Expressed conserved protein

Overview
NameExpressed conserved protein
Smed IDSMED30002658
Length (bp)1400
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Expressed conserved protein (SMED30002658) t-SNE clustered cells

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30002658) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Expressed conserved protein (SMED30002658) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30002658) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002658

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30002658SMESG000009577.1 SmedASXL_009158SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A0R3UHR3 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6901 PE=4 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.034e-57
Identity = 139/319 (43.57%), Postives = 173/319 (54.23%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQ-IDQIEEFVRHACTVMNPNQART-FLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNISVNN--ARLSEKAIQTDISIGCSFSSFLNPNMNFLNKLTATNSIFCD-QPQLRLVNDLSSLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXX---XXETREEIHNRHS----MFNE-INIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQ 962
            ME   + LI KYVR D VI CLEL G+ SA +   L S   I Q+E FV   C ++N  + R  FLG V+S H   F  P GV  GL LA+ ELK  N ++S N+    +S+  +QT+IS    F +            + T+S      P      D SSLP     +VD     + D   M    K N                 T+ +    HS      NE I++E L  HSSASA RLA+RQF+NANLV+ +HF + MEV+   EGG  RVTGIF CHLCR+KRER+  VRFS+ARNRYPVMSNVLSHLK HFQ
Sbjct:  101 MEPGLRDLIRKYVRVDYVIHCLELAGFDSAAVFTCLTSEANIRQLEAFVGTTCALINSTKIRQYFLGPVYSRHPTSFKLPAGVVCGLRLAIQELKQKNISMSFNSPLTTVSDATVQTEIS----FPTLGGSGGGGFGAASITSSEGSPPDPPFANAPDASSLPPPAHISVDNLP--YSDPPSMSVIEKGNLECKRVLDGLGGHFSMHTQPQSQQTHSKTSATLNENIDVERLIHHSSASACRLAARQFVNANLVRGQHFDMKMEVSGGGEGGQKRVTGIFYCHLCREKRERTCAVRFSVARNRYPVMSNVLSHLKTHFQ 413
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: W6UI17 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_04357 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.441e-54
Identity = 132/317 (41.64%), Postives = 178/317 (56.15%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDS-NQIDQIEEFVRHACTVMNPNQART-FLGSVFSSHADKFCFPIGVRMGLMLAVNELK---SLNGNISVNNARLSEKAIQTDIS-IGCSFSSFLN----PNMNFLNKLTATNSIFCDQPQLRLVNDLS-SLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXXXXETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQ 962
            M+   + LI KYVR+D VI CLEL G+ SA++   L+S   I Q+E FV   C ++N  + R  FLG V++ H   F  P GV  GL LAV ELK   +   + +V  + +S+ A QT++S +G S  +  +    P+  F N   A++S     P      +LS  LP    S V+       D    R +    S             +     +  +  + I++E L  HSSASA RLA+RQF+NANLV+ +HF ++MEV+   E G  RVTGIF CHLCR+KRER+  VRFS+ARNRYPVMSNVLSHLK HFQ
Sbjct:   97 MDQALRELIRKYVRADYVIHCLELAGFDSAVVFACLNSETNIRQLETFVGATCALINSQKIRQYFLGPVYARHPTNFKLPAGVVCGLQLAVEELKRTGTFTTSPAVPFSTISDAATQTEVSSLGPSSLTSSSEGSPPDPAFAN---ASDSSLIPPPAHISTENLSFHLPPPSLSTVESDCKRLFDCMGGRFSLPSQSQS----------HSPHSRSSSSTSVDNIDVERLIHHSSASACRLAARQFVNANLVRGQHFDMEMEVSGGGENGQKRVTGIFYCHLCREKRERTCAVRFSVARNRYPVMSNVLSHLKTHFQ 400
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A0R3X0B8 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS6545 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.515e-54
Identity = 131/321 (40.81%), Postives = 177/321 (55.14%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQ-IDQIEEFVRHACTVMN-PNQARTFLGSVFSSHADKFCFPIGVRMGLMLAVNELK---SLNGNISVNNARLSEKAIQTDIS-IGCSFSSFLN----PNMNFLNKLTATNSIFCDQPQLRLVNDLS-----SLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXXXXETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQ 962
            M+   + LI KYVR+D VI CLEL G+ +A++   L+S   I Q+E FV   C ++N P   + FLG V++ H   F  P GV  GL LAV ELK   +   ++SV    +S+ A QT++S +G S  +  +    P+  F N   A++S     P       LS      LP    S V+       D    R +                  + +   +  +  + I++E L  HSSASA RLA+RQF+NANLV+ +HF ++MEV+   E G  RVTGIF CHLCR+KRER+  VRFS+ARNRYPVMSNVLSHLK HFQ
Sbjct:   97 MDPALRELIRKYVRADYVIHCLELAGFDTAVVFACLNSETNIRQLEVFVGATCALINSPKIRQYFLGPVYARHPTNFKLPAGVVCGLQLAVEELKRTGTFTTSLSVPFNTISDAATQTEVSSLGPSSLTSSSEGSPPDPAFAN---ASDSSLIPPPAHISTESLSFHLPPQLPPPSISTVESDCKRLFDCMGGRFSLPQQPQS----------HSPQPRSSSSASTDNIDVERLIHHSSASACRLAARQFVNANLVRGQHFDMEMEVSGGGENGQKRVTGIFYCHLCREKRERTCAVRFSVARNRYPVMSNVLSHLKTHFQ 404
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A068WMP9 (Expressed conserved protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000675900 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.211e-53
Identity = 133/317 (41.96%), Postives = 177/317 (55.84%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDS-NQIDQIEEFVRHACTVMNPNQART-FLGSVFSSHADKFCFPIGVRMGLMLAVNELK---SLNGNISVNNARLSEKAIQTDIS-IG----CSFSSFLNPNMNFLNKLTATNSIFCDQPQLRLVNDLS-SLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXXXXETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQ 962
            M+   + LI KYVR+D VI CLEL G+ SA++   L+S   I Q+E FV   C ++N  + R  FLG V++ H   F  P GV  GL LAV ELK   +   + +V  + +S+ A QT++S +G     S S    P+  F N   A++S     P      +LS  LP    S V+       D    R +    S             +     +  +  + I++E L  HSSASA RLA+RQF+NANLV+ +HF ++MEV+   E G  RVTGIF CHLCR+KRER+  VRFS+ARNRYPVMSNVLSHLK HFQ
Sbjct:  133 MDQALRELIRKYVRADYVIHCLELAGFDSAVVFACLNSETNIRQLETFVGATCALINSQKIRQYFLGPVYARHPTNFKLPAGVVCGLQLAVEELKRTGTFTTSPAVPFSTISDAATQTEVSSLGPSSLTSSSEGSPPDPAFAN---ASDSSLIPPPAHISTENLSFHLPPPSLSTVESDCKRLFDCMGGRFSLPSQSQS----------HSPHSRSSSSTSVDNIDVERLIHHSSASACRLAARQFVNANLVRGQHFDMEMEVSGGGENGQKRVTGIFYCHLCREKRERTCAVRFSVARNRYPVMSNVLSHLKTHFQ 436
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A564Y802 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS3877 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 7.946e-53
Identity = 127/317 (40.06%), Postives = 177/317 (55.84%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSN-QIDQIEEFVRHACTVMNPNQART-FLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNI---SVNNARLSEKAIQTD-----ISIGCSFSSFLNPNMNFLNKLTATNSIFCDQP-QLRLVNDLSSLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXXXXETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQ 962
            M+   + LI KY+R+D VI CLEL G+ +A++   L++   I ++E FV   C ++  ++ R  FLG +++ H   F  P GV  GL LAV ELK  +G     S +   +S+ A QTD     +S   S S    P+  F N     +SI    P  +   ++ S     P  N   + DG  D+  + +          +   +   ++R      +S  + I++E L  HSSASA RLA+RQF+NANLV+ +HF ++MEV    E G  RVTGIF CHLCR+KRER+  VRFS+ARNRYPVMSNVLSHLK HFQ
Sbjct:   99 MDPALRELIRKYIRADYVIHCLELAGFDNAVVFSCLNNEINIRKLETFVGTTCALITSHKIRQHFLGPLYARHPSNFKLPAGVVCGLRLAVEELKRSSGFPVLPSTSYNAISDAATQTDGSNPGVSSMASSSEGSPPDPAFANG--GVDSILIPPPAHISSADNFSFANHPPLPNPSPSFDG--DSKRLLDCMGGGRFSMPSQPQSTSPQSR------YSFSDNIDVERLIHHSSASACRLAARQFVNANLVRGQHFDMEMEVTGGGENGQKRVTGIFYCHLCREKRERTCAVRFSVARNRYPVMSNVLSHLKTHFQ 405
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000009577.1 (SMESG000009577.1)

HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQIDQIEEFVRHACTVMNPNQARTFLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNISVNNARLSEKAIQTDISIGCSFSSFLNPNMNFLNKLTATNSIFCDQPQLRLVNDLSSLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXXXXETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQPLLMSPTSHDSNDTGGNHSVESQSRTLIKQENLIYSQSDSSVGVESLSPFNLDQLMMGGCVNPSSVAVGHQVEMKMFPAVQDK 1211
            METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQIDQIEEFVRHACTVMNPNQARTFLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNISVNNARLSEKAIQTDISIGCSFSSFLNPNMNFLNKLTATNSIFCDQPQLRLVNDLSSLPSTPKSNVDQASDGFVDNAEMRNTNKLNSSVNNNSSNNNHNETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQPLLMSPTSHDSNDTGGNHSVESQSRTLIKQENLIYSQSDSSVGVESLSPFNLDQLMMGGCVNPSSVAVGHQVEMKMFPAVQDK
Sbjct:    1 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQIDQIEEFVRHACTVMNPNQARTFLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNISVNNARLSEKAIQTDISIGCSFSSFLNPNMNFLNKLTATNSIFCDQPQLRLVNDLSSLPSTPKSNVDQASDGFVDNAEMRNTNKLNSSVNNNSSNNNHNETREEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQPLLMSPTSHDSNDTGGNHSVESQSRTLIKQENLIYSQSDSSVGVESLSPFNLDQLMMGGCVNPSSVAVGHQVEMKMFPAVQDK 389
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000012897.1 (SMESG000012897.1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.235e-16
Identity = 66/306 (21.57%), Postives = 135/306 (44.12%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQIDQIEEFVRHACTVMNPNQARTFLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNISVNNARLSEKAIQTDISIGCSFSSFLNPNMNFLNKLTATNSIFCDQPQLRLVNDLSSLPSTPKSNVDQASDGFVDNAEMRXXXXXXXXXXXXXXXXXXXETREEIHNRHSMFNEINIE-HLKQHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHF 959
            M+  CK+++  YV+SD +I   E+ G      I  ++   ++++E+++ +  +  +      +L  +F   + +F F  G+RM ++ AV  +K              E A+Q                                       N++ S     K+++DQ+ +  +DN E              +      + +E   N  S  +EI  +  +    + + I   S++F +  L     F +D+++  T E GP +++G+F CHLCR+ + ++  ++FS+++  Y ++SNV++HLK+HF
Sbjct:    1 MDNFCKSILLDYVKSDKLIFLFEICGVIKINDIMEINDETLNKMEKYIYNFLS--HEKNIDHYLDPMFIYRSPEFLFSPGLRMKILRAVKRIKE-------------EYALQ---------------------------------------NEIQSADKERKTSIDQSDE--IDNTE-----------AVVNKQVEEIKDKETDPNFQSPLSEIAKKAEILNTWAQNVIERVSKKFTDVKLQYTEDFDLDVKILKT-ENGP-KLSGLFICHLCRKFKGQTKSIKFSVSKENYVILSNVITHLKLHF 237
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000036851.1 (SMESG000036851.1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.024e-10
Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 3 
Query:   45 METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQIDQIEEFVRHACTVMNPNQARTFLGSVFSSHADKFCFPIGVