Tgs-1

Overview
NameTgs-1
Smed IDSMED30002872
Length (bp)1519
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tgs-1 (SMED30002872) t-SNE clustered cells

Violin plots show distribution of expression levels for Tgs-1 (SMED30002872) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Tgs-1 (SMED30002872) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Tgs-1 (SMED30002872) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002872

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30002872h1SMcG0013721 SMED30000949smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30002872h1SMcG0013721 SMED30002872smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pigment cellSMED30002872h1SMcG0013721 SmedASXL_013279SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
X1 cellSMED30002872h1SMcG0013721 SmedASXL_013279SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30002872h1SMcG0013721 SmedASXL_013279SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30002872h1SMcG0013721 dd_10988dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult fluorescence in situ hybridization evidence
cephalic gangliaSMED30002872h1SMcG0013721 dd_Smed_v4_10988_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30002872h1SMcG0013721 dd_Smed_v4_10988_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tgs-1 vs. TrEMBL
Match: A0A2Z4ELZ5 (Tgs-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 285/308 (92.53%), Postives = 286/308 (92.86%), Query Frame = 3 
Query:  483 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSET-----------------PLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKR----KSLSPLKWNKKCIVPNLNEFKKRKLAAN 1343
            DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSE+                 PLGILSALKVSINTRT PTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKR    KSLSPLKWNKKCIVPNLNEFKKRKLAAN
Sbjct:  144 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSESIKLCKDMIVLVEHLFLAPLGILSALKVSINTRTAPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKRKIIVKSLSPLKWNKKCIVPNLNEFKKRKLAAN 451

HSP 2 Score: 295.049 bits (754), Expect = 0.000e+0
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 1 
Query:   13 MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 441
            MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNI LTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLG DEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE
Sbjct:    1 MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNIPLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGFDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 143
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000058876.1 (SMESG000058876.1)

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 3 
Query:  483 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKRKSLSPLKWNKKCIVPNLNEFKKRKLAAN 1343
            DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKRKSLSPLKWNKKCIVPNLNEFKKRKLAAN
Sbjct:  144 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKRKSLSPLKWNKKCIVPNLNEFKKRKLAAN 430

HSP 2 Score: 299.286 bits (765), Expect = 0.000e+0
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:   13 MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 441
            MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE
Sbjct:    1 MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 143
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000058876.1 (SMESG000058876.1)

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 287/291 (98.63%), Postives = 287/291 (98.63%), Query Frame = 3 
Query:  483 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKR----KSLSPLKWNKKCIVPNLNEFKKRKLAAN 1343
            DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKR    KSLSPLKWNKKCIVPNLNEFKKRKLAAN
Sbjct:  144 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKRKIIVKSLSPLKWNKKCIVPNLNEFKKRKLAAN 434

HSP 2 Score: 299.286 bits (765), Expect = 0.000e+0
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:   13 MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 441
            MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE
Sbjct:    1 MEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 143
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000058876.1 (SMESG000058876.1)

HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 287/291 (98.63%), Postives = 287/291 (98.63%), Query Frame = 3 
Query:  483 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKR----KSLSPLKWNKKCIVPNLNEFKKRKLAAN 1343
            DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKR    KSLSPLKWNKKCIVPNLNEFKKRKLAAN
Sbjct:  124 DLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQTLKRKIIVKSLSPLKWNKKCIVPNLNEFKKRKLAAN 414

HSP 2 Score: 254.988 bits (650), Expect = 0.000e+0
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:   73 MKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 441
            MKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE
Sbjct:    1 MKIHRQNLGVDKDNNILLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFE 123
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000023662.1 (SMESG000023662.1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.903e-24
Identity = 71/230 (30.87%), Postives = 119/230 (51.74%), Query Frame = 3 
Query:  486 LPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNK----PISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQESVIL 1163
            LP+NF+    + K + K+++D L     ++ K E ++   L +IG++++ I+ K+G+L P  IS +I  LK L     N I K +S I AVQILLL+I   +R L+ K++++F I++    +  + E+L ++L  S F+  N+   L +    K  IN     +N I D P +  K+       I    +P   I  K T P  KS +   I  +F +SK N +  + +L
Sbjct:  129 LPINFMNYSNMDK-EVKRVLDDLKGIKLSERKTEYLKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQL---SKDFINL----SNHIFDCPSELHKIVNIYMIAIVNSNQPCELI--KGTEPSNKSTNST-IDCYFSHSKINRETNADLL 347

HSP 2 Score: 55.0694 bits (131), Expect = 9.903e-24
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:  151 LLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHIL 429
            ++ +K  +P AF +++Q  LN L L LD+ FL +    ++ R     ++N  R   R   R RSMSPSG++   E  WE   EIA   I+++L
Sbjct:   34 VVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNK-RIPSRT--RQRSMSPSGSLNKAEKSWENNFEIANATIEYLL 123
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000062778.1 (SMESG000062778.1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.511e-19
Identity = 52/147 (35.37%), Postives = 87/147 (59.18%), Query Frame = 3 
Query:  486 LPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPL 926
            LP NFL D P  + +SK+++D L      K + E + ++ L++IG++L+ IL+K+G L P  IS ++  LK L     N   K +S I AVQILLL+I   NR L+  ++E+++ + K + ++++ E+L  +L  S F   N+   L
Sbjct:  168 LPSNFLND-PNLEKESKKILDDLKVFKTAKERKEYLEKNKLNVIGEALKNILSKIGGLVPLRISSEVELLKSLMNVRDNKACKRKSHIIAVQILLLNIPEMNRTLLKSIIELYKKLMKHKTVKINNEQLYDLLNISLFNGENNYNKL 313

HSP 2 Score: 37.3502 bits (85), Expect = 6.511e-19
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:  100 VDKDNNILLTNKELVIQ-------LLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPR-RMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFEGK 447
            V+K   I+L+N    IQ       LLE+K  +P+ F   +Q  LN LKL LD+ FL++ +   + R ++S +I +        S   + +S SG++   +  WE   E A ++I+ I+   E K
Sbjct:   30 VNKIFCIILSNIPFSIQSEIVMKSLLESKVFYPLEFKDASQELLNRLKLQLDKSFLIESNGVARSRLKISKVISSR-----IRSRSRQRVSSSGSLNRTDKSWENNVEFANVIIEVIMNNLESK 148
The following BLAST results are available for this feature:
BLAST of Tgs-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z4ELZ50.000e+092.53Tgs-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1[more]
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BLAST of Tgs-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tgs-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000058876.10.000e+0100.00SMESG000058876.1[more]
SMESG000058876.10.000e+098.63SMESG000058876.1[more]
SMESG000058876.10.000e+098.63SMESG000058876.1[more]
SMESG000023662.19.903e-2430.87SMESG000023662.1[more]
SMESG000062778.16.511e-1935.37SMESG000062778.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002872 ID=SMED30002872|Name=Tgs-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1519bp
CAAATCAATAATATGGAACAAATATATTTCAATGATTTTCTTTCGAGTTG
CGGTGCATCTTCAACGCCAATAATGAAAATTCATAGACAAAATCTGGGTG
TTGATAAAGATAATAATATTCTATTGACAAATAAAGAACTTGTGATTCAA
TTATTGGAAGCAAAGGAAGAATGGCCTATGGCATTTAGTAGAGTGACGCA
AAACCGACTTAATGAATTGAAATTGGGTTTGGATGAAGATTTTTTACTGA
AACAACACGAACAACGCAAGCCAAGACGTATGTCACCAATGATAATAAAT
CACAATAGAAATTGCGGTAGAAATAGTAATAGAGATCGCAGCATGTCGCC
ATCAGGAGCCATAAAAATGAAAGAAAGTAAGTGGGAAAGAAGATCAGAAA
TTGCTATGTTATTAATTGATCACATATTGATGAAATTTGAAGGTAAAAAT
TAAAAATATTAATTAATTATTACATAATTATAGATTTACCTTTGAACTTT
CTCAAAGACCAACCTATTTGGAAAACGCAATCAAAGCAACTGATAGACAC
TCTTGGAAAGTCAATTGAAAATAAAACGAAAATAGAGAAAATACGCGAAT
CAAACCTGCATATAATTGGTCAAAGTTTGCGAATAATATTGAATAAAATG
GGGATGCTGTTTCCAAAAGTTATTTCCGAACAAATTTTACAATTGAAATT
CTTGAGAACTCGCTCAGGAAATGCCATTGTTAAAGACCGATCAAAAATTG
AAGCAGTGCAAATATTATTGTTGCACATTTCAACGCCGAATAGAATATTG
ATTAATAAACTGTTAGAAATGTTCCGAATTATAAGTAAAATCAGAAAGAT
CCAAATGAGTGGAGAGGAACTCGGTAAAATTCTCTGTCAATCATTTTTTG
AAGAACTTAATTCCGAAACCCCTTTAGGCATATTATCCGCATTAAAAGTC
TCCATCAATACTCGCACTACACCAACAAATTTAATTATCGATTTCCCGGA
GAAAAAACTCAAATTAAACAAACCAATTTCCACTCCAACAAAACCAAACA
TTAAAATCTTCCACAAACCAACGACCCCAATCACCAAATCCATTTCTGGT
GTTCCGATTGTGTCATTTTTCCCGAATTCTAAATGGAACTCCCAACAGGA
ATCCGTCATTCTCACTGCATTCAACAAAATCAATTCCCCTGAACAAATCA
AAAAGCCGTCAGTCCCAATGATTTTCACGCCAACACTGAAAAATCAAACG
TTGAAAAGAAAATCTTTATCACCTTTGAAATGGAACAAAAAATGCATCGT
TCCTAATTTGAATGAATTCAAGAAGCGAAAGCTAGCAGCGAATTGATTGG
AAGACAAGTGTAAATATTTGTGTATATAGCCAATTGCTATTTGTCAATTA
TTTGTGAAACGACGAGATGCACACATTTATTTTATTAGTATCAGATAATG
CACTATCGATTTGATTCACAACAGATATATTGATTGATTTCACATCCAGA
TGTATAGATAGAAATAGGC
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protein sequence of SMED30002872-orf-1

>SMED30002872-orf-1 ID=SMED30002872-orf-1|Name=SMED30002872-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=233bp
MGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRI
LINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALK
VSINTRTTPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSIS
GVPIVSFFPNSKWNSQQESVILTAFNKINSPEQIKKPSVPMIFTPTLKNQ
TLKRKSLSPLKWNKKCIVPNLNEFKKRKLAAN*
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protein sequence of SMED30002872-orf-2

>SMED30002872-orf-2 ID=SMED30002872-orf-2|Name=SMED30002872-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=151bp
QINNMEQIYFNDFLSSCGASSTPIMKIHRQNLGVDKDNNILLTNKELVIQ
LLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIIN
HNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFEGKN
*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002075pigment cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell