SMED30002685

Overview
NameSMED30002685
Smed IDSMED30002685
Length (bp)892
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30002685 (SMED30002685) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30002685 (SMED30002685) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002685

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30002685SMESG000065828.1 dd_Smed_v4_43988_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30002685SMESG000065828.1 dd_Smed_v4_43988_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30002685SMESG000065828.1 dd_Smed_v4_43988_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30002685 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.013762:6501..7384 -4330
Homology
[Close]
BLAST of SMED30002685 vs. TrEMBL
Match: A0A0L8FYC5 (Uncharacterized protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22004138mg PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.203e-6
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 2 
Query:  371 FRSILLDEWVTFHPIRMNVTVKDYNDATAV-ELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCNYGTKWSNGTDFNLPQILF 745
            FR  LLD W    PI   V +  Y   TAV  +VF  R+T  +++WF+ NNL SS PW    ++     YFS++G     RFY+S Y+ +CS D+G+  ++  P+ C++       +D+N P I +
Sbjct:  111 FRHPLLDFWNRL-PIEQ-VKLVIYKKQTAVVTMVFDGRNTT-IENWFSPNNLKSS-PWKD--LEPGRTNYFSLAGFRSQRRFYVSNYHDVCSKDRGWLFITEPPVPCSWAK-----SDYN-PTIFY 224
[Close]
BLAST of SMED30002685 vs. TrEMBL
Match: A0A1I8GLC5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.728e-6
Identity = 51/158 (32.28%), Postives = 76/158 (48.10%), Query Frame = 2 
Query:  263 VLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDE--WVTFHPIRMNVTVKDYNDATAV-ELVFTV-RSTDDV--QSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMR-FYISTYNAICSIDKGFFGVSVQPMLCNYGTK-WSN 712
            +L+ + SG   + +    TK PS  D+  D S+   +RS  LD   W   H     +  +  +D   V ++VF V R T  V   +WFT   L+SS P+ +     + Y YFSV+G     R F+I+   A C+ D GF+ VS +   C +  K WS 
Sbjct: 1015 LLYTVKSGAGHEVFKTFRTKGPS--DIPADRSLPDLYRSDQLDALAWTLLHTGYKRIVAEMRSDGRRVAQVVFDVSRHTKSVGMTNWFTPTRLVSSYPYHLG---KTGYNYFSVAGHRAHKRTFFINKVYAGCAGDLGFWMVSDRRDPCKWANKGWSG 1167
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BLAST of SMED30002685 vs. TrEMBL
Match: A0A1I8GLP2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 8.045e-6
Identity = 51/157 (32.48%), Postives = 76/157 (48.41%), Query Frame = 2 
Query:  263 VLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDE--WVTFHPIRMNVTVKDYNDATAV-ELVFTV-RSTDDV--QSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMR-FYISTYNAICSIDKGFFGVSVQPMLCNYGTK-WS 709
            +L+ + SG   + +    TK PS  D+  D S+   +RS  LD   W   H     +  +  +D   V ++VF V R T  V   +WFT   L+SS P+ +     + Y YFSV+G     R F+I+   A C+ D GF+ VS +   C +  K WS
Sbjct: 1461 LLYTVKSGAGHEVFKTFRTKGPS--DIPADRSLPDLYRSDQLDALAWTLLHTGYKRIVAEMRSDGRRVAQVVFDVSRHTKSVGMTNWFTPTRLVSSYPYHLG---KTGYNYFSVAGHRAHKRSFFINKVYAGCAGDLGFWMVSDRRDPCKWANKGWS 1612
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BLAST of SMED30002685 vs. TrEMBL
Match: C3XXV4 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_97527 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.781e-6
Identity = 35/134 (26.12%), Postives = 71/134 (52.99%), Query Frame = 2 
Query:  263 VLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSG-SPYGMRFYISTYNAICSIDKGFF 661
            ++F++ +G+    Y    ++   N+ V P L+   ++RS  LD W + H  ++ V++   +  T  +++F    ++   +WF+ + LISS PW  + +K +   +FS+ G   +G RF+I+     C+ D G+ 
Sbjct:  147 MVFKIVAGVPGSSYALWRSRGGYNDQVHPSLTGHSHYRSPDLDRWSSLHVTKVKVSLVTQHQHTR-DIIFNAHGSNR-DNWFSKDRLISS-PW--TDLKTAPANFFSIQGDDRHGRRFFINRSYGGCAHDWGWL 275
[Close]
BLAST of SMED30002685 vs. Planmine SMEST
Match: SMESG000065828.1 (SMESG000065828.1)

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 261/265 (98.49%), Postives = 262/265 (98.87%), Query Frame = 2 
Query:   56 MTIYFYLALSLLLFRPLDSKTKLNCALSASNIKQYFVRINDTCFLPQAKVYPVGGKLSSRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCNYGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEIAGTYDSDVSIFY 850
            MTIYFYLALSLLL RPLDSKTKLNCALSASNIKQYFVRINDTCFLPQAKVYPVGGKL+SRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYN ATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCNYGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEI GTYDSDVSIFY
Sbjct:    1 MTIYFYLALSLLLSRPLDSKTKLNCALSASNIKQYFVRINDTCFLPQAKVYPVGGKLASRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNYATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCNYGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEITGTYDSDVSIFY 265
[Close]
BLAST of SMED30002685 vs. Planmine SMEST
Match: SMESG000065749.1 (SMESG000065749.1)

HSP 1 Score: 212.231 bits (539), Expect = 7.787e-68
Identity = 110/240 (45.83%), Postives = 145/240 (60.42%), Query Frame = 2 
Query:  107 DSKTKLNCALSASNIKQYFVRINDTCFLPQAKVYPVGGKLSSRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCNYGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEIAGTY 826
            D    + C L A N + YF  IN+ C+ PQ     +  KL  R + K+++S V+FRL SG   DPY Y +T N S + V  D +   NFRSI+LDEW    P R+ +   DYND  AV L F V  TD + SWFT +N   S PWDI+F++  NYTYFS+ G+ +GM FYI+  N +C +D G FG++   M C   + W NGT F  PQI++VLNN  T DL ++F R LKYLEI+G Y
Sbjct:   18 DRNIAIECGLIALNGQMYFAVINNVCYFPQTPSSIINSKLLQRSYIKLNNSFVIFRLVSGSGVDPYGYWSTTNVSIHTVADDQNKLMNFRSIILDEWNNIKPSRLTLVAFDYNDQVAVILGFNVFQTDSITSWFTKSNFNYSFPWDINFLQTINYTYFSLIGASFGMCFYINQINDVCIVDSGIFGIAKPNMPC---SMWPNGTSFTYPQIMYVLNNERTPDLWKNFERKLKYLEISGEY 254
[Close]
BLAST of SMED30002685 vs. Planmine SMEST
Match: SMESG000065776.1 (SMESG000065776.1)

HSP 1 Score: 196.823 bits (499), Expect = 1.244e-61
Identity = 105/247 (42.51%), Postives = 147/247 (59.51%), Query Frame = 2 
Query:  113 KTKLNCALSASNIKQYFVRINDTCFLPQAKVYPVGGKLSSRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCN--YGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEIAGTYDSDVSIF 847
            K    C L   N + +F  IN+ C++ QA    V   L  R +  + + +VLFRL SG   DPYLY +T N S +    + +   NFRSI+LDEW    P+ M +T  DYND  +V L F V ++D + SWFT +N+ SS PW+ ++++  +Y YFS+SG+ +GMRFYI+  N  C  D GFFG+      C+  YG  W NGT F LPQI+++LN   T DL  +++ PLKYLEI+G YD +   F
Sbjct:   21 KNVYKCGLETMNKRVFFAIINNICYISQAPSSIVTSTLQWRSYSNLFNKMVLFRLVSGSGVDPYLYWSTTNRSIHTAADNSNKLQNFRSIILDEWDYVKPLIMTLTAFDYNDQISVILEFNVLASDSITSWFTKSNIKSSYPWNSTYLQTLSYFYFSMSGTSWGMRFYINIVNINCYRDAGFFGILSAVTGCSNQYGGFWPNGTAFILPQIMYILNVEKTYDLWYNYSYPLKYLEISGQYDKNTIFF 267
[Close]
BLAST of SMED30002685 vs. Planmine SMEST
Match: SMESG000065824.1 (SMESG000065824.1)

HSP 1 Score: 191.815 bits (486), Expect = 1.188e-59
Identity = 103/248 (41.53%), Postives = 144/248 (58.06%), Query Frame = 2 
Query:  113 KTKLNCALSASNIKQYFVRINDTCFLPQAKVYPVGGKLSSRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCN--YGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEIAGTYDSDVSIFY 850
            K    C     N + +F  IN+ C++ QA    V   L  R +  + + +VLFRL S    DPYLY +T N S      + +   NFRSI+LDEW    P+ M +T  DYND  +V L F V ++D + SWF  +N+ SS PW+ ++++  +Y YFS+SG+ +GMRFYI+  N  C  D GFFG+      C   YG  W NGT   LPQI+++LN   T DL  +++ PLKYLEI+G YD + SIF+
Sbjct:   21 KNVYKCGFQTMNKRVFFAIINNICYISQAPSSIVTSTLQWRSYSNLFNKMVLFRLVSVSGVDPYLYWSTTNSSIQTAADNSNKLQNFRSIILDEWDYVKPLIMTLTAFDYNDQVSVILEFNVLASDSITSWFIKSNIKSSYPWNSTYLRTLSYYYFSMSGTSWGMRFYINIVNIYCYTDAGFFGILTTATGCPNLYGGFWPNGTALQLPQIMYILNVEKTYDLWYNYSYPLKYLEISGQYDKN-SIFF 267
[Close]
BLAST of SMED30002685 vs. Planmine SMEST
Match: SMESG000065804.1 (SMESG000065804.1)

HSP 1 Score: 169.088 bits (427), Expect = 1.360e-51
Identity = 90/199 (45.23%), Postives = 124/199 (62.31%), Query Frame = 2 
Query:  260 IVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDLSVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSWFTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKGFFGVSVQPMLCN--YGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKYLEIAGTYDSDVSIFY 850
            + + RL SG   DPYLY +T N S      + +   NFRSI+LDEW    P+ M +T  DYND  +V L F V ++D + SWFT +N+ SS PW+ ++++  +Y YFS+SG+ +GMRFYI+  N  C  D GFFG+      C   YG  W NGT   LPQI+++LN   T DL  +++ PLKYLEI+G YD + SIF+
Sbjct:   15 VEIHRLVSGSGVDPYLYWSTTNSSIQTAADNSNKLQNFRSIILDEWDYVKPLIMTLTAFDYNDQISVILEFNVLASDSITSWFTESNIKSSYPWNSTYLQTLSYYYFSMSGTSWGMRFYINIANINCYTDAGFFGILTTAHDCPNLYGGFWPNGTALQLPQIMYILNVEKTYDLWYNYSYPLKYLEISGQYDKN-SIFF 212
The following BLAST results are available for this feature:
BLAST of SMED30002685 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0L8FYC51.203e-635.71Uncharacterized protein (Fragment) OS=Octopus bima... [more]
A0A1I8GLC53.728e-632.28Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8GLP28.045e-632.48Uncharacterized protein OS=Macrostomum lignano OX=... [more]
C3XXV48.781e-626.12Uncharacterized protein OS=Branchiostoma floridae ... [more]
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BLAST of SMED30002685 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002685 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000065828.10.000e+098.49SMESG000065828.1[more]
SMESG000065749.17.787e-6845.83SMESG000065749.1[more]
SMESG000065776.11.244e-6142.51SMESG000065776.1[more]
SMESG000065824.11.188e-5941.53SMESG000065824.1[more]
SMESG000065804.11.360e-5145.23SMESG000065804.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002685 ID=SMED30002685|Name=SMED30002685|organism=Schmidtea mediterranea sexual|type=transcript|length=892bp
GATATTTTCAAAACAAAAGCTATAAAATTATATTCTTAGTAATTATCTTT
AGATAATGACTATATATTTTTATTTAGCTCTGTCTTTGCTATTATTTCGC
CCCCTTGATTCCAAGACTAAATTGAATTGTGCGCTTAGTGCTTCCAATAT
AAAGCAATACTTTGTGAGGATCAACGATACCTGCTTCCTGCCCCAAGCTA
AAGTCTATCCTGTCGGTGGTAAGTTATCATCTAGAATTTTCAAAAAAATT
GATAGTTCAATCGTTTTATTTCGGCTTTCCTCGGGAATCGATGAAGATCC
ATATTTGTATCTCACAACTAAAAACCCTTCCAATAATGATGTGATTCCTG
ATCTTTCTGTTGACGGAAATTTCCGAAGCATTTTATTGGATGAATGGGTG
ACCTTTCATCCAATTAGGATGAATGTTACAGTGAAAGATTATAATGATGC
AACTGCTGTTGAATTGGTTTTCACTGTCCGTAGTACGGATGATGTGCAAT
CCTGGTTTACAGCAAATAACCTAATAAGCTCTATGCCATGGGATATCAGC
TTTATGAAGGCCAGTAATTATACATATTTTTCGGTTTCGGGCAGCCCTTA
CGGAATGAGATTTTACATAAGTACATATAATGCTATATGTTCAATTGATA
AAGGGTTCTTTGGAGTGTCTGTTCAACCAATGTTATGCAACTACGGTACA
AAATGGTCAAACGGCACAGATTTTAATTTACCACAAATATTGTTTGTTTT
AAACAATCGCGGAACTGATGATCTCATGCAAAGCTTTACTAGACCCTTAA
AGTACCTGGAAATAGCCGGTACTTATGATTCTGATGTTTCAATATTCTAC
TAAAACCTCCGTATCATTCTTAATAGATTTTCAAGATCGGAA
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protein sequence of SMED30002685-orf-1

>SMED30002685-orf-1 ID=SMED30002685-orf-1|Name=SMED30002685-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=266bp
MTIYFYLALSLLLFRPLDSKTKLNCALSASNIKQYFVRINDTCFLPQAKV
YPVGGKLSSRIFKKIDSSIVLFRLSSGIDEDPYLYLTTKNPSNNDVIPDL
SVDGNFRSILLDEWVTFHPIRMNVTVKDYNDATAVELVFTVRSTDDVQSW
FTANNLISSMPWDISFMKASNYTYFSVSGSPYGMRFYISTYNAICSIDKG
FFGVSVQPMLCNYGTKWSNGTDFNLPQILFVLNNRGTDDLMQSFTRPLKY
LEIAGTYDSDVSIFY*
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InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.525