Retrovirus-related Pol polyprotein from transposon
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002807 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 93.2041 bits (230), Expect = 8.770e-21 Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 +T + +P+P + + L + +F+ DL NAY+ V + E TAF T F + + FG++ APA FQ L++ VL + + VYL+DILIFS L+ H + VL++L GL + EKC F + + FL Sbjct: 586 ITVKNTYPLPLMSSAFERLQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFL 723
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: CR925755.2 (pep chromosome:GRCz11:17:42486740:42492668:-1 gene:ENSDARG00000116402.1 transcript:ENSDART00000183946.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR925755.2) HSP 1 Score: 92.4337 bits (228), Expect = 1.311e-20 Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 ++T + +P+P + + L + +F+ DL NAY+ V + TAF T F + + FG++ APA FQ L++ VL + + VYL+DILIFS L+ H + VL++L GL + EKC F + ++FL Sbjct: 558 SITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFL 696
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 92.0485 bits (227), Expect = 1.603e-20 Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 ++T + +P+P + + L + +F+ DL NAY+ V + TAF T F + + FG++ APA FQ L++ VL + + VYL+DILIFS L+ H + VL++L GL + EKC F + ++FL Sbjct: 559 SITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFL 697
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 90.8929 bits (224), Expect = 4.739e-20 Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 ++T + +P+P + + L + +F+ DL NAY+ V + TAF T F + + FG++ APA FQ L++ VL + + VYL+DILIFS L+ H + VL++L GL + EKC F + ++FL Sbjct: 585 SITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFL 723
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX890543.1 (pep chromosome:GRCz11:14:42224893:42231293:-1 gene:ENSDARG00000114583.1 transcript:ENSDART00000185486.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX890543.1) HSP 1 Score: 89.3521 bits (220), Expect = 1.787e-19 Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 +T + +P+P + + L ++ F+ DL NAY+ V + E TAF T F + + FG+ APA FQ L++ VL + + VYL+DILIFS L+ H + VL++L L + EKC F + I FL Sbjct: 575 ITVKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLVRIREGDEWKTAFNTPTGHFEYRVLPFGLTNAPAVFQALVNDVLRDMVNRFVFVYLDDILIFSPCLQIHIQHVRQVLQRLLENQLYVKAEKCVFHAQSIPFL 712
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 108.997 bits (271), Expect = 7.232e-31 Identity = 49/132 (37.12%), Postives = 82/132 (62.12%), Query Frame = 2 Query: 392 FPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 + P IE+ L+ L S++FS DL + YYQ+ + + TAF F F++M G+ APATFQ+LM +G ++ E +VYL+D+++F + LE H+ RL V ++L+ GL+++PEKC F + + ++ Sbjct: 394 YTTPRIEDALNCLVGSKWFSVLDLRSGYYQLPMHPEDKEKTAFICPLGFFEFNRMPQGLCGAPATFQRLMERTVGDMHLLEVLVYLDDLIVFGRTLEEHEQRLLKVFDRLEKEGLKLSPEKCQFCQPSVNYV 525 HSP 2 Score: 44.2838 bits (103), Expect = 7.232e-31 Identity = 32/100 (32.00%), Postives = 52/100 (52.00%), Query Frame = 1 Query: 109 KSEIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRR-QPA-------HIEE---NGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN 372 KS + + ++ F +N D+G + KHKI + + P + RR P H+EE GII++ SP+ +P+V V K+ IR+ +D+R LN Sbjct: 288 KSRLRKHLNEHSALFSRNDLDMGCSTSTKHKIRLREDKPFRERSRRIAPGDLEDLRKHLEELKAAGIIKESRSPYASPIVVV-RKKNGSIRMCVDYRTLN 386 HSP 3 Score: 20.7866 bits (42), Expect = 7.232e-31 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 786 STDRSKIEAILNFERP 833 +TD SKIEA+ ++ +P Sbjct: 535 ATDPSKIEAVSSWPKP 550
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: alkbh5 (alkB homolog 5, RNA demethylase [Source:Xenbase;Acc:XB-GENE-987580]) HSP 1 Score: 117.857 bits (294), Expect = 1.762e-29 Identity = 55/138 (39.86%), Postives = 87/138 (63.04%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 V++ A+PMP ++E+++ L ++RY +T DL Y+QV L E + TAF T Q+ + ++ FG+ APATFQ++M +L K + A YL+D++IFS D ESH R+ VL+ + GL NP+KC +E ++L Sbjct: 297 VSKFDAYPMPRVDELIERLGQARYITTLDLTKGYWQVPLTEGAKEKTAFSTPEGQWQYKRLPFGLHGAPATFQRMMDRIL-KPHRGYASAYLDDVVIFSPDWESHLPRVQAVLDSIWKAGLTANPKKCAMGLEEARYL 433
