28S ribosomal protein S10 mitochondrial

Overview
Name28S ribosomal protein S10 mitochondrial
Smed IDSMED30002831
Length (bp)597
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 28S ribosomal protein S10 mitochondrial (SMED30002831) t-SNE clustered cells

Violin plots show distribution of expression levels for 28S ribosomal protein S10 mitochondrial (SMED30002831) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 28S ribosomal protein S10 mitochondrial (SMED30002831) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 28S ribosomal protein S10 mitochondrial (SMED30002831) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002831

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30002831SMESG000041503.1 SmedASXL_006514SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
protonephridiaSMED30002831SMESG000041503.1 dd_Smed_v4_2220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30002831SMESG000041503.1 dd_Smed_v4_2220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Human
Match: MRPS10 (mitochondrial ribosomal protein S10 [Source:HGNC Symbol;Acc:HGNC:14502])

HSP 1 Score: 93.2041 bits (230), Expect = 3.132e-23
Identity = 54/120 (45.00%), Postives = 70/120 (58.33%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ + VKGHD  VL+SY  F       L + +   V   P  I+RF L     I+KK   +YE+RT      L  LTG TA V LEYIQRNLPEGV M V K ++E +P+HI
Sbjct:   67 DEPDILYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTQLEQLPEHI 184
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Celegans
Match: mrps-10 (Probable 28S ribosomal protein S10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XWV5])

HSP 1 Score: 90.8929 bits (224), Expect = 2.815e-23
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 3 
Query:  162 PDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNS--CPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILK 518
            PD L+S + I+ +GHD  VL+SY  F+   C HL++     +   PYI R+V  +    F+HKK    YE RTH     +  +TG TAS  LEYIQRN+PEGVGM V    ++ +P  I K
Sbjct:   37 PDKLYSSVEIEYRGHDKAVLKSYTSFLQQVCQHLEIP-QGRLEVLPYI-RWVQPALRSKFVHKKYKLHYETRTHISKLEILNVTGSTASTFLEYIQRNIPEGVGMRVGFTELQPLPLTIQK 155
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Fly
Match: mRpS10 (gene:FBgn0038307 transcript:FBtr0083053)

HSP 1 Score: 89.7373 bits (221), Expect = 1.186e-22
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 3 
Query:   63 IMSIINTIRYSLFRNIGRRMSNIVYRDGDQIN--------EPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRS-KPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            ++  I T+R++      R +S +    G Q N        EPD L+SK+ I+++G D  VL+SY  F +T   HL +E        K + +R  L     I+KK   +YE+RTH       +LTG T    LEYI+RNLPEGV +   +  ++ IP+H+
Sbjct:    1 MLQAIKTLRWT---QPMRALSTVNTSSGVQGNLSPAAPAPEPDKLYSKLEIELRGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSVHIYKKHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGVALQASRTELQEIPEHL 156
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Fly
Match: mRpS10 (gene:FBgn0038307 transcript:FBtr0083054)

HSP 1 Score: 88.5817 bits (218), Expect = 5.093e-22
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 3 
Query:   75 INTIRYSLFRNIGRRMSNIVYRDGDQIN--------EPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRS-KPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            I T+R++      R +S +    G Q N        EPD L+SK+ I+++G D  VL+SY  F +T   HL +E        K + +R  L     I+KK   +YE+RTH       +LTG T    LEYI+RNLPEGV +   +  ++ IP+H+
Sbjct:   15 IKTLRWT---QPMRALSTVNTSSGVQGNLSPAAPAPEPDKLYSKLEIELRGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSVHIYKKHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGVALQASRTELQEIPEHL 166
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Zebrafish
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:565937])

HSP 1 Score: 99.3673 bits (246), Expect = 6.066e-26
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILK 518
             EPD L+ ++ ++VKGHD  VL+SY  F +     L + L        +ID+  L     I KK   +YE+RTH     + ++TG +A V LEYIQRNLPEGV M V K  +E IP+HI K
Sbjct:   55 EEPDTLYQRLSVQVKGHDRAVLDSYEFFATLAAKELGLSLEKVFEPPKHIDKLTLLKSRHIFKKHRVQYEMRTHYRCIQISRITGSSARVYLEYIQRNLPEGVAMEVTKTAMEKIPEHIQK 175
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Zebrafish
Match: mrpl48 (mitochondrial ribosomal protein L48 [Source:ZFIN;Acc:ZDB-GENE-041008-125])

HSP 1 Score: 45.8246 bits (107), Expect = 6.482e-6
Identity = 31/125 (24.80%), Postives = 60/125 (48.00%), Query Frame = 3 
Query:  174 FSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVEL-TSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILKIANSPSLEN 545
            F  I + V G+D  ++E Y +++   C  LD+++  S        +  V+        K F +  ++THE    + +L      +++E I +N PEGV + +++H  E   D++ +  + P LE 
Sbjct:   81 FGVINVCVSGYDMTLVEHYSQYIHNLCKRLDIKVDESYALPTKSTEVMVMQEQGM---KMFVDAVLKTHERVVQISELKATLFPILMEVILKNQPEGVQLCLKEHTKE---DYLARFKSRPELEQ 199
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Xenopus
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:549745])

HSP 1 Score: 97.8265 bits (242), Expect = 5.409e-25
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ KI +  K HD  VL+SY  F       L + +      K  I+RF L     I KK   +YE+RTH   + L  LTG TA V LEYIQRNLPEGV + + K  +E +PDH+
Sbjct:   68 DEPDTLYKKIEVLAKCHDKTVLDSYEYFAVLAAKELGINVEKVHEPKKKIERFTLLKSVHIFKKHRVQYEMRTHYRCFELRHLTGSTADVYLEYIQRNLPEGVALEITKTALERLPDHV 186
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Mouse
Match: Mrps10 (mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139])

HSP 1 Score: 91.2781 bits (225), Expect = 4.478e-23
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ I VK HD  VL+SY  F       L + +   V   P  I+RF L     I KK   +YE+RT      L  LTG TASV LEYIQRNLPEGV M V K +++ +P+HI
Sbjct:   26 DEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHI 143
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Mouse
Match: Mrps10 (mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139])

HSP 1 Score: 91.2781 bits (225), Expect = 4.478e-23
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ I VK HD  VL+SY  F       L + +   V   P  I+RF L     I KK   +YE+RT      L  LTG TASV LEYIQRNLPEGV M V K +++ +P+HI
Sbjct:   26 DEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHI 143
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Mouse
Match: Mrps10 (mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139])

HSP 1 Score: 91.2781 bits (225), Expect = 4.478e-23
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ I VK HD  VL+SY  F       L + +   V   P  I+RF L     I KK   +YE+RT      L  LTG TASV LEYIQRNLPEGV M V K +++ +P+HI
Sbjct:   26 DEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHI 143
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Mouse
Match: Mrps10 (mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139])

HSP 1 Score: 91.2781 bits (225), Expect = 4.478e-23
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ I VK HD  VL+SY  F       L + +   V   P  I+RF L     I KK   +YE+RT      L  LTG TASV LEYIQRNLPEGV M V K +++ +P+HI
Sbjct:   26 DEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHI 143
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Mouse
Match: Mrps10 (mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139])

HSP 1 Score: 92.0485 bits (227), Expect = 6.146e-23
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ I VK HD  VL+SY  F       L + +   V   P  I+RF L     I KK   +YE+RT      L  LTG TASV LEYIQRNLPEGV M V K +++ +P+HI
Sbjct:   67 DEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHI 184
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. UniProt/SwissProt
Match: sp|Q5SPH9|RT10_DANRE (Probable 28S ribosomal protein S10, mitochondrial OS=Danio rerio OX=7955 GN=mrps10 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.883e-25
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILK 518
             EPD L+ ++ ++VKGHD  VL+SY  F +     L + L        +ID+  L     I KK   +YE+RTH     + ++TG +A V LEYIQRNLPEGV M V K  +E IP+HI K
Sbjct:   55 EEPDTLYQRLSVQVKGHDRAVLDSYEFFATLAAKELGLSLEKVFEPPKHIDKLTLLKSRHIFKKHRVQYEMRTHYRCIQISRITGSSARVYLEYIQRNLPEGVAMEVTKTAMEKIPEHIQK 175
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. UniProt/SwissProt
Match: sp|Q615B0|RT10_CAEBR (Probable 28S ribosomal protein S10, mitochondrial OS=Caenorhabditis briggsae OX=6238 GN=mrps-10 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.293e-24
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 3 
Query:   63 IMSIINTIRYSLFRNIGRRMSNIVY----RDGDQINE--PDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNS--CPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIP 503
            +++I NTIR +L R+  R +  +       +  Q+    PD L+S I I+ +GHD  VL+SY  F+   C HL++     +   PYI R+V  +    F+HKK    YE RTH     +  +TG TAS  LEYI+RN+PEGVGM V    ++ +P
Sbjct:    1 MLNIANTIRSTLLRSKTRNVRTLAATVNPAEQQQVQAVLPDKLYSSIEIEYRGHDKAVLKSYTTFLQQVCKHLEIP-QGRLEVLPYI-RWVQPALRSKFVHKKYKLHYETRTHITKLEILNVTGSTASTFLEYIERNIPEGVGMRVGFTELQPLP 153
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. UniProt/SwissProt
Match: sp|Q7TQ82|RT10_RAT (28S ribosomal protein S10, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrps10 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.162e-23
Identity = 55/120 (45.83%), Postives = 70/120 (58.33%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ I VK HD  VL+SY  F       L   L+  V   P  I+RF L     I KK   +YE+RT      L  LTGCTA+V LEYIQRNLPEGV M V K +++ +P+HI
Sbjct:   21 DEPDTLYKRLSILVKAHDKAVLDSYEYFAVLAAKELG--LSIKVHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGCTANVYLEYIQRNLPEGVAMEVTKTQIQQLPEHI 138
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. UniProt/SwissProt
Match: sp|P82670|RT10_BOVIN (28S ribosomal protein S10, mitochondrial OS=Bos taurus OX=9913 GN=MRPS10 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.870e-23
Identity = 56/122 (45.90%), Postives = 70/122 (57.38%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILK 518
            +EPD L+ ++ + VKGHD  VL+SY  F       L + +   V   P  I+RF L     I KK   +YE+RT      L  LTG TA V LEYIQRNLPEGV M V K R+E +P+HI K
Sbjct:   67 DEPDTLYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISVK--VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTRLEQLPEHIKK 186
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. UniProt/SwissProt
Match: sp|P82664|RT10_HUMAN (28S ribosomal protein S10, mitochondrial OS=Homo sapiens OX=9606 GN=MRPS10 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.504e-22
Identity = 54/120 (45.00%), Postives = 70/120 (58.33%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKP-YIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +EPD L+ ++ + VKGHD  VL+SY  F       L + +   V   P  I+RF L     I+KK   +YE+RT      L  LTG TA V LEYIQRNLPEGV M V K ++E +P+HI
