mRNA export factor

Overview


Name	mRNA export factor
Smed ID	SMED30002898
Length (bp)	1233

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of mRNA export factor (SMED30002898) t-SNE clustered cells

Violin plots show distribution of expression levels for mRNA export factor (SMED30002898) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30002898

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30002898	SMESG000032008.1	SmedASXL_012311	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30002898	SMESG000032008.1	dd_Smed_v4_13194_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
zeta neoblast	SMED30002898	SMESG000032008.1	dd_Smed_v4_13194_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of mRNA export factor vs. Ensembl Human
Match: RAE1 (ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828])

HSP 1 Score: 199.904 bits (507), Expect = 1.158e-61
Identity = 91/184 (49.46%), Postives = 123/184 (66.85%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQ 669
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQ 214

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BLAST of mRNA export factor vs. Ensembl Human
Match: RAE1 (ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828])

HSP 1 Score: 201.06 bits (510), Expect = 3.809e-60
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

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Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

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Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

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BLAST of mRNA export factor vs. Ensembl Human
Match: RAE1 (ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828])

HSP 1 Score: 201.445 bits (511), Expect = 1.432e-59
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

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BLAST of mRNA export factor vs. Ensembl Celegans
Match: rae-1 (mRNA export factor rae-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93454])

HSP 1 Score: 166.392 bits (420), Expect = 2.654e-47
Identity = 82/186 (44.09%), Postives = 112/186 (60.22%), Query Frame = 1

Query:  127 IPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVN--NQP-IKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +  AP DT+  +KFS        L  GSWD T+++W          +AQQ+  AP+LD  W  DS+K FI+C D    +W++A+  V+ +  HD P+K   +I   NY C+MTGS+DK L+FWDM N  NQ  +  ++L ++VY ADV YPMAVV  A+K I VYNL+  P E K   SQLK Q+R
Sbjct:   37 VDGAPEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTFEGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQTQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIR 222

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Query:  127 IPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVN--NQP-IKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +  AP DT+  +KFS        L  GSWD T+++W          +AQQ+  AP+LD  W  DS+K FI+C D    +W++A+  V+ +  HD P+K   +I   NY C+MTGS+DK L+FWDM N  NQ  +  ++L ++VY ADV YPMAVV  A+K I VYNL+  P E K   SQLK Q+R
Sbjct:   37 VDGAPEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTFEGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQTQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIR 222

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BLAST of mRNA export factor vs. Ensembl Celegans
Match: bub-3 (Mitotic checkpoint protein bub-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XWH0])

HSP 1 Score: 76.2554 bits (186), Expect = 4.348e-15
Identity = 51/190 (26.84%), Postives = 93/190 (48.95%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDM--VNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQ--TEPVEFKQYPSQLKCQVR 675
            E  +P  P   +S ++F  + + +  L A  WD T +++E+   G    +   +   P+L C ++  +  AF     N   + +I T   +Q+  H   ++ ++F   +  S +++G WD  +K WD     N  I+ + +S  VY  DV     +VGT D+KI++Y+ +   EP++ +  P  LK Q R
Sbjct:   15 EFRVPFPPFVQISKVQFQRE-AGSRLLAASGWDGTCRVYEVGKLGDISEKLVFTHGKPLLTCTFAGYNKVAFGGVDHNV-KLADIETGNGTQLGSHALAVRCMEFNPMS--SLIVSGGWDSSVKLWDARSYGNGAIESVNVSSSVYAMDVLKHTILVGTKDRKIFMYDSRKLREPLQVRDSP--LKYQTR 198

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BLAST of mRNA export factor vs. Ensembl Celegans
Match: wdr-5.2 (WD repeat-containing protein wdr-5.2 [Source:UniProtKB/Swiss-Prot;Acc:Q93847])

HSP 1 Score: 54.6842 bits (130), Expect = 5.378e-8
Identity = 40/160 (25.00%), Postives = 73/160 (45.62%), Query Frame = 1

Query:  187 ATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDA--PIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVME----LSDKVYCADVHYPMA-----VVGTADKKIYVYNLQTEPV 633
             T + +GS+D+T++IW     G  IF +    + PV   C++ D         D    +W+  T T  +  + +   PI  +KF     Y  ++  + +  LK WD    Q ++V++      +  YC   ++ +      V G+ D K+Y++NLQT  +
Sbjct:  202 GTLIASGSFDETIRIW-CARNGNTIF-SIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKY--ILASNLNNTLKLWDY---QKLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSEDHKVYIWNLQTREI 354

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BLAST of mRNA export factor vs. Ensembl Celegans
Match: wdr-5.1 (WD repeat-containing protein wdr-5.1 [Source:UniProtKB/Swiss-Prot;Acc:Q17963])

HSP 1 Score: 50.447 bits (119), Expect = 1.344e-6
Identity = 38/165 (23.03%), Postives = 74/165 (44.85%), Query Frame = 1

Query:  166 FSTDLSPATYLM-AGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDA--PIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIK-VMELSDKVYCADVHYPMA-----VVGTADKKIYVYNLQTEPV 633
            F  + +P + L+ +GS+D++V+IW++  +     +   +   PV    ++ D +       D    +W+ A     +  V D   P+  +KF     Y  ++  + D  LK WD    + +K      +  YC   ++ +      + G+ D KIY++NLQT  +
Sbjct:  175 FCCNFNPQSSLVVSGSFDESVRIWDV--KTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKY--ILASNLDSTLKLWDFSKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREI 335

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BLAST of mRNA export factor vs. Ensembl Fly
Match: Rae1 (gene:FBgn0034646 transcript:FBtr0071683)

HSP 1 Score: 184.882 bits (468), Expect = 1.397e-54
Identity = 81/186 (43.55%), Postives = 118/186 (63.44%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            + E+   P D+VS L+FS       +L+AGSWD TV+ WE+   G  + ++ ++   PVLD CWS D +K F++  D    +W++A+  V Q+A HD P+K    +K   Y+C+MTGSWDK LKFWD  +  P+  + L ++ YCADV YPMAVVGTA++ + +Y+LQ  P E+K+  S LK Q R
Sbjct:   13 DFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRCWEVEQNGATVPKSMKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLASDQVMQVAAHDGPVKTCHMVKGPTYTCLMTGSWDKTLKFWDTRSPNPMMTINLPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQESPLKYQHR 198

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BLAST of mRNA export factor vs. Ensembl Fly
Match: CG12782 (gene:FBgn0034838 transcript:FBtr0072048)

HSP 1 Score: 102.834 bits (255), Expect = 3.129e-24
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQY--PSQLKCQVR 675
            + E+P  P+DT+S L+FS   S    + AGSWD TV+IWE+    + + +   S +    D  W+    K ++S +      W++ +  + ++ +H    +   ++       + T SWDK ++FWD      +  MEL D+ Y ADV   +AVV   D+ I  Y L+  PVE  +   P +   QVR
Sbjct:   14 DYELPNPPNDTISALEFSPRSSSWNAICAGSWDNTVRIWEVQAD-RLVPKVMNSLEGTPFDVTWNDSGNKVYLSDSSGQVTEWDLESNQLRKVGLHARAARTCHWVGP----YLATTSWDKSIRFWDPRAAIELTRMELPDRSYAADVLNDVAVVACGDRSILAYTLRGGPVEQGRMKSPGESNTQVR 196