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 114.005 bits (284), Expect = 6.665e-29 Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVL-GKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT A+PMP ++E+LD L ++Y +T DL Y+Q+ LA + +AF T + F+ M FGM APATFQ+L++ +L G ++ +A YL+DI +FS+ E H L V ++Q GL + PEKCH E+++L Sbjct: 399 VTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTVMPFGMRNAPATFQRLVNRLLEGMQDFAQA--YLDDIAVFSQTWEEHLQHLQRVFAQIQDAGLTLKPEKCHLAMAEVQYL 535 HSP 2 Score: 33.113 bits (74), Expect = 6.665e-29 Identity = 30/110 (27.27%), Postives = 51/110 (46.36%), Query Frame = 1 Query: 94 LKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMT-TEGPILIKPRRQPAH-------------IEEN---GIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN 372 L + ++ ++ ++ F N G+T+ +HK+ T T+ PI R PA+ I+E G+I +SPW +P+V V K+ R +D+R LN Sbjct: 297 LHLSQQDQLRKILRSYSPMFSANP---GRTHWAEHKVDTGTQLPI-----RSPAYRVAEAVRPEMKSQIDEMLAFGVITPSHSPWASPVVLVPKKDG-STRFCVDYRRLN 397
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: ENSXETT00000015952.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:63280736:63282565:1 gene:ENSXETG00000009808.1 transcript:ENSXETT00000015952.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 105.145 bits (261), Expect = 7.084e-29 Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 2 Query: 392 FPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKL 721 + +P IEE L+ LN S++F+ DL + YYQV +A + TAF + F++M G+ APATFQ+LM +LG L+ +E +VYL+DI++F LE H+ RL NV+++L Sbjct: 492 YTLPRIEETLEALNGSKWFTVMDLRSGYYQVPMASEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKMLGDLSPRECLVYLDDIIVFGTTLEEHEQRLMNVIDRL 601 HSP 2 Score: 41.9726 bits (97), Expect = 7.084e-29 Identity = 29/100 (29.00%), Postives = 47/100 (47.00%), Query Frame = 1 Query: 109 KSEIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQPAHIEEN-----------GIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN 372 K + N + + + F ++ D+G +H I ++ P +PRR P E+ GII SP+ +P+V V K+ IRL +D+R LN Sbjct: 386 KQRLSNGLLERRQVFSTDEMDVGCAKSTQHTIRLSDSTPFRERPRRVPPKDREDLQRTLQEMKRRGIIADSRSPYASPIVIVRKKDG-SIRLCVDYRTLN 484
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: ENSXETT00000034712.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:33567219:33572531:-1 gene:ENSXETG00000011772.1 transcript:ENSXETT00000034712.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 99.3673 bits (246), Expect = 8.583e-23 Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 +T + +P+P I E+ D L ++ FS DL AY + + E TAF T+ + + M FG+ APA FQ+ ++ + L K +VYL+DILIFS+DLE+H+S++ L +L+ L EKC F +I FL Sbjct: 582 ITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFL 719
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.056e-29 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 TV +R P+PN++E+L L YF+T DL ++Q+E+ +S + TAF TK + + +M FG+ APATFQ+ M+ +L L K +VYL+DI++FS L+ H L V EKL L++ +KC FLK+E FL Sbjct: 275 TVGDRH--PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFL 411 HSP 2 Score: 37.7354 bits (86), Expect = 2.056e-29 Identity = 27/79 (34.18%), Postives = 35/79 (44.30%), Query Frame = 1 Query: 181 TNILKHKIMTTEGPILIKPRRQPAHIEE-----------NGIIRKCNSPWNTPMVCVWNKE----KQDIRLYLDFRALN 372 TN KH I T L P E+ GIIR NSP+N+P+ V K+ KQ R+ +D+R LN Sbjct: 194 TNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.262e-29 Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T+ +R +P+PN++E+L L + +YF+T DL ++Q+E+ E+S + TAF TK+ + + +M FG+ APATFQ+ M+ +L L K +VYL+DI+IFS L H + + V KL L++ +KC FLKKE FL Sbjct: 274 TIPDR--YPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFL 410 HSP 2 Score: 35.039 bits (79), Expect = 3.262e-29 Identity = 30/80 (37.50%), Postives = 39/80 (48.75%), Query Frame = 1 Query: 181 TNILKHKIMTTE-GPILIK--PRRQPAHIE-EN--------GIIRKCNSPWNTPMVCVWNKEKQD----IRLYLDFRALN 372 TN +KH + TT PI K P Q IE EN G+IR+ NSP+N+P V K R+ +D+R LN Sbjct: 192 TNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLN 271
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|Q8I7P9|POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.364e-25 Identity = 50/139 (35.97%), Postives = 84/139 (60.43%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 TVT +P+P+I L +L ++YF+T DL + ++Q+ + E TAF T ++ F ++ FG+ APA FQ+++ +L + K VY++DI++FS+D ++H L VL L L++N EK HFL +++FL Sbjct: 189 TVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFL 327 HSP 2 Score: 36.1946 bits (82), Expect = 1.364e-25 Identity = 19/49 (38.78%), Postives = 30/49 (61.22%), Query Frame = 1 Query: 241 RQPAHIEENGIIRKCNSPWNTPMVCVWNKEK----QDIRLYLDFRALNS 375 RQ + ++GIIR NSP+N+P+ V K K + R+ +DF+ LN+ Sbjct: 141 RQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNT 189
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.238e-22 Identity = 44/132 (33.33%), Postives = 80/132 (60.61%), Query Frame = 2 Query: 392 FPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 FP+P I+++LD L ++YFS DL + ++Q+EL E S ++T+F T + F+++ FG+ AP +FQ++M+I + +A +Y++D+++ + L V K + L+++PEKC F E+ FL Sbjct: 388 FPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFL 519
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 2.774e-20 Identity = 48/132 (36.36%), Postives = 78/132 (59.09%), Query Frame = 2 Query: 392 FPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 FP+P I+ +L + ++ F+T DL + Y+Q+ + K TAF T + ++ ++ M FG+ AP+TF + M+ L + VYL+DILIFS+ E H L+ VLE+L+ L + +KC F +E +FL Sbjct: 690 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVN--VYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFL 819
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A1X7T0X0 (Reverse transcriptase domain-containing protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 2.602e-40 Identity = 63/138 (45.65%), Postives = 96/138 (69.57%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT++ A+P+P I+E LDTL S +F+T DL + Y+QVE+ EK + TAF T+ F F+ M FG+ APATFQ+LM ++L L W+ +VY++D++I KD++SH + + V +L+ GL++ P KC F K+E+KFL Sbjct: 475 VTKKDAYPLPRIDETLDTLAGSVWFTTLDLLSGYWQVEVEEKDRDKTAFCTREGLFHFNVMPFGLCNAPATFQRLMDMLLAGLLWESCLVYIDDVIIMGKDVQSHLANIATVFSRLRDAGLKVKPSKCEFFKREVKFL 612 HSP 2 Score: 51.6026 bits (122), Expect = 2.602e-40 Identity = 32/104 (30.77%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 109 KSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEG-PILIKPRRQPAHIEENG-----------IIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNSDRK 384 K + Y+L+ + F + D G T++L+H I T PI PRR P H ++ II K +SPW++P++ V K+ +R +D+R +N K Sbjct: 375 KEQFYSLLLSFSEVFPDDDDDFGLTHLLQHSIDTGSAPPIRQPPRRVPKHKQQEAHQLLQSMLDRNIIAKSHSPWSSPIILV-QKKDGSLRFCIDYRKVNEVTK 477
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A5S6Q2Z4 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 2.961e-40 Identity = 66/138 (47.83%), Postives = 94/138 (68.12%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT++ A+P+P I+E LD + S +FST DL + ++QVEL + S TAF T + F + FG+ APATFQ+LM VL LNWK +VYL+D++IF+++ E H RL VLE+L+ GL+ P+KC F +KEIK+L Sbjct: 548 VTKKDAYPLPRIDEALDAMQGSVWFSTLDLMSGFWQVELEDGSQEKTAFTTHEGLYHFKVLPFGLTGAPATFQRLMEQVLSGLNWKCCVVYLDDVIIFARNYEEHLYRLREVLERLRKAGLKARPDKCKFFRKEIKYL 685 HSP 2 Score: 47.7506 bits (112), Expect = 2.961e-40 Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1 Query: 106 RKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMT-TEGPILIKPRRQPA-----------HIEENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNSDRK 384 +K +L+++ AF + ++G+T ILKHKI T + P+ PRR ++E +I K SPW + +V V K +RL +D+RALN+ K Sbjct: 447 QKQRFQDLVDEFQDAFAWSDENLGRTTILKHKIDTGSAKPVRQMPRRLSPLEREEVAQMIRNMERRNLIEKSVSPWASRVVPV-RKRDGTLRLCVDYRALNAVTK 550
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A0V0RD96 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Trichinella nelsoni OX=6336 GN=pol PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.032e-40 Identity = 65/138 (47.10%), Postives = 88/138 (63.77%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT A P+P I++ LD L +++FST DL + Y+QVE+AE+ TAF T F F M FG+ APATFQ+LM L L WK +VYL+DI++F K E H RL VL +LQ VGL+I PEKC +++ + +L Sbjct: 568 VTRVDAQPIPRIDDTLDALAGAKWFSTLDLASGYWQVEVAERDREKTAFSTPLGLFQFRVMPFGLCNAPATFQRLMEKALRGLTWKTCLVYLDDIIVFGKTEEEHLERLEGVLSRLQSVGLKIKPEKCQLMRQSVHYL 705 HSP 2 Score: 52.7582 bits (125), Expect = 3.032e-40 Identity = 34/131 (25.95%), Postives = 63/131 (48.09%), Query Frame = 1 Query: 28 TIDAHFGGEINDSMRLKRTM---EVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEG-PILIKPRRQPAHIEE-----------NGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 ++ + G ++ S RT+ K + +++ K KA + + D+G+T+++KH+I T P+ + PRR P E G+I + PW++P+V V K+ R +D+R LN+ Sbjct: 438 SVGSDVGAGVDGSNDWTRTLVDGAECSARSKRALRSILRKCGKAISRGEADLGRTSLVKHRIETGGAQPVKLPPRRLPQAQREVVDRLIREMLHMGVIEPASGPWSSPVVLVRKKDGSP-RFCVDYRRLNA 567
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A5S6Q6P2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.273e-40 Identity = 65/138 (47.10%), Postives = 94/138 (68.12%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT++ A+P+P I+E LD + S +FST DL + ++QVEL + S TAF T + F + FG+ APATFQ+LM VL LNWK +VYL+D++IF+++ + H RL VLE+L+ GL+ P+KC F +KEIK+L Sbjct: 548 VTKKDAYPLPRIDEALDAMQGSVWFSTLDLMSGFWQVELEDGSQEKTAFTTHEGLYHFKVLPFGLTGAPATFQRLMEQVLSGLNWKCCVVYLDDVIIFARNYKEHLYRLREVLERLRKAGLKARPDKCKFFRKEIKYL 685 HSP 2 Score: 48.1358 bits (113), Expect = 9.273e-40 Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1 Query: 106 RKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMT-TEGPILIKPRRQPA-----------HIEENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNSDRK 384 +K +L+++ AF + ++G+T ILKHKI T + P+ PRR ++E +I K SPW + +V V K +RL +D+RALN+ K Sbjct: 447 QKQRFQDLVDEFQDAFAWSDENLGRTTILKHKIDTGSAKPVRQMPRRLSPLEREEVAQMIRNMERRNLIEKSVSPWASRVVPV-RKRDGTLRLCVDYRALNAVTK 550
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A5S6Q4F0 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.305e-39 Identity = 65/138 (47.10%), Postives = 88/138 (63.77%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 V+ R A+P+P I+E L+ L +RYFST DL + Y+QVEL E + TAF T F F+ M FG+ APATFQ+LM VL L W +VYL+DI++FS+ E H L+ VL +LQ GL+ N KC KE+++L Sbjct: 613 VSRRDAYPIPRIDETLEALAGARYFSTIDLLSGYWQVELTEAAKEKTAFITHDGLFQFNVMPFGLTGAPATFQRLMEHVLAGLKWNTCLVYLDDIIVFSRTAEEHVEHLSQVLNRLQKAGLKANASKCKLFCKEVRYL 750 HSP 2 Score: 53.5286 bits (127), Expect = 1.305e-39 Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 1 Query: 94 LKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAHIE------------ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN 372 L ++ +++ ++ K AF +++DIG+T++LKH I+T + P R+ A +E +N II NSPW +V V K+ +RL +D+R LN Sbjct: 508 LTASQRKKLHGMLSKFRNAFAASEFDIGRTSVLKHDIVTDNIRPVRHPLRRLAPVERKEVSQLIQRLLDNKIIEPSNSPWAAGIVPV-RKKDGSLRLCVDYRKLN 611
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000034038.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:3120146:3124090:1 gene:ENSAMXG00000040885.1 transcript:ENSAMXT00000034038.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 141.739 bits (356), Expect = 1.691e-42 Identity = 60/139 (43.17%), Postives = 96/139 (69.06%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 + + R AFP+P +EE L+ L E++YFST DL + Y+QVE+AE + TAF T F ++M FG+ +P+TFQ+LM+ G LN++ ++YL+DI+IFS+ + H RL V ++L+ GL++ P+KCH L++E+ +L Sbjct: 299 SCSTRDAFPLPRVEEALEALGEAKYFSTLDLTSGYWQVEVAEADKHKTAFSTPMGLFEANRMPFGLQNSPSTFQRLMTCCFGDLNFESLLIYLDDIVIFSRTFDEHLERLQMVFDRLRKYGLKLKPQKCHLLRREVLYL 437 HSP 2 Score: 50.447 bits (119), Expect = 1.691e-42 Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 115 EIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQP-----------AHIEENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 ++ + I KN F K+ D G T ++KH+I + P + R+ P +EE G+IR SP+ +P+V V K+ +R+ +D+R LNS Sbjct: 202 QMTDKILKNSDVFSKHHLDYGHTTVVKHEIPLVDPRPFRLPYRKIPPSQYQAVRKAITEMEEAGVIRPSKSPYASPIVVV-TKKDGSLRICMDYRKLNS 299
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000052546.1 (pep primary_assembly:Astyanax_mexicanus-2.0:2:13031363:13036570:1 gene:ENSAMXG00000033629.1 transcript:ENSAMXT00000052546.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 132.494 bits (332), Expect = 1.427e-38 Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT + A+P+P +EE LD L +++FST DL Y+QV + + TA T F +S+M FG+ APATFQ+LM +VLG L + +VYL+DI+IFS+D +SH RL V +L+ GL++ P KC LK E+KFL Sbjct: 784 VTCKDAYPLPRVEESLDALGNAQWFSTLDLTAGYFQVAVKDSDREKTAVTTPFGLFQWSRMPFGLCNAPATFQRLMGVVLGDLAFDILLVYLDDIIIFSRDFKSHCERLELVFNRLRHHGLKLKPSKCFLLKPEVKFL 921 HSP 2 Score: 46.2098 bits (108), Expect = 1.427e-38 Identity = 31/98 (31.63%), Postives = 49/98 (50.00%), Query Frame = 1 Query: 115 EIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEG-PILIKPRRQP--------AHIE---ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN 372 E+ +L+EK+ F K+ D G T + H I T + P+ + RR P H++ + GI+ + SPW +P V V K+ +R D+R LN Sbjct: 686 ELMDLLEKHKDIFSKSDSDFGYTTAVTHSIPTGDAPPVKQRHRRVPPQVFQEFKKHVQSLVDRGILEESCSPWASPAVIVIKKDGT-VRFCCDYRRLN 782
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000045469.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000976.1:426503:430633:1 gene:ENSAMXG00000030479.1 transcript:ENSAMXT00000045469.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 132.88 bits (333), Expect = 2.074e-38 Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + AFP+P IEE LD L+ S++FST DL + Y QV + EK TAF T F F++M FG+ AP+TFQ+LM + G ++ ++YL+DI+IFS DL+ H RL+ VL +LQ L++ EKCHF + + +L Sbjct: 419 TRKDAFPLPRIEESLDALSGSKWFSTLDLASGYNQVPVLEKDKEKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDQSFHTLLLYLDDIVIFSSDLQQHLQRLDMVLSRLQQHNLKLKLEKCHFFQTRVSYL 555 HSP 2 Score: 45.4394 bits (106), Expect = 2.074e-38 Identity = 29/98 (29.59%), Postives = 54/98 (55.10%), Query Frame = 1 Query: 127 LIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQP--------AHIEE---NGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNSDRK 384 L+ ++ F ++ D+G T +++H I + P+ + RR P AHI+E + ++R +SP+ +P+V V K+ IRL +D+R LN+ + Sbjct: 324 LLRRHQNLFSEHAGDLGCTTLVQHSIPLLDSVPVRQRYRRLPPSQYDLVKAHIQELVEHQVVRPSSSPYASPIVVV-QKKDGSIRLCVDYRQLNAKTR 420
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000042297.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002193.1:21:2557:1 gene:ENSAMXG00000030761.1 transcript:ENSAMXT00000042297.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 132.88 bits (333), Expect = 1.275e-37 Identity = 60/137 (43.80%), Postives = 95/137 (69.34%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + A+ +PNIEE L+ SR+FS DL + YYQVE+ E+ + TAF T + F+++ G+ AP+TFQ++M +G +N KE +V+L+D+++FS LE H+SRL VL KL+ GL+++PEKCHF ++ +++L Sbjct: 188 TIKDAYALPNIEETFSALHGSRWFSVMDLKSGYYQVEVEEEDKHKTAFVTPMGFWEFNRLPQGVTNAPSTFQRVMEKCMGTMNLKEVLVFLDDLIVFSDTLEEHESRLMRVLTKLKDFGLKLSPEKCHFFRRSVRYL 324 HSP 2 Score: 42.743 bits (99), Expect = 1.275e-37 Identity = 36/130 (27.69%), Postives = 58/130 (44.62%), Query Frame = 1 Query: 25 CTIDAHFGGEINDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAH-------------IEENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 C++ A GG+ S L+ + L K I + + F D G T + H+I ++ P K R +P H +++ IIR+ S + +P+V V K+ IRL +D+R LNS Sbjct: 61 CSLLAPVGGQSMISFDLEESQ--LSAEWKDRITANLNSIPEVFANGDLDYGHTTAVTHRIRLSD-PTPFKQRARPIHPSDYEAVRLHLKELQDANIIRESESSFASPVVVV-KKKSGAIRLCVDYRKLNS 186
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000053730.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002271.1:240468:243660:-1 gene:ENSAMXG00000043631.1 transcript:ENSAMXT00000053730.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 132.88 bits (333), Expect = 1.306e-37 Identity = 60/137 (43.80%), Postives = 95/137 (69.34%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + A+ +PNIEE L+ SR+FS DL + YYQVE+ E+ + TAF T + F+++ G+ AP+TFQ++M +G +N KE +V+L+D+++FS LE H+SRL VL KL+ GL+++PEKCHF ++ +++L Sbjct: 320 TIKDAYALPNIEETFSALHGSRWFSVMDLKSGYYQVEVEEEDKHKTAFVTPMGFWEFNRLPQGVTNAPSTFQRVMEKCMGTMNLKEVLVFLDDLIVFSDTLEEHESRLMRVLTKLKDFGLKLSPEKCHFFRRSVRYL 456 HSP 2 Score: 42.743 bits (99), Expect = 1.306e-37 Identity = 36/130 (27.69%), Postives = 58/130 (44.62%), Query Frame = 1 Query: 25 CTIDAHFGGEINDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAH-------------IEENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 C++ A GG+ S L+ + L K I + + F D G T + H+I ++ P K R +P H +++ IIR+ S + +P+V V K+ IRL +D+R LNS Sbjct: 193 CSLLAPVGGQSMISFDLEESQ--LSAEWKDRITANLNSIPEVFANGDLDYGHTTAVTHRIRLSD-PTPFKQRARPIHPSDYEAVRLHLKELQDANIIRESESSFASPVVVV-KKKSGAIRLCVDYRKLNS 318
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000045600.1 (pep primary_assembly:ASM223467v1:4:26167161:26171153:-1 gene:ENSORLG00000023514.1 transcript:ENSORLT00000045600.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 134.035 bits (336), Expect = 1.521e-40 Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + AFP+P I+E LD L +++F+T DL + Y QVE+AEK TAF T F F++M FG+ AP+TFQ+LM + G ++ ++YL+D++IFS +E H RL V +L+ GL++ KCHF +K++K+L Sbjct: 403 TRKDAFPLPRIDESLDALAGAQWFTTLDLASGYSQVEVAEKDKAKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERLFGDCRFQSVLLYLDDVIIFSSSVEQHLQRLEQVFSRLEAQGLKVKLSKCHFFQKQVKYL 539 HSP 2 Score: 51.2174 bits (121), Expect = 1.521e-40 Identity = 39/137 (28.47%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 7 NQEKVLCTIDAHFGGEI--NDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQP--------AHIE---ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 N E + TI F E+ + + + +E L K + L+ K + F K+ D+G TN++ H+I + E P+ RR P +HI+ ++ +IR+ +SP+ +P+V V K+ +R+ +D+R LN+ Sbjct: 269 NSESCVATI---FSSEVTPDPTDSILPQLEHLDERDKERVKALLSKYNRVFAKDDLDVGCTNLMTHEIPLLDETPVRQPYRRIPPSQYELAHSHIQQLLQSQVIRESSSPYASPIVLV-QKKDGGLRMCVDYRQLNA 401
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000040501.1 (pep primary_assembly:ASM223467v1:1:1251188:1255180:-1 gene:ENSORLG00000023024.1 transcript:ENSORLT00000040501.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 131.724 bits (330), Expect = 8.351e-40 Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + AFP P I+E LD L +++F+T DL + Y QVE+AEK TAF T F F++M FG+ AP+TFQ+LM + G ++ ++YL+D++IFS +E H RL V +L GL++ KCHF +K++K+L Sbjct: 403 TRKDAFPSPRIDESLDALAGAQWFTTLDLASGYSQVEVAEKDKAKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERLFGDCRFQSVLLYLDDVIIFSSSVEQHLQRLEQVFSRLDAQGLKVKLSKCHFFQKQVKYL 539 HSP 2 Score: 51.2174 bits (121), Expect = 8.351e-40 Identity = 39/137 (28.47%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 7 NQEKVLCTIDAHFGGEI--NDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQP--------AHIE---ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 N E + TI F E+ + + + +E L K + L+ K + F K+ D+G TN++ H+I + E P+ RR P +HI+ ++ +IR+ +SP+ +P+V V K+ +R+ +D+R LN+ Sbjct: 269 NSESCVATI---FSSEVTPDPTDSILPQLEHLDERDKERVKALLSKYNRVFAKDDLDVGCTNLMTHEIPLLDETPVRQPYRRIPPSQYELARSHIQQLLQSQVIRESSSPYASPIVLV-QKKDGGLRMCVDYRQLNA 401
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000045141.1 (pep primary_assembly:ASM223467v1:23:22495254:22500491:-1 gene:ENSORLG00000029628.1 transcript:ENSORLT00000045141.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 135.961 bits (341), Expect = 8.563e-39 Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 VT + A+P+P +EE LD L ++ FST DL Y+QV + E+ TA T F +++M FG+ APATFQ+LM +VLG L++ +VYL+DIL++S+D ESH RL V ++L+ GL++ P KC L+ E+KFL Sbjct: 781 VTCKDAYPLPRVEEALDALGDAHLFSTLDLTAGYFQVAMNEEDQGKTAVTTPFGLFEWTRMPFGLCNAPATFQRLMGLVLGDLSFDILLVYLDDILVYSRDFESHCERLGLVFQRLRQHGLKLKPSKCFLLRPEVKFL 918 HSP 2 Score: 43.5134 bits (101), Expect = 8.563e-39 Identity = 30/98 (30.61%), Postives = 48/98 (48.98%), Query Frame = 1 Query: 115 EIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGP-ILIKPRRQP--------AHIEE---NGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN 372 ++ +L+ + F +N+ D G T + H I T + P I + RR P H+ E GI+++ SPW +P V V K+ +R D+R LN Sbjct: 683 QLVSLLATHQDVFSQNENDYGYTTSVTHCISTGDAPPIKQRHRRVPPQVFQEFKKHVHELVSQGILKESTSPWASPAVIVIKKDGS-VRFCCDYRRLN 779
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000039099.1 (pep primary_assembly:ASM223467v1:16:31928608:31932747:-1 gene:ENSORLG00000023909.1 transcript:ENSORLT00000039099.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 128.642 bits (322), Expect = 9.675e-38 Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + AFP+P IEE LD L+ +R+FST DL + Y+QV +AE TAF T F +++M FG+ AP+TFQ+LM + G+ + ++YL+DI++FS +E H RL VLE+LQ+ GL++ KC F + ++ +L Sbjct: 410 TRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYL 546 HSP 2 Score: 45.4394 bits (106), Expect = 9.675e-38 Identity = 29/109 (26.61%), Postives = 59/109 (54.13%), Query Frame = 1 Query: 85 MEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQPA--------HIE---ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 + L + ++ L+ K + F ++ D+G T+++ H+I + + P+ + RR P HI ++ +IR+ +SP+ +P+V + K+ +RL +D+R LNS Sbjct: 301 LSALSAGEQEKVRTLLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLI-RKKDGGLRLCVDYRQLNS 408 HSP 3 Score: 22.7126 bits (47), Expect = 9.675e-38 Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 786 STDRSKIEAILNFERP 833 STD K+EA+ N+E P Sbjct: 556 STDPGKVEAVANWEPP 571
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000029819.1 (pep primary_assembly:ASM223467v1:24:6358775:6362914:-1 gene:ENSORLG00000022361.1 transcript:ENSORLT00000029819.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 128.642 bits (322), Expect = 1.469e-37 Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 2 Query: 377 TERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 T + AFP+P IEE LD L+ +R+FST DL + Y+QV +AE TAF T F +++M FG+ AP+TFQ+LM + G+ + ++YL+DI++FS +E H RL VLE+LQ+ GL++ KC F + ++ +L Sbjct: 410 TRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYL 546 HSP 2 Score: 44.669 bits (104), Expect = 1.469e-37 Identity = 29/109 (26.61%), Postives = 59/109 (54.13%), Query Frame = 1 Query: 85 MEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKI-MTTEGPILIKPRRQPA--------HIE---ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 + L + ++ L+ K + F ++ D+G T+++ H+I + + P+ + RR P HI ++ +IR+ +SP+ +P+V + K+ +RL +D+R LNS Sbjct: 301 LSALSAGEQEKVRALLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLI-RKKDGGLRLCVDYRQLNS 408 HSP 3 Score: 22.7126 bits (47), Expect = 1.469e-37 Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 786 STDRSKIEAILNFERP 833 STD K+EA+ N+E P Sbjct: 556 STDPGKVEAVANWEPP 571
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000029259.1 (SMESG000029259.1) HSP 1 Score: 174.096 bits (440), Expect = 9.338e-80 Identity = 83/139 (59.71%), Postives = 106/139 (76.26%), Query Frame = 2 Query: 374 VTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAI-VYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 +TERQAFPMPN++E+LD L+ SRYFS+ DLGNAYYQV+L ++S TAF TK QFCF++M FG+AAAP TFQ+LM+ VL L WK+ + VYL+DILIF+K E H + VL K+ GLR+NPEKC +KE+KFL Sbjct: 2790 ITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDL-WKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFL 2927 HSP 2 Score: 141.739 bits (356), Expect = 9.338e-80 Identity = 70/135 (51.85%), Postives = 92/135 (68.15%), Query Frame = 1 Query: 22 LCTIDAHFGGEINDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAHIEE-----------NGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALN--SDRKA 387 +C I+A FG I D RL+ ++VLK+ + + + N FM +KWDIG TN++KHKI+T PI+IKPRRQP ++E+ NGIIRKCNSPWNTP+VCVW KEK+DIRL LDFR LN ++R+A Sbjct: 2661 ICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQA 2795
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000081257.1 (SMESG000081257.1) HSP 1 Score: 139.813 bits (351), Expect = 4.448e-52 Identity = 67/139 (48.20%), Postives = 97/139 (69.78%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 +VTE+ +FPMP+++ +LD L +S+ F + DLG AYY VEL E S TAF TK QFCF+++ FG++ APATFQKLM +L L +K +VYL+DILI+ ++ E+H L V +++ GL++NPEKC F K + F+ Sbjct: 513 SVTEKFSFPMPDMQLLLDCLGKSKIFYSIDLGQAYYLVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDDILIYGENQETHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFI 651 HSP 2 Score: 83.9593 bits (206), Expect = 4.448e-52 Identity = 50/118 (42.37%), Postives = 70/118 (59.32%), Query Frame = 1 Query: 55 INDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAHIE-----------ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 DS RLK T+ LK+ + SE+ LI + FM +++D+G T ++ H++ T+ PIL PR QP H+E E G++RKC SPWNTP+V V K +R+ LDFR LNS Sbjct: 397 FTDSDRLKNTLLTLKLDKNSELGTLISQFSNIFMASRFDLGHTKVITHELKTSGPPILQNPRGQPMHLEAKVEELVQNLLEAGVVRKCQSPWNTPLVIV-GKPDGSVRICLDFRLLNS 513
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000001439.1 (SMESG000001439.1) HSP 1 Score: 163.31 bits (412), Expect = 2.062e-50 Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = 1 Query: 1 INNQEKVLCTIDAHFGGEINDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAHIEE 264 INNQEKV+CTIDAHFG EINDSM+LK+TMEVLKI RKSE+YNLIEKNIKAFM+NKWDIGKTNILKHKI TEGPIL+KPRRQPAH+EE Sbjct: 49 INNQEKVICTIDAHFGDEINDSMKLKKTMEVLKIDRKSEVYNLIEKNIKAFMENKWDIGKTNILKHKITKTEGPILVKPRRQPAHLEE 136
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000038955.1 (SMESG000038955.1) HSP 1 Score: 134.035 bits (336), Expect = 2.421e-47 Identity = 66/139 (47.48%), Postives = 95/139 (68.35%), Query Frame = 2 Query: 371 TVTERQAFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 +VTE+ +F P+++ +LD L S+ FS+ DLG AYYQVEL E S TAF TK QFCF+++ FG++ APATFQKLM +L L +K +VYL++ILI+ ++ E H L V +++ GL++NPEKC F K + F+ Sbjct: 202 SVTEKFSFYSPDMKLLLDCLGNSKIFSSIDLGQAYYQVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDEILIYGENQEIHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFI 340 HSP 2 Score: 73.559 bits (179), Expect = 2.421e-47 Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1 Query: 1 INNQEKVLCTIDAHFGGEINDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAFMKNKWDIGKTNILKHKIMTTEGPILIKPRRQPAHIE-----------ENGIIRKCNSPWNTPMVCVWNKEKQDIRLYLDFRALNS 375 +NN E +L + DS RLK T+ LK+ + S++ LI K FM +++D+G T ++ H+I +++P H+E E G++RK SPWNTP+V V K IR+ LDFR LNS Sbjct: 85 VNNIESLLVN------KKFTDSDRLKITLSTLKLDKNSKLGTLISKFSNIFMASRFDLGHTKVITHEI-----------KKKPMHLEGKVEELVQNLLEAGVVRKSISPWNTPLVIV-GKLDGSIRMCLDFRLLNS 202
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000080238.1 (SMESG000080238.1) HSP 1 Score: 163.31 bits (412), Expect = 7.081e-47 Identity = 73/133 (54.89%), Postives = 104/133 (78.20%), Query Frame = 2 Query: 389 AFPMPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFSQMLFGMAAAPATFQKLMSIVLGKLNWKEAIVYLNDILIFSKDLESHKSRLNNVLEKLQVVGLRINPEKCHFLKKEIKFL 787 AFP+PN++EMLD+LN ++YFS DLGNA YQVEL ++S TAF T+ DQFCF+ M F +A AP+TFQKLM++++G + W EA VYL++IL+FSK +E HK+R+N + +++ L+INPEKC F+ E++FL Sbjct: 157 AFPIPNVDEMLDSLNGAKYFSLTDLGNANYQVELDQESKLKTAFSTRQDQFCFNTMPFRIAVAPSTFQKLMTLIIGDMMWNEAQVYLDNILLFSKSIEEHKNRINKLFLQIRKSELKINPEKCKFVISELRFL 289 The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002807 ID=SMED30002807|Name=Retrovirus-related Pol polyprotein from transposon|organism=Schmidtea mediterranea sexual|type=transcript|length=833bpback to top protein sequence of SMED30002807-orf-1 >SMED30002807-orf-1 ID=SMED30002807-orf-1|Name=SMED30002807-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=135bp INNQEKVLCTIDAHFGGEINDSMRLKRTMEVLKIYRKSEIYNLIEKNIKAback to top protein sequence of SMED30002807-orf-2 >SMED30002807-orf-2 ID=SMED30002807-orf-2|Name=SMED30002807-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp MPNIEEMLDTLNESRYFSTFDLGNAYYQVELAEKSHNMTAFPTKADQFCFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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