SAM domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002927 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of SAM domain-containing protein vs. Ensembl Human
Match: SAMD15 (sterile alpha motif domain containing 15 [Source:HGNC Symbol;Acc:HGNC:18631]) HSP 1 Score: 88.1965 bits (217), Expect = 1.135e-19 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 34 DDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIF 450 + +++ L + + E V+E+ + +L+ L W E+ A ++ +GFPQY N I G++LI + SNL +MGI +F+ +KAI+ +E L IE+P + R I LP R+ +G+YLE K H+G KSD + + F Sbjct: 510 EKEVVDLSQELKERVSEDDETQPEKGTELQFE-HLNWDPEEVAEWISQLGFPQYKECFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRDIIGLYLEQKGHTGIKSDSLTLSEF 647
BLAST of SAM domain-containing protein vs. Ensembl Human
Match: SAMD15 (sterile alpha motif domain containing 15 [Source:HGNC Symbol;Acc:HGNC:18631]) HSP 1 Score: 58.151 bits (139), Expect = 7.509e-11 Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 Query: 268 MGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIF 450 MGI +F+ +KAI+ +E L IE+P + R I LP R+ +G+YLE K H+G KSD + + F Sbjct: 1 MGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRDIIGLYLEQKGHTGIKSDSLTLSEF 61
BLAST of SAM domain-containing protein vs. Ensembl Fly
Match: CG15625 (gene:FBgn0031644 transcript:FBtr0077390) HSP 1 Score: 68.9366 bits (167), Expect = 1.314e-13 Identity = 35/107 (32.71%), Postives = 52/107 (48.60%), Query Frame = 1 Query: 112 DDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDK 432 D L +P W D ++ G+PQYMN N I G++L+ ++AS L M IK+FDHI+ I+ +R E + I LP +YL +G D+ Sbjct: 69 DKLPLPSIFEWDDMDIRRWINGYGYPQYMNTFRVNMITGRKLLLLDASALCAMNIKNFDHIRHISYGIRMLFHFELTKFSSSISLPDEKPNELYLLFHTQTGVNYDE 175
BLAST of SAM domain-containing protein vs. Ensembl Fly
Match: CG13996 (gene:FBgn0031763 transcript:FBtr0079181) HSP 1 Score: 52.7582 bits (125), Expect = 3.328e-8 Identity = 18/59 (30.51%), Postives = 38/59 (64.41%), Query Frame = 1 Query: 142 WSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVR 318 WS+ D +++++ G+P+Y N IDG +L+ ++A LV + +++F+HI+ + +R Sbjct: 87 WSINDVTDWLRNFGYPEYEQTFRENYIDGHKLLNLDAVALVALNVRNFEHIRHLGRGIR 145
BLAST of SAM domain-containing protein vs. Ensembl Xenopus
Match: smg8 (SMG8 nonsense mediated mRNA decay factor [Source:Xenbase;Acc:XB-GENE-965595]) HSP 1 Score: 90.8929 bits (224), Expect = 7.620e-23 Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 109 EDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDE 459 E + R P L WS + +++ GFPQY N I G++LI + S L ++G+ DF H+K I+ +R+ L I +P + R + LP R+ MG++LE K+ +G ++ +Y+ F + Sbjct: 13 EIEQRGPDCLRWSCREVGGWLRFKGFPQYEACFTQNYISGRKLIHVNCSTLPQIGVTDFQHMKEISRLIRDLLNITEPLWTRSVSLPHRDNMGLFLEKKSQTGLNTESLTYSQFIKQ 129
BLAST of SAM domain-containing protein vs. Ensembl Mouse
Match: Samd15 (sterile alpha motif domain containing 15 [Source:MGI Symbol;Acc:MGI:2685109]) HSP 1 Score: 97.0561 bits (240), Expect = 5.564e-23 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 136 LFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTD 456 L WS E A ++ D+GFPQY N I+G++LI + SNL +MGI DF+ +KAI+ R L IE+P + R I LP R+ G++ E K HSG KSD + A F + Sbjct: 478 LTWSPERVAEWISDLGFPQYKECFTENFINGQKLIHVNCSNLPQMGITDFEDMKAISYHTRVLLGIEEPLFSRSISLPYRDNKGLFFEQKGHSGVKSDSLTLAKFVE 584
BLAST of SAM domain-containing protein vs. UniProt/SwissProt
Match: sp|F6XZJ7|SAM15_MOUSE (Sterile alpha motif domain-containing protein 15 OS=Mus musculus OX=10090 GN=Samd15 PE=4 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 3.892e-22 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 136 LFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTD 456 L WS E A ++ D+GFPQY N I+G++LI + SNL +MGI DF+ +KAI+ R L IE+P + R I LP R+ G++ E K HSG KSD + A F + Sbjct: 478 LTWSPERVAEWISDLGFPQYKECFTENFINGQKLIHVNCSNLPQMGITDFEDMKAISYHTRVLLGIEEPLFSRSISLPYRDNKGLFFEQKGHSGVKSDSLTLAKFVE 584
BLAST of SAM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q95JY5|SAM15_MACFA (Sterile alpha motif domain-containing protein 15 OS=Macaca fascicularis OX=9541 GN=SAMD15 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.846e-19 Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 136 LFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIF 450 L W E A ++ +GFPQY N I G++LI + SNL +MGI +F+ +KAI+ RE L IE+P + R I LP R+ +G+YLE K H+G KSD + + F Sbjct: 536 LNWDPEKVAEWISQLGFPQYKGCFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTRELLEIEEPLFKRSISLPHRDIIGLYLEQKGHTGIKSDALTLSEF 640
BLAST of SAM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9P1V8|SAM15_HUMAN (Sterile alpha motif domain-containing protein 15 OS=Homo sapiens OX=9606 GN=SAMD15 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.451e-19 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 34 DDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIF 450 + +++ L + + E V+E+ + +L+ L W E+ A ++ +GFPQY N I G++LI + SNL +MGI +F+ +KAI+ +E L IE+P + R I LP R+ +G+YLE K H+G KSD + + F Sbjct: 510 EKEVVDLSQELKERVSEDDETQPEKGTELQFE-HLNWDPEEVAEWISQLGFPQYKECFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRDIIGLYLEQKGHTGIKSDSLTLSEF 647
BLAST of SAM domain-containing protein vs. TrEMBL
Match: K1RET5 (SAM domain-containing protein OS=Crassostrea gigas OX=29159 GN=CGI_10017842 PE=4 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.562e-37 Identity = 65/135 (48.15%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 103 DDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQSPLTNEGMF 507 +D D VP L+WSV+ A +++ IGFP Y + I +NRIDG++LI +EAS L +GI DF HIK I+ AVRE L IE+PD+ R I LPPR +GMYLE K H+G+ D +Y F + WQ PL N + Sbjct: 9 EDLKDDSVPPCLYWSVDKVAEWIEKIGFPNYKSCITSNRIDGRKLITLEASQLPNIGITDFKHIKTISKAVRELLFIEEPDWKRSISLPPRENLGMYLERKGHNGKNLDGLTYKSFLLNLKDSKWQPPLANHCLI 143
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A1S3K6N1 (sterile alpha motif domain-containing protein 15-like OS=Lingula unguis OX=7574 GN=LOC106179289 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.802e-35 Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 1 Query: 103 DDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQSPLTNEGMFSSYA 519 +D D R+P W+ E +++++GFPQY + +N IDGK+LI + AS L K+GI DF+HIK I+ ++R+ LTIE P++ R I LPPR +GMYLE K+ +G K+D+ +Y F E WQ PL+N + ++ Sbjct: 23 EDLRDERIPSCQQWTCEQVGKWIEELGFPQYKDCFVSNLIDGKKLILISASALPKIGITDFEHIKFISGSIRQLLTIEHPNWSRSISLPPRETLGMYLERKSKTGEKADELTYKRFLMNFEDYKWQPPLSNHCLILPHS 161
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A2T7PQW6 (SAM domain-containing protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_02744 PE=4 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.402e-35 Identity = 57/135 (42.22%), Postives = 90/135 (66.67%), Query Frame = 1 Query: 103 DDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQSPLTNEGMF 507 +D D RVP AL+W+ E A +++++GFP Y + N IDG+RL+ +EAS L ++GI DF+HIK I ++R+ L +E+PD+ R I +PPR+ +GMYLE+K++ G+ D +++ F + WQ PL N G+ Sbjct: 11 EDLKDERVPPALYWTTEQVAEWIEELGFPHYKSCFTTNFIDGRRLMRIEASALPRIGIVDFEHIKIIAKSIRDLLRVEEPDWTRSISIPPRSDLGMYLEMKSNRGKYMDTTTFEQFLQDYPNPKWQPPLANVGLI 145
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A2C9LJF0 (SAM domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106062900 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.095e-34 Identity = 54/135 (40.00%), Postives = 89/135 (65.93%), Query Frame = 1 Query: 103 DDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQSPLTNEGMF 507 +D D RVP AL+W+ E A++++++GFPQY I N I+G++L F+ AS ++GI DF+HIK I+ +R+ + +E+P + R I +PP+N +GMYLELK+H+G+ D +++ WQ PL+N+ + Sbjct: 10 EDLKDKRVPSALYWTTEHVADWVEELGFPQYKACILTNLINGRKLCFLHASAFPRIGITDFEHIKIISKNIRDLIYLEEPFWNRSIAVPPKNNLGMYLELKSHTGKTIDTTTFKQMYQNNPDPKWQPPLSNQCLI 144
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A433T3X1 (SAM domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_015970 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.901e-33 Identity = 55/135 (40.74%), Postives = 85/135 (62.96%), Query Frame = 1 Query: 103 DDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQSPLTNEGMF 507 +D D RVP AL+W+VE A +++++GFPQY N IDG++L + AS ++GI DF+HIK I +R+ + +E+P + R I PP+N +GMYLELK+H+G+ D +++ WQ PL+N+ M Sbjct: 10 EDLKDERVPSALYWTVEHVAEWIEELGFPQYKACFLTNMIDGRKLCCIHASAFPRIGITDFEHIKIIAKNIRDLIYLEEPYWNRSIAEPPKNNLGMYLELKSHTGKVMDTTTFKQMYLNCPDPKWQPPLSNQCMI 144
BLAST of SAM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000040150.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:46330990:46335498:-1 gene:ENSAMXG00000031813.1 transcript:ENSAMXT00000040150.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.337 bits (194), Expect = 5.246e-19 Identity = 34/85 (40.00%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 214 NRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEG 468 N I G++LI++ L ++G+ DF H+KAI+A VRE L + +P + R I PPR+ MGM+LE+K+ +G ++D +Y F ++ + Sbjct: 26 NLITGRKLIYVNCRYLPRLGMTDFQHMKAISAHVRELLGVSEPLWSRSIADPPRDNMGMFLEIKSRTGNRADSLTYKQFLNDQKA 110
BLAST of SAM domain-containing protein vs. Ensembl Nematostella
Match: EDO37353 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG04]) HSP 1 Score: 98.5969 bits (244), Expect = 1.125e-26 Identity = 46/114 (40.35%), Postives = 73/114 (64.04%), Query Frame = 1 Query: 124 VPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETE 465 P + W++ED A +++ +GF QY N ++G+RLI ++AS L +MG+ DF+HIK I+ +RE L IEDP + R I LP R +GMYLE K+ +G ++D ++ + + E Sbjct: 8 TPSCIKWTIEDVAEWIEYLGFKQYRRPFSDNLVNGRRLIQVDASTLPRMGVTDFEHIKFISKKIREALGIEDPYWNRSISLPHREVLGMYLEKKSKTGAEADILTFEEYIRQLE 121
BLAST of SAM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000045480.1 (sterile alpha motif domain containing 15 [Source:NCBI gene;Acc:101158569]) HSP 1 Score: 90.5077 bits (223), Expect = 6.271e-23 Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 136 LFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIF 450 L W AN+++ +G+PQY N+I+G++LIF+ SNL K+GI DF ++ I+A VRE L I + + I PPR+ M ++LE K+ +G ++D +Y F Sbjct: 18 LQWDCVSVANWIESLGYPQYKACFTENQINGRKLIFVNCSNLPKLGIVDFKDMQVISARVRELLGITETPWSHSIADPPRDAMALFLERKSRTGERADSLTYQQF 122
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000041461.1 (SMESG000041461.1) HSP 1 Score: 358.607 bits (919), Expect = 4.722e-128 Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 1 Query: 31 MDDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEDPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQSPLTNEGMFSSYAATGCNTMYPV 549 MDDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIE+PDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQ PLTNEGMFSSYAATGCNTMYPV Sbjct: 1 MDDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLTIEEPDYGRRIYLPPRNKMGMYLELKAHSGRKSDKSSYAIFTDETEGKIWQPPLTNEGMFSSYAATGCNTMYPV 173
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000044180.1 (SMESG000044180.1) HSP 1 Score: 58.5362 bits (140), Expect = 3.566e-11 Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 Query: 124 VPVALFWSVEDAANFMKDIGFPQYMNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKA 300 VP L+W+ E+ ANF+ + GF Y + N IDG++L M SNL K+GI ++ IK Sbjct: 18 VPSCLYWTCEEVANFIDEKGFSNYRDCFLKNFIDGRKLFLMNQSNLPKIGISKYEDIKV 76 The following BLAST results are available for this feature:
BLAST of SAM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of SAM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of SAM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of SAM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SAM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002927 ID=SMED30002927|Name=SAM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=644bpback to top protein sequence of SMED30002927-orf-1 >SMED30002927-orf-1 ID=SMED30002927-orf-1|Name=SMED30002927-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=174bp MDDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDAANFMKDIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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