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BLAST of mRNA export factor vs. Ensembl Fly
Match: Bub3 (gene:FBgn0025457 transcript:FBtr0339148)

HSP 1 Score: 87.4261 bits (215), Expect = 6.525e-19
Identity = 56/189 (29.63%), Postives = 94/189 (49.74%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSF--QAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSD-KVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++   P D +S +KF        Y+ A SWD T++ +++     P  + +Q F   AP+LDC +  D         DN   ++++ TQ  S I  H+ PI+ ++  +  N   ++TGSWD  +K WDM   + +   E ++ KVY   V     VV T+D+K+ +++L+       +  S LK Q R
Sbjct:    5 EFKLNNPPEDLISAVKFGP--KSNQYMAASSWDGTLRFYDV-----PANQLRQKFVQDAPLLDCAFM-DIVHVVSGSLDNQLRLFDVNTQAESIIGAHEEPIRCVEHAEYVN--GILTGSWDNTVKLWDMREKRCVGTFEQNNGKVYSMSVIDEKIVVATSDRKVLIWDLRKMDSYIMKRESSLKYQTR 183

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BLAST of mRNA export factor vs. Ensembl Fly
Match: Bub3 (gene:FBgn0025457 transcript:FBtr0085465)

HSP 1 Score: 87.4261 bits (215), Expect = 6.525e-19
Identity = 56/189 (29.63%), Postives = 94/189 (49.74%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSF--QAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSD-KVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++   P D +S +KF        Y+ A SWD T++ +++     P  + +Q F   AP+LDC +  D         DN   ++++ TQ  S I  H+ PI+ ++  +  N   ++TGSWD  +K WDM   + +   E ++ KVY   V     VV T+D+K+ +++L+       +  S LK Q R
Sbjct:    5 EFKLNNPPEDLISAVKFGP--KSNQYMAASSWDGTLRFYDV-----PANQLRQKFVQDAPLLDCAFM-DIVHVVSGSLDNQLRLFDVNTQAESIIGAHEEPIRCVEHAEYVN--GILTGSWDNTVKLWDMREKRCVGTFEQNNGKVYSMSVIDEKIVVATSDRKVLIWDLRKMDSYIMKRESSLKYQTR 183

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BLAST of mRNA export factor vs. Ensembl Fly
Match: wds (gene:FBgn0040066 transcript:FBtr0308566)

HSP 1 Score: 50.8322 bits (120), Expect = 1.235e-6
Identity = 38/175 (21.71%), Postives = 80/175 (45.71%), Query Frame = 1

Query:  133 QAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHD--APIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKV-MELSDKVYCADVHYPMA-----VVGTADKKIYVYNLQTEPV 633
            +  S+ V C  F+     +  +++GS+D++V+IW++  +     +   +   PV    ++ D +    S  D    +W+ A+    +  + D   P+  +KF     Y  ++  + D  LK WD    + +K      ++ YC   ++ +      V G+ D  +Y++NLQ++ V
Sbjct:  153 KGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDV--RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY--ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEV 320

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BLAST of mRNA export factor vs. Ensembl Zebrafish
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:393973])

HSP 1 Score: 191.045 bits (484), Expect = 1.357e-56
Identity = 85/186 (45.70%), Postives = 119/186 (63.98%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            ++E+   P D++SCL FS    P  +L+ GSW   V+ WE+   GQ + +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA H+ PI+ I +IKA NYSC+MTGSWDK LKFWD  +  P+  +++ ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

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BLAST of mRNA export factor vs. Ensembl Zebrafish
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:393973])

HSP 1 Score: 191.045 bits (484), Expect = 1.581e-56
Identity = 85/186 (45.70%), Postives = 119/186 (63.98%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            ++E+   P D++SCL FS    P  +L+ GSW   V+ WE+   GQ + +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA H+ PI+ I +IKA NYSC+MTGSWDK LKFWD  +  P+  +++ ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

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BLAST of mRNA export factor vs. Ensembl Zebrafish
Match: bub3 (BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210])

HSP 1 Score: 92.8189 bits (229), Expect = 1.527e-20
Identity = 57/186 (30.65%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D+VS +KFS   S + +L+  SWD +V++++ +       R +    APVLDC +S D T A+    D+     ++ T   + +  HDAPI+ ++F    N   ++TGSWD+ ++ WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EFKLAQGPEDSVSAVKFSP--SSSQFLLVSSWDGSVRLYDASANS---MRMKYQHLAPVLDCAFS-DPTHAWSGGLDSQLKTHDLNTDQDTIVGTHDAPIRCVEFCPEVN--VLVTGSWDQSVRLWDPRTPCNAGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

BLAST of mRNA export factor vs. Ensembl Zebrafish
Match: bub3 (BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210])

HSP 1 Score: 92.4337 bits (228), Expect = 1.870e-20
Identity = 57/186 (30.65%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D+VS +KFS   S + +L+  SWD +V++++ +       R +    APVLDC +S D T A+    D+     ++ T   + +  HDAPI+ ++F    N   ++TGSWD+ ++ WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:   18 EFKLAQGPEDSVSAVKFSP--SSSQFLLVSSWDGSVRLYDASANS---MRMKYQHLAPVLDCAFS-DPTHAWSGGLDSQLKTHDLNTDQDTIVGTHDAPIRCVEFCPEVN--VLVTGSWDQSVRLWDPRTPCNAGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 195

[Close]

BLAST of mRNA export factor vs. Ensembl Zebrafish
Match: snrnp40 (small nuclear ribonucleoprotein 40 (U5) [Source:ZFIN;Acc:ZDB-GENE-040426-978])

HSP 1 Score: 60.077 bits (144), Expect = 1.756e-9
Identity = 37/125 (29.60%), Postives = 62/125 (49.60%), Query Frame = 1

Query:  133 QAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITP-----QGQPIFRAQ-QSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQT-VSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKL 486
            Q   D+V+ L  S D    +YL++ S D +V++W+I P     +   IF+    +F+  +L C WS D +K      D F Y+W+  T+  V ++  H   +  + F        V++GS DK+L
Sbjct:  222 QGHGDSVTGLSLSAD---GSYLLSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYIWDTTTRRIVYKLPGHAGSVNEVAF--HPEEPIVLSGSSDKRL 341

[Close]

BLAST of mRNA export factor vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 97.0561 bits (240), Expect = 6.209e-22
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ QAP D +S +KFS + S   +L+  SWD +V+++++        R +     PVLDC + +D T A+    D+   M ++ T   S +  HDAPI+ +++    N   ++TGSWD+ +K WD             DKVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:   10 EFKLNQAPEDGISAVKFSPNTS--QFLLVSSWDSSVRLYDVPAN---TLRLKYQHAGPVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDGESVVGSHDAPIRCVEYCPEVN--VIVTGSWDQTVKLWDPRTPCNAGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 187

[Close]

BLAST of mRNA export factor vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 97.0561 bits (240), Expect = 6.387e-22
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ QAP D +S +KFS + S   +L+  SWD +V+++++        R +     PVLDC + +D T A+    D+   M ++ T   S +  HDAPI+ +++    N   ++TGSWD+ +K WD             DKVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:   12 EFKLNQAPEDGISAVKFSPNTS--QFLLVSSWDSSVRLYDVPAN---TLRLKYQHAGPVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDGESVVGSHDAPIRCVEYCPEVN--VIVTGSWDQTVKLWDPRTPCNAGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 189

[Close]

BLAST of mRNA export factor vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 96.6709 bits (239), Expect = 9.963e-22
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ QAP D +S +KFS + S   +L+  SWD +V+++++        R +     PVLDC + +D T A+    D+   M ++ T   S +  HDAPI+ +++    N   ++TGSWD+ +K WD             DKVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EFKLNQAPEDGISAVKFSPNTS--QFLLVSSWDSSVRLYDVPAN---TLRLKYQHAGPVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDGESVVGSHDAPIRCVEYCPEVN--VIVTGSWDQTVKLWDPRTPCNAGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

BLAST of mRNA export factor vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 96.6709 bits (239), Expect = 1.065e-21
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ QAP D +S +KFS + S   +L+  SWD +V+++++        R +     PVLDC + +D T A+    D+   M ++ T   S +  HDAPI+ +++    N   ++TGSWD+ +K WD             DKVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:   12 EFKLNQAPEDGISAVKFSPNTS--QFLLVSSWDSSVRLYDVPAN---TLRLKYQHAGPVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDGESVVGSHDAPIRCVEYCPEVN--VIVTGSWDQTVKLWDPRTPCNAGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 189

[Close]

BLAST of mRNA export factor vs. Ensembl Xenopus
Match: mindy4 (MINDY lysine 48 deubiquitinase 4 [Source:Xenbase;Acc:XB-GENE-6456867])

HSP 1 Score: 55.4546 bits (132), Expect = 5.998e-8
Identity = 40/177 (22.60%), Postives = 78/177 (44.07%), Query Frame = 1

Query:  124 EIPQAPSDTVSC-------LKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIA-TQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQP--IKVM-ELSDKVYCADVHYPMAVVGTADKKIYVYNLQ 621
            E+PQ     + C       ++F+ D     Y M    DKT+K+W   P    + +        VLD   S+D+++     +D    +W++A  Q V +   H   +  ++F +      +M+GS D  ++ WD  + +P  I+++ E  D +    +     + G+ D  +  Y+L+
Sbjct:   12 ELPQKLQHKLECNQGAVRAVRFNVD---GNYCMTCGSDKTLKLW--NPHKGTLLKTYSGHGYEVLDTAGSYDNSQMCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATV--IMSGSIDSSIRCWDCRSRRPEAIQILDEAKDGISSIKISDHEILAGSVDGNLRRYDLR 181

[Close]

BLAST of mRNA export factor vs. Ensembl Mouse
Match: Rae1 (ribonucleic acid export 1 [Source:MGI Symbol;Acc:MGI:1913929])

HSP 1 Score: 199.904 bits (507), Expect = 6.188e-60
Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. Ensembl Mouse
Match: Rae1 (ribonucleic acid export 1 [Source:MGI Symbol;Acc:MGI:1913929])

HSP 1 Score: 189.504 bits (480), Expect = 4.732e-58
Identity = 86/173 (49.71%), Postives = 115/173 (66.47%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVE 636
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P E
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

[Close]

BLAST of mRNA export factor vs. Ensembl Mouse
Match: Bub3 (BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463])

HSP 1 Score: 88.1965 bits (217), Expect = 6.052e-19
Identity = 54/186 (29.03%), Postives = 94/186 (50.54%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D +S +KFS + S   +L+  SWD +V+++++        R +      VLDC + +D T A+    D+   M ++ T   + +  HDAPI+ +++    N   ++TGSWD+ +K WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EFKLNQPPEDGISSVKFSPNTS--QFLLVSSWDTSVRLYDVPANS---MRLKYQHTGAVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVN--VMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

BLAST of mRNA export factor vs. Ensembl Mouse
Match: Bub3 (BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463])

HSP 1 Score: 88.1965 bits (217), Expect = 6.322e-19
Identity = 54/186 (29.03%), Postives = 94/186 (50.54%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D +S +KFS + S   +L+  SWD +V+++++        R +      VLDC + +D T A+    D+   M ++ T   + +  HDAPI+ +++    N   ++TGSWD+ +K WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EFKLNQPPEDGISSVKFSPNTS--QFLLVSSWDTSVRLYDVPANS---MRLKYQHTGAVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVN--VMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

BLAST of mRNA export factor vs. Ensembl Mouse
Match: Bub3 (BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463])

HSP 1 Score: 72.0182 bits (175), Expect = 5.180e-14
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVN-------NQPIKVMELSDKV 546
            E ++ Q P D +S +KFS + S   +L+  SWD +V+++++        R +      VLDC + +D T A+    D+   M ++ T   + +  HDAPI+ +++    N   ++TGSWD+ +K WD          +QP K++ L  + 
Sbjct:    6 EFKLNQPPEDGISSVKFSPNTS--QFLLVSSWDTSVRLYDVPANS---MRLKYQHTGAVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNV--MVTGSWDQTVKLWDPRTPCNAGTFSQPEKLLNLGRRA 147

[Close]

BLAST of mRNA export factor vs. UniProt/SwissProt
Match: sp|Q5RF99|RAEL1_PONAB (mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.829e-59
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. UniProt/SwissProt
Match: sp|P78406|RAE1L_HUMAN (mRNA export factor OS=Homo sapiens OX=9606 GN=RAE1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.829e-59
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. UniProt/SwissProt
Match: sp|Q4R6D2|RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis OX=9541 GN=RAE1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.426e-59
Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA + + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERYYCADVIYPMAVVATAGRGLIVYQLENQPSEFRRIESPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. UniProt/SwissProt
Match: sp|Q3SWS8|RAE1L_RAT (mRNA export factor OS=Rattus norvegicus OX=10116 GN=Rae1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.613e-59
Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. UniProt/SwissProt
Match: sp|A5GFN6|RAEL1_PIG (mRNA export factor OS=Sus scrofa OX=9823 GN=RAE1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.892e-59
Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. TrEMBL
Match: A0A430QT51 (mRNA export factor OS=Schistosoma bovis OX=6184 GN=DC041_0003444 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.457e-62
Identity = 91/183 (49.73%), Postives = 122/183 (66.67%), Query Frame = 1

Query:  124 EIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQV 672
            E+   P DTVSCL+FS +    T+L A SWD  ++IWE+   G  I +A+Q  Q PV   CWS D +K F    D    MW++ + T +Q+ VHDAP+K   FI A NYSC+MTGSWDK+L+FWD    QPI  ++L +++YCADVHYP+A+VGTA ++I+VYNL+  P +F Q  S LK QV
Sbjct:   31 EVQSPPGDTVSCLRFSPESMQTTFLAATSWDNRIRIWEVQANGSTIPKAEQMHQGPVFGACWSTDGSKIFSVSADKTAQMWDLGSNTFAQVGVHDAPVKTAHFITAPNYSCLMTGSWDKRLRFWDTRQPQPILNLDLPERIYCADVHYPLALVGTAGRQIFVYNLENGPTQFNQLESPLKFQV 213

