SMED30002950
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002950 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Alignments
SMED30002950 aligns in the following genomic locations:
Homology
BLAST of SMED30002950 vs. Ensembl Human
Match: DDX55 (DEAD-box helicase 55 [Source:HGNC Symbol;Acc:HGNC:20085]) HSP 1 Score: 91.2781 bits (225), Expect = 4.410e-23 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 SW+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E LL + K + V ++I++PT ELA Q E+ ++F +F Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF 109
BLAST of SMED30002950 vs. Ensembl Human
Match: DDX55 (DEAD-box helicase 55 [Source:HGNC Symbol;Acc:HGNC:20085]) HSP 1 Score: 88.9669 bits (219), Expect = 1.021e-20 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 SW+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E LL + K + V ++I++PT ELA Q E+ ++F +F Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF 109
BLAST of SMED30002950 vs. Ensembl Human
Match: DDX55 (DEAD-box helicase 55 [Source:HGNC Symbol;Acc:HGNC:20085]) HSP 1 Score: 88.9669 bits (219), Expect = 1.021e-20 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 SW+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E LL + K + V ++I++PT ELA Q E+ ++F +F Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF 109
BLAST of SMED30002950 vs. Ensembl Human
Match: DDX54 (DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]) HSP 1 Score: 71.633 bits (174), Expect = 1.957e-15 Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = -1 Query: 89 FEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKI 370 ++ PTPIQ IP L KD+VA A TGSGKT F++P+ E L + T ++ILSPT ELA QT + F L F G K LIL ++ Sbjct: 33 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSA--QTGARALILSPTRELALQTLK-FTKELGKFTGLKTALILGGDRM 123
BLAST of SMED30002950 vs. Ensembl Human
Match: DDX46 (DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]) HSP 1 Score: 72.4034 bits (176), Expect = 5.089e-15 Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = -1 Query: 167 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTD-VFSVILSPTSELANQ 433 SW + C +S N+LK +EKPTPIQT IP + +DL+ A TGSGKT+AF++P+ + + S + + +VI++PT ELA Q Sbjct: 325 SW--VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 412
BLAST of SMED30002950 vs. Ensembl Celegans
Match: F53H1.1 (pep chromosome:WBcel235:IV:1297222:1309652:-1 gene:WBGene00018776.1 transcript:F53H1.1a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F53H1.1) HSP 1 Score: 73.559 bits (179), Expect = 9.383e-16 Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = -1 Query: 143 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPII-ELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNF 433 +W G L N LK ++ KPT IQ IP + +D++ A TGSGKTLAF++P+ +L++ + + +VIL+PT ELA QTY+ N F Sbjct: 305 TWAQCGVNL--KMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKF 400
BLAST of SMED30002950 vs. Ensembl Celegans
Match: F53H1.1 (pep chromosome:WBcel235:IV:1297400:1309644:-1 gene:WBGene00018776.1 transcript:F53H1.1b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F53H1.1) HSP 1 Score: 73.559 bits (179), Expect = 9.531e-16 Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = -1 Query: 143 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTD-VFSVILSPTSELANQTYEMFNNF 433 +W G L N LK ++ KPT IQ IP + +D++ A TGSGKTLAF++P+ + + + D +VIL+PT ELA QTY+ N F Sbjct: 305 TWAQCGVNL--KMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKF 400
BLAST of SMED30002950 vs. Ensembl Celegans
Match: Y94H6A.5 (ATP-dependent RNA helicase [Source:UniProtKB/TrEMBL;Acc:Q688Z3]) HSP 1 Score: 72.4034 bits (176), Expect = 2.130e-15 Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -1 Query: 125 WKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNG 430 W+ +G L + A++ F +PTPIQ IP + KD+VA + TGSGKT AF+IP+++ L D +T + ++++SPT ELA QT+++ L F G Sbjct: 26 WQQIG--LDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRD---TTGIRALMVSPTRELALQTFKVVKE-LGRFTG 121
BLAST of SMED30002950 vs. Ensembl Celegans
Match: B0511.6 (RNA helicase [Source:UniProtKB/TrEMBL;Acc:O61815]) HSP 1 Score: 71.633 bits (174), Expect = 4.215e-15 Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = -1 Query: 128 LGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 421 L K++ N A++ L F T IQ I L+ KD++A A TGSGKTLAF++P IELL++++ + +I+SPT EL+ QTY + + L N Sbjct: 71 LEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSN 168
BLAST of SMED30002950 vs. Ensembl Celegans
