Degenerin unc-8
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002847 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Degenerin unc-8 vs. TrEMBL
Match: S5W2R2 (Asic OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 494.197 bits (1271), Expect = 7.824e-168 Identity = 256/496 (51.61%), Postives = 355/496 (71.57%), Query Frame = 1 Query: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIK-NYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMY 1485 MI+++QSSTIHG+ HI A ++I KVLW LF+ G+I I VNIVF+ +K+ SNPV+IS+ +HEPFIWPD+TFC PT PY F NSQ Y HW +T+R+ ++A +T + ++I+ +R DYELEERTIAMSSADP KL+ F+ ++ I + K +G+Y+ + + T ED K LFT+ +VQ+RNNIPC TFH+DKS+ + Q IKS+ F K N ESY +FNSSY +S+FLYI+N++ IP NEI+L PG+NN+V L+Q+R+ Y G++R CRN+ FE ELYD LLQST + G YDDCKK+ SQ+ +V C CY+ FLPI+KN +G PR+CLNA+ +SE E+++NAKCM + + K+ R + +C+ YR I CN+V YKI+ KE+ V+ WS TN RR E++K + + + ++ E+++DN + + INR+ + GDLYKEE EYPFSELLSD+GGLMGLWLG+SV+GLFEI E +Y Sbjct: 1 MIDLIQSSTIHGIGHIFSATNKIFKVLWCILFLVGVIAIIVNIVFISMKFLSNPVIISYTFEHEPFIWPDITFCNPTDPYAFTINSQPYLHWIETLNKTKRVAGKVARQTSMSQLIHSRRENDYELEERTIAMSSADPAKLQATAFQNYLYRIGYIKAHKGLYFSKEFQS-SSTKLNEDWKSLFTSQIVQMRNNIPCHTFHLDKSRIVKQKFIKSLLFRFKLNEESYKIFNSSYTFQSMFLYISNKDEIPQSNEIILTPGYNNVVQLTQNRHSYTGLRRTCRNEKFEAELYDSLLQSTEKYSGSYDDCKKIVSQQKYVKYCNCYNSFLPIFKNSSGFPRLCLNASIFSEAEVLKNAKCMINTFRKYAESDKARRRFYNRCKMYRPIPCNKVLYKIDHRKEILVDLWSKSTNDRRREIIKTLYLKTFQTNETSLDFVEKVKDNIMQLIINRDNESGDLYKEEREYPFSELLSDVGGLMGLWLGLSVIGLFEIVEFVY 495
BLAST of Degenerin unc-8 vs. TrEMBL
Match: A0A183A5V1 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS2336 PE=3 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 9.024e-77 Identity = 170/520 (32.69%), Postives = 278/520 (53.46%), Query Frame = 1 Query: 10 ILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKP---LFTAPLVQIRNNIPCFTFHI----DKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNET-----GPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLK-CQDYRFIK-CNEVKYKIEK-DKELFVEFWSGLTNQRRNELL--------------KKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELM 1482 +L+ ST+HG+SH+ A S+I + +W+ L++ G+ G F N+ F++ +Y + PVL S+K DHE FIWPD+T C P APY ++ W+ + R R+ + ++ + +F I+ E+ + + S+ P + + + I + +K + GI+ ++ ++F + P F A ++Q R+NIPC+T + + L+ NQ+ S LKFN +S+L+ NSSY R++ L+I+ P + L G+ + VS+S +R+ + CR F +++D L++ G D C K+ SQ+L++ C CYSPFLP + G P +C N + ++ I +NAKCM DVYT++ + + N + C+ +R C Y E + +E WS N+ R L +++ L + N F MR+NF +TI+R+F +G L EE EYP SELLSD+GGLMGLW+G+SV+GLFE+ EL+ Sbjct: 33 LLEHSTVHGLSHVSTASSRIGRSIWLILWLAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHESFIWPDITLCNPMAPYPVHLRNRT-EKWNELRLRATRVAKNISED--LFAAIDDAEQ--LEIAIQALLYSTISPEQFGVGEPQELIQFVAADKGRSGIHLTVE----MYSTFTDLDAPKTQYFHAQMLQKRHNIPCYTLQLAHVLSQEDCLSTNQV---SLGLKFNHDSFLIINSSYAPRNIDLFISLPGHFPEDESMELLSGYTHKVSVSMTRFIREPNRLPCRTDEFVAQMFDANLKTRREIVGSADFCHKLVSQRLYINNCGCYSPFLPYPVVDEHLLVHGQPVLCFNMSHFNITSIDQNAKCMYDVYTQYHDHSVYMNLPEAQYCETFRSTPPCESTSYMPESLRRTPIIELWSDTINEGRTAFLTSTFESVFGPDLPEERIRQLLNNSGNNSNMFTYMRNNFGMVTISRKFPRGTLTHEELEYPLSELLSDLGGLMGLWIGISVIGLFEVVELL 540
BLAST of Degenerin unc-8 vs. TrEMBL
Match: A0A4E0RSD9 (Degenerin unc-8 OS=Fasciola hepatica OX=6192 GN=D915_000009 PE=3 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 8.797e-73 Identity = 169/521 (32.44%), Postives = 277/521 (53.17%), Query Frame = 1 Query: 10 ILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIING---KRNTDYELEERTIAM---SSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQ---IKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLP-IYKNETGP----PRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLK-CQDYRFI-KCNEVKYKIEKDKEL-FVEFWSGLTNQRRNELL--------------KKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFEL 1479 +L+ ST+HG+SH+ A ++I + +W+ L++ G+ G F N+ F++ +Y + PVL S+K DHE FIWPD+T C P APY N+++ W+ ++ +LA T V + I+G + E EE T+ S+ P + ND + + +K Q GI+ I+ T+ F ++Q R NIPC+T +D+ LN+ + K +S LKFN +S L+ NSSY ++ L+I+ +P + + G+++ V+++ R+ + CR + F T+++D L++ G D C K+ SQ+L++ C CYSPFLP + P P +C N + ++ I RNA+CM DVYT+F+ + N C+ +R C + Y +E + +EFW+ N+ R+ + +++ + + + MR+NF + I R+ +G L EE EYP SELLSD+GGLMGLW+G+SV+GLFE+ EL Sbjct: 34 LLEHSTVHGLSHVSTAGTRIGRSVWLILWMAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHELFIWPDITLCNPMAPYPVHLNNRS-EKWN--------LLHQLA--TAVSRNISGNLFATIDEAEQEEVTVQALIHSTVSPMEFGANDPHELVHFVAVDKGQTGIHLTIEMDA-TFTNLDIPKHRYFHVQVLQKRYNIPCYTLRLDQ--VLNEEECASTKQVSLGLKFNHDSNLIINSSYAPFNIDLFISLPGHMPEDEPMEILSGYSHKVTVTMGRFTRERTRLPCRTEQFVTQVFDADLKTQREVVGSADFCLKLLSQRLYIDHCGCYSPFLPYPVMGQDHPLYQQPVLCFNMSHFNASGIDRNARCMYDVYTQFKEDFVYMNLPEAGYCETFRATPPCESINYVLESPRRTPIIEFWADTVNEARSAFVTSTFESVFGQDLPEERLKQMVNNSGNTSSLLFYMRNNFGLVKITRKLPRGTLTHEELEYPLSELLSDVGGLMGLWVGISVIGLFEVVEL 540
BLAST of Degenerin unc-8 vs. TrEMBL
