SMED30002774

Overview
NameSMED30002774
Smed IDSMED30002774
Length (bp)514
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30002774 (SMED30002774) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30002774 (SMED30002774) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30002774 (SMED30002774) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30002774 (SMED30002774) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002774

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30002774h1SMcG0018396 SmedASXL_006811SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30002774 dd_Smed_v4_613_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30002774 dd_Smed_v4_613_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30002774 dd_Smed_v4_613_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30002774 dd_Smed_v4_613_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30002774 dd_Smed_v4_613_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30002774 dd_Smed_v4_613_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30002774 dd_Smed_v6_613_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30002774 dd_Smed_v6_613_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynx progenitor cellSMED30002774 dd_Smed_v6_613_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30002774 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000932:79396..79957 -2557
Homology
[Close]
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL2 (dynein light chain LC8-type 2 [Source:HGNC Symbol;Acc:HGNC:24596])

HSP 1 Score: 175.637 bits (444), Expect = 3.191e-57
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54
Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54
Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54
Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 166.777 bits (421), Expect = 7.930e-54
Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 174.096 bits (440), Expect = 5.058e-57
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 174.096 bits (440), Expect = 5.058e-57
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 174.096 bits (440), Expect = 5.058e-57
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-2 (Probable dynein light chain 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q21557])

HSP 1 Score: 88.9669 bits (219), Expect = 1.199e-23
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MSE K  +K  DM D  +   I V  +A   YN++KD+AA++K+E DKK+  TWH I G+ FGS V++E  HFI     +V V+++K G
Sbjct:    1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Celegans
Match: dlc-5 (Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q65XS9])

HSP 1 Score: 88.9669 bits (219), Expect = 1.898e-22
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = -3 
Query:   81 AVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG*SRAALSKFH 362
            A ++++ M   M+QEA  +A +++  Y++E DIA ++K  FD++Y P WH I G++FGS+VT E   FIYF +G +A +LFK+   R  + + H
Sbjct:   58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKTSLQRLPIMEKH 151
[Close]
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070706)

HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070704)

HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0307065)

HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070707)

HSP 1 Score: 171.785 bits (434), Expect = 4.175e-56
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0077924)

HSP 1 Score: 170.629 bits (431), Expect = 1.362e-55
Identity = 76/89 (85.39%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A+D A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11])

HSP 1 Score: 174.481 bits (441), Expect = 5.622e-57
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll2b (dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132])

HSP 1 Score: 174.481 bits (441), Expect = 5.622e-57
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11])

HSP 1 Score: 174.481 bits (441), Expect = 5.622e-57
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 171.014 bits (432), Expect = 1.220e-55
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 171.014 bits (432), Expect = 1.220e-55
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS++MQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: dynll2 (dynein light chain LC8-type 2 [Source:NCBI gene;Acc:100038056])

HSP 1 Score: 175.637 bits (444), Expect = 2.893e-57
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:NCBI gene;Acc:448652])

HSP 1 Score: 171.785 bits (434), Expect = 1.005e-55
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MSERKAVIKNADMS++MQQ+A+D A QA+EK+N+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSERKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: ENSXETT00000015639.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:48978690:48979872:1 gene:ENSXETG00000009974.1 transcript:ENSXETT00000015639.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.4774 bits (171), Expect = 9.154e-16
Identity = 32/89 (35.96%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  111 TRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRH 377
             RF+E+NC+L++++++E+L  +  + ++V  ++ +P +++       DIGSN+ L ++ LH L   +N  LLHV  HV IL++S S+RH
Sbjct:    4 ARFKEENCNLAQIKVDEVLCFMCYIAAKVSANDAVPIYLL-------DIGSNVFLNIILLHCLCGTVNSILLHVFRHVSILDNSLSVRH 85
[Close]
BLAST of SMED30002774 vs. Ensembl Xenopus
Match: rnf181 (ring finger protein 181 [Source:Xenbase;Acc:XB-GENE-964051])

HSP 1 Score: 67.3958 bits (163), Expect = 1.054e-14
Identity = 32/101 (31.68%), Postives = 60/101 (59.41%), Query Frame = -3 
Query:  114 KAVYSTIHTLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAA-YIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAVLLFKS 410
            +A Y  +H+  +      I++ DM ++M+ E +++ + A EK+    + AA  IK+  DKK+  +WH ++G  FG  +THE K+ +Y F+ G +A+ ++K 
Sbjct:   11 EADYKRMHSFPL------IRHTDMPEEMRVETMELCVTACEKFASNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAICVWKC 105
[Close]
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 175.637 bits (444), Expect = 2.191e-57
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 175.637 bits (444), Expect = 2.191e-57
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 175.637 bits (444), Expect = 2.191e-57
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457])

HSP 1 Score: 166.777 bits (421), Expect = 5.444e-54
Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457])

HSP 1 Score: 166.777 bits (421), Expect = 5.444e-54
Identity = 74/89 (83.15%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMS++MQQ++++ A QA+EKYN+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q78P75|DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q9D0M5|DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q96FJ2|DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q3MHR3|DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.533e-56
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. UniProt/SwissProt
Match: sp|Q22799|DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.434e-56
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M +RKAVIKNADMSDDMQQ+AID A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. TrEMBL
Match: A0A5F8G993 (Dynein light chain OS=Monodelphis domestica OX=13616 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.825e-56
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = -3 
Query:  111 DCKAVYSTIHTLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 416
            DC     T  ++ MS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:   73 DCTKAAPTSTSVAMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 174
[Close]
BLAST of SMED30002774 vs. TrEMBL
Match: A0A5G2R8I6 (Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.086e-56
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  111 TLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 386
            ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:   42 SVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 133
[Close]
BLAST of SMED30002774 vs. TrEMBL
Match: A0A4X1SKB8 (Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.086e-56
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  111 TLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 386
            ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:   42 SVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 133
[Close]
BLAST of SMED30002774 vs. TrEMBL
Match: A0A1U7TEH9 (Dynein light chain OS=Tarsius syrichta OX=1868482 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.395e-56
Identity = 81/96 (84.38%), Postives = 90/96 (93.75%), Query Frame = -3 
Query:  111 STIHTLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 398
             +  ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    9 CSFCSVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 104
[Close]
BLAST of SMED30002774 vs. TrEMBL
Match: A0A452SXX3 (Dynein light chain OS=Ursus maritimus OX=29073 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.538e-56
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  111 TLTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 386
            ++TMS+RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:   45 SVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 136
[Close]
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: ENSAMXT00000047143.1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528])

HSP 1 Score: 174.481 bits (441), Expect = 4.764e-57
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: dynll2b (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528])

HSP 1 Score: 174.481 bits (441), Expect = 4.764e-57
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS+DMQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 154.066 bits (388), Expect = 1.176e-48
Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = -3 
Query:  138 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQ 377
            MS+RKAVIKNADMS++MQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: ENSAMXT00000013314.2 (pep primary_assembly:Astyanax_mexicanus-2.0:1:23335261:23337700:1 gene:ENSAMXG00000012944.2 transcript:ENSAMXT00000013314.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.8265 bits (242), Expect = 7.436e-27
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 3 
Query:  108 STRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRH 377
            S RFE++   L++VE++E+LRLVGDVT+EVP  N +PSWV+L   + FD+  ++LLYVV LH L   ++  LLHV+ HV +L+ SFS+ H
Sbjct:    3 SARFEQEYGHLAQVEVDEVLRLVGDVTAEVPAHNAVPSWVVLL-AYLFDVRCDVLLYVVLLHCLCCTVDCVLLHVLRHVSVLDHSFSVSH 91
[Close]
BLAST of SMED30002774 vs. Ensembl Cavefish
Match: ENSAMXT00000025088.2 (pep primary_assembly:Astyanax_mexicanus-2.0:6:35277932:35282302:-1 gene:ENSAMXG00000024374.2 transcript:ENSAMXT00000025088.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 82.8037 bits (203), Expect = 8.882e-21
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 3 
Query:  111 TRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEF---FFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRHCQRMN 392
            TR  ++NC L++VE++E+L LVGDV +EVP  + +P  V+L V+     FD+GS++LL VVFL  L    N  LLH++ HV I +    +RH    N
Sbjct:    4 TRILKQNCHLAQVEVDEVLGLVGDVAAEVPAHDAVPGGVVLLVKLLTHLFDVGSDVLLDVVFLQSLSGTFNSILLHLLRHVRIFDHCLPVRHGSSEN 100
[Close]
BLAST of SMED30002774 vs. Ensembl Yeast
Match: DYN2 (Cytoplasmic light chain dynein, microtubule motor protein; required for intracellular transport and cell division; involved in mitotic spindle positioning; forms complex with dynein intermediate chain Pac11p that promotes Dyn1p homodimerization, potentiates motor processivity; Dyn2p-Pac11p complex important for interaction of dynein motor complex with dynactin complex; acts as molecular glue to dimerize, stabilize Nup82-Nsp1-Nup159 complex module of cytoplasmic pore filaments [Source:SGD;Acc:S000002832])

HSP 1 Score: 100.908 bits (250), Expect = 4.945e-29
Identity = 40/87 (45.98%), Postives = 66/87 (75.86%), Query Frame = -3 
Query:  114 SERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 374
            ++   ++K +D++D ++++ + ++  A++KY +E+DIA  +KK+ D KY  TWH IVG+NFGSYVTHE  HF+YFY+G +A L+FK+
Sbjct:    5 NKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 91
[Close]
BLAST of SMED30002774 vs. Ensembl Nematostella
Match: EDO44582 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI5])

HSP 1 Score: 168.703 bits (426), Expect = 2.798e-55
Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MSERKAVIKNADM++DMQ +AI+ A QA+EK+N+EKDIAA+IKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Nematostella
Match: EDO38557 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCP2])

HSP 1 Score: 73.559 bits (179), Expect = 1.361e-17
Identity = 32/84 (38.10%), Postives = 57/84 (67.86%), Query Frame = -3 
Query:  114 VIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAA-YIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAVLLFKS 359
            +I+ +DM+D+M+ EA+++ + A EK++   + AA  IK+  DKK+  +WHA+VG  FG  +THE ++ +Y F+ G  A+ ++K 
Sbjct:   26 LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGGTTAICIWKC 109
[Close]
BLAST of SMED30002774 vs. Ensembl Medaka
Match: DYNLL2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101174042])

HSP 1 Score: 174.481 bits (441), Expect = 4.893e-57
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS++KAVIKNADMSD+MQQ+A+D A+QAMEKYN+EKDIAAY+KKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDKKAVIKNADMSDEMQQDAVDCAMQAMEKYNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Medaka
Match: ENSORLT00000005747.2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101162462])

HSP 1 Score: 172.94 bits (437), Expect = 1.966e-56
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS++MQQ+A+D A QAMEKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Medaka
Match: dynll1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101171417])

HSP 1 Score: 172.555 bits (436), Expect = 2.420e-56
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MS+RKAVIKNADMS+DMQQ+A++ A QA+EKYN+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Ensembl Medaka
Match: ENSORLT00000029240.1 (pep primary_assembly:ASM223467v1:13:10253300:10255192:1 gene:ENSORLG00000024686.1 transcript:ENSORLT00000029240.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-19
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 3 
Query:  117 FEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRHC 380
             +E+N  L++VE+N+ML LVGDV +EV  ++ +P  V+  +     +GSN+LLYVVFLHGL   ++  LLH++ HV +L+  F +RHC
Sbjct:    5 LKEQNGYLAQVEVNKMLCLVGDVAAEVSANDAVPGRVV-LLVELLKLGSNVLLYVVFLHGLCGTVHGILLHLLGHVSVLDHRFPVRHC 91
[Close]
BLAST of SMED30002774 vs. Ensembl Medaka
Match: ENSORLT00000028916.1 (pep primary_assembly:ASM223467v1:9:6243543:6247014:-1 gene:ENSORLG00000022487.1 transcript:ENSORLT00000028916.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 74.7146 bits (182), Expect = 9.719e-18
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3 
Query:  111 TRFEEKNCDLSEVEINEMLRLVGDVTSEVPTDNRMPSWVILFVEFFFDIGSNILLYVVFLHGLQSDINRFLLHVVAHVGILNDSFSLRH 377
            +R E++N  L++VE+NEML LV  V +EVP +N +PS V+  VE       ++ L VV L GL   ++  LLHV+ HVGI +   S+RH
Sbjct:    4 SRLEQQNGHLTQVEVNEMLGLVSHVAAEVPPNNAVPSRVVFLVELL-----DVFLDVVLLQGLCGTLHGVLLHVLRHVGIFDHCLSVRH 87
[Close]
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000017229.1 (SMESG000017229.1)

HSP 1 Score: 186.037 bits (471), Expect = 9.278e-62
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG
Sbjct:    1 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
[Close]
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000003543.1 (SMESG000003543.1)

HSP 1 Score: 172.555 bits (436), Expect = 1.880e-56
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = -3 
Query:  111 LTMSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 383
            ++ S RKAVIKNADM+DDMQQEAI+ A QAMEK+N+EKDIAAYIKKEFDKKYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSDSSRKAVIKNADMADDMQQEAIECATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
[Close]
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000024590.1 (SMESG000024590.1)

HSP 1 Score: 168.318 bits (425), Expect = 9.622e-55
Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKN+DMS++MQQ+AI+ A+ AMEKYNVEKDIAAY+KKEFD+KYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNSDMSEEMQQDAIECAVVAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000055712.1 (SMESG000055712.1)

HSP 1 Score: 167.933 bits (424), Expect = 1.224e-54
Identity = 77/89 (86.52%), Postives = 87/89 (97.75%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS++MQQ+AI++A  AMEKYNVEKDIAAY+KKEFD+KYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
[Close]
BLAST of SMED30002774 vs. Planmine SMEST
Match: SMESG000055711.1 (SMESG000055711.1)

HSP 1 Score: 167.933 bits (424), Expect = 1.224e-54
Identity = 77/89 (86.52%), Postives = 87/89 (97.75%), Query Frame = -3 
Query:  111 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 377
            M++RKAVIKNADMS++MQQ+AI++A  AMEKYNVEKDIAAY+KKEFD+KYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
The following BLAST results are available for this feature:
BLAST of SMED30002774 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
DYNLL23.191e-5789.89dynein light chain LC8-type 2 [Source:HGNC Symbol;... [more]
DYNLL17.930e-5483.15dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
DYNLL17.930e-5483.15dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
DYNLL17.930e-5483.15dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
DYNLL17.930e-5483.15dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
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BLAST of SMED30002774 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
dlc-15.058e-5789.89Dynein light chain 1, cytoplasmic [Source:UniProt... [more]
dlc-15.058e-5789.89Dynein light chain 1, cytoplasmic [Source:UniProt... [more]
dlc-15.058e-5789.89Dynein light chain 1, cytoplasmic [Source:UniProt... [more]
dlc-21.199e-2343.82Probable dynein light chain 2, cytoplasmic [Sourc... [more]
dlc-51.898e-2240.43Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q... [more]
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BLAST of SMED30002774 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ctp4.175e-5686.52gene:FBgn0011760 transcript:FBtr0070706[more]
ctp4.175e-5686.52gene:FBgn0011760 transcript:FBtr0070704[more]
ctp4.175e-5686.52gene:FBgn0011760 transcript:FBtr0307065[more]
ctp4.175e-5686.52gene:FBgn0011760 transcript:FBtr0070707[more]
Cdlc21.362e-5585.39gene:FBgn0026141 transcript:FBtr0077924[more]
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BLAST of SMED30002774 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
dynll2a5.622e-5788.76dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:... [more]
dynll2b5.622e-5788.76dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:... [more]
dynll2a5.622e-5788.76dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:... [more]
dynll11.220e-5586.52dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z... [more]
dynll11.220e-5586.52dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z... [more]
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BLAST of SMED30002774 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
dynll22.893e-5789.89dynein light chain LC8-type 2 [Source:NCBI gene;Ac... [more]
dynll11.005e-5586.52dynein light chain LC8-type 1 [Source:NCBI gene;Ac... [more]
ENSXETT00000015639.19.154e-1635.96pep primary_assembly:Xenopus_tropicalis_v9.1:2:489... [more]
rnf1811.054e-1431.68ring finger protein 181 [Source:Xenbase;Acc:XB-GEN... [more]
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BLAST of SMED30002774 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Dynll22.191e-5789.89dynein light chain LC8-type 2 [Source:MGI Symbol;A... [more]
Dynll22.191e-5789.89dynein light chain LC8-type 2 [Source:MGI Symbol;A... [more]
Dynll22.191e-5789.89dynein light chain LC8-type 2 [Source:MGI Symbol;A... [more]
Dynll15.444e-5483.15dynein light chain LC8-type 1 [Source:MGI Symbol;A... [more]
Dynll15.444e-5483.15dynein light chain LC8-type 1 [Source:MGI Symbol;A... [more]
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BLAST of SMED30002774 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q78P75|DYL2_RAT1.533e-5689.89Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
sp|Q9D0M5|DYL2_MOUSE1.533e-5689.89Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
sp|Q96FJ2|DYL2_HUMAN1.533e-5689.89Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
sp|Q3MHR3|DYL2_BOVIN1.533e-5689.89Dynein light chain 2, cytoplasmic OS=Bos taurus OX... [more]
sp|Q22799|DYL1_CAEEL6.434e-5689.89Dynein light chain 1, cytoplasmic OS=Caenorhabditi... [more]
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BLAST of SMED30002774 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5F8G9933.825e-5681.37Dynein light chain OS=Monodelphis domestica OX=136... [more]
A0A5G2R8I64.086e-5688.04Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2... [more]
A0A4X1SKB84.086e-5688.04Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2... [more]
A0A1U7TEH94.395e-5684.38Dynein light chain OS=Tarsius syrichta OX=1868482 ... [more]
A0A452SXX35.538e-5688.04Dynein light chain OS=Ursus maritimus OX=29073 GN=... [more]
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BLAST of SMED30002774 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000047143.14.764e-5788.76dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
dynll2b4.764e-5788.76dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
dynll11.176e-4886.25dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z... [more]
ENSAMXT00000013314.27.436e-2751.11pep primary_assembly:Astyanax_mexicanus-2.0:1:2333... [more]
ENSAMXT00000025088.28.882e-2143.30pep primary_assembly:Astyanax_mexicanus-2.0:6:3527... [more]
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BLAST of SMED30002774 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002774 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
DYN24.945e-2945.98Cytoplasmic light chain dynein, microtubule motor ... [more]
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BLAST of SMED30002774 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO445822.798e-5585.39Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO385571.361e-1738.10Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30002774 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
DYNLL24.893e-5787.64dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
ENSORLT00000005747.21.966e-5687.64dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
dynll12.420e-5687.64dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
ENSORLT00000029240.12.555e-1945.45pep primary_assembly:ASM223467v1:13:10253300:10255... [more]
ENSORLT00000028916.19.719e-1843.82pep primary_assembly:ASM223467v1:9:6243543:6247014... [more]
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BLAST of SMED30002774 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000017229.19.278e-62100.00SMESG000017229.1[more]
SMESG000003543.11.880e-5686.81SMESG000003543.1[more]
SMESG000024590.19.622e-5585.39SMESG000024590.1[more]
SMESG000055712.11.224e-5486.52SMESG000055712.1[more]
SMESG000055711.11.224e-5486.52SMESG000055711.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002774 ID=SMED30002774|Name=SMED30002774|organism=Schmidtea mediterranea sexual|type=transcript|length=514bp
AATGATTATAATAAAACAAAATATAATTTATTCGTGTAAATTCTAGATAT
GCATAAATTTATATAAAATGTTCAATTTTAATGAAACTTTGATAAGGCCG
CTCGTGATCAACCAGATTTGAAGAGAAGAACTGCGACTTGTCCGAGGTAG
AAATAAATGAAATGCTTCGTCTCGTGGGTGACGTAACTTCCGAAGTTCCT
ACCGACAATCGCATGCCAAGTTGGGTTATACTTTTTGTCGAATTCTTTTT
TGATATAGGCAGCAATATCCTTCTCTACGTTGTATTTCTCCATGGCTTGC
AGAGCGACATCAATCGCTTCTTGCTGCATGTCGTCGCTCATGTCGGCATT
CTTAATGACAGCTTTTCTCTCAGACATTGTCAGCGTATGAATAGTGCTAT
AGACGGCCTTGCAATCCGTTTATATACGCAATACGCAGCACCACCCTCCG
CACCACAACAGCTCAGCAAAACAAACAAATAACATTAGTGATTAGTAGAA
TAGTTAGCGCGAAT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000110pharynx progenitor cell
PLANA:0000418head
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR037177DLC_sf
IPR001372Dynein_light_chain_typ-1/2
IPR019763Dynein_light_1/2_CS
Vocabulary: biological process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: cellular component
TermDefinition
GO:0030286dynein complex
GO:0005875microtubule associated complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 1..88
e-value: 6.2E-60
score: 215.1
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 5..88
e-value: 1.0E-41
score: 141.1
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 1..89
IPR037177Dynein light chain superfamilyGENE3DG3DSA:3.30.740.10coord: 1..89
e-value: 1.7E-46
score: 158.2
IPR037177Dynein light chain superfamilySUPERFAMILYSSF54648DLCcoord: 1..89
NoneNo IPR availablePANTHERPTHR11886:SF62DYNEIN LIGHT CHAINcoord: 1..89
IPR019763Dynein light chain, type 1/2, conserved sitePROSITEPS01239DYNEIN_LIGHT_1coord: 55..69