Match: ddx-52 (DEAD boX helicase homolog [Source:UniProtKB/TrEMBL;Acc:Q21736]) HSP 1 Score: 69.3218 bits (168), Expect = 2.772e-14 Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = -1 Query: 110 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEM------DSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNL 409 +S + N L +P+PIQ IP ++++++A A TGSGKTLAF +P+I+ + E+ S S+ + +V+L PT ELA QTY F + +N + S N Sbjct: 133 MSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANF 238
BLAST of SMED30002950 vs. Ensembl Fly
Match: CG5800 (gene:FBgn0030855 transcript:FBtr0074453) HSP 1 Score: 77.411 bits (189), Expect = 6.164e-17 Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = -1 Query: 65 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTD-VFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKIRILKFRVE 409 LSK T AL KF PT +Q I LQ KD++ A+TGSGKTLAF+IP++E L M+ + TD V ++I+SPT ELA Q +E + + S LI+ K ++ + R++ Sbjct: 79 LSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF-MNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFS-AGLIIGGKNLKFERTRMD 192
BLAST of SMED30002950 vs. Ensembl Fly
Match: pit (gene:FBgn0266581 transcript:FBtr0084174) HSP 1 Score: 75.485 bits (184), Expect = 2.674e-16 Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = -1 Query: 128 DTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 448 D+ D S+ L +S+ T A+K + F + T IQ+ + L+ +DLV A TGSGKTLAF+IP +EL+N++ +I+SPT EL+ QT+ + +++ + Sbjct: 181 DSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHH 287
BLAST of SMED30002950 vs. Ensembl Fly
Match: pit (gene:FBgn0266581 transcript:FBtr0346345) HSP 1 Score: 75.485 bits (184), Expect = 2.674e-16 Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = -1 Query: 128 DTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 448 D+ D S+ L +S+ T A+K + F + T IQ+ + L+ +DLV A TGSGKTLAF+IP +EL+N++ +I+SPT EL+ QT+ + +++ + Sbjct: 181 DSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHH 287
BLAST of SMED30002950 vs. Ensembl Fly
Match: pit (gene:FBgn0266581 transcript:FBtr0084175) HSP 1 Score: 75.485 bits (184), Expect = 2.674e-16 Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = -1 Query: 128 DTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 448 D+ D S+ L +S+ T A+K + F + T IQ+ + L+ +DLV A TGSGKTLAF+IP +EL+N++ +I+SPT EL+ QT+ + +++ + Sbjct: 181 DSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHH 287
BLAST of SMED30002950 vs. Ensembl Fly
Match: CG9630 (gene:FBgn0037561 transcript:FBtr0081866) HSP 1 Score: 73.9442 bits (180), Expect = 7.444e-16 Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = -1 Query: 134 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELL---NEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 409 LS ++ F++ TP+QT IP L +KD+ A+AVTGSGKTLAF++P++E+L ++ + ++ ++++SPT ELA Q E+ FL + Sbjct: 14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEH 108
BLAST of SMED30002950 vs. Ensembl Zebrafish
Match: ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:NCBI gene;Acc:286745]) HSP 1 Score: 88.9669 bits (219), Expect = 6.990e-21 Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = -1 Query: 131 DISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 439 D W L KL N LK L F TP+Q+ IP F+ KD+ A+AVTGSGKTLAF+IP +E LL + K V ++I++PT ELA Q E+ FL F Sbjct: 6 DGKWGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGF 109
BLAST of SMED30002950 vs. Ensembl Zebrafish
Match: ddx18 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-030131-9685]) HSP 1 Score: 73.559 bits (179), Expect = 1.573e-15 Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = -1 Query: 134 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 442 +D S+ L +S+NT +K + F+ T IQ I L+ +D++A A TGSGKTLAF+IP IEL+ ++ ++LSPT ELA QTY + +++ Sbjct: 157 EDRSFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTH 259
BLAST of SMED30002950 vs. Ensembl Zebrafish
Match: ddx46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:NCBI gene;Acc:321948]) HSP 1 Score: 72.0182 bits (175), Expect = 5.839e-15 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -1 Query: 167 CKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPII-ELLNEMDSFKSTDVFSVILSPTSELANQ 415 C +S NALK +EKPTPIQ IP + +DL+ A TGSGKT+AF++P+ +L++ ++ +VI++PT ELA Q Sbjct: 345 CGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQ 428
BLAST of SMED30002950 vs. Ensembl Zebrafish
Match: ddx54 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Source:ZFIN;Acc:ZDB-GENE-021220-2]) HSP 1 Score: 70.0922 bits (170), Expect = 2.410e-14 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = -1 Query: 104 FEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLIL 370 ++ PTPIQ IP L KD+VA A TGSGKT AF++P+ E L + T ++IL+PT ELA QT + F L F G + LIL Sbjct: 98 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKLKAPQA--QTGARALILTPTRELALQTMK-FTKELGKFTGLRTALIL 183
BLAST of SMED30002950 vs. Ensembl Zebrafish
Match: ddx31 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]) HSP 1 Score: 67.0106 bits (162), Expect = 3.060e-13 Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = -1 Query: 59 KCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDS--FKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKIRILKFRVE*G 382 K L T +Q IP + KD V ++ TGSGKTLA+ IP+++ L + +S +V++ PT ELA Q+++MF L F P +++ +K + K R+ G Sbjct: 171 KVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKG 280
BLAST of SMED30002950 vs. Ensembl Xenopus
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:100145293]) HSP 1 Score: 88.1965 bits (217), Expect = 1.960e-20 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 +W L KL+ + L LKF TP+Q+ IP F+ KD+ A+A+TGSGKTLAF+IP++E LL + K V ++I++PT ELA Q E+ + F +F Sbjct: 8 TWDSLSHKLNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQVGAIIITPTRELAVQIDEVLSYFTKHF 109
BLAST of SMED30002950 vs. Ensembl Xenopus
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:100145293]) HSP 1 Score: 87.8113 bits (216), Expect = 2.451e-20 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 +W L KL+ + L LKF TP+Q+ IP F+ KD+ A+A+TGSGKTLAF+IP++E LL + K V ++I++PT ELA Q E+ + F +F Sbjct: 8 TWDSLSHKLNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQVGAIIITPTRELAVQIDEVLSYFTKHF 109
BLAST of SMED30002950 vs. Ensembl Xenopus
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:100145293]) HSP 1 Score: 87.8113 bits (216), Expect = 2.455e-20 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 +W L KL+ + L LKF TP+Q+ IP F+ KD+ A+A+TGSGKTLAF+IP++E LL + K V ++I++PT ELA Q E+ + F +F Sbjct: 11 TWDSLSHKLNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQVGAIIITPTRELAVQIDEVLSYFTKHF 112
BLAST of SMED30002950 vs. Ensembl Xenopus
Match: DDX54 (DEAD-box helicase 54 [Source:NCBI gene;Acc:733994]) HSP 1 Score: 77.0258 bits (188), Expect = 1.466e-16 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = -1 Query: 89 FEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKI 370 ++ PTPIQ VIP L KD+VA A TGSGKT F+IP+ E L + T V +ILSPT ELA QT + F L F G K LIL KI Sbjct: 71 YKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAHSA--QTGVRGLILSPTRELALQTLK-FTKELGKFTGLKTALILGGDKI 161
BLAST of SMED30002950 vs. Ensembl Xenopus
Match: DDX54 (DEAD-box helicase 54 [Source:NCBI gene;Acc:733994]) HSP 1 Score: 73.559 bits (179), Expect = 2.291e-15 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = -1 Query: 89 FEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKI 370 ++ PTPIQ VIP L KD+VA A TGSGKT F+IP+ E L + T V +ILSPT ELA QT + F L F G K LIL KI Sbjct: 69 YKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAHSA--QTGVRGLILSPTRELALQTLK-FTKELGKFTGLKTALILGGDKI 159
BLAST of SMED30002950 vs. Ensembl Mouse
Match: Ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:MGI Symbol;Acc:MGI:1915098]) HSP 1 Score: 87.0409 bits (214), Expect = 3.518e-20 Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 +W+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E LL + K V +++++PT ELA Q E+ ++F +F Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF 109
BLAST of SMED30002950 vs. Ensembl Mouse
Match: Ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:MGI Symbol;Acc:MGI:1915098]) HSP 1 Score: 87.0409 bits (214), Expect = 3.525e-20 Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 +W+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E LL + K V +++++PT ELA Q E+ ++F +F Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF 109
BLAST of SMED30002950 vs. Ensembl Mouse
Match: Ddx18 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:MGI Symbol;Acc:MGI:1914192]) HSP 1 Score: 73.9442 bits (180), Expect = 1.389e-15 Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = -1 Query: 134 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 442 +D S+ L +++NT A++ + F++ T IQ I L+ +DL+A A TGSGKTLAF+IP+IEL+ ++ +ILSPT ELA QT+ + +++ Sbjct: 165 EDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTH 267
BLAST of SMED30002950 vs. Ensembl Mouse
Match: Ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:MGI Symbol;Acc:MGI:1915098]) HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-15 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = -1 Query: 242 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELL 433 +W+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E+L Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEIL 71
BLAST of SMED30002950 vs. Ensembl Mouse
Match: Ddx46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:MGI Symbol;Acc:MGI:1920895]) HSP 1 Score: 72.4034 bits (176), Expect = 4.129e-15 Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = -1 Query: 167 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTD-VFSVILSPTSELANQ 433 SW + C +S N+LK +EKPTPIQT IP + +DL+ A TGSGKT+AF++P+ + + S + + +VI++PT ELA Q Sbjct: 373 SW--VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
BLAST of SMED30002950 vs. UniProt/SwissProt
Match: sp|Q6CN92|SPB4_KLULA (ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SPB4 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.281e-21 Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = -1 Query: 131 TKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELL--NEMDS--FKSTDVFSVILSPTSELANQTYEMFNNFLSNF 445 +K +SW DL C++ A++ + FE TP+Q IP F KD+V ++VTGSGKT+AF+IPI+E L E +S FK + S+I+SPT ELA+Q +++ +FL + Sbjct: 2 SKSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYY 110
BLAST of SMED30002950 vs. UniProt/SwissProt
Match: sp|Q54EC2|DDX55_DICDI (Probable ATP-dependent RNA helicase ddx55 OS=Dictyostelium discoideum OX=44689 GN=ddx55 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.650e-21 Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = -1 Query: 128 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 433 W L KLS +T N + L F+ +P+Q+ VIP F+ KD++ +A TGSGKTLAF+IPIIE +L + K TD+ S+I+SPT ELA Q ++ FL++ N Sbjct: 9 GWNKLENKLSDSTLNTINRLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRETNLKKTDIASIIISPTRELAIQIQQVLLEFLNDLN 111
BLAST of SMED30002950 vs. UniProt/SwissProt
Match: sp|Q8NHQ9|DDX55_HUMAN (ATP-dependent RNA helicase DDX55 OS=Homo sapiens OX=9606 GN=DDX55 PE=1 SV=3) HSP 1 Score: 88.9669 bits (219), Expect = 4.901e-20 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 SW+ L L AL+ L F TP+Q+ IP F++ KD+ A+AVTGSGKTLAF+IPI+E LL + K + V ++I++PT ELA Q E+ ++F +F Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF 109
BLAST of SMED30002950 vs. UniProt/SwissProt
Match: sp|Q8JHJ2|DDX55_DANRE (ATP-dependent RNA helicase DDX55 OS=Danio rerio OX=7955 GN=ddx55 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 5.176e-20 Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = -1 Query: 131 DISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 439 D W L KL N LK L F TP+Q+ IP F+ KD+ A+AVTGSGKTLAF+IP +E LL + K V ++I++PT ELA Q E+ FL F Sbjct: 6 DGKWGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGF 109
BLAST of SMED30002950 vs. UniProt/SwissProt
Match: sp|Q5ZLN8|DDX55_CHICK (ATP-dependent RNA helicase DDX55 OS=Gallus gallus OX=9031 GN=DDX55 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.070e-20 Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = -1 Query: 131 WKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 430 W L LS AL+ L F++ TP+Q+ IP F+ KD+ A+AVTGSGKTLAF+IPI+E LL + K V ++I++PT ELA Q E+ +F +F Sbjct: 9 WSSLPVALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHF 109
BLAST of SMED30002950 vs. TrEMBL
Match: D6WYU0 (RNA helicase OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006038 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.698e-25 Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = -1 Query: 125 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNG 433 SW +LG KL K NA+K L F TPIQ IP+ L KKD+VA+AVTGSGKTLAF+IP++++L + D +K ++ ++I+SPT ELA Q ++ N L + +G Sbjct: 4 SWAELGVKLHKEVQNAVKTLNFPTMTPIQAAAIPQLLNKKDVVAEAVTGSGKTLAFLIPLLQILKQRDKWKKAEIGALIISPTRELATQINQVLNQLLESISG 106
BLAST of SMED30002950 vs. TrEMBL
Match: A0A180GHF6 (RNA helicase OS=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) OX=630390 GN=PTTG_02665 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.199e-23 Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = -1 Query: 134 DLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 424 DL L+ ++ +K L F + TP+Q H IP FLQ KD+V QAVTGSGKTLAF+IPIIE L +++ + V ++I+SPT ELA+QT+++ N FL N Sbjct: 13 DLKPPLTSWVSDTIKSLGFHQMTPVQAHTIPLFLQNKDVVVQAVTGSGKTLAFLIPIIERLVQLEQRPKSHVAAIIISPTRELASQTFQVLNQFLDN 109
BLAST of SMED30002950 vs. TrEMBL
Match: A0A1B6KBR8 (Uncharacterized protein (Fragment) OS=Graphocephala atropunctata OX=36148 GN=g.18868 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.319e-22 Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = -1 Query: 131 DISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFL--SNF 439 D SW ++ LSK N +K L F+ TP+Q IP L+ KD+ AQAVTGSGKTLAF+IPI+E LL D +K +V ++I+SPT ELA Q E+ + FL SNF Sbjct: 2 DSSWSNIKPSLSKTNLNTIKSLGFQSMTPVQASCIPLLLRNKDVAAQAVTGSGKTLAFVIPIMELLLKRDDKWKPHEVGAIIISPTRELALQISEVLDKFLIHSNF 107
BLAST of SMED30002950 vs. TrEMBL
Match: A0A0L0VLZ9 (RNA helicase OS=Puccinia striiformis f. sp. tritici PST-78 OX=1165861 GN=PSTG_06421 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.872e-22 Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = -1 Query: 134 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 433 S+ DL L+ + +K L F + TP+Q H IP FL+ KD+V QAVTGSGKTLAF+IPIIE L +++ + V ++I+SPT ELA QT+++ N FL N Sbjct: 10 SFDDLNPPLASWVLDTIKSLGFHQMTPVQAHTIPLFLENKDVVVQAVTGSGKTLAFVIPIIERLIQLEPRPHSHVAAIIISPTRELATQTFQVVNQFLEN 109
BLAST of SMED30002950 vs. TrEMBL
Match: A0A2S4UDG9 (RNA helicase OS=Puccinia striiformis OX=27350 GN=PSTT_16400 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.149e-22 Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = -1 Query: 134 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 433 S+ DL L+ + +K L F + TP+Q H IP FL+ KD+V QAVTGSGKTLAF+IPIIE L +++ + V ++I+SPT ELA QT+++ N FL N Sbjct: 10 SFDDLNPPLASWVLDTIKSLGFHQMTPVQAHTIPLFLENKDVVVQAVTGSGKTLAFVIPIIERLIQLEPRPHSHVAAIIISPTRELATQTFQVVNQFLEN 109
BLAST of SMED30002950 vs. Ensembl Cavefish
Match: ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:NCBI gene;Acc:286745]) HSP 1 Score: 84.7297 bits (208), Expect = 1.440e-19 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = -1 Query: 131 WKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 430 W L L L+ L F TP+Q+ IP F+ KD+ A+AVTGSGKTLAF+IP++E LL + K V ++I++PT ELA Q E+ FL F Sbjct: 9 WDSLSVNLQDGIKRTLQKLGFTFMTPVQSACIPLFMSNKDIAAEAVTGSGKTLAFVIPVLEILLKREEKLKKMQVGALIITPTRELAVQISEVMGQFLEEF 109
BLAST of SMED30002950 vs. Ensembl Cavefish
Match: ENSAMXT00000040066.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000729.1:45111:52135:1 gene:ENSAMXG00000042612.1 transcript:ENSAMXT00000040066.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 76.2554 bits (186), Expect = 1.465e-16 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = -1 Query: 140 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFL 442 +D S+ L +S+NT +K + FE T IQ I L+ +D++A A TGSGKTLAF+IP IEL+ ++ +ILSPT ELA QTY + + + Sbjct: 67 EDQSFASLAELVSENTLKGIKEMGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLRFMPRNGTGVIILSPTRELAMQTYGVLKDLM 167
BLAST of SMED30002950 vs. Ensembl Cavefish
Match: ENSAMXT00000031571.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000729.1:45111:52134:1 gene:ENSAMXG00000042612.1 transcript:ENSAMXT00000031571.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 75.8702 bits (185), Expect = 2.237e-16 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = -1 Query: 140 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFL 442 +D S+ L +S+NT +K + FE T IQ I L+ +D++A A TGSGKTLAF+IP IEL+ ++ +ILSPT ELA QTY + + + Sbjct: 104 EDQSFASLAELVSENTLKGIKEMGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLRFMPRNGTGVIILSPTRELAMQTYGVLKDLM 204
BLAST of SMED30002950 vs. Ensembl Cavefish
Match: ddx18 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-030131-9685]) HSP 1 Score: 75.485 bits (184), Expect = 2.892e-16 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = -1 Query: 140 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFL 442 +D S+ L +S+NT +K + FE T IQ I L+ +D++A A TGSGKTLAF+IP IEL+ ++ +ILSPT ELA QTY + + + Sbjct: 222 EDQSFASLAELVSENTLKGIKEMGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLRFMPRNGTGVIILSPTRELAMQTYGVLKDLM 322
BLAST of SMED30002950 vs. Ensembl Cavefish
Match: ddx46 (DEAD-box helicase 46 [Source:NCBI gene;Acc:103041720]) HSP 1 Score: 70.4774 bits (171), Expect = 1.609e-14 Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -1 Query: 167 CKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPII-ELLNEMDSFKSTDVFSVILSPTSELANQ 415 C S NALK +EKPTPIQ+ IP + +DL+ A TGSGKT+AF++P+ +L++ + +VI++PT ELA Q Sbjct: 379 CGTSMKVLNALKKHNYEKPTPIQSQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPLEEGEGPIAVIMTPTRELALQ 462
BLAST of SMED30002950 vs. Ensembl Sea Lamprey
Match: DDX54 (DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]) HSP 1 Score: 69.707 bits (169), Expect = 4.699e-15 Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = -1 Query: 89 FEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKI 370 ++ PTPIQ IP L+ +D+VA A TGSGKT AF++P+ E L+ + +++LSPT ELA QT + F L G K LIL ++ Sbjct: 53 YKVPTPIQRKCIPVILEGRDVVAMARTGSGKTAAFLVPMFERLHARSA--QAGARALVLSPTRELALQTSK-FTKELGKHTGLKTALILGGDRM 143
BLAST of SMED30002950 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010109.1 (pep scaffold:Pmarinus_7.0:GL476492:615610:626431:-1 gene:ENSPMAG00000009147.1 transcript:ENSPMAT00000010109.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.3218 bits (168), Expect = 7.085e-15 Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = -1 Query: 134 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 442 +D+S+ L +S+ T A+ + F T IQ I L+ +D++A A TGSGKTLAF+IP IEL++++ ++LSPT ELA QTY + + + Sbjct: 173 EDMSFSSLAELVSEYTLKAVAEMGFATMTEIQHKSIRPLLEGRDILAAARTGSGKTLAFLIPAIELIHKIKFMPRNGTGVLVLSPTRELAMQTYGVLRELMKH 275
BLAST of SMED30002950 vs. Ensembl Sea Lamprey
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]) HSP 1 Score: 67.781 bits (164), Expect = 2.463e-14 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = -1 Query: 158 KCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPI---IELLNEMDSFKSTDV--FSVILSPTSELANQTYE 382 KC ++ PTPIQ IP LQ +D++ A TGSGKT AF+IP+ I L ++D + TD ++VIL+PT ELA Q E Sbjct: 337 KC-GYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTAAFLIPLLVWITTLPKIDRIEDTDQGPYAVILAPTRELAQQIEE 415
BLAST of SMED30002950 vs. Ensembl Sea Lamprey
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]) HSP 1 Score: 67.3958 bits (163), Expect = 3.426e-14 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = -1 Query: 149 KCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFN 382 K + KPTP+Q + IP L+ +D + A TGSGKT AF++PI++ L+E D F +F ++L+PT ELA Q E F Sbjct: 21 KQMGISKPTPVQENCIPPILRGQDCMGCAQTGSGKTAAFVLPILQKLSE-DPF---GIFCLVLAPTRELAYQIAEQFR 94
BLAST of SMED30002950 vs. Ensembl Sea Lamprey
Match: ddx46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:NCBI gene;Acc:321948]) HSP 1 Score: 65.855 bits (159), Expect = 1.476e-13 Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = -1 Query: 167 CKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPII-ELLNEMDSFKSTDVFSVILSPTSELANQ 415 C +S N LK +EKPTPIQ IP + +DL+ A TGSGKT+ F++P+ ++++ + VI++PT ELA Q Sbjct: 374 CGISMKILNTLKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIGFLLPMFRHVMDQRPLEEGEGPIGVIMTPTRELALQ 457
BLAST of SMED30002950 vs. Ensembl Yeast
Match: DBP10 (Putative ATP-dependent RNA helicase of the DEAD-box protein family; constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis [Source:SGD;Acc:S000002189]) HSP 1 Score: 77.411 bits (189), Expect = 7.426e-18 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = -1 Query: 143 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNF 409 LSK N +K F +PTPIQ IP LQ +D+V A TGSGKT AFI+P++E L +VILSP+ ELA QT+ +F +F Sbjct: 144 LSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSG--KIGARAVILSPSRELAMQTFNVFKDF 230
BLAST of SMED30002950 vs. Ensembl Yeast
Match: DBP9 (DEAD-box protein required for 27S rRNA processing; exhibits DNA, RNA and DNA/RNA helicase activities; ATPase activity shows preference for DNA over RNA; DNA helicase activity abolished by mutation in RNA-binding domain [Source:SGD;Acc:S000004266]) HSP 1 Score: 75.8702 bits (185), Expect = 2.327e-17 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = -1 Query: 140 ALKCLKFEKPTPIQTHVIPKFLQ-KKDLVAQAVTGSGKTLAFIIPIIELLNE----MDSFKSTDVFSVILSPTSELANQTYEMFNNFL 388 A+K + F+ PT IQ+H IP LQ K+D++A+A TGSGKTLA++IP+IE + E +D+ + +IL PT ELA Q Y + + Sbjct: 31 AIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLV 118
BLAST of SMED30002950 vs. Ensembl Yeast
Match: SPB4 (Putative ATP-dependent RNA helicase; nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients [Source:SGD;Acc:S000001894]) HSP 1 Score: 75.0998 bits (183), Expect = 5.459e-17 Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = -1 Query: 131 TKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDS----FKSTDVFSVILSPTSELANQTYEMFNNFLSNF 445 +K + W +LG L L + FE TP+Q IP KD+V +VTGSGKT AF+IP++E + + ++ FK S+I++PT EL+ Q + +FL ++ Sbjct: 2 SKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHY 110
BLAST of SMED30002950 vs. Ensembl Yeast
Match: DBP8 (ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p [Source:SGD;Acc:S000001212]) HSP 1 Score: 70.8626 bits (172), Expect = 1.305e-15 Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = -1 Query: 128 WKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 430 +K LG LSK +L+ +K +PT IQ IPK L+ +D + A TGSGKT+AF P++ +E S +F V+L+PT ELA Q E F S+ N Sbjct: 4 FKSLG--LSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPS----GMFGVVLTPTRELAMQIAEQFTALGSSMN 98
BLAST of SMED30002950 vs. Ensembl Yeast
Match: DBP7 (Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions [Source:SGD;Acc:S000001732]) HSP 1 Score: 67.781 bits (164), Expect = 2.018e-14 Identity = 36/111 (32.43%), Postives = 66/111 (59.46%), Query Frame = -1 Query: 59 LKFEKPTPIQTHVIPKFLQ---KKDLVAQAVTGSGKTLAFIIPIIELLNEMDSF--KSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKIRILKFRVE*G 376 ++ +KPT IQ IP+ + K D A TGSGKTL++++PII + MD+ +++ F+++++PT ELA+Q Y + + +S + P L++ ++ + K R+ G Sbjct: 162 MRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKG 272
BLAST of SMED30002950 vs. Ensembl Nematostella
Match: EDO41335 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4S3]) HSP 1 Score: 85.5001 bits (210), Expect = 2.905e-20 Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = -1 Query: 113 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN---------FNGSKPN 433 +W+ LS+ T N++K + F TP+Q IP F+ KD+ +AVTGSGKTLAF+IPIIE +L D K ++ ++I++PT ELA Q E+ + + + G+ PN Sbjct: 4 TWESSRPSLSQTTLNSMKKMNFSTMTPVQAAAIPLFMSNKDVAVEAVTGSGKTLAFVIPIIEIILRREDKLKKHEIGALIITPTRELAQQIDEVVSTLVEDIPNIRRLLLIGGADPN 120
BLAST of SMED30002950 vs. Ensembl Nematostella
Match: EDO41969 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2R2]) HSP 1 Score: 70.0922 bits (170), Expect = 8.178e-15 Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = -1 Query: 77 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLI----LFNKKIRILK 409 +SK T + L F PT IQ IP L +D++ A TGSGKTLAF+IPIIE L + ++++SPT ELA QT+E+ + + S +I L N++ RI+K Sbjct: 57 ISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIMK 171
BLAST of SMED30002950 vs. Ensembl Nematostella
Match: EDO38731 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SC22]) HSP 1 Score: 68.1662 bits (165), Expect = 3.256e-14 Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = -1 Query: 128 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFN 409 +S+ T +K + F T IQ I L+ +DL+ A TGSGKTLAF++P++ELL ++ +I+SPT EL+ QTY + + L + N Sbjct: 8 VSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHN 101
BLAST of SMED30002950 vs. Ensembl Nematostella
Match: EDO39253 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAP0]) HSP 1 Score: 64.6994 bits (156), Expect = 3.869e-14 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = -1 Query: 143 LSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNF 409 LS+ A+ L F PTPIQ IP L KD+ A A TG+GKT AF++PI+E L + +S + ++++PT ELA Q + + NN Sbjct: 19 LSRPLLKAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPT-QSPAIRVLVITPTRELAIQIHSVTNNL 106
BLAST of SMED30002950 vs. Ensembl Nematostella
Match: EDO25716 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DVP3]) HSP 1 Score: 65.0846 bits (157), Expect = 8.045e-14 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -1 Query: 158 ISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYE 436 +S+ LG L A++ + P+PIQ IP L KD++A A TG+GKT F +PI+E L + K V ++IL+PT ELA Q + Sbjct: 1 MSFSQLG--LCPGIAKAVELKGYTTPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPILENLVKGSRAKPNHVRALILTPTRELAAQVAD 91
BLAST of SMED30002950 vs. Ensembl Medaka
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:101161657]) HSP 1 Score: 88.9669 bits (219), Expect = 6.058e-21 Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -1 Query: 131 SWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNF 433 +W+ L KL + L+ L+F TP+Q +P F+ KD+ A+AVTGSGKTLAF+IPIIE LL + K V +++++PT ELA Q E+ FL F Sbjct: 8 TWESLPVKLHEGILETLRELRFTHMTPVQAACVPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKLKKMQVGALVITPTRELALQISEVMETFLRRF 109
BLAST of SMED30002950 vs. Ensembl Medaka
Match: ddx18 (DEAD-box helicase 18 [Source:NCBI gene;Acc:101158147]) HSP 1 Score: 70.0922 bits (170), Expect = 1.854e-14 Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = -1 Query: 134 KDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSN 442 +D +++ L +S+ T +K + F+ T IQ + L+ +D++A A TGSGKTLAF+IP IEL+ ++ +ILSPT ELA QTY + +++ Sbjct: 147 EDTAFESLADLVSEGTLKGVKEMGFQHMTEIQHKTVRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMTH 249
BLAST of SMED30002950 vs. Ensembl Medaka