Match: A0A504YRR8 (Degenerin unc-8 OS=Fasciola gigantica OX=46835 GN=FGIG_05554 PE=3 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 5.982e-72 Identity = 168/521 (32.25%), Postives = 277/521 (53.17%), Query Frame = 1 Query: 10 ILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIING---KRNTDYELEERTIAM---SSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQ---IKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLP-IYKNETGP----PRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLK-CQDYRFI-KCNEVKYKIEKDKEL-FVEFWSGLTNQRRNELL--------------KKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFEL 1479 +L+ ST+HG+SH+ A ++I + +W+ L++ G+ G F N+ F++ +Y + PVL S+K DHE FIWPD+T C P APY N+++ W+ ++ +LA T V + I+G + E EE T+ S+ P + ND + + +K Q GI+ I+ T+ F ++Q R NIPC+T +D+ LN+ + K +S LKFN +S L+ NSSY ++ L+I+ +P + + G+++ V+++ R+ + CR + F T+++D L++ G D C K+ SQ+L++ C CYSPFLP + P P +C N + ++ I RNA+CM +VYT+F+ + N C+ +R C + Y +E + +EFW+ N+ R+ + +++ + + + MR+NF + I R+ +G L EE EYP SELLSD+GGLMGLW+G+SV+GLFE+ EL Sbjct: 34 LLEHSTVHGLSHVSTASTRIGRSVWLILWMAGVAGFFTNLSFIVSRYMTRPVLTSYKHDHELFIWPDITLCNPMAPYPVHLNNRS-EKWN--------LLHQLA--TAVSRNISGNLFATIDEAEQEEVTVQALIHSTVSPMEFGANDPHELVHFVAVDKGQTGIHLTIEMDA-TFTNLDIPKHRYFHVQVLQKRYNIPCYTLRLDQ--VLNEEECASTKQVSLGLKFNHDSNLIINSSYAPFNIDLFISLPGHMPEDEPMEILSGYSHKVTVTMGRFTRERTRLPCRTEQFVTQVFDADLKTQREVVGSADFCLKLLSQRLYIDHCGCYSPFLPYPVMGQDHPLYQHPVLCFNMSHFNASGIDRNARCMYEVYTQFKEDFIYMNLPEAGFCETFRATPPCESINYVLESPRRTPIIEFWADTVNEARSAFVTSTFESVFGQDLPEERLKQMVNNSGNTSSLLFYMRNNFGLVKITRKLPRGTLTHEELEYPLSELLSDVGGLMGLWVGISVIGLFEVVEL 540
BLAST of Degenerin unc-8 vs. TrEMBL
Match: A0A5J4NUF1 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0013022 PE=3 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 2.045e-71 Identity = 164/521 (31.48%), Postives = 270/521 (51.82%), Query Frame = 1 Query: 10 ILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKS-KFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLP---IYKNE--TGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLK-CQDYRFIKCNEVKYKIEK-DKELFVEFWSGLTNQRRNELLKK---------------VSYYLMEKFD--------IKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFEL 1479 +L+ ST+HG+SH+ A +++ ++ W L + GI G F N+ F+I +Y + PVL S+ ++E FIWPD+T C APY + + W + + ++L + +F I+ + E+ + + S+ P + + I + + +GI ++ SG +T LK F ++Q R N+PC+T + S + NQ+ SI +KFN+ESY + NSSY + L+I++ PH + I + PG+ +SL SR + CR + TE++D L + G C ++ SQ L++ C CYSPFLP +Y ++ + +C N + +S +I RNA CM +Y ++Q + + + C+ +R C++V+YK+ + VE WS N+ R L VS+ + D + + MRDNF +++NR+ + G+L +EE EYP SEL+SD+GGLMGLW+G+SV+GLFEI EL Sbjct: 30 LLEHSTVHGLSHVSTAATKLGRITWFCLLLAGIAGFFTNLSFIIDRYLTRPVLTSYISEYEGFIWPDITLCNAMAPYSLHLHGR-IPKWQALRNQASAFAQKL--NSSLFASIDSQDQN--EIAIQALMYSTLSPPEYGVGEPEEFIQFVATDVGYQGIILTVEISG-NMTHLNPPLKKYFHTQVLQKRYNVPCYTLQLRHSLTAVQSNQVNSIGLGVKFNVESYRIINSSYASPYIDLFISHPGHAPHDDPIEMLPGYTLSLSLRMSRLRREPARLSCRTDFYTTEVFDPDLVTKRRVNGSATFCHRIVSQHLYLNSCHCYSPFLPYPVVYNHKLFSKMAILCFNMSRFSVAQINRNADCMLRIYERYQLSSVYNSVPEARACEQFRKPLCDDVEYKLSDIRRTAMVELWSNSYNEARIAFLTSSFQNLFSSDIPPEQLVSWLDSDTKDDNTKDNDSMPKILKYMRDNFGLLSVNRKSELGELVREELEYPLSELMSDVGGLMGLWIGISVIGLFEIVEL 544
BLAST of Degenerin unc-8 vs. Ensembl Nematostella
Match: EDO42137 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2F2]) HSP 1 Score: 50.447 bits (119), Expect = 1.254e-6 Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1 Query: 1366 LYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSK 1521 L +E Y F LLSDIGG MG+W+G+S + E+ EL+ + L N+ ++ K Sbjct: 447 LVQETLAYTFMSLLSDIGGQMGMWIGISALTCAELIELVCVILANMSNRSKK 498
BLAST of Degenerin unc-8 vs. Ensembl Nematostella
Match: EDO39446 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SA83]) HSP 1 Score: 48.1358 bits (113), Expect = 6.675e-6 Identity = 29/115 (25.22%), Postives = 56/115 (48.70%), Query Frame = 1 Query: 1156 IKCNEVKYKIEKDKELFVE--FWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYL 1494 ++C+ V++ ++ + FW ++N+R + D K + E R I + + + ++ KE+ Y S+L D GG MGL+LG S++ + E +L+ +YL Sbjct: 341 VRCSRVEFDVQLSSLYYPPDNFWETISNERSLTIYAN---------DTKKFQEWYRRRVIQLNVFYKELTTEVRKEKEAYTISDLAGDFGGNMGLFLGCSILTIAEFIDLLVVYL 446
BLAST of Degenerin unc-8 vs. Ensembl Medaka
Match: asic1a (acid-sensing ion channel 1 [Source:NCBI gene;Acc:101159102]) HSP 1 Score: 48.9062 bits (115), Expect = 9.471e-6 Identity = 29/97 (29.90%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 1255 KKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLK-NLCYQTSKQQSNMEK 1542 K + YL +K++ + ++DN + + I E + +++ Y + LL DIGG MGL++G S++ + EIF+ +Y +K LC + K+ +N ++ Sbjct: 382 KASAKYLAKKYNKSEQY--IKDNILVLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTILEIFDYLYEVIKYKLCRCSDKKHNNTDQ 476
BLAST of Degenerin unc-8 vs. Planmine SMEST
Match: SMESG000017678.1 (SMESG000017678.1) HSP 1 Score: 1032.71 bits (2669), Expect = 0.000e+0 Identity = 520/521 (99.81%), Postives = 520/521 (99.81%), Query Frame = 1 Query: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNMEKFEQNAAS 1563 MIEILQSSTIHGVSHIHGAKSQITKVLWIFLFIFGIIGIFVNIVFVIIKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGV RKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNMEKFEQNAAS Sbjct: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWIFLFIFGIIGIFVNIVFVIIKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVLRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNMEKFEQNAAS 521
BLAST of Degenerin unc-8 vs. Planmine SMEST
Match: SMESG000016391.1 (SMESG000016391.1) HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0 Identity = 379/484 (78.31%), Postives = 423/484 (87.40%), Query Frame = 1 Query: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSV 1452 MIE+++SSTIHGVSHIH AKSQI K+LWIFLFIFGIIGIF+NI F++IKYFSNPVL SH L+HEPFIWPD+TFCKPTAP+YFGENSQAY HW+ V +T+RIVERLANET+VFKII GK NTDYELEERTIAMSSADPYKLK +DF+ H++ I FNK+Q GIYY++D S AVTS EDLKPLFT LVQI NNIPCFTFHID+SKF+NQN IKS++F LKFNLESY LFNSSYLHRSVFLYI+NRN P +NEILLAPGFNNI+SLSQSRYE +GVQRKCRN+ + ELYD LL+STSTFEGHYDDCK+VESQ+LFV C CYSPFLPIYKN+TG PRICLN TFYSE+EI++NAKCM DV+ +FQSYKAF N C+ YRFIKC EVKY IEK+KELFVEFWSGLTNQRR L+KK S +L EKFD K YFERMRDNFIGI I RE QKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSV Sbjct: 1 MIELIESSTIHGVSHIHSAKSQIIKLLWIFLFIFGIIGIFINIAFILIKYFSNPVLFSHILNHEPFIWPDMTFCKPTAPFYFGENSQAYNHWAEVVSKTKRIVERLANETKVFKIIIGKNNTDYELEERTIAMSSADPYKLKVDDFQSHVIGINFNKIQEGIYYNVDYSVKAVTSIDEDLKPLFTTQLVQIGNNIPCFTFHIDRSKFINQNSIKSVNFNLKFNLESYFLFNSSYLHRSVFLYISNRNSFPRRNEILLAPGFNNIISLSQSRYELKGVQRKCRNEKYVVELYDALLKSTSTFEGHYDDCKRVESQRLFVRNCNCYSPFLPIYKNKTGQPRICLNGTFYSEEEILQNAKCMVDVFRRFQSYKAFMNILHSNCEHYRFIKCKEVKYGIEKEKELFVEFWSGLTNQRRQRLIKKYSRHLTEKFDNKKYFERMRDNFIGIAIKRETQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSV 484
BLAST of Degenerin unc-8 vs. Planmine SMEST
Match: SMESG000069546.1 (SMESG000069546.1) HSP 1 Score: 734.947 bits (1896), Expect = 0.000e+0 Identity = 380/521 (72.94%), Postives = 438/521 (84.07%), Query Frame = 1 Query: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNMEKFEQNAAS 1563 MIEILQSSTIHGVSHIHGAKS+ITK+LWI LFI G+IGIFVNIVFVI++YFSNPVLIS LDHEPFIWPD+TFCKPTAPYYF ENSQ Y HW+ VF RTRRIVERL+NETE FKI+NGKRNTDYELEERTIAMSSADPYKLK ++F YHIM I FN+++ Y DN +F EDLKPLFTAPLVQI+NNIPCFTFHI+KSK L+Q+ I SI F+L FN++SY+LFNSS+LHRSVFLYITNRNGIP K E+LL PGFNNIVSLSQ+R+EYRGVQRKCRNK ++ ELYD LLQSTS FEG+Y DC KVESQKL V CKCY+PFLPIYKNETG PRICLNATFYSE+EI++NAKCM + KF+S+ +R + KCQDY+ IKCNEVKYKIEK+K LF E SG T QRR +++K S + ++ D ++ FER+RDN+I ITI REF KGDLYKEEYEYPFS+LLSDIGGLMGLWLGMSVVGLFEIFE++Y+Y NL +K+QSN+ EQNAAS Sbjct: 1 MIEILQSSTIHGVSHIHGAKSRITKMLWIILFILGLIGIFVNIVFVIMRYFSNPVLISRNLDHEPFIWPDITFCKPTAPYYFVENSQPYNHWTEVFRRTRRIVERLSNETEFFKIMNGKRNTDYELEERTIAMSSADPYKLKMDNFSYHIMLIVFNRIRTYTNYISDNEFFE--NFHEDLKPLFTAPLVQIQNNIPCFTFHINKSKSLHQDNITSIRFHLNFNIKSYMLFNSSFLHRSVFLYITNRNGIPQKYEMLLEPGFNNIVSLSQNRFEYRGVQRKCRNKTYKVELYDALLQSTSIFEGYYADCMKVESQKLCVSNCKCYNPFLPIYKNETGSPRICLNATFYSEEEILKNAKCMVNRLRKFKSFFLYRRFFNPKCQDYQLIKCNEVKYKIEKEKLLFAELSSGFTTQRRRKVIKGFSKWF-QRIDNRSDFERIRDNYIVITIKREFPKGDLYKEEYEYPFSQLLSDIGGLMGLWLGMSVVGLFEIFEIIYMYFTNL----NKKQSNIRICEQNAAS 514
BLAST of Degenerin unc-8 vs. Planmine SMEST
Match: SMESG000017668.1 (SMESG000017668.1) HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0 Identity = 375/522 (71.84%), Postives = 433/522 (82.95%), Query Frame = 1 Query: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNI-PCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNLCYQTSKQQSNMEKFEQNAAS 1563 MIEILQSSTIHGVSHI GAKS+ITK+LWI +FI GII IFVNIVFVI+KYFSNPVLISHKLDHEPFIWPD+TFCKPTAPYYF ENSQ Y HW+ VF RTRRI+ERL NETE F II + NTDYELEERTIAMSSADPYKLK N++RYHI I F ++ R + Y+ + + F EDL LFT+PLVQI NN+ PCFTFH+DKSK LNQN IKS F+L N++SYLLFNSS HRSVFLYITNRNGIP E+LL PGFNNI+SLSQ+RYEYRGV RKCR K +E ELYD LLQSTSTFEG YDDC+KVE+QKLFV C CYSPFLPIYKN+TGPPRICLNATFYSE+++++NA CM + + K +S +AFRN YRLKCQDY+ I+CN+VKYK EK+K LF E WSG T +RR+++LK+ S + ++ D ++ FER+RDN+I ITINREF KGDLYKEEYEYPFS+LLSDIGGLMGLWLGMSVVGLFEIFE++YLYL L SK Q+NMEK EQN AS Sbjct: 1 MIEILQSSTIHGVSHIQGAKSRITKMLWIIIFILGIILIFVNIVFVIMKYFSNPVLISHKLDHEPFIWPDITFCKPTAPYYFVENSQIYNHWTEVFRRTRRILERLTNETEAFSIITKQINTDYELEERTIAMSSADPYKLKVNNYRYHIKGITFLRIPRYVNYYANTE--VMEFFEEDLMSLFTSPLVQIHNNMFPCFTFHVDKSKSLNQNYIKSFFFHLNLNIKSYLLFNSSAFHRSVFLYITNRNGIPQTYEMLLEPGFNNIISLSQTRYEYRGVHRKCRKKTYEVELYDALLQSTSTFEGDYDDCRKVETQKLFVSKCNCYSPFLPIYKNKTGPPRICLNATFYSEEDVLKNANCMVNNFRKIESVEAFRNLYRLKCQDYKLIECNKVKYKFEKEKLLFTELWSGFTTKRRHKMLKQFSNWF-QRIDNRSDFERIRDNYIVITINREFPKGDLYKEEYEYPFSQLLSDIGGLMGLWLGMSVVGLFEIFEIIYLYLIKL----SKHQTNMEKCEQNDAS 515
BLAST of Degenerin unc-8 vs. Planmine SMEST
Match: SMESG000017657.1 (SMESG000017657.1) HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0 Identity = 281/501 (56.09%), Postives = 366/501 (73.05%), Query Frame = 1 Query: 1 MIEILQSSTIHGVSHIHGAKSQITKVLWXXXXXXXXXXXXXXXXXXXXKYFSNPVLISHKLDHEPFIWPDVTFCKPTAPYYFGENSQAYTHWSHVFWRTRRIVERLANETEVFKIINGKRNTDYELEERTIAMSSADPYKLKTNDFRYHIMAIYFNKMQRGIYYHIDNSGIAVTSFAEDLKPLFTAPLVQIRNNIPCFTFHIDKSKFLNQNQIKSISFYLKFNLESYLLFNSSYLHRSVFLYITNRNGIPHKNEILLAPGFNNIVSLSQSRYEYRGVQRKCRNKIFETELYDGLLQSTSTFEGHYDDCKKVESQKLFVGICKCYSPFLPIYKNETGPPRICLNATFYSEDEIVRNAKCMTDVYTKFQSYKAFRNHYRLKCQDYRFIKCNEVKYKIEKDKELFVEFWSGLTNQRRNELLKKVSYYLMEKFDIKNYFERMRDNFIGITINREFQKGDLYKEEYEYPFSELLSDIGGLMGLWLGMSVVGLFEIFELMYLYLKNL 1503 M E+L+SSTIH VSHI+GAKS+ TKVLW F+FIFGIIGI VNIV+VI YFS+P+L+SH L+ E FIWPD+T CKP AP+YF ++S Y +W ++ +T ++V RLANETEV K+I + D E EERT+ MS+ADP KLKT+D R H+ +IY+N+ +G +SG + DLK FT VQI NNIPCFTF I+K+K + +N + + FYLKFN +SYLLFNSSY SVFL++ N N IP + L P +N+I+SLSQSRY Y+ ++ KCR +I+ ELYD LQS S FEG++ DCKKV+SQ++FV CKCYSPFLPIYKN TGPPRICLNAT YSEDEI++NA CM D Y +F N C+ YR KC+E++YK+ K+KELF EF++G +N+RR +++K + ++ + + +RDNF+ + I+RE +KGDL+KEE+EY ELLSDIGGLMGLWLGMS+VGLFEIFE+ YLYL NL Sbjct: 2 MDELLESSTIHVVSHIYGAKSRYTKVLWSFVFIFGIIGISVNIVYVINNYFSSPILLSHTLNSEEFIWPDITLCKPVAPFYFEKDSDTYKYWMEIYRKTSKVVRRLANETEVLKLIGMIGDGDSEFEERTVMMSTADPLKLKTDDIRNHLFSIYYNENHKG------DSGFGDVT---DLKSAFTTQYVQIFNNIPCFTFQINKTKIIQKNLV-FLLFYLKFNFDSYLLFNSSYSPPSVFLFLNNANEIPQSKAMTLIPSYNHIISLSQSRYIYKNIKEKCREEIYYVELYDVTLQSYSKFEGNFVDCKKVKSQEMFVSQCKCYSPFLPIYKNATGPPRICLNATLYSEDEIIQNAYCMVDAYKRF-------NENNSSCEIYRLAKCDEIRYKMGKEKELFTEFFNGNSNERRRKMIKIIFSQFTQQPVSEIPYNIIRDNFMQLKISRETEKGDLFKEEFEYRMFELLSDIGGLMGLWLGMSIVGLFEIFEITYLYLINL 485 The following BLAST results are available for this feature:
BLAST of Degenerin unc-8 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Degenerin unc-8 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Degenerin unc-8 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Degenerin unc-8 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Degenerin unc-8 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Degenerin unc-8 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002847 ID=SMED30002847|Name=Degenerin unc-8|organism=Schmidtea mediterranea sexual|type=transcript|length=1604bpback to top protein sequence of SMED30002847-orf-1 >SMED30002847-orf-1 ID=SMED30002847-orf-1|Name=SMED30002847-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=524bp MIEILQSSTIHGVSHIHGAKSQITKVLWIFLFIFGIIGIFVNIVFVIIKYback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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