SMED30002774
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002774 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 10
Alignments
SMED30002774 aligns in the following genomic locations:
Homology
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL2 (dynein light chain LC8-type 2 [Source:HGNC Symbol;Acc:HGNC:24596]) HSP 1 Score: 175.637 bits (444), Expect = 3.191e-57 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54 Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54 Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54 Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54 Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]) HSP 1 Score: 174.096 bits (440), Expect = 5.058e-57 Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]) HSP 1 Score: 174.096 bits (440), Expect = 5.058e-57 Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]) HSP 1 Score: 174.096 bits (440), Expect = 5.058e-57 Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-2 (Probable dynein light chain 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q21557]) HSP 1 Score: 88.9669 bits (219), Expect = 1.199e-23 Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MSE K +K DM D + I V +A YN++KD+AA++K+E DKK+ TWH I G+ FGS V++E HFI +V V+++K G Sbjct: 1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-5 (Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q65XS9]) HSP 1 Score: 88.9669 bits (219), Expect = 1.898e-22 Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = -3 Query: 81 AVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG*SRAALSKFH 362 A ++++ M M+QEA +A +++ Y++E DIA ++K FD++Y P WH I G++FGS+VT E FIYF +G +A +LFK+ R + + H Sbjct: 58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKTSLQRLPIMEKH 151
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070706) HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070704) HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0307065) HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070707) HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0077924) HSP 1 Score: 170.629 bits (431), Expect = 1.362e-55 Identity = 76/89 (85.39%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11]) HSP 1 Score: 174.481 bits (441), Expect = 5.622e-57 Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll2b (dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132]) HSP 1 Score: 174.481 bits (441), Expect = 5.622e-57 Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11]) HSP 1 Score: 174.481 bits (441), Expect = 5.622e-57 Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]) HSP 1 Score: 171.014 bits (432), Expect = 1.220e-55 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]) HSP 1 Score: 171.014 bits (432), Expect = 1.220e-55 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS++MQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: dynll2 (dynein light chain LC8-type 2 [Source:NCBI gene;Acc:100038056]) HSP 1 Score: 175.637 bits (444), Expect = 2.893e-57 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:NCBI gene;Acc:448652]) HSP 1 Score: 171.785 bits (434), Expect = 1.005e-55 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MSERKAVIKNADMS++MQQ+A+D A QA+EK+N+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSERKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: ENSXETT00000015639.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:48978690:48979872:1 gene:ENSXETG00000009974.1 transcript:ENSXETT00000015639.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.4774 bits (171), Expect = 9.154e-16 Identity = 32/89 (35.96%), Postives = 59/89 (66.29%), Query Frame = 3 Query: 111 TRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRH 377 RF+E+NC+L++++++E+L + + ++V ++ +P +++ DIGSN+ L ++ LH L +N LLHV HV IL++S S+RH Sbjct: 4 ARFKEENCNLAQIKVDEVLCFMCYIAAKVSANDAVPIYLL-------DIGSNVFLNIILLHCLCGTVNSILLHVFRHVSILDNSLSVRH 85
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: rnf181 (ring finger protein 181 [Source:Xenbase;Acc:XB-GENE-964051]) HSP 1 Score: 67.3958 bits (163), Expect = 1.054e-14 Identity = 32/101 (31.68%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 114 KAVYSTIHTLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAA-YIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAVLLFKS 410 +A Y +H+ + I++ DM ++M+ E +++ + A EK+ + AA IK+ DKK+ +WH ++G FG +THE K+ +Y F+ G +A+ ++K Sbjct: 11 EADYKRMHSFPL------IRHTDMPEEMRVETMELCVTACEKFASNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAICVWKC 105
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347]) HSP 1 Score: 175.637 bits (444), Expect = 2.191e-57 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347]) HSP 1 Score: 175.637 bits (444), Expect = 2.191e-57 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347]) HSP 1 Score: 175.637 bits (444), Expect = 2.191e-57 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]) HSP 1 Score: 166.777 bits (421), Expect = 5.444e-54 Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]) HSP 1 Score: 166.777 bits (421), Expect = 5.444e-54 Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q78P75|DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q9D0M5|DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q96FJ2|DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q3MHR3|DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56 Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q22799|DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.434e-56 Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. TrEMBL
Match: A0A5F8G993 (Dynein light chain OS=Monodelphis domestica OX=13616 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 3.825e-56 Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = -3 Query: 111 DCKAVYSTIHTLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 416 DC T ++ MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 73 DCTKAAPTSTSVAMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 174
BLAST of SMED30002774 vs. TrEMBL
Match: A0A5G2R8I6 (Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.086e-56 Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -3 Query: 111 TLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 386 ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 42 SVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 133
BLAST of SMED30002774 vs. TrEMBL
Match: A0A4X1SKB8 (Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.086e-56 Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -3 Query: 111 TLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 386 ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 42 SVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 133
BLAST of SMED30002774 vs. TrEMBL
Match: A0A1U7TEH9 (Dynein light chain OS=Tarsius syrichta OX=1868482 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 4.395e-56 Identity = 81/96 (84.38%), Postives = 90/96 (93.75%), Query Frame = -3 Query: 111 STIHTLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 398 + ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 9 CSFCSVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 104
BLAST of SMED30002774 vs. TrEMBL
Match: A0A452SXX3 (Dynein light chain OS=Ursus maritimus OX=29073 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 5.538e-56 Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -3 Query: 111 TLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 386 ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 45 SVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 136
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: ENSAMXT00000047143.1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528]) HSP 1 Score: 174.481 bits (441), Expect = 4.764e-57 Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: dynll2b (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528]) HSP 1 Score: 174.481 bits (441), Expect = 4.764e-57 Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]) HSP 1 Score: 154.066 bits (388), Expect = 1.176e-48 Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = -3 Query: 138 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQ 377 MS+RKAVIKNADMS++MQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQ Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: ENSAMXT00000013314.2 (pep primary_assembly:Astyanax_mexicanus-2.0:1:23335261:23337700:1 gene:ENSAMXG00000012944.2 transcript:ENSAMXT00000013314.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.8265 bits (242), Expect = 7.436e-27 Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 3 Query: 108 STRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRH 377 S RFE++ L++VE++E+LRLVGDVT+EVP N +PSWV+L + FD+ ++LLYVV LH L ++ LLHV+ HV +L+ SFS+ H Sbjct: 3 SARFEQEYGHLAQVEVDEVLRLVGDVTAEVPAHNAVPSWVVLL-AYLFDVRCDVLLYVVLLHCLCCTVDCVLLHVLRHVSVLDHSFSVSH 91
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: ENSAMXT00000025088.2 (pep primary_assembly:Astyanax_mexicanus-2.0:6:35277932:35282302:-1 gene:ENSAMXG00000024374.2 transcript:ENSAMXT00000025088.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.8037 bits (203), Expect = 8.882e-21 Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 3 Query: 111 TRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEF---FFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRHCQRMN 392 TR ++NC L++VE++E+L LVGDV +EVP + +P V+L V+ FD+GS++LL VVFL L N LLH++ HV I + +RH N Sbjct: 4 TRILKQNCHLAQVEVDEVLGLVGDVAAEVPAHDAVPGGVVLLVKLLTHLFDVGSDVLLDVVFLQSLSGTFNSILLHLLRHVRIFDHCLPVRHGSSEN 100
BLAST of SMED30002774 vs. Ensembl Yeast
Match: DYN2 (Cytoplasmic light chain dynein, microtubule motor protein; required for intracellular transport and cell division; involved in mitotic spindle positioning; forms complex with dynein intermediate chain Pac11p that promotes Dyn1p homodimerization, potentiates motor processivity; Dyn2p-Pac11p complex important for interaction of dynein motor complex with dynactin complex; acts as molecular glue to dimerize, stabilize Nup82-Nsp1-Nup159 complex module of cytoplasmic pore filaments [Source:SGD;Acc:S000002832]) HSP 1 Score: 100.908 bits (250), Expect = 4.945e-29 Identity = 40/87 (45.98%), Postives = 66/87 (75.86%), Query Frame = -3 Query: 114 SERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 374 ++ ++K +D++D ++++ + ++ A++KY +E+DIA +KK+ D KY TWH IVG+NFGSYVTHE HF+YFY+G +A L+FK+ Sbjct: 5 NKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 91
BLAST of SMED30002774 vs. Ensembl Nematostella
Match: EDO44582 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI5]) HSP 1 Score: 168.703 bits (426), Expect = 2.798e-55 Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MSERKAVIKNADM++DMQ +AI+ A QA+EK+N+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Nematostella
Match: EDO38557 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCP2]) HSP 1 Score: 73.559 bits (179), Expect = 1.361e-17 Identity = 32/84 (38.10%), Postives = 57/84 (67.86%), Query Frame = -3 Query: 114 VIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAA-YIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAVLLFKS 359 +I+ +DM+D+M+ EA+++ + A EK++ + AA IK+ DKK+ +WHA+VG FG +THE ++ +Y F+ G A+ ++K Sbjct: 26 LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGGTTAICIWKC 109
BLAST of SMED30002774 vs. Ensembl Medaka
Match: DYNLL2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101174042]) HSP 1 Score: 174.481 bits (441), Expect = 4.893e-57 Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS++KAVIKNADMSD+MQQ+A+D A+QAMEKYN+EKDIAAY+KKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDKKAVIKNADMSDEMQQDAVDCAMQAMEKYNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Medaka
Match: ENSORLT00000005747.2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101162462]) HSP 1 Score: 172.94 bits (437), Expect = 1.966e-56 Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS++MQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNADMSEEMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Medaka
Match: dynll1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101171417]) HSP 1 Score: 172.555 bits (436), Expect = 2.420e-56 Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MS+RKAVIKNADMS+DMQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Ensembl Medaka
Match: ENSORLT00000029240.1 (pep primary_assembly:ASM223467v1:13:10253300:10255192:1 gene:ENSORLG00000024686.1 transcript:ENSORLT00000029240.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-19 Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 3 Query: 117 FEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRHC 380 +E+N L++VE+N+ML LVGDV +EV ++ +P V+ + +GSN+LLYVVFLHGL ++ LLH++ HV +L+ F +RHC Sbjct: 5 LKEQNGYLAQVEVNKMLCLVGDVAAEVSANDAVPGRVV-LLVELLKLGSNVLLYVVFLHGLCGTVHGILLHLLGHVSVLDHRFPVRHC 91
BLAST of SMED30002774 vs. Ensembl Medaka
Match: ENSORLT00000028916.1 (pep primary_assembly:ASM223467v1:9:6243543:6247014:-1 gene:ENSORLG00000022487.1 transcript:ENSORLT00000028916.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 74.7146 bits (182), Expect = 9.719e-18 Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 111 TRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRH 377 +R E++N L++VE+NEML LV V +EVP +N +PS V+ VE ++ L VV L GL ++ LLHV+ HVGI + S+RH Sbjct: 4 SRLEQQNGHLTQVEVNEMLGLVSHVAAEVPPNNAVPSRVVFLVELL-----DVFLDVVLLQGLCGTLHGVLLHVLRHVGIFDHCLSVRH 87
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000017229.1 (SMESG000017229.1) HSP 1 Score: 186.037 bits (471), Expect = 9.278e-62 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG Sbjct: 1 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000003543.1 (SMESG000003543.1) HSP 1 Score: 172.555 bits (436), Expect = 1.880e-56 Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = -3 Query: 111 LTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 383 ++ S RKAVIKNADM+DDMQQEAI+ A QAMEK+N+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSDSSRKAVIKNADMADDMQQEAIECATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000024590.1 (SMESG000024590.1) HSP 1 Score: 168.318 bits (425), Expect = 9.622e-55 Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKN+DMS++MQQ+AI+ A+ AMEKYNVEKDIAAY+KKEFD+KYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MTDRKAVIKNSDMSEEMQQDAIECAVVAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000055712.1 (SMESG000055712.1) HSP 1 Score: 167.933 bits (424), Expect = 1.224e-54 Identity = 77/89 (86.52%), Postives = 87/89 (97.75%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS++MQQ+AI++A AMEKYNVEKDIAAY+KKEFD+KYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG Sbjct: 1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000055711.1 (SMESG000055711.1) HSP 1 Score: 167.933 bits (424), Expect = 1.224e-54 Identity = 77/89 (86.52%), Postives = 87/89 (97.75%), Query Frame = -3 Query: 111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377 M++RKAVIKNADMS++MQQ+AI++A AMEKYNVEKDIAAY+KKEFD+KYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG Sbjct: 1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89 The following BLAST results are available for this feature:
BLAST of SMED30002774 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30002774 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30002774 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30002774 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30002774 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of SMED30002774 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30002774 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30002774 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30002774 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30002774 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30002774 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of SMED30002774 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of SMED30002774 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30002774 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002774 ID=SMED30002774|Name=SMED30002774|organism=Schmidtea mediterranea sexual|type=transcript|length=514bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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