Sbjct:   67 DEPDILYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISIK--VHEPPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTQLEQLPEHI 184
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. TrEMBL
Match: G4LUY8 (Mitochondrial 28S ribosomal protein S10 (S10mt) (MRP-S10), putative OS=Schistosoma mansoni OX=6183 GN=Smp_099300 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.784e-40
Identity = 67/146 (45.89%), Postives = 96/146 (65.75%), Query Frame = 3 
Query:   75 INTIRYSLFRNIGRRMSNIVYRDGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            +  ++ +L  ++G   S    R+G +I+EPD L+ K++I VKGH+  VL+SY  FV   C +L + L S  R++P   R  +N  PFI+KK  ++YE RTH   +T+  +TGCTA V LEYIQRNLPEGV M V KHR+E +P+H+
Sbjct:   18 LQYLQKALASSVGVFNSGDYMREGSEIHEPDVLYKKLVITVKGHEPMVLKSYETFVKQVCDNLSIALKSETRNRPTFFRLSMNKSPFIYKKQQRQYEFRTHYQYFTVDHITGCTADVFLEYIQRNLPEGVAMEVSKHRLERLPEHL 163
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. TrEMBL
Match: A0A5K3EUM2 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.053e-39
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 3 
Query:   75 INTIRYSLFRNIGRRMSNIVYR--DGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPD 506
            +N +R ++F  +   + +  +   DG++INEPD L  K+ ++VKGH+  VL+SY  FV   C HLD+      R  P  DR  LN  PFIHKK  ++YE RT+  ++T+  LTGCTASV LEYIQRNLP GV M+V +HRVE +P+
Sbjct:   27 LNKLRQNVFPYVKAALLSTAHEPFDGEEINEPDTLIRKLELEVKGHEPAVLKSYESFVQKVCGHLDLHCNVETRHSPIFDRLSLNKSPFIHKKHQRQYEFRTYVKTFTIPHLTGCTASVFLEYIQRNLPAGVHMTVIQHRVEPLPE 172
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. TrEMBL
Match: A0A0R3U280 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS540 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.924e-38
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 3 
Query:  144 GDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILKIANS 530
            G++INEPD L  K+ ++VKGH+  VL+SY  FV   C HLD+      R  P  DR  LN  PFIHKK  ++YE RT+  ++T+  LTGCTASV LEYIQRNLP GV M+V +HRVE +P+ + +   S
Sbjct:    8 GEEINEPDTLIRKLELEVKGHEPAVLKSYESFVQKVCGHLDLHCNVETRHSPIFDRLSLNKSPFIHKKHQRQYEFRTYVKTFTIPHLTGCTASVFLEYIQRNLPAGVHMTVIQHRVEPLPEALQRPIES 136
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. TrEMBL
Match: A0A0R3WIY1 (Ribosomal_S10 domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS592 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.970e-38
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 3 
Query:  141 DGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            DG++++EPD L  K+ ++VKGH+  VLESY  FV T C H D++     R+ P  DR  LN  PFIHKK  ++YE RT+  ++T+  LTG TA+V LEYIQRNLP GV M+V +HRVEA+P+ +
Sbjct:   37 DGEEVDEPDILVKKLELEVKGHEPAVLESYDSFVRTVCGHFDLQCKVVTRNSPIFDRLSLNKSPFIHKKHQRQYEFRTYVKTFTIPHLTGSTANVFLEYIQRNLPAGVHMTVNQHRVEALPEAL 160
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. TrEMBL
Match: A0A0R3W8R1 (Ribosomal_S10 domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS6770 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.025e-38
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 3 
Query:  141 DGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILKIANS 530
            DG++++EPD L  K+ ++VKGH+  VL+SY  FV   C H +++     R+ P  DR  LN  PFI+KK  ++YE RT+  ++T+  LTGCTASV LEYIQRNLP GV M+V +HRVEA+P+ + +   S
Sbjct:   37 DGEELDEPDILIKKLELEVKGHEPSVLKSYESFVQAVCGHFNLQCKVETRNSPIFDRLSLNKSPFIYKKHQRQYEFRTYVKTFTIPHLTGCTASVFLEYIQRNLPAGVHMTVNQHRVEALPEALQRSTES 166
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Cavefish
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:103040718])

HSP 1 Score: 107.457 bits (267), Expect = 7.690e-29
Identity = 59/140 (42.14%), Postives = 76/140 (54.29%), Query Frame = 3 
Query:   93 SLFRNIGRRMSNIVYRDGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            ++F + GR       R    I EPD LF K+ + VKGHD  VL+SY  F S T   L + L         I+R  L     I KK   +YE+RTH     + ++TG TA V LEYIQRNLPEG+ M V K  +E +P+HI
Sbjct:   54 AVFLHTGRVRQTQTSRSITVIEEPDTLFQKLTVLVKGHDKAVLDSYEFFASMTAKELGLTLAKVSEPPKNIERLTLLKSVHIFKKHRVQYEMRTHFRCIEISKVTGSTAQVYLEYIQRNLPEGMAMEVTKTAIEKVPEHI 193
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Cavefish
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:103040718])

HSP 1 Score: 103.605 bits (257), Expect = 5.176e-28
Identity = 55/120 (45.83%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  153 INEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            I EPD LF K+ + VKGHD  VL+SY  F S T   L + L         I+R  L     I KK   +YE+RTH     + ++TG TA V LEYIQRNLPEG+ M V K  +E +P+HI
Sbjct:   19 IEEPDTLFQKLTVLVKGHDKAVLDSYEFFASMTAKELGLTLAKVSEPPKNIERLTLLKSVHIFKKHRVQYEMRTHFRCIEISKVTGSTAQVYLEYIQRNLPEGMAMEVTKTAIEKVPEHI 138
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Sea Lamprey
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:565937])

HSP 1 Score: 101.679 bits (252), Expect = 6.999e-28
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 3 
Query:  156 NEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
             EPD L+ ++I++VK H+  +L+SY  F++ T   L++ + S    +  I+R  +     I+KK   +YE+RTH     L  LTG TA+V LEYIQRNLPEGV M V +H +E IP+HI
Sbjct:   23 EEPDVLYKRLIVRVKAHERPLLDSYEFFITRTAQFLNIPIHSVYEPRRKIERLTVLKSVHIYKKHRVQYEMRTHFRVIELKYLTGSTANVYLEYIQRNLPEGVAMEVTRHTIEQIPEHI 141
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Yeast
Match: RSM10 (Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins [Source:SGD;Acc:S000002448])

HSP 1 Score: 46.9802 bits (110), Expect = 3.004e-7
Identity = 24/94 (25.53%), Postives = 47/94 (50.00%), Query Frame = 3 
Query:  189 IKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGM 470
            I+++ +D++ L+ Y  F+  T  +L + LT         +R+ +   PF+H K+ + +E  TH+     W        +++ YI ++   GVGM
Sbjct:   45 IQLRSYDNENLDFYSDFILRTGYYLGIPLTGPKPLPTRRERWTVIKSPFVHAKSKENFERHTHKRLIRAWDTNPEVLQMLIAYITKHSMAGVGM 138
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Nematostella
Match: EDO31212 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYK3])

HSP 1 Score: 91.2781 bits (225), Expect = 4.558e-24
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = 3 
Query:  159 EPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTS--TVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHI 512
            E + L+S I +KVKG D+ VL+SY  FV+     L+++++   +++   +I   +L S P I+KK   +YEIRTH     L  LT  TA V LEYIQRNLPEGV MSVE+  +E +P+++
Sbjct:    1 EDERLYSLISVKVKGSDEAVLKSYTHFVTRAANLLNIDISGRYSIQRATHILYTLLKS-PHIYKKHRAQYEIRTHGRMLQLKNLTCNTADVFLEYIQRNLPEGVSMSVEQTALEPMPEYL 119
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Nematostella
Match: EDO41214 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4U9])

HSP 1 Score: 51.6026 bits (122), Expect = 1.895e-8
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  174 FSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVE 479
            +S I++KV+G D  VL+ Y +FV ++   L ++ T          + VL + P  +KK   +YE + +     +  L    A + LEYIQ+N+P GV + +E
Sbjct:   65 YSNILLKVEGQDAAVLDHYCQFVKSSGHVLGLKTTKQFNLPTEAYKQVLANLPDSYKKHRVQYEFKKYGRMMQIKLLPVEQADIWLEYIQQNIPSGVNVHIE 166
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Medaka
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:101163539])

HSP 1 Score: 105.916 bits (263), Expect = 1.966e-28
Identity = 57/120 (47.50%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  159 EPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILK 518
            EPD LF ++ I VKGHD  VL+SY  F +     L + +         IDR  L     I KK   +YE+RTH     L  +TGCTA V LEYIQRNLPEG+ M V K  +E IPDHIL+
Sbjct:   68 EPDTLFQRVGILVKGHDRAVLDSYEFFATLAAKELGINVNKVFEPPMDIDRLTLLKSVHIFKKHRVQYEMRTHYRHIELSHITGCTAQVYLEYIQRNLPEGLAMKVTKTAMEKIPDHILE 187
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Medaka
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:101163539])

HSP 1 Score: 92.4337 bits (228), Expect = 9.025e-23
Identity = 51/110 (46.36%), Postives = 61/110 (55.45%), Query Frame = 3 
Query:  159 EPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHR 488
            EPD LF ++ I VKGHD  VL+SY  F +     L + +         IDR  L     I KK   +YE+RTH     L  +TGCTA V LEYIQRNLPEG+ M V K R
Sbjct:   68 EPDTLFQRVGILVKGHDRAVLDSYEFFATLAAKELGINVNKVFEPPMDIDRLTLLKSVHIFKKHRVQYEMRTHYRHIELSHITGCTAQVYLEYIQRNLPEGLAMKVTKVR 177
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Medaka
Match: mrps10 (mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:101163539])

HSP 1 Score: 92.4337 bits (228), Expect = 1.840e-22
Identity = 51/110 (46.36%), Postives = 61/110 (55.45%), Query Frame = 3 
Query:  159 EPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHR 488
            EPD LF ++ I VKGHD  VL+SY  F +     L + +         IDR  L     I KK   +YE+RTH     L  +TGCTA V LEYIQRNLPEG+ M V K R
Sbjct:  107 EPDTLFQRVGILVKGHDRAVLDSYEFFATLAAKELGINVNKVFEPPMDIDRLTLLKSVHIFKKHRVQYEMRTHYRHIELSHITGCTAQVYLEYIQRNLPEGLAMKVTKVR 216
[Close]
BLAST of 28S ribosomal protein S10 mitochondrial vs. Planmine SMEST
Match: SMESG000041503.1 (SMESG000041503.1)

HSP 1 Score: 334.724 bits (857), Expect = 4.641e-119
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 3 
Query:   66 MSIINTIRYSLFRNIGRRMSNIVYRDGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILKIANSPSLENPTD 554
            MSIINTIR SLFRNIGRRMSNIVYRDGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILKIANSPSLENPTD
Sbjct:    1 MSIINTIRCSLFRNIGRRMSNIVYRDGDQINEPDDLFSKIIIKVKGHDDQVLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYEIRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHILKIANSPSLENPTD 163
The following BLAST results are available for this feature:
BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
MRPS103.132e-2345.00mitochondrial ribosomal protein S10 [Source:HGNC S... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps-102.815e-2342.98Probable 28S ribosomal protein S10, mitochondrial ... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mRpS101.186e-2234.59gene:FBgn0038307 transcript:FBtr0083053[more]
mRpS105.093e-2235.48gene:FBgn0038307 transcript:FBtr0083054[more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrps106.066e-2642.98mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
mrpl486.482e-624.80mitochondrial ribosomal protein L48 [Source:ZFIN;A... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps105.409e-2543.70mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Mrps104.478e-2345.00mitochondrial ribosomal protein S10 [Source:MGI Sy... [more]
Mrps104.478e-2345.00mitochondrial ribosomal protein S10 [Source:MGI Sy... [more]
Mrps104.478e-2345.00mitochondrial ribosomal protein S10 [Source:MGI Sy... [more]
Mrps104.478e-2345.00mitochondrial ribosomal protein S10 [Source:MGI Sy... [more]
Mrps106.146e-2345.00mitochondrial ribosomal protein S10 [Source:MGI Sy... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5SPH9|RT10_DANRE4.883e-2542.98Probable 28S ribosomal protein S10, mitochondrial ... [more]
sp|Q615B0|RT10_CAEBR3.293e-2438.06Probable 28S ribosomal protein S10, mitochondrial ... [more]
sp|Q7TQ82|RT10_RAT1.162e-2345.8328S ribosomal protein S10, mitochondrial OS=Rattus... [more]
sp|P82670|RT10_BOVIN2.870e-2345.9028S ribosomal protein S10, mitochondrial OS=Bos ta... [more]
sp|P82664|RT10_HUMAN1.504e-2245.0028S ribosomal protein S10, mitochondrial OS=Homo s... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G4LUY82.784e-4045.89Mitochondrial 28S ribosomal protein S10 (S10mt) (M... [more]
A0A5K3EUM21.053e-3947.26Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A0R3U2802.924e-3851.16Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A0R3WIY12.970e-3851.61Ribosomal_S10 domain-containing protein OS=Hydatig... [more]
A0A0R3W8R14.025e-3848.46Ribosomal_S10 domain-containing protein OS=Taenia ... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrps107.690e-2942.14mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
mrps105.176e-2845.83mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps106.999e-2843.70mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RSM103.004e-725.53Mitochondrial ribosomal protein of the small subun... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO312124.558e-2444.17Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO412141.895e-831.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
mrps101.966e-2847.50mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
mrps109.025e-2346.36mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
mrps101.840e-2246.36mitochondrial ribosomal protein S10 [Source:NCBI g... [more]
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BLAST of 28S ribosomal protein S10 mitochondrial vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000041503.14.641e-11999.39SMESG000041503.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002831 ID=SMED30002831|Name=28S ribosomal protein S10 mitochondrial|organism=Schmidtea mediterranea sexual|type=transcript|length=597bp
ATAAAGAATAGCAGGTTTTTCAAAGATTATATTTAAATAAATTAAAATAT
TAATATTTATTAATTATGTCAATAATTAATACTATAAGATACAGTTTGTT
TCGAAATATTGGTCGTAGAATGTCTAATATCGTTTATAGAGATGGAGATC
AAATTAATGAACCAGATGATCTATTTAGTAAAATAATTATAAAAGTAAAA
GGTCATGATGATCAGGTGTTAGAAAGTTACAGGAAATTTGTCTCGACAAC
ATGTATTCATTTAGATGTTGAATTAACTTCAACTGTTCGAAGTAAACCTT
ACATAGACAGATTTGTTTTGAATTCCTGTCCATTTATTCATAAAAAAACG
TTTAAAGAATACGAAATTCGAACTCACGAGCATTCATATACTCTGTGGCA
ATTGACTGGGTGTACTGCCAGCGTAATTCTAGAGTATATTCAACGCAATT
TACCAGAAGGTGTCGGAATGTCTGTTGAGAAACATCGGGTTGAAGCGATT
CCAGATCACATCTTAAAGATTGCAAATTCTCCAAGCCTTGAAAATCCGAC
TGATTGATTTTAGTTTTAGTAATAAATGTGTTTTTTTTGAAAAAAAA
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protein sequence of SMED30002831-orf-1

>SMED30002831-orf-1 ID=SMED30002831-orf-1|Name=SMED30002831-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=164bp
MSIINTIRYSLFRNIGRRMSNIVYRDGDQINEPDDLFSKIIIKVKGHDDQ
VLESYRKFVSTTCIHLDVELTSTVRSKPYIDRFVLNSCPFIHKKTFKEYE
IRTHEHSYTLWQLTGCTASVILEYIQRNLPEGVGMSVEKHRVEAIPDHIL
KIANSPSLENPTD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0005763mitochondrial small ribosomal subunit
GO:0005840ribosome
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036838Ribosomal_S10_dom_sf
IPR040055MRPS10
IPR027486Ribosomal_S10_dom
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 41..138
e-value: 7.7E-16
score: 68.6
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 42..137
e-value: 6.4E-18
score: 64.8
IPR036838Ribosomal protein S10 domain superfamilyGENE3DG3DSA:3.30.70.600coord: 28..160
e-value: 4.8E-34
score: 118.8
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILYSSF54999Ribosomal protein S10coord: 40..137
IPR04005528S ribosomal protein S10, mitochondrialPANTHERPTHR13334MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10coord: 31..151