Match: ddx54 (DEAD-box helicase 54 [Source:NCBI gene;Acc:101162145]) HSP 1 Score: 68.9366 bits (167), Expect = 6.255e-14 Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = -1 Query: 104 FEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLIL 370 ++ PTPIQ IP L KD+VA A TGSGKT AF++P+ E L + S ++I+SPT ELA QT + F L F G K LIL Sbjct: 97 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPMFEKLKAPQA--SAGARALIMSPTRELALQTMK-FTKELGKFAGLKTALIL 182
BLAST of SMED30002950 vs. Ensembl Medaka
Match: ddx46 (DEAD-box helicase 46 [Source:NCBI gene;Acc:101161571]) HSP 1 Score: 68.5514 bits (166), Expect = 8.299e-14 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = -1 Query: 167 CKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPII-ELLNEMDSFKSTDVFSVILSPTSELANQ 415 C +S +ALK ++KPTPIQ IP + +DL+ A TGSGKT+AF++P+ ++++ +S SVI++PT ELA Q Sbjct: 282 CGVSMKILSALKKQGYDKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQ 365
BLAST of SMED30002950 vs. Ensembl Medaka
Match: ddx46 (DEAD-box helicase 46 [Source:NCBI gene;Acc:101161571]) HSP 1 Score: 68.1662 bits (165), Expect = 9.152e-14 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = -1 Query: 167 CKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPII-ELLNEMDSFKSTDVFSVILSPTSELANQ 415 C +S +ALK ++KPTPIQ IP + +DL+ A TGSGKT+AF++P+ ++++ +S SVI++PT ELA Q Sbjct: 392 CGVSMKILSALKKQGYDKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQ 475
BLAST of SMED30002950 vs. Planmine SMEST
Match: SMESG000009812.1 (SMESG000009812.1) HSP 1 Score: 251.521 bits (641), Expect = 1.766e-80 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = -1 Query: 92 MTIDTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKK 457 MT DTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKK Sbjct: 1 MTSDTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKK 122
BLAST of SMED30002950 vs. Planmine SMEST
Match: SMESG000064743.1 (SMESG000064743.1) HSP 1 Score: 72.4034 bits (176), Expect = 2.531e-15 Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = -1 Query: 143 GCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELL---NEMDS-----FKSTDVFSVILSPTSELANQTYEMFNNF 418 G K++K + + L + KPTP+Q IP LQ++DL+A A TGSGKT AF+IPI+ ++ DS ++ ++IL+PT ELA Q YE F Sbjct: 116 GLKMTKIMRDNISLLNYHKPTPVQKFAIPIILQRRDLMACAQTGSGKTAAFLIPILNMIYVEGPGDSQIPGNYEKQYPVALILAPTRELACQIYEEIRKF 215
BLAST of SMED30002950 vs. Planmine SMEST
Match: SMESG000018018.1 (SMESG000018018.1) HSP 1 Score: 71.2478 bits (173), Expect = 5.781e-15 Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = -1 Query: 89 TNNALKCL---KFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIE-LLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFLSNFNGSKPNLILFNKKI 397 T + +K L K KPT +Q H IP LQ KD++A A TGSGKT AF+IPII+ L+ ++ + + VIL+PT ELA+Q E L + N +K +I K + Sbjct: 8 TEDVIKLLENKKIIKPTEVQEHCIPLVLQGKDVIACAKTGSGKTAAFLIPIIQNLIVDIKPY-----YCVILTPTRELAHQIGEQAKGLLVSQNLAKTIVITGGKDL 109
BLAST of SMED30002950 vs. Planmine SMEST
Match: SMESG000072404.1 (SMESG000072404.1) HSP 1 Score: 70.0922 bits (170), Expect = 1.507e-14 Identity = 45/93 (48.39%), Postives = 56/93 (60.22%), Query Frame = -1 Query: 155 LGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELL----NEMDSFKSTDVFSVILSPTSELANQTYEM 421 + K+SK AL KPTPIQ IP L+ KD+ A A TGSGKTLAF+IPI+E L N+ + T +V+LSPT ELA Q YE+ Sbjct: 101 MDMKISKPILKALMDSNITKPTPIQEACIPIGLKNKDICACAKTGSGKTLAFLIPIVEKLIRSPNQQGRY--TVPRAVVLSPTRELALQIYEV 191
BLAST of SMED30002950 vs. Planmine SMEST
Match: SMESG000080928.1 (SMESG000080928.1) HSP 1 Score: 69.707 bits (169), Expect = 2.405e-14 Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = -1 Query: 140 KLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLVAQAVTGSGKTLAFIIPIIELLNEMDSFKSTDVFSVILSPTSELANQTYEMFNNFL 412 KLS N NALK + F KPT +Q IP L+ KD+V QA TGSGKTLAF++P++E L + S S + ++IL PT+ELA+QT + + L Sbjct: 11 KLSSNIINALKEMNFLKPTKVQLKTIPVCLKGKDVVVQAKTGSGKTLAFLLPLLENLLRLKSNSSFGIQAIILVPTAELASQTLNVLSKLL 101 The following BLAST results are available for this feature:
BLAST of SMED30002950 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30002950 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30002950 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of SMED30002950 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30002950 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002950 ID=SMED30002950|Name=SMED30002950|organism=Schmidtea mediterranea sexual|type=transcript|length=469bpback to top protein sequence of SMED30002950-orf-1 >SMED30002950-orf-1 ID=SMED30002950-orf-1|Name=SMED30002950-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=132bp MTIDTKDISWKDLGCKLSKNTNNALKCLKFEKPTPIQTHVIPKFLQKKDLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|