[Close]

BLAST of mRNA export factor vs. TrEMBL
Match: V4A6N0 (WD_REPEATS_REGION domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_216798 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.535e-61
Identity = 99/186 (53.23%), Postives = 128/186 (68.82%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            + E+   P D+VSCLKFS    P+T+L+AGSWD  V+ WEI   GQ + +AQQS   PVL   WS D TK F +  D    MW++++    Q+AVHDAPIK + +IKA NYSC+MTGSWDK LKFWD  +  PI  ++L +KVYCADV YPMAVVGT+++ I +Y L+ +P EFK+  SQLK Q R
Sbjct:   32 DFEVTSPPDDSVSCLKFSPGTLPSTFLIAGSWDNNVRCWEIQQNGQTVPKAQQSHTGPVLGVDWSDDGTKVFTASCDKTAKMWDLSSNQFMQVAVHDAPIKTVHWIKAQNYSCLMTGSWDKTLKFWDTRSPNPILSIQLPEKVYCADVKYPMAVVGTSNRGIIIYQLENQPREFKRVESQLKYQSR 217

[Close]

BLAST of mRNA export factor vs. TrEMBL
Match: A0A2H1BWF4 (Nucleoporin GLE2 domain protein OS=Fasciola hepatica OX=6192 GN=D915_13695 PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.011e-60
Identity = 91/186 (48.92%), Postives = 123/186 (66.13%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E++ P  PSDTVSCL+FS +     +L A SWD  V+IWE+   G  I +A+Q  Q P L  CWS D  + F    D    MW++   T +Q+A HDAPIK +  I A NY+C+MTGSWDK+L+FWD+   QPI  ++L ++VYCADVHYP+A+VGTA++++  YNL+  P EF +  S LK QVR
Sbjct:   30 EVQCP--PSDTVSCLRFSPESLQTVFLAATSWDNRVRIWEVQGNGTTIPKAEQMHQGPALSACWSKDGAQLFSVSADKSAQMWDLGANTFTQVAAHDAPIKTVHLISAPNYTCLMTGSWDKRLRFWDLRQPQPILNLDLPERVYCADVHYPLAIVGTANRQVIAYNLENGPTEFTRIESPLKFQVR 213

[Close]

BLAST of mRNA export factor vs. TrEMBL
Match: A0A2K5ISV6 (Ribonucleic acid export 1 OS=Colobus angolensis palliatus OX=336983 GN=RAE1 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.846e-60
Identity = 93/186 (50.00%), Postives = 125/186 (67.20%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK QVR
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQVR 216

[Close]

BLAST of mRNA export factor vs. TrEMBL
Match: A0A2K6DZM3 (Ribonucleic acid export 1 OS=Macaca nemestrina OX=9545 GN=RAE1 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.846e-60
Identity = 93/186 (50.00%), Postives = 125/186 (67.20%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+  +P D++ CL FS    P  +L+AGSW   V+ WE+   GQ I +AQQ    PVLD CWS D +K F +  D    MW++++    QIA HDAP+K I +IKA NYSCVMTGSWDK LKFWD  ++ P+ V++L ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK QVR
Sbjct:   31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQVR 216

[Close]

BLAST of mRNA export factor vs. Ensembl Cavefish
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:103040569])

HSP 1 Score: 191.815 bits (486), Expect = 6.420e-57
Identity = 86/186 (46.24%), Postives = 119/186 (63.98%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            ++E+   P D++SCL FS    P  +L+ GSW   V+ WE+   GQ + +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA H+ PI+ I +IKA NYSCVMTGSWDK LKFWD  +  P+  +++ ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAMQIAQHEGPIRTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. Ensembl Cavefish
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:103028940])

HSP 1 Score: 94.3597 bits (233), Expect = 3.008e-21
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D++S +KFS   S   +L+  SWD TV+++++   G    R +    APVLDC + +D T A+    DN   M ++ T   + +  HDAPI+ +++    N   ++TGSWD  ++ WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EFKLNQLPDDSISAVKFSPTTS--QFLLVSSWDSTVRLYDV---GGNSMRMKYQHLAPVLDCAF-YDPTHAWSGGLDNQLKMHDLNTDQDTIVGTHDAPIRCVEYCPEVN--VMVTGSWDMSVRLWDPRTPCNAGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

BLAST of mRNA export factor vs. Ensembl Cavefish
Match: snrnp40 (small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:103032740])

HSP 1 Score: 57.3806 bits (137), Expect = 1.095e-8
Identity = 34/125 (27.20%), Postives = 63/125 (50.40%), Query Frame = 1

Query:  133 QAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITP-----QGQPIFRAQ-QSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTV-SQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKL 486
            Q   D+V+ L  S++    +YL++ S D +V++W+I P     +   IF+    +F+  +L C WS D +K      D F Y+W+  ++ +  ++  H   +  + F        V++GS DK+L
Sbjct:  222 QGHGDSVTGLSLSSE---GSYLLSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSSDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAF--HPEEPIVLSGSSDKRL 341

[Close]

BLAST of mRNA export factor vs. Ensembl Cavefish
Match: wdr83 (WD repeat domain containing 83 [Source:NCBI gene;Acc:436702])

HSP 1 Score: 53.9138 bits (128), Expect = 8.683e-8
Identity = 37/161 (22.98%), Postives = 77/161 (47.83%), Query Frame = 1

Query:  151 VSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIAT-QTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNN--QPIKVM-ELSDKVYCADVHYPMAVVGTADKKIYVYNLQ 621
            V  + F+ D     YL+    DK++K+W ++     + +        VLD   S+D+++     +D    +W++AT Q   ++  H   +  ++F +    + +++GS D  ++ WD  +   +PI+V+ E  D V    V     + G+ D ++  Y+L+
Sbjct:   28 VRAVHFNAD---GNYLLTCGSDKSLKLWSVSRG--ALLKTYTGHGYEVLDADGSYDNSQLCSCSSDKTVILWDVATGQVTRKLRGHAGKVNCVRFNEEA--TVMLSGSIDGTVRCWDTRSRRMEPIQVLDEARDGVSSLKVSEHELLTGSVDGRLRRYDLR 181

[Close]

BLAST of mRNA export factor vs. Ensembl Cavefish
Match: snrnp40 (small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:103032740])

HSP 1 Score: 52.7582 bits (125), Expect = 3.702e-7
Identity = 28/107 (26.17%), Postives = 54/107 (50.47%), Query Frame = 1

Query:  133 QAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITP-----QGQPIFRAQ-QSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTV-SQIAVHDAPIKIIKF 432
            Q   D+V+ L  S++    +YL++ S D +V++W+I P     +   IF+    +F+  +L C WS D +K      D F Y+W+  ++ +  ++  H   +  + F
Sbjct:  222 QGHGDSVTGLSLSSE---GSYLLSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSSDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAF 325

[Close]

