACGGATT
ATAAGTATTACATAAATTTGTACTGGCAACCTTATGTTGGATATATTATT
CTCATTATAATTGGAATATTGTTTTTTGTCTTTTTCCCTTTGGTCGGCAT
GTGTTTTTGTTGCTGTCGAGTTTGCTGCAAGCAACGCGGAGCAAAAACGG
AAGCTGTCTATAACATGAAAAGAAAACGGATCGTTTTTAATATATTTCTT
TTAATTTTCACAAGTCTAATATTAATTGGAGCAATTGTTGCTATGGCAAG
CAATTTTGTATTTCGTGATGCTTTTAACAATACAAATAATGACAGTGATG
GGAATTTTCTTTATAACTTCAATACGACAGTGGCTAAATTCATCAACTAT
ATAAATTCTGTGAGAAATAATATATCTGGGCCAGGGCTTAATTTAATAGC
ACAGGTTGCTGTTACTGCTCCTTCATTGCTTTCACCAATTTCAACAGTTT
TCATTCAGAATTTCAGATCTGGAATTAGTTTCGACAGTTTATTACAAAAT
GCATATGCTTTAACACAGACCTATGTCAACCTTCAAACATATTCAAAAAA
TCTGTCAGATATAGCTGGACGTCATCAGCCCGCTGCTAATGATTTTACTG
CTTATTTAAGTAACTTCAACAACAGTTTATCCGCTGAATTAACAAGTGCC
AATTGTGGAAATTCAACATATTGCAATGCGGTCCTCGGTCAGATCCCCTC
TTTAATATTGGGATTCAATATGTCTAATATCAATTACGTGGCTGATATTT
CTGCAGTAAATGTCACTAATTCCTATAACGTTACTAATCTAAATAACTCT
ATTGGCTCGATTACAAACACTGTGGTCAACGTTACAAATGATGCAAATTC
AACTTTTATGAATTACATAAATTCATTTATTAACAATTTGAACTCAACGA
CTCAGTTAATGCAGTTAAACAATACCATCAACAGTAGCATAACGGTGGTA
ATTAATTATATCAATGACTTTTCAAAATCCTTACTCGCAACGCAACTGGG
TAATAAAACTATTTCAGACGGAGTTCTATATGATTATGTTACATATGTGT
TTTATGGTTTTTGTGTTCTAATATCCATAATCTTGTTAGTCGTACTATTA
TTTTTCGTTGGCCTTTGCTTTGGTATATGTGGTGCCCCTAATTTTGAAGA
TGCTTCGTGTTGTAATAAAGGCAAAGGAGGGGGATTTTTGATGGCAGCAG
TAACTTTTTCATTTTTATTTGGTTCGTTCATAATGCTAATAACAATGATA
ATGTTTCTGATCGGAGGATTGGCGAATACAGAAGTCTGTAGGATTTTAAC
GGCGCCAACACCTAGTCAAACCGCGATCGTGGATTCTATTATAAGTCCTT
ATTTAAAAAATGTCAATCTTGGACCGGTTTCTTTATCTAACATAAGTGTA
TATCAATCTCTTATGATTGGTTGTCAAAATTCCCCGAATTTAATATCGGC
TTTACAAATATCTGATTCGTTTATGGCTTCAATCGTGACCTACATCCAAA
CGAATTTTATTGATGCTCAAATCAACCAAACAATAACCAGCATTTCCAAT
TACAATGTTTCTACGATTAATACCACAGATTTGGACTCGAATATCAACAA
TATACAAAATGTGGTGAATCAATTAATGACCATTGTTTCACCCCAAACGC
AAAATGAACTCAAAAAACCGGTTATTCTTGTCGATGTCCAAAGTTTTGTC
AATAATGTCAACCAACTCATGTTAGACTTGAACAAAACTAACAAAAACGA
TGTTGCAATTCGAATTCAGAATGCTATGGTTGGGTTCCAACCAAATGTAA
CGGCAATGAACAGCCTTCATGCATCATATTTATTGAATAAGATACAATTT
GATACTACTGCTACGTTAATCAATTCTACTCTGTTGACTAATGTCAAAGA
GAGTTTGAGTCTTCTTAAATCTCAACCAAGTAACGCTAGAAATAAAGCAA
TTTTGGCTGCAGCAGATAGTTTGAGAAGTATTGTGAAAGCCACTATAAAC
CAAACTTTATATGGTTTGTTTACTGTTGCCGGTGACTGCAAAGGGGCGTC
AAACTCTGTCAATTCTGCCGTTAATATATTTTGCGTCATTATCCTTGGTC
CATTTAACAACATTTGGATGGGCATGGGCTGGTTTTTATTATTCATTATT
CCGGCGATTATTTTCGCGGTGAAATTGACGGGAATCTATAGAATTACTCA
TGTAGAAACCGAGTCGGCGGCTTACAATCATGCTTATATGTCATCGAATC
AGTTTCTGAATAAAAACGGGCTTGAAATGATCAGAATGGGGCGCCCACAA
AAAATTTAACCATATCTTAGACTGAGCTGTGATTTATTCATTTTTCATAT
CGTCTTTTAATTTGCATATCCATTTCAATTTGTTATTCAAATTGAATTGT
TGTTGATATTTTGTGATTTTATCTATAAATTTTACCTGATTTCAGTTGTT
AAATATATTATTATTTTCCTTTTGTTATGTTGATAGTTTACTGGTTCAAA
ATTTGTAACATTTTTTAGAAATTCTTTATTGTATCTTCCTTTTTATCTAC
CTTGAACTGTTCCAAATTCAACAATTTTAAGATATATTATTG
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protein sequence of SMED30003079-orf-1

>SMED30003079-orf-1 ID=SMED30003079-orf-1|Name=SMED30003079-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=839bp
MKIIILAIWAFIFCSNLQFTNAGSNLRTSFDQFRSLTNRFLNTIQPNNGS
LNLTANLISNITGNYTNTDYKYYINLYWQPYVGYIILIIIGILFFVFFPL
VGMCFCCCRVCCKQRGAKTEAVYNMKRKRIVFNIFLLIFTSLILIGAIVA
MASNFVFRDAFNNTNNDSDGNFLYNFNTTVAKFINYINSVRNNISGPGLN
LIAQVAVTAPSLLSPISTVFIQNFRSGISFDSLLQNAYALTQTYVNLQTY
SKNLSDIAGRHQPAANDFTAYLSNFNNSLSAELTSANCGNSTYCNAVLGQ
IPSLILGFNMSNINYVADISAVNVTNSYNVTNLNNSIGSITNTVVNVTND
ANSTFMNYINSFINNLNSTTQLMQLNNTINSSITVVINYINDFSKSLLAT
QLGNKTISDGVLYDYVTYVFYGFCVLISIILLVVLLFFVGLCFGICGAPN
FEDASCCNKGKGGGFLMAAVTFSFLFGSFIMLITMIMFLIGGLANTEVCR
ILTAPTPSQTAIVDSIISPYLKNVNLGPVSLSNISVYQSLMIGCQNSPNL
ISALQISDSFMASIVTYIQTNFIDAQINQTITSISNYNVSTINTTDLDSN
INNIQNVVNQLMTIVSPQTQNELKKPVILVDVQSFVNNVNQLMLDLNKTN
KNDVAIRIQNAMVGFQPNVTAMNSLHASYLLNKIQFDTTATLINSTLLTN
VKESLSLLKSQPSNARNKAILAAADSLRSIVKATINQTLYGLFTVAGDCK
GASNSVNSAVNIFCVIILGPFNNIWMGMGWFLLFIIPAIIFAVKLTGIYR
ITHVETESAAYNHAYMSSNQFLNKNGLEMIRMGRPQKI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR008795Prominin
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane