Nucleoporin p58/p45

Overview
NameNucleoporin p58/p45
Smed IDSMED30002709
Length (bp)2398
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Nucleoporin p58/p45 (SMED30002709) t-SNE clustered cells

Violin plots show distribution of expression levels for Nucleoporin p58/p45 (SMED30002709) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Nucleoporin p58/p45 (SMED30002709) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Nucleoporin p58/p45 (SMED30002709) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002709

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30002709SMESG000077615.1 SmedASXL_014246SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Human
Match: NUP58 (nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261])

HSP 1 Score: 106.686 bits (265), Expect = 3.279e-23
Identity = 62/185 (33.51%), Postives = 110/185 (59.46%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  ANG+Q+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  240 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 422
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Human
Match: NUP58 (nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261])

HSP 1 Score: 106.686 bits (265), Expect = 3.304e-23
Identity = 62/185 (33.51%), Postives = 110/185 (59.46%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  ANG+Q+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  228 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 410
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Human
Match: NUP58 (nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261])

HSP 1 Score: 104.76 bits (260), Expect = 7.268e-23
Identity = 62/185 (33.51%), Postives = 110/185 (59.46%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  ANG+Q+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  240 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 422
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Human
Match: NUP58 (nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261])

HSP 1 Score: 103.99 bits (258), Expect = 1.400e-22
Identity = 62/185 (33.51%), Postives = 110/185 (59.46%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  ANG+Q+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  240 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 422
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Human
Match: NUP58 (nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261])

HSP 1 Score: 102.449 bits (254), Expect = 3.119e-22
Identity = 62/185 (33.51%), Postives = 110/185 (59.46%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  ANG+Q+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  187 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 369
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Fly
Match: Nup58 (gene:FBgn0038722 transcript:FBtr0083781)

HSP 1 Score: 78.5666 bits (192), Expect = 1.007e-14
Identity = 48/186 (25.81%), Postives = 99/186 (53.23%), Query Frame = 2 
Query: 1400 QVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNS-SNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEY--LRRYK 1948
            ++K+T +  E+ +TV+  K ++ +QK +  +I +++  T+  T V  E   L+ ++ ++A  ++    Q   ++ +  K   ++++AQ + +    L  + N    YF   V + E     + Q+I + E   ++ SN  +++  DL    R++++ FI LA +L+ VH+RV+  K  Y  LRRY+
Sbjct:  308 KIKETQVPDEIIKTVDGLKAYIKQQKTISSDIGRTS--TSKFTNVSHEITNLKWALQNMATLVEGSNQQIRLMRQETVKAIQSLEMAQRTQDTPAGLQFENNAPFQYFQCLVAKYEQDLIAFRQQIALTERHMHAISNPQSISPDDLKRGFRQLNESFISLAGRLHEVHQRVEEHKEHYLNLRRYR 491
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Zebrafish
Match: nup58 (nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-2326])

HSP 1 Score: 107.457 bits (267), Expect = 9.612e-24
Identity = 71/213 (33.33%), Postives = 119/213 (55.87%), Query Frame = 2 
Query: 1319 GLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQA 1954
            GLGG   S S +    K ++ +    K +KD +L   + + V++F++FV EQK+++EEI  S   +  + +V+E+ ++LRQ +S  A+GLQ+  +  +KLK + S+E  N  IA  + +    L  +    S YF   V + E +   Y Q+IE +E  +    + S +T +DL   ++++   F+ LAAQL  VHE VK  K +YL  Y++A
Sbjct:  219 GLGGVDFSTSSEKNTDKLSSTRPEDSKALKDENLPAPICQDVDNFQKFVKEQKQVQEEI--SRMSSKPILKVQEDIKMLRQLLSICASGLQRNSLSIDKLKLETSQELKNADIALRTQKTPPGLQHENTAPSDYFRALVEQFEVQLQQYRQQIEELENHLTTQGSGSHITPQDLSMAMQKLYQTFVALAAQLQGVHENVKTLKHQYL-GYRRA 428
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Zebrafish
Match: nup58 (nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-2326])

HSP 1 Score: 103.99 bits (258), Expect = 4.538e-23
Identity = 69/207 (33.33%), Postives = 115/207 (55.56%), Query Frame = 2 
Query: 1319 GLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYL 1936
            GLGG   S S +    K ++ +    K +KD +L   + + V++F++FV EQK+++EEI  S   +  + +V+E+ ++LRQ +S  A+GLQ+  +  +KLK + S+E  N  IA  + +    L  +    S YF   V + E +   Y Q+IE +E  +    + S +T +DL   ++++   F+ LAAQL  VHE VK  K +YL
Sbjct:  219 GLGGVDFSTSSEKNTDKLSSTRPEDSKALKDENLPAPICQDVDNFQKFVKEQKQVQEEI--SRMSSKPILKVQEDIKMLRQLLSICASGLQRNSLSIDKLKLETSQELKNADIALRTQKTPPGLQHENTAPSDYFRALVEQFEVQLQQYRQQIEELENHLTTQGSGSHITPQDLSMAMQKLYQTFVALAAQLQGVHENVKTLKHQYL 423
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Xenopus
Match: nup58 (nucleoporin 58kDa [Source:NCBI gene;Acc:595038])

HSP 1 Score: 109.768 bits (273), Expect = 2.776e-24
Identity = 86/268 (32.09%), Postives = 139/268 (51.87%), Query Frame = 2 
Query: 1310 AKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNK-NSALKFSDNVGSSPFDN 2107
            A +GLGG     S    + K    +    K  KD +L   L + VE+F++FV EQK+++EEI  S   +  M +V+E+ + LRQ +S  ++GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   SN S L+ +DL   ++++   F+ LAAQL AV+E VKM K +YL   K          A  G   D FE+       +R+ + K  SA + +   G +PF N
Sbjct:  244 ANEGLGGLDFGSSSDKKSDKTGT-RPEDSKAFKDDNLPQLLCQDVENFQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALRQLLSVASSGLQRNSLAIDKLKIETAQELKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNSSHLSPQDLSLAMQKLYQTFVALAAQLQAVNENVKMLKEQYLGYRK----------AYLGDSADVFEA-------RRAEAKKWQSAPRVT--TGPTPFSN 489
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Xenopus
Match: nup58 (nucleoporin 58kDa [Source:NCBI gene;Acc:595038])

HSP 1 Score: 108.612 bits (270), Expect = 3.766e-24
Identity = 86/268 (32.09%), Postives = 139/268 (51.87%), Query Frame = 2 
Query: 1310 AKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNK-NSALKFSDNVGSSPFDN 2107
            A +GLGG     S    + K    +    K  KD +L   L + VE+F++FV EQK+++EEI  S   +  M +V+E+ + LRQ +S  ++GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   SN S L+ +DL   ++++   F+ LAAQL AV+E VKM K +YL   K          A  G   D FE+       +R+ + K  SA + +   G +PF N
Sbjct:  249 ANEGLGGLDFGSSSDKKSDKTGT-RPEDSKAFKDDNLPQLLCQDVENFQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALRQLLSVASSGLQRNSLAIDKLKIETAQELKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNSSHLSPQDLSLAMQKLYQTFVALAAQLQAVNENVKMLKEQYLGYRK----------AYLGDSADVFEA-------RRAEAKKWQSAPRVT--TGPTPFSN 494
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Xenopus
Match: nup58 (nucleoporin 58kDa [Source:NCBI gene;Acc:595038])

HSP 1 Score: 109.768 bits (273), Expect = 3.790e-24
Identity = 86/268 (32.09%), Postives = 139/268 (51.87%), Query Frame = 2 
Query: 1310 AKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNK-NSALKFSDNVGSSPFDN 2107
            A +GLGG     S    + K    +    K  KD +L   L + VE+F++FV EQK+++EEI  S   +  M +V+E+ + LRQ +S  ++GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   SN S L+ +DL   ++++   F+ LAAQL AV+E VKM K +YL   K          A  G   D FE+       +R+ + K  SA + +   G +PF N
Sbjct:  269 ANEGLGGLDFGSSSDKKSDKTGT-RPEDSKAFKDDNLPQLLCQDVENFQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALRQLLSVASSGLQRNSLAIDKLKIETAQELKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNSSHLSPQDLSLAMQKLYQTFVALAAQLQAVNENVKMLKEQYLGYRK----------AYLGDSADVFEA-------RRAEAKKWQSAPRVT--TGPTPFSN 514
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Xenopus
Match: nup58 (nucleoporin 58kDa [Source:NCBI gene;Acc:595038])

HSP 1 Score: 108.997 bits (271), Expect = 5.539e-24
Identity = 86/268 (32.09%), Postives = 139/268 (51.87%), Query Frame = 2 
Query: 1310 AKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNK-NSALKFSDNVGSSPFDN 2107
            A +GLGG     S    + K    +    K  KD +L   L + VE+F++FV EQK+++EEI  S   +  M +V+E+ + LRQ +S  ++GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   SN S L+ +DL   ++++   F+ LAAQL AV+E VKM K +YL   K          A  G   D FE+       +R+ + K  SA + +   G +PF N
Sbjct:  269 ANEGLGGLDFGSSSDKKSDKTGT-RPEDSKAFKDDNLPQLLCQDVENFQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALRQLLSVASSGLQRNSLAIDKLKIETAQELKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNSSHLSPQDLSLAMQKLYQTFVALAAQLQAVNENVKMLKEQYLGYRK----------AYLGDSADVFEA-------RRAEAKKWQSAPRVT--TGPTPFSN 514
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Xenopus
Match: nup58 (nucleoporin 58kDa [Source:NCBI gene;Acc:595038])

HSP 1 Score: 101.679 bits (252), Expect = 1.025e-22
Identity = 78/236 (33.05%), Postives = 127/236 (53.81%), Query Frame = 2 
Query: 1406 KDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNK-NSALKFSDNVGSSPFDN 2107
            KD +L   L + VE+F++FV EQK+++EEI  S   +  M +V+E+ + LRQ +S  ++GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   SN S L+ +DL   ++++   F+ LAAQL AV+E VKM K +YL   K          A  G   D FE+       +R+ + K  SA + +   G +PF N
Sbjct:    2 KDDNLPQLLCQDVENFQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALRQLLSVASSGLQRNSLAIDKLKIETAQELKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNSSHLSPQDLSLAMQKLYQTFVALAAQLQAVNENVKMLKEQYLGYRK----------AYLGDSADVFEA-------RRAEAKKWQSAPRVT--TGPTPFSN 216
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Mouse
Match: Gm49336 (predicted gene, 49336 [Source:MGI Symbol;Acc:MGI:6121524])

HSP 1 Score: 103.605 bits (257), Expect = 1.888e-22
Identity = 61/185 (32.97%), Postives = 109/185 (58.92%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  A+GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   ++ S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  228 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQQIEELENHLATQASNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 410
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Mouse
Match: Nupl1 (nucleoporin like 1 [Source:MGI Symbol;Acc:MGI:1919094])

HSP 1 Score: 103.219 bits (256), Expect = 2.107e-22
Identity = 61/185 (32.97%), Postives = 109/185 (58.92%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  A+GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   ++ S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  228 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQQIEELENHLATQASNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 410
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Mouse
Match: Gm49336 (predicted gene, 49336 [Source:MGI Symbol;Acc:MGI:6121524])

HSP 1 Score: 102.834 bits (255), Expect = 2.268e-22
Identity = 61/185 (32.97%), Postives = 109/185 (58.92%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  A+GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   ++ S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  228 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQQIEELENHLATQASNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 410
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Mouse
Match: Gm49336 (predicted gene, 49336 [Source:MGI Symbol;Acc:MGI:6121524])

HSP 1 Score: 102.834 bits (255), Expect = 3.228e-22
Identity = 68/212 (32.08%), Postives = 119/212 (56.13%), Query Frame = 2 
Query: 1316 KGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            +GLGG   S S    + K    +    K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  A+GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   ++ S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  202 EGLGGIDFSTSSDKKSDKTGT-RPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQQIEELENHLATQASNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 410
[Close]
BLAST of Nucleoporin p58/p45 vs. UniProt/SwissProt
Match: sp|P70581|NUP58_RAT (Nucleoporin p58/p45 OS=Rattus norvegicus OX=10116 GN=Nup58 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.683e-23
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 2 
Query: 1316 KGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFES 2014
            +GLGG   S S    + K    +    K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  A+GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K        FL   G  GD FE+
Sbjct:  200 EGLGGIDFSTSSDKKSDKTGT-RPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKM-------FL---GDAGDVFEA 420
[Close]
BLAST of Nucleoporin p58/p45 vs. UniProt/SwissProt
Match: sp|Q9BVL2|NUP58_HUMAN (Nucleoporin p58/p45 OS=Homo sapiens OX=9606 GN=NUP58 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.575e-22
Identity = 62/185 (33.51%), Postives = 110/185 (59.46%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  ANG+Q+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E+ +   +N S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  240 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 422
[Close]
BLAST of Nucleoporin p58/p45 vs. UniProt/SwissProt
Match: sp|Q8R332|NUP58_MOUSE (Nucleoporin p58/p45 OS=Mus musculus OX=10090 GN=Nup58 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.321e-21
Identity = 61/185 (32.97%), Postives = 109/185 (58.92%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK 1948
            K +KD +L P + + VE+ ++FV EQK+++EEI  S   +  M +V+E+ + L+Q +S  A+GLQ+  +  +KLK + ++E  N +IA  + +    L  +    + YF   V++ E +   Y Q+IE +E  +   ++ S +T +DL   ++++   F+ LAAQL ++HE VK+ K +YL   K
Sbjct:  228 KALKDENLPPVICQDVENLQKFVKEQKQVQEEI--SRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQQIEELENHLATQASNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRK 410
[Close]
BLAST of Nucleoporin p58/p45 vs. UniProt/SwissProt
Match: sp|Q9VDV3|NUP58_DROME (Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.010e-13
Identity = 48/186 (25.81%), Postives = 99/186 (53.23%), Query Frame = 2 
Query: 1400 QVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNS-SNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEY--LRRYK 1948
            ++K+T +  E+ +TV+  K ++ +QK +  +I +++  T+  T V  E   L+ ++ ++A  ++    Q   ++ +  K   ++++AQ + +    L  + N    YF   V + E     + Q+I + E   ++ SN  +++  DL    R++++ FI LA +L+ VH+RV+  K  Y  LRRY+
Sbjct:  308 KIKETQVPDEIIKTVDGLKAYIKQQKTISSDIGRTS--TSKFTNVSHEITNLKWALQNMATLVEGSNQQIRLMRQETVKAIQSLEMAQRTQDTPAGLQFENNAPFQYFQCLVAKYEQDLIAFRQQIALTERHMHAISNPQSISPDDLKRGFRQLNESFISLAGRLHEVHQRVEEHKEHYLNLRRYR 491
[Close]
BLAST of Nucleoporin p58/p45 vs. TrEMBL
Match: A0A183AEJ2 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS5377 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.166e-39
Identity = 82/206 (39.81%), Postives = 130/206 (63.11%), Query Frame = 2 
Query: 1373 AAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYK-QANNHQNPFLAIE 1987
            A  K S  +Q KD  L PEL  TV++FK F+ EQKKL+EE++  N     + ++++E   + Q +S V  GL++I  Q  +LK D+ KE++N+ I Q +++    +  + N T  YF NK+ E + R   Y QE+EV+E + +S N+  L+ +DLV ++R+MD+EFI LAAQL+  +E+VK  KT YLR ++  + + +NPF  +E
Sbjct:   11 ALAKQSQSQQPKDQPLCPELVATVDNFKTFLAEQKKLREELV--NLSQQPLVKLKDELSCMMQQVSAVTAGLRRIAAQRERLKEDVRKEETNMGIVQRNADCGPVVQYENNATIEYFLNKLVEFDTRMRSYKQELEVIEEIISSQNRCCLSPKDLVGLLRQMDNEFICLAAQLHTAYEKVKGLKTRYLRSFRTTSGDSRNPFSEVE 214
[Close]
BLAST of Nucleoporin p58/p45 vs. TrEMBL
Match: A0A504YGY5 (Methionine aminopeptidase 1D mitochondrial OS=Fasciola gigantica OX=46835 GN=FGIG_00324 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.965e-37
Identity = 78/198 (39.39%), Postives = 128/198 (64.65%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQAN-NHQNPFLAIE 1987
            +Q KD  L PEL  TV++F+ F++EQKKL+EE++  N     + ++++E   + Q +S V  GL++I  Q ++L  D+ KE++N+ I Q ++++   +  + N T  YF +K  E + R   Y QE+EV+E   +S N+S L+ +DLV ++R+MD+EFI LAAQLY  +E++K+ KT YLR  +  N + +NPF  +E
Sbjct:   33 QQPKDQLLCPELIATVDNFRAFLSEQKKLREELV--NLSQQPLVKLKDELSCIVQQVSAVTAGLRRITAQRDRLSEDVKKEEANMGIVQRNADSGLVMQYENNATIEYFLSKAVEFDTRMCSYKQELEVIEENISSQNRSCLSPKDLVSLLRQMDNEFICLAAQLYTAYEQIKVLKTHYLRNLRSNNSDSRNPFSEVE 228
[Close]
BLAST of Nucleoporin p58/p45 vs. TrEMBL
Match: A0A2H1CJX0 (Methionine aminopeptidase 1D mitochondrial OS=Fasciola hepatica OX=6192 GN=D915_003454 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.193e-37
Identity = 78/199 (39.20%), Postives = 128/199 (64.32%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQAN-NHQNPFLAIEG 1990
            +Q KD  L PEL  TV++F+ F++EQKKL+EE++  N     + ++++E   + Q +S V  GL++I  Q ++L  D+ KE++N+ I Q ++++   +  + N T  YF +K  E + R   Y QE+EV+E   +S N+S L+ +DLV ++R+MD+EFI LAAQLY  +E++K+ KT YLR  +  N + +NPF  +E 
Sbjct:   19 QQPKDQLLCPELIATVDNFRAFLSEQKKLREELV--NLSQQPLVKLKDELSCIVQQVSAVTAGLRRITAQRDRLSEDVKKEEANMGIVQRNADSGLVMQYENNATIEYFLSKAVEFDTRMCSYKQELEVIEENISSQNRSCLSPKDLVSLLRQMDNEFICLAAQLYTAYEQIKVLKTHYLRNLRSNNSDSRNPFSEVEA 215
[Close]
BLAST of Nucleoporin p58/p45 vs. TrEMBL
Match: A0A4V3SFF7 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_004338 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.107e-33
Identity = 76/215 (35.35%), Postives = 130/215 (60.47%), Query Frame = 2 
Query: 1346 SLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQ-ANNHQNPFLAIE 1987
            S+  +       K S   Q KD  +  E+  +VE FK F+TEQKK++EE+I  N     + R++++   + Q +S V +GL++I  Q + LK ++ KE+ ++ IAQ +SE   +L ++ +  + YF NK+ E + R   Y QE+EV+E   +S  +  L+ ++LV ++R+MD+EFI LAAQL+  +E+VK+ K  YLR  +  + + ++PF  +E
Sbjct:    2 SITGLGGPTLGTKYSHAPQSKDLPVCQEIITSVEQFKHFLTEQKKIREELI--NLSQQPLFRLKDDVTSMVQQVSAVISGLRRIVAQHDILKGEVLKEEKHVGIAQRNSEIGVSLQMENSAITEYFLNKLLEFDTRVRSYKQELEVLEGGISSQTRPCLSPKELVALLRQMDNEFICLAAQLHTTYEQVKVLKARYLRNMRALSGDTRSPFAEVE 214
[Close]
BLAST of Nucleoporin p58/p45 vs. TrEMBL
Match: A0A4S2LWL6 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_004338 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.255e-33
Identity = 76/215 (35.35%), Postives = 130/215 (60.47%), Query Frame = 2 
Query: 1346 SLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQ-ANNHQNPFLAIE 1987
            S+  +       K S   Q KD  +  E+  +VE FK F+TEQKK++EE+I  N     + R++++   + Q +S V +GL++I  Q + LK ++ KE+ ++ IAQ +SE   +L ++ +  + YF NK+ E + R   Y QE+EV+E   +S  +  L+ ++LV ++R+MD+EFI LAAQL+  +E+VK+ K  YLR  +  + + ++PF  +E
Sbjct:    2 SITGLGGPTLGTKYSHAPQSKDLPVCQEIITSVEQFKHFLTEQKKIREELI--NLSQQPLFRLKDDVTSMVQQVSAVISGLRRIVAQHDILKGEVLKEEKHVGIAQRNSEIGVSLQMENSAITEYFLNKLLEFDTRVRSYKQELEVLEGGISSQTRPCLSPKELVALLRQMDNEFICLAAQLHTTYEQVKVLKARYLRNMRALSGDTRSPFAEVE 214
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Cavefish
Match: nup58 (nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-2326])

HSP 1 Score: 108.227 bits (269), Expect = 4.440e-24
Identity = 80/263 (30.42%), Postives = 142/263 (53.99%), Query Frame = 2 
Query: 1319 GLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSA-LTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNK-NSALKFSDNVGSSPF 2101
            GLGG   S S ++ + K ++ +    K +KD +L   + + V++F++FV EQK+++EEI  S   +  M +V+++ + L+Q +S  A+GLQ+  +   KLK + ++E  N  +A  + +    L  +    S YF   V + E +   Y Q+IE +E+   +   SA +T +DL + ++++   F+ LAAQL AVHE VK  K +YL       N++  +L          E  +++ ++KR+ S K  SA + +   G +PF
Sbjct:  193 GLGGVDFSTSSENKSDKSSSARPEDSKALKDENLPAPICQDVDNFQKFVKEQKQVQEEI--SRMSSKAMVKVQDDIKSLKQLLSVSASGLQRNALSIEKLKMETAQELKNADVALRTQKTPPGLQHENTAPSDYFRGLVEQFEVQLQQYRQQIEELENHLTTQGSSAHITPQDLSQAMQKLYQTFVALAAQLQAVHENVKTLKHQYL-------NYRRAYL----------EDSTDVFELKRTASRKLQSAPRVT--TGPAPF 434
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Sea Lamprey
Match: nup58 (nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-2326])

HSP 1 Score: 114.775 bits (286), Expect = 9.038e-28
Identity = 75/209 (35.89%), Postives = 121/209 (57.89%), Query Frame = 2 
Query: 1316 KGLGGSPI-SDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSA-LTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYL 1936
            KGLGG    S S K      A       K +K   L PE+ + VE+F++FV +Q++++EEI +S+  + +M RV+EE++ LRQ +S VA GLQ+  +  +KL+++ ++E  N++IA  + E  + L  +    + YF     + E +  LY ++IE +E+   S   SA +T +DL   ++R+ + FI LAA L  VHE VK  K +YL
Sbjct:  112 KGLGGVDFTSSSDKKDDRLSAGGGPGDSKTLKSQVLPPEICKDVENFQKFVKDQRQVQEEIGRSS--SKVMLRVQEETKALRQMLSLVAAGLQRSTLAVDKLRAEAAQELKNVEIAVRTRETPDGLQHENTAPTEYFRRLAEQFEVQMQLYRRQIEEMENHITSQATSAHMTPQDLSLAMQRLYETFIALAAHLQTVHETVKRQKEQYL 318
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Nematostella
Match: EDO34689 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNP1])

HSP 1 Score: 58.5362 bits (140), Expect = 3.394e-10
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 2 
Query: 1652 KIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQA 1954
            +I Q +S+    L  +      YF   V   E R  +Y ++I+++ES +C+ S    LT +DL +++  + + FI LAA+L+++HE VK+ K  +L  Y++A
Sbjct:    1 EICQRTSDIPPALQHENTLPQEYFHRLVESFEERMQVYKKQIDIMESHLCSLSQGHTLTPQDLSQVMHHVHETFIALAAELHSIHEAVKVIKEHFL-NYRKA 101
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Medaka
Match: nup58 (nucleoporin 58 [Source:NCBI gene;Acc:101165014])

HSP 1 Score: 104.76 bits (260), Expect = 6.012e-23
Identity = 67/206 (32.52%), Postives = 121/206 (58.74%), Query Frame = 2 
Query: 1340 SDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVES-MCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQA 1954
            SD+L   + +D+       K +KD +L P + + VE+F++FV EQK+++EEI  S   +  +++V+++ + L+Q +S  A+GLQ+  +  +KLK + ++E  N  IA  + +    L  +    S YF + V + E +   Y Q+IE +E+ +   S+ S +T +DL   ++++   F+  AAQL +VHE VK+ K +YL  Y++A
Sbjct:  231 SDTLSGSSEQDS-------KVLKDENLPPVICQDVENFQKFVKEQKQVQEEI--SRMSSKAISKVQDDIKNLKQLLSVNASGLQRQALAIDKLKQETAQELKNADIALRTQKTPPGLQHENTAPSDYFRSLVEQFEVQLQQYRQQIEELENHLTTQSSGSHITPQDLTMAMQKLYQTFVAQAAQLQSVHENVKILKQQYL-SYRRA 426
[Close]
BLAST of Nucleoporin p58/p45 vs. Ensembl Medaka
Match: nup58 (nucleoporin 58 [Source:NCBI gene;Acc:101165014])

HSP 1 Score: 103.605 bits (257), Expect = 1.267e-22
Identity = 63/187 (33.69%), Postives = 112/187 (59.89%), Query Frame = 2 
Query: 1397 KQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVE-SMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQA 1954
            K +KD +L P + + VE+F++FV EQK+++EEI  S   +  +++V+++ + L+Q +S  A+GLQ+  +  +KLK + ++E  N  IA  + +    L  +    S YF + V + E +   Y Q+IE +E  +   S+ S +T +DL   ++++   F+  AAQL +VHE VK+ K +YL  Y++A
Sbjct:  218 KVLKDENLPPVICQDVENFQKFVKEQKQVQEEI--SRMSSKAISKVQDDIKNLKQLLSVNASGLQRQALAIDKLKQETAQELKNADIALRTQKTPPGLQHENTAPSDYFRSLVEQFEVQLQQYRQQIEELENHLTTQSSGSHITPQDLTMAMQKLYQTFVAQAAQLQSVHENVKILKQQYL-SYRRA 401
[Close]
BLAST of Nucleoporin p58/p45 vs. Planmine SMEST
Match: SMESG000077615.1 (SMESG000077615.1)

HSP 1 Score: 1221.84 bits (3160), Expect = 0.000e+0
Identity = 731/739 (98.92%), Postives = 732/739 (99.05%), Query Frame = 2 
Query:  122 VFGTPNNALSQPTPFSLGLNTQNTALGANNSLFTTPTQSSLFGGQSNQSSTGFAISGNSNSSSMFGPTSNNSFGNNTGYIGSNNPMLXXXXXXXXXXXXXXXFENKTMFSTQNLASSQGTGFATNSPQTGFNIGNQNTVSSNFSFGTMGNSSSSTVAPQSLFGLDSTTKSTFGSVSTNLTTMFNTPSSSSNTFGVSNNAGFSQLGTTFSNPGLXXXXXXXXXXXXXXLANSIVSQSGSPFGIGSSNQTSNTFSFAAPQQISTISSNLIGTTQSSFGFQSITPTQNTSSIAPVGGQNTFSFASPASILTTNASAPISNFCVSQANIYTGLPLTSTSFNSNSLINKTTASTFPLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKLQINXXXXXXXXXXXAKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNKNSALKFSDNVGSSPFDNNCYINQLNSFSIPKTVNNAQKPSIFGINNNNPSMNPSAVTAXXXXXXXXXXXXXXXLNKPPPTNLFLSDTVSNKKRR 2338
            VFGTPNNALSQP  FSLGLNTQNTALGANNS FTTPTQSSLFGGQSNQSSTGFAISGNSNSSSMFGPTSNNSFGNNTGYIGSNNPMLTNSNISSTPTSNNSIFENKTMFSTQNLAS+QGTGFATNSPQTGFNIGNQNTVSSNFSFGTMGNSSSSTVAPQSLFGLDS TKSTFGSVSTNLTTMFNTPS   NTFGVSNNAGFSQLGTTFSNPGLNNNTFPNTNSTTSTLANSIVSQSGSPFGIGSSNQTSNTFSFAAPQQISTISSNLIGTTQSSFGFQSITPTQNTSSIAPVGGQNTFSFASPASILTTNASAPISNFCVSQANIYTGLPLTSTSFNSNSLINKTTASTFPLNLSQSTTSTISQSSLSVTSSGLGGVASSKLQINSASPLISSSVSAKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNKNSALKFSDNVGSSPFDNNCYINQLNSFSIPKTVNNAQKPSIFGINNNNPSMNPSAVTATTIPFSFSTTNSSFTLNKPPPTNLFLSDTVSNKKRR
Sbjct:   17 VFGTPNNALSQPKAFSLGLNTQNTALGANNSPFTTPTQSSLFGGQSNQSSTGFAISGNSNSSSMFGPTSNNSFGNNTGYIGSNNPMLTNSNISSTPTSNNSIFENKTMFSTQNLASNQGTGFATNSPQTGFNIGNQNTVSSNFSFGTMGNSSSSTVAPQSLFGLDSNTKSTFGSVSTNLTTMFNTPS---NTFGVSNNAGFSQLGTTFSNPGLNNNTFPNTNSTTSTLANSIVSQSGSPFGIGSSNQTSNTFSFAAPQQISTISSNLIGTTQSSFGFQSITPTQNTSSIAPVGGQNTFSFASPASILTTNASAPISNFCVSQANIYTGLPLTSTSFNSNSLINKTTASTFPLNLSQSTTSTISQSSLSVTSSGLGGVASSKLQINSASPLISSSVSAKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLLPELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISDVANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYFGNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFIGLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISELNDVKRSNSNKNSALKFSDNVGSSPFDNNCYINQLNSFSIPKTVNNAQKPSIFGINNNNPSMNPSAVTATTIPFSFSTTNSSFTLNKPPPTNLFLSDTVSNKKRR 752
The following BLAST results are available for this feature:
BLAST of Nucleoporin p58/p45 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NUP583.279e-2333.51nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261][more]
NUP583.304e-2333.51nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261][more]
NUP587.268e-2333.51nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261][more]
NUP581.400e-2233.51nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261][more]
NUP583.119e-2233.51nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261][more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Nucleoporin p58/p45 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Nup581.007e-1425.81gene:FBgn0038722 transcript:FBtr0083781[more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
nup589.612e-2433.33nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-23... [more]
nup584.538e-2333.33nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-23... [more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
nup582.776e-2432.09nucleoporin 58kDa [Source:NCBI gene;Acc:595038][more]
nup583.766e-2432.09nucleoporin 58kDa [Source:NCBI gene;Acc:595038][more]
nup583.790e-2432.09nucleoporin 58kDa [Source:NCBI gene;Acc:595038][more]
nup585.539e-2432.09nucleoporin 58kDa [Source:NCBI gene;Acc:595038][more]
nup581.025e-2233.05nucleoporin 58kDa [Source:NCBI gene;Acc:595038][more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Gm493361.888e-2232.97predicted gene, 49336 [Source:MGI Symbol;Acc:MGI:6... [more]
Nupl12.107e-2232.97nucleoporin like 1 [Source:MGI Symbol;Acc:MGI:1919... [more]
Gm493362.268e-2232.97predicted gene, 49336 [Source:MGI Symbol;Acc:MGI:6... [more]
Gm493363.228e-2232.08predicted gene, 49336 [Source:MGI Symbol;Acc:MGI:6... [more]
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BLAST of Nucleoporin p58/p45 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|P70581|NUP58_RAT3.683e-2332.48Nucleoporin p58/p45 OS=Rattus norvegicus OX=10116 ... [more]
sp|Q9BVL2|NUP58_HUMAN1.575e-2233.51Nucleoporin p58/p45 OS=Homo sapiens OX=9606 GN=NUP... [more]
sp|Q8R332|NUP58_MOUSE1.321e-2132.97Nucleoporin p58/p45 OS=Mus musculus OX=10090 GN=Nu... [more]
sp|Q9VDV3|NUP58_DROME1.010e-1325.81Nuclear pore complex protein Nup58 OS=Drosophila m... [more]
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BLAST of Nucleoporin p58/p45 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183AEJ21.166e-3939.81Uncharacterized protein OS=Echinostoma caproni OX=... [more]
A0A504YGY51.965e-3739.39Methionine aminopeptidase 1D mitochondrial OS=Fasc... [more]
A0A2H1CJX02.193e-3739.20Methionine aminopeptidase 1D mitochondrial OS=Fasc... [more]
A0A4V3SFF71.107e-3335.35Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LWL62.255e-3335.35Uncharacterized protein OS=Opisthorchis felineus O... [more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nup584.440e-2430.42nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-23... [more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nup589.038e-2835.89nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-23... [more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Nucleoporin p58/p45 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO346893.394e-1032.35Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Nucleoporin p58/p45 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
nup586.012e-2332.52nucleoporin 58 [Source:NCBI gene;Acc:101165014][more]
nup581.267e-2233.69nucleoporin 58 [Source:NCBI gene;Acc:101165014][more]
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BLAST of Nucleoporin p58/p45 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000077615.10.000e+098.92SMESG000077615.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002709 ID=SMED30002709|Name=Nucleoporin p58/p45|organism=Schmidtea mediterranea sexual|type=transcript|length=2398bp
ATTTTGAAATATTTGAATTAAGATTTTAATTTACTCTAAATACTATAATT
ATAATTTATAATTAACAATTTACATGAATTCATCACTATTCAATAATAAC
TCAATTTCTAACCAGCAAAATGTTTTTGGTACTCCAAATAATGCATTATC
TCAACCTACGCCTTTTAGTTTGGGACTGAACACTCAAAATACAGCGTTAG
GGGCAAACAATTCCCTATTCACTACTCCTACGCAAAGTTCATTGTTTGGA
GGTCAGTCTAATCAGTCATCCACAGGATTCGCGATTTCTGGAAACTCTAA
TTCATCAAGCATGTTTGGCCCAACTAGTAACAATAGTTTTGGAAATAATA
CTGGATATATAGGATCTAATAATCCCATGTTAACCAATTCGAATATTTCT
TCAACGCCCACTTCAAATAATTCTATATTTGAAAATAAGACAATGTTTAG
TACGCAAAATCTAGCCTCTAGTCAGGGTACTGGATTCGCAACAAATTCAC
CTCAAACTGGTTTCAATATAGGAAACCAAAATACTGTTTCATCAAATTTC
TCGTTTGGAACAATGGGTAATTCATCAAGTAGTACAGTCGCACCACAATC
CTTGTTTGGGTTAGATTCTACTACTAAATCCACCTTTGGGTCGGTTAGTA
CGAATTTGACCACGATGTTCAATACCCCTTCAAGCTCTTCAAACACTTTT
GGTGTTTCAAATAATGCCGGATTTTCACAATTAGGAACTACCTTTTCTAA
CCCAGGACTTAATAATAATACATTTCCGAATACTAATTCTACTACTTCAA
CATTAGCAAATTCTATTGTGAGTCAATCGGGATCACCTTTTGGGATTGGA
TCATCAAACCAGACCAGTAATACGTTTTCATTTGCTGCTCCACAGCAGAT
TTCAACAATAAGTTCTAATTTAATCGGTACCACACAAAGTTCGTTTGGTT
TTCAATCTATTACACCAACACAGAATACTAGCTCTATAGCACCGGTTGGT
GGGCAAAATACATTTTCATTTGCATCGCCAGCAAGTATTCTTACAACAAA
TGCTAGCGCACCAATTTCAAATTTCTGTGTGTCACAAGCAAATATATATA
CAGGATTGCCTCTCACTTCGACATCATTTAACTCTAATTCATTAATTAAT
AAAACGACAGCATCTACTTTTCCTCTGAATCTCAGCCAGTCTACAACATC
AACAATTTCACAGTCTAGCTTATCAGTGACAAGTTCAGGATTGGGTGGAG
TCGCATCAAGTAAACTTCAAATCAATAGTGCTTCTCCTTTAATCAGCAGT
TCTGTATCGGCTAAGAAAGGGTTAGGAGGATCACCAATTTCCGATTCCTT
AAAATCAATTGCTTCAAAGGACGCTGCTCATAAAATAAGCATCGTTAAAC
AAGTCAAAGATACCGATTTGCTTCCTGAACTTAAAGAAACCGTTGAACAT
TTCAAACAGTTTGTTACTGAACAAAAGAAATTAAAGGAAGAAATCATTAA
ATCAAACGAGGTAACAAACCTAATGACAAGAGTTGAAGAAGAATCACAAA
TATTGCGTCAATCTATTTCAGATGTAGCAAATGGCTTACAAAAAATTCAA
GTTCAGAGTAATAAATTAAAATCAGACATAAGTAAAGAACAATCAAACAT
TAAAATCGCACAAACTAGTTCAGAAGCATCTAATAATTTGGCATTGGATC
GCAATGAAACGTCTAGTTATTTTGGTAACAAAGTAAGAGAACTTGAAAAT
CGAGCTGGTCTTTATTTGCAAGAAATAGAAGTTGTAGAATCAATGTGTAA
TTCATCTAACAAATCTGCTTTAACAACAAGAGATTTGGTAGAAATTATAC
GGAGAATGGACGATGAATTTATTGGATTAGCTGCTCAGCTTTACGCAGTC
CATGAACGCGTAAAAATGGCTAAAACAGAATATTTGCGCCGATATAAACA
AGCCAATAATCATCAAAATCCATTTTTAGCTATAGAAGGCCGATTTGGAG
ATACCTTTGAATCAATTAGTGAATTGAATGACGTTAAAAGATCTAATTCA
AATAAAAATTCCGCTTTAAAATTTAGTGACAACGTTGGCAGTTCACCATT
CGATAATAATTGCTACATTAATCAACTGAATTCTTTTTCTATTCCGAAAA
CAGTTAATAATGCCCAAAAACCCAGCATATTTGGAATCAACAACAACAAT
CCATCAATGAATCCATCTGCAGTTACTGCAACTACGATTCCATTCTCGTT
TTCTACAACCAATTCTTCATTTACTCTCAATAAACCACCACCAACCAATT
TATTTTTAAGCGATACGGTGTCCAATAAGAAAAGAAGATAAATGATTATT
ATGTAATTGAATAAAATTGTGTTTGTTGTTATACACTAAACTTTTCCG
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protein sequence of SMED30002709-orf-1

>SMED30002709-orf-1 ID=SMED30002709-orf-1|Name=SMED30002709-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=756bp
MNSSLFNNNSISNQQNVFGTPNNALSQPTPFSLGLNTQNTALGANNSLFT
TPTQSSLFGGQSNQSSTGFAISGNSNSSSMFGPTSNNSFGNNTGYIGSNN
PMLTNSNISSTPTSNNSIFENKTMFSTQNLASSQGTGFATNSPQTGFNIG
NQNTVSSNFSFGTMGNSSSSTVAPQSLFGLDSTTKSTFGSVSTNLTTMFN
TPSSSSNTFGVSNNAGFSQLGTTFSNPGLNNNTFPNTNSTTSTLANSIVS
QSGSPFGIGSSNQTSNTFSFAAPQQISTISSNLIGTTQSSFGFQSITPTQ
NTSSIAPVGGQNTFSFASPASILTTNASAPISNFCVSQANIYTGLPLTST
SFNSNSLINKTTASTFPLNLSQSTTSTISQSSLSVTSSGLGGVASSKLQI
NSASPLISSSVSAKKGLGGSPISDSLKSIASKDAAHKISIVKQVKDTDLL
PELKETVEHFKQFVTEQKKLKEEIIKSNEVTNLMTRVEEESQILRQSISD
VANGLQKIQVQSNKLKSDISKEQSNIKIAQTSSEASNNLALDRNETSSYF
GNKVRELENRAGLYLQEIEVVESMCNSSNKSALTTRDLVEIIRRMDDEFI
GLAAQLYAVHERVKMAKTEYLRRYKQANNHQNPFLAIEGRFGDTFESISE
LNDVKRSNSNKNSALKFSDNVGSSPFDNNCYINQLNSFSIPKTVNNAQKP
SIFGINNNNPSMNPSAVTATTIPFSFSTTNSSFTLNKPPPTNLFLSDTVS
NKKRR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0008139nuclear localization sequence binding
GO:0017056structural constituent of nuclear pore
GO:0005515protein binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR024882Nucleoporin_p58/p45
IPR001024PLAT/LH2_dom
Vocabulary: cellular component
TermDefinition
GO:0005643nuclear pore
Vocabulary: biological process
TermDefinition
GO:0006913nucleocytoplasmic transport
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 502..522
NoneNo IPR availablePFAMPF15967Nucleoporin_FG2coord: 324..623
e-value: 2.6E-29
score: 102.3
IPR024882Nucleoporin p58/p45PANTHERPTHR13437NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1coord: 278..710