BLAST of mRNA export factor vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007594.1 (pep scaffold:Pmarinus_7.0:GL477618:2658:11743:-1 gene:ENSPMAG00000006850.1 transcript:ENSPMAT00000007594.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 196.052 bits (497), Expect = 2.548e-59
Identity = 90/186 (48.39%), Postives = 120/186 (64.52%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+   P D++SCL FS    P  YL+AGSW   V+ WE+   GQ I +AQQ    P+LD CWS D TK F + +D    MW++ +    Q+A HD PIK I +IKA +YSC+MTGSWDK LKFWD     P+  ++L ++ YCADV YPMAVV TA++ + VY L+ +P E+K+  S LK Q R
Sbjct:   29 DIEVTSPPDDSISCLSFSPAALPGNYLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPILDVCWSDDGTKVFTASSDKTAKMWDLNSNQAIQVAQHDGPIKTIHWIKAPSYSCIMTGSWDKSLKFWDTRTPNPLLTIQLPERCYCADVVYPMAVVATAERGLVVYQLENQPSEYKRIDSPLKHQHR 214

[Close]

BLAST of mRNA export factor vs. Ensembl Sea Lamprey
Match: bub3 (BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210])

HSP 1 Score: 87.4261 bits (215), Expect = 1.698e-19
Identity = 52/186 (27.96%), Postives = 96/186 (51.61%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q+P D ++ +KF  + S   +L+  SWD TV++ ++T   Q   R + +   PVLDC +  D T A+    DN   ++++ ++    +  H+A ++ ++F    N   ++TGSWD+ +K WD             ++VY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    9 EFKLSQSPEDGITAVKFGPNSS--QFLLVSSWDCTVRLHDVTGNTQ---RVKYTHAGPVLDCAF-QDMTHAWSGGLDNTVKLYDLNSEQEIMVGTHEAAVRCVEFCPEVN--VMVTGSWDQTVKLWDPRTPCNAGSFPQPERVYTMAVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 186

[Close]

BLAST of mRNA export factor vs. Ensembl Sea Lamprey
Match: snrnp40 (small nuclear ribonucleoprotein 40 (U5) [Source:ZFIN;Acc:ZDB-GENE-040426-978])

HSP 1 Score: 55.0694 bits (131), Expect = 1.192e-8
Identity = 29/107 (27.10%), Postives = 55/107 (51.40%), Query Frame = 1

Query:  133 QAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITP-----QGQPIFRAQ-QSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTV-SQIAVHDAPIKIIKF 432
            +  +D+V+ L  S D    +YL++ + D +V+IW+I P     +   IF+    +F+  +L C WSHD +K      D F Y+W+  ++ +  ++  H   +  + F
Sbjct:  223 KGHNDSVTGLSLSPD---GSYLLSNAMDNSVRIWDIRPFAPMERCVKIFQGNVHNFEKNLLKCSWSHDGSKVSAGSADRFVYIWDTTSRRILYKLPGHAGSVNDVAF 326

[Close]

BLAST of mRNA export factor vs. Ensembl Yeast
Match: GLE2 (RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1 [Source:SGD;Acc:S000000909])

HSP 1 Score: 124.405 bits (311), Expect = 1.569e-32
Identity = 71/190 (37.37%), Postives = 104/190 (54.74%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLM--AGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKA--TNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +I I     D++S + FS    P    M  A SWD  V+IW++   G P  RAQ    +PVL   WS+D TK      DN   +++IA+    QI +H APIK+++F++   +N  C++TGSWDK +K+WDM   QP+  + + ++VY  D    + VV TA++ I + NL      FK   S LK Q R
Sbjct:   28 DIVINSPAEDSISDIAFS----PQQDFMFSASSWDGKVRIWDVQ-NGVPQGRAQHESSSPVLCTRWSNDGTKVASGGCDNALKLYDIASGQTQQIGMHSAPIKVLRFVQCGPSNTECIVTGSWDKTIKYWDMRQPQPVSTVMMPERVYSMDNKQSLLVVATAERHIAIINLANPTTIFKATTSPLKWQTR 212

[Close]

BLAST of mRNA export factor vs. Ensembl Nematostella
Match: EDO47476 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMB7])

HSP 1 Score: 179.874 bits (455), Expect = 3.756e-53
Identity = 86/186 (46.24%), Postives = 118/186 (63.44%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +IE+   P DT++ LKF      A +L+A SW   V+ WE+   GQ + +AQQ+   P+LDC W  D TK F +  D    MW++ +    Q+A HDAPIK   +I+A NYSC+MTGSWDKKLKFWD  +  P+  ++L ++ YCADV YPMA+VGTA + I  Y L+ +P E+K+  S LK Q R
Sbjct:    3 DIEVQSPPDDTITSLKF---CPKADFLIASSWANDVRCWEVKENGQTVPKAQQTHTGPILDCTWHDDGTKVFTASADKQCKMWDLNSNQAVQVAQHDAPIKTCNWIQAPNYSCLMTGSWDKKLKFWDTRSPNPMLSIDLPERCYCADVVYPMAIVGTAQRGIICYQLENQPSEYKRMDSPLKYQNR 185

[Close]

BLAST of mRNA export factor vs. Ensembl Nematostella
Match: EDO43356 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYP7])

HSP 1 Score: 92.4337 bits (228), Expect = 5.729e-21
Identity = 56/186 (30.11%), Postives = 94/186 (50.54%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ QAP D +S +KFS   + +++L+  SWD +V+++++        R + +    VLDCC+  D+  AF    DN   M ++    V  I  HD PI+ + + +      +++GSWD  +K WD    Q     +   KVY   +     VVGTA +K+ V++L+      ++  S LK Q R
Sbjct:    8 EFKLGQAPEDGISAVKFSP--TSSSFLLVSSWDTSVRLYDVQNDD---MRLKYNHSYSVLDCCF-QDAVHAFSGGLDNNLKMCDLNQNQVQTIGSHDDPIRCVDYCQPLGL--IVSGSWDSSIKLWDPRQKQCTGTYKQPAKVYTLALAGERLVVGTAGRKVMVWDLRNMGYVQQRRESSLKYQTR 185

[Close]

BLAST of mRNA export factor vs. Ensembl Nematostella
Match: EDO26155 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TCR0])

HSP 1 Score: 81.6481 bits (200), Expect = 7.219e-19
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1

Query:  418 KIIKFIKATNYSC-VMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            +I+  +   NY      GSWDKKLKFWD  +  P+  ++L ++ YCADV YPMA+VGTA + I  Y L+ +P E+K+  S LK Q R
Sbjct:    1 QIVALMSFMNYKRECFRGSWDKKLKFWDTRSPNPMLSIDLPERCYCADVVYPMAIVGTAQRGIICYQLENQPSEYKRMDSPLKYQNR 87

[Close]

BLAST of mRNA export factor vs. Ensembl Nematostella
Match: EDO33297 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSL6])

HSP 1 Score: 52.7582 bits (125), Expect = 1.217e-7
Identity = 39/179 (21.79%), Postives = 82/179 (45.81%), Query Frame = 1

Query:  121 IEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDA--PIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKV-MELSDKVYCADVHYPMA-----VVGTADKKIYVYNLQTEPV 633
            ++  +  S+ V C  F+     +  +++GS+D++V+IW++  +     +   +   PV    ++ D      S  D    +W+ A+    +  + D   P+  +KF     Y  ++  + D  LK WD    + +K      ++ YC   ++ +      V G+ D K+Y++NLQ++ V
Sbjct:  142 LKTLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVTAVHFNRDGALIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY--ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCVFANFSVTGGKWIVSGSEDHKVYIWNLQSKEV 313

[Close]

BLAST of mRNA export factor vs. Ensembl Nematostella
Match: EDO44093 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWV7])

HSP 1 Score: 51.2174 bits (121), Expect = 4.446e-7
Identity = 39/169 (23.08%), Postives = 80/169 (47.34%), Query Frame = 1

Query:  124 EIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAV-HDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDK-VYCADVHYPMAVVGTADKKIYVYNLQT 624
             + +   D V CL+F         ++ GS D+T+++W++   G+ I R  +  +  V   C   D+ +      D    +W+I   T   +   H   +  ++F + T    +++GS D  ++ WDM   + + V++  +  V C +   P  + G+ADK I ++N+++
Sbjct:  143 NVLKGHMDVVLCLQFDR-----RRVVTGSSDRTIRMWDVRS-GRSI-RKMKGHKGGVR--CLQFDNERIISGSWDMTIMVWHIVKFTRLHVLYGHKGCVSCLRFDENT----LVSGSHDSTIRVWDMRTWECVLVLQGHEGAVSCLEFDAPFVLSGSADKTIKLWNVES 298

[Close]

BLAST of mRNA export factor vs. Ensembl Medaka
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:101160646])

HSP 1 Score: 194.512 bits (493), Expect = 6.390e-58
Identity = 88/186 (47.31%), Postives = 120/186 (64.52%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            ++E+   P D++SCL FS    P  +L+AGSW   V+ WE+   GQ + +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA HD PIK I +IKA NYSC+MTGSWDK LKFWD  +  P+  +++ ++ YCADV YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DVEVTSPPDDSISCLAFSPPTMPGNFLIAGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQAMQIAQHDGPIKAIHWIKAPNYSCIMTGSWDKTLKFWDTRSPTPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHR 216

[Close]

BLAST of mRNA export factor vs. Ensembl Medaka
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:101160646])

HSP 1 Score: 164.081 bits (414), Expect = 1.765e-46
Identity = 80/186 (43.01%), Postives = 109/186 (58.60%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            ++E+   P D++SCL FS    P  +L+AGSW   V+ WE+   GQ + +AQQ    PVLD CWS D +K F +  D    MW++ +    QIA HD PIK I +IKA NYSC+MTGSWDK LK    ++   ++           D  YPMAVV TA++ + VY L+ +P EF++  S LK Q R
Sbjct:   31 DVEVTSPPDDSISCLAFSPPTMPGNFLIAGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQAMQIAQHDGPIKAIHWIKAPNYSCIMTGSWDKTLKVRQFIHRFHVERR-------APDSVYPMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHR 209

[Close]

BLAST of mRNA export factor vs. Ensembl Medaka
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:101164351])

HSP 1 Score: 93.5893 bits (231), Expect = 6.801e-21
Identity = 57/186 (30.65%), Postives = 97/186 (52.15%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D++S +KFS   S A +L+  SWD TV+++++   G    R +    APVLDC + +D T ++    D    M ++ T   + +  HDAPI+ +++    N   ++TGSWD+ ++ WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EYKLNQGPEDSISAVKFSP--STAQFLLVSSWDCTVRLFDV---GGNTMRMKYQHTAPVLDCAF-YDPTHSWSGGLDAQLKMHDLNTDQDTIVGAHDAPIRCVEYCPEVN--VMVTGSWDRSVRLWDPRTPCNAGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            E ++ Q P D++S +KFS   S A +L+  SWD TV+++++   G    R +    APVLDC + +D T ++    D    M ++ T   + +  HDAPI+ +++    N   ++TGSWD+ ++ WD             +KVY   V     +VGTA +++ V++L+      ++  S LK Q R
Sbjct:    6 EYKLNQGPEDSISAVKFSP--STAQFLLVSSWDCTVRLFDV---GGNTMRMKYQHTAPVLDCAF-YDPTHSWSGGLDAQLKMHDLNTDQDTIVGAHDAPIRCVEYCPEVN--VMVTGSWDRSVRLWDPRTPCNAGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183

[Close]

BLAST of mRNA export factor vs. Ensembl Medaka
Match: snrnp40 (small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:101156339])

HSP 1 Score: 57.3806 bits (137), Expect = 9.773e-9
Identity = 36/125 (28.80%), Postives = 62/125 (49.60%), Query Frame = 1

Query:  133 QAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITP-----QGQPIFRAQ-QSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTV-SQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKL 486
               SD+V+ L  S   S  +YL++ S D TV+IW++ P     +   IF+    +F+  +L C WS D +K      D F Y+W+  ++ +  ++  H   +  + F        V++GS DK+L
Sbjct:  222 HGHSDSVTGLSLS---SEGSYLLSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVYIWDTTSRRILYKLPGHAGSVNEVVF--HPEEPVVLSGSSDKRL 341

[Close]

BLAST of mRNA export factor vs. Planmine SMEST
Match: SMESG000032008.1 (SMESG000032008.1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.931e-140
Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 1

Query:   46 MSFNNSFFKXXXXXXXXXXXXXXXEIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            MSFNNSFFKNGQNANQNTNQSNAQEIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQ+R
Sbjct:    1 MSFNNSFFKNGQNANQNTNQSNAQEIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQLR 210

[Close]

BLAST of mRNA export factor vs. Planmine SMEST
Match: SMESG000032005.1 (SMESG000032005.1)

HSP 1 Score: 141.354 bits (355), Expect = 4.315e-39
Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = 1

Query:  361 MWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            MW++A    ++IA HDAPIK I +I+A +Y+CVMTG WDKKLKFWD+ +  P+  ++LSD++YCA VHYPMA V T DK ++VYNL+  PVE+K+  SQLK Q R
Sbjct:    1 MWDLAANQTTKIAAHDAPIKTIHYIQAPSYTCVMTGGWDKKLKFWDLRSQNPMSSIDLSDRIYCAAVHYPMAAVATGDKSVFVYNLENGPVEYKRLESQLKYQSR 105

[Close]

BLAST of mRNA export factor vs. Planmine SMEST
Match: SMESG000016111.1 (SMESG000016111.1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.360e-18
Identity = 55/193 (28.50%), Postives = 94/193 (48.70%), Query Frame = 1

Query:  118 EIEIPQAPSDTVSCLKFSTDLSPATYLMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWD-MVNNQ--PIKVMELSDKVYCADVHYPMA----VVGTADKKIYVYNLQTEPVEFKQYPSQLKCQVR 675
            + ++   P+DT+S + F  + S   YL+A SWD  + ++++   G+   R +  ++ P+LDCC+S D+  AF     N    ++  T   + +  H  PI  + F  +TN S ++TGSWD  +  WD  VN     +K +     VY  D          VVGT  + +Y+++++      +   S LK Q R
Sbjct:    4 QFKLSNPPTDTISNVTFQPNSS--QYLLASSWDTYLHLYDVNTNGK---RLKLDYEYPILDCCFS-DANSAFAGGIGNALKFYDCNTGKSNVVGYHKQPISQVHF--STNESLLITGSWDSTVGLWDPRVNGHQSAVKFLSQPGDVYTLDTASTSGGTYLVVGTEKRYVYIWDMRKLDQAVQMRDSSLKYQTR 188

[Close]

BLAST of mRNA export factor vs. Planmine SMEST
Match: SMESG000008529.1 (SMESG000008529.1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.906e-7
Identity = 36/148 (24.32%), Postives = 72/148 (48.65%), Query Frame = 1

Query:  196 LMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNIAT-QTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVM-----ELSDKVYCADVHYPMAVVGTADKKIYVYNLQ 621
            ++ GS+DKT K+W  +     ++   +   A V+   ++  ST       D    +W++ + + VS +  H A +  ++F +A N   ++TGS+D  +  WD+ N + +  +     E+S  V+  D  Y      + DK I +++L+
Sbjct:  150 IVTGSFDKTAKMW--SANDGSLYHTFKGHTAEVVCVQFNPSSTLVGTGGMDTLAMLWDVESGKCVSNLQGHTAEVISLQFGQAHNGKHLITGSFDHTVILWDVHNGRRVSQLIGHDAEISAAVFNFDGTY--VATASMDKSIKIWDLR 293

[Close]

BLAST of mRNA export factor vs. Planmine SMEST
Match: SMESG000008519.1 (SMESG000008519.1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.916e-7
Identity = 36/148 (24.32%), Postives = 72/148 (48.65%), Query Frame = 1

Query:  196 LMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCTDNFGYMWNI-ATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFWDMVNNQPIKVM-----ELSDKVYCADVHYPMAVVGTADKKIYVYNLQ 621
            ++ GS+DKT K+W  +     ++   +   A V+   ++  ST       D    +W++ + + VS +  H A +  ++F +A N   ++TGS+D  +  WD+ N + +  +     E+S  V+  D  Y      + DK I +++L+
Sbjct:   28 IVTGSFDKTAKMW--SANDGSLYHTFKGHTAEVVCVQFNPSSTLVGTGGMDTLAMLWDVESGKCVSNLQGHTAEVISLQFGQAHNGKHLITGSFDHTVILWDVHNGRRVSQLIGHDAEISAAVFNFDGTY--VATASMDKSIKIWDLR 171

The following BLAST results are available for this feature:

BLAST of mRNA export factor vs. Ensembl Human
BLAST of mRNA export factor vs. Ensembl Celegans
BLAST of mRNA export factor vs. Ensembl Fly
BLAST of mRNA export factor vs. Ensembl Zebrafish
BLAST of mRNA export factor vs. Ensembl Xenopus
BLAST of mRNA export factor vs. Ensembl Mouse
BLAST of mRNA export factor vs. UniProt/SwissProt
BLAST of mRNA export factor vs. TrEMBL
BLAST of mRNA export factor vs. Ensembl Cavefish
BLAST of mRNA export factor vs. Ensembl Sea Lamprey
BLAST of mRNA export factor vs. Ensembl Yeast
BLAST of mRNA export factor vs. Ensembl Nematostella
BLAST of mRNA export factor vs. Ensembl Medaka
BLAST of mRNA export factor vs. Planmine SMEST

BLAST of mRNA export factor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RAE1	1.158e-61	49.46	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	3.809e-60	49.46	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	3.809e-60	49.46	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	3.809e-60	49.46	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	1.432e-59	49.46	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]

BLAST of mRNA export factor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rae-1	2.654e-47	44.09	mRNA export factor rae-1 [Source:UniProtKB/Swiss-...	[more]
rae-1	2.654e-47	44.09	mRNA export factor rae-1 [Source:UniProtKB/Swiss-...	[more]
bub-3	4.348e-15	26.84	Mitotic checkpoint protein bub-3 [Source:UniProtK...	[more]
wdr-5.2	5.378e-8	25.00	WD repeat-containing protein wdr-5.2 [Source:UniP...	[more]
wdr-5.1	1.344e-6	23.03	WD repeat-containing protein wdr-5.1 [Source:UniP...	[more]

BLAST of mRNA export factor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rae1	1.397e-54	43.55	gene:FBgn0034646 transcript:FBtr0071683	[more]
CG12782	3.129e-24	30.32	gene:FBgn0034838 transcript:FBtr0072048	[more]
Bub3	6.525e-19	29.63	gene:FBgn0025457 transcript:FBtr0339148	[more]
Bub3	6.525e-19	29.63	gene:FBgn0025457 transcript:FBtr0085465	[more]
wds	1.235e-6	21.71	gene:FBgn0040066 transcript:FBtr0308566	[more]

BLAST of mRNA export factor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rae1	1.357e-56	45.70	ribonucleic acid export 1 [Source:NCBI gene;Acc:39...	[more]
rae1	1.581e-56	45.70	ribonucleic acid export 1 [Source:NCBI gene;Acc:39...	[more]
bub3	1.527e-20	30.65	BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:Z...	[more]
bub3	1.870e-20	30.65	BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:Z...	[more]
snrnp40	1.756e-9	29.60	small nuclear ribonucleoprotein 40 (U5) [Source:ZF...	[more]

BLAST of mRNA export factor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
bub3	6.209e-22	31.18	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	6.387e-22	31.18	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	9.963e-22	31.18	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	1.065e-21	31.18	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
mindy4	5.998e-8	22.60	MINDY lysine 48 deubiquitinase 4 [Source:Xenbase;A...	[more]

BLAST of mRNA export factor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rae1	6.188e-60	49.46	ribonucleic acid export 1 [Source:MGI Symbol;Acc:M...	[more]
Rae1	4.732e-58	49.71	ribonucleic acid export 1 [Source:MGI Symbol;Acc:M...	[more]
Bub3	6.052e-19	29.03	BUB3 mitotic checkpoint protein [Source:MGI Symbol...	[more]
Bub3	6.322e-19	29.03	BUB3 mitotic checkpoint protein [Source:MGI Symbol...	[more]
Bub3	5.180e-14	28.67	BUB3 mitotic checkpoint protein [Source:MGI Symbol...	[more]

BLAST of mRNA export factor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q5RF99\|RAEL1_PONAB	1.829e-59	49.46	mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1...	[more]
sp\|P78406\|RAE1L_HUMAN	1.829e-59	49.46	mRNA export factor OS=Homo sapiens OX=9606 GN=RAE1...	[more]
sp\|Q4R6D2\|RAE1L_MACFA	3.426e-59	49.46	mRNA export factor OS=Macaca fascicularis OX=9541 ...	[more]
sp\|Q3SWS8\|RAE1L_RAT	3.613e-59	49.46	mRNA export factor OS=Rattus norvegicus OX=10116 G...	[more]
sp\|A5GFN6\|RAEL1_PIG	3.892e-59	49.46	mRNA export factor OS=Sus scrofa OX=9823 GN=RAE1 P...	[more]

BLAST of mRNA export factor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A430QT51	5.457e-62	49.73	mRNA export factor OS=Schistosoma bovis OX=6184 GN...	[more]
V4A6N0	4.535e-61	53.23	WD_REPEATS_REGION domain-containing protein OS=Lot...	[more]
A0A2H1BWF4	2.011e-60	48.92	Nucleoporin GLE2 domain protein OS=Fasciola hepati...	[more]
A0A2K5ISV6	4.846e-60	50.00	Ribonucleic acid export 1 OS=Colobus angolensis pa...	[more]
A0A2K6DZM3	4.846e-60	50.00	Ribonucleic acid export 1 OS=Macaca nemestrina OX=...	[more]

BLAST of mRNA export factor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rae1	6.420e-57	46.24	ribonucleic acid export 1 [Source:NCBI gene;Acc:10...	[more]
bub3	3.008e-21	31.18	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
snrnp40	1.095e-8	27.20	small nuclear ribonucleoprotein U5 subunit 40 [Sou...	[more]
wdr83	8.683e-8	22.98	WD repeat domain containing 83 [Source:NCBI gene;A...	[more]
snrnp40	3.702e-7	26.17	small nuclear ribonucleoprotein U5 subunit 40 [Sou...	[more]

BLAST of mRNA export factor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSPMAT00000007594.1	2.548e-59	48.39	pep scaffold:Pmarinus_7.0:GL477618:2658:11743:-1 g...	[more]
bub3	1.698e-19	27.96	BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:Z...	[more]
snrnp40	1.192e-8	27.10	small nuclear ribonucleoprotein 40 (U5) [Source:ZF...	[more]

BLAST of mRNA export factor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
GLE2	1.569e-32	37.37	RNA export factor associated with the nuclear pore...	[more]

BLAST of mRNA export factor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO47476	3.756e-53	46.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43356	5.729e-21	30.11	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO26155	7.219e-19	45.98	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33297	1.217e-7	21.79	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44093	4.446e-7	23.08	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of mRNA export factor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rae1	6.390e-58	47.31	ribonucleic acid export 1 [Source:NCBI gene;Acc:10...	[more]
rae1	1.765e-46	43.01	ribonucleic acid export 1 [Source:NCBI gene;Acc:10...	[more]
bub3	6.801e-21	30.65	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	6.801e-21	30.65	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
snrnp40	9.773e-9	28.80	small nuclear ribonucleoprotein U5 subunit 40 [Sou...	[more]

BLAST of mRNA export factor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000032008.1	1.931e-140	99.52	SMESG000032008.1	[more]
SMESG000032005.1	4.315e-39	57.14	SMESG000032005.1	[more]
SMESG000016111.1	6.360e-18	28.50	SMESG000016111.1	[more]
SMESG000008529.1	4.906e-7	24.32	SMESG000008529.1	[more]
SMESG000008519.1	5.916e-7	24.32	SMESG000008519.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30002898 ID=SMED30002898|Name=mRNA export factor|organism=Schmidtea mediterranea sexual|type=transcript|length=1233bp
GTACTTTGCTTAAAACTTTAAGTTAAAAGTGTAATTTTGAGTAAAATGTC
TTTTAACAATAGCTTCTTTAAAAATGGCCAGAATGCAAATCAAAATACAA
ACCAATCTAACGCACAAGAAATTGAAATTCCTCAAGCTCCTTCTGATACT
GTTTCATGCTTAAAGTTTAGCACTGATTTATCTCCTGCTACTTACTTAAT
GGCGGGCAGTTGGGATAAGACTGTAAAAATATGGGAAATAACACCGCAAG
GCCAACCAATCTTTCGTGCTCAGCAGAGTTTCCAAGCTCCGGTTTTAGAT
TGTTGTTGGAGTCATGATTCAACAAAAGCATTTATTTCTTGTACAGATAA
TTTCGGTTACATGTGGAATATCGCCACACAAACTGTTTCTCAAATTGCAG
TTCACGATGCACCAATTAAAATAATAAAGTTTATAAAAGCAACTAATTAT
TCTTGTGTTATGACTGGAAGTTGGGATAAAAAACTAAAATTTTGGGATAT
GGTGAATAATCAACCAATTAAAGTAATGGAACTTTCTGACAAAGTCTATT
GTGCTGATGTTCATTATCCCATGGCTGTAGTTGGTACAGCTGATAAAAAG
ATTTATGTTTACAATTTGCAAACTGAACCTGTTGAATTCAAACAATATCC
ATCGCAATTAAAATGTCAAGTAAGGTTTCTAGATGACTTTATTTTAAGTT
AAATATCATTATTAATTCAAATTAAATGTATTTTTAAATTCAAATATTTC
GTTATATATTAACCTTAAAAAGTTATTAAATTACAGTAAAAATGAGTTAT
TGAGTCAGAGAGATACTGTTACTAATATAAATAGTAAGGTGGGATAAAGT
TTCTTAGCTTAATGCAACTCCTACCATAATCAGGCTTACATCACTTTTTT
AAAAATTTCAGTATCATTTTAAAGAACAAGTTTTCCTATAATATTCCTAT
TAAAAGGTATGAGTAAAAAATGTGGTTCATTTGTTCGAATGGTAACTCGG
TAACCGAATTTTAGAATTCCTTGAAATTTACTGGAATGGACTAAAGGGCT
TTCTATCAATATCTAAATATTCCTGAGAGGATATTTAAAGTTCTTTCCAG
CAAACTAATCGATCTGATTGTGCATTTCCTGCTACGGCGCCTATTTGTAC
TTTTTTCTAACCCTTTTACTATCAATTCCTTTGAAATTCAATTTTTCATT
TTTTATCACGCTATAGTGCGGGGATTTGAGATT

protein sequence of SMED30002898-orf-1

>SMED30002898-orf-1 ID=SMED30002898-orf-1|Name=SMED30002898-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=219bp
MSFNNSFFKNGQNANQNTNQSNAQEIEIPQAPSDTVSCLKFSTDLSPATY
LMAGSWDKTVKIWEITPQGQPIFRAQQSFQAPVLDCCWSHDSTKAFISCT
DNFGYMWNIATQTVSQIAVHDAPIKIIKFIKATNYSCVMTGSWDKKLKFW
DMVNNQPIKVMELSDKVYCADVHYPMAVVGTADKKIYVYNLQTEPVEFKQ
YPSQLKCQVRFLDDFILS*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **biological process**
Term	Definition
GO:0006406	mRNA export from nucleus
GO:0071407	cellular response to organic cyclic compound

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR037631	Gle2/RAE1
IPR036322	WD40_repeat_dom_sf
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding
GO:0003723	RNA binding

Vocabulary: **cellular component**
Term	Definition
GO:0001650	fibrillar center
GO:0005634	nucleus
GO:0005635	nuclear envelope
GO:0005643	nuclear pore
GO:0005737	cytoplasm

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 154..190 e-value: 10.0 score: 10.6 coord: 110..151 e-value: 0.42 score: 19.4 coord: 22..64 e-value: 0.0017 score: 27.6 coord: 68..108 e-value: 1.5 score: 15.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 136..151 e-value: 0.15 score: 13.0 coord: 36..63 e-value: 0.0042 score: 17.9
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 29..65 score: 9.573
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 3..218 e-value: 1.2E-54 score: 188.1
IPR037631	mRNA export factor Gle2/RAE1	PANTHER	PTHR10971:SF11	MRNA EXPORT FACTOR	coord: 13..211
None	No IPR available	PANTHER	PTHR10971	MRNA EXPORT FACTOR AND BUB3	coord: 13..211
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 138..152
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 51..65
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 29..160 score: 12.763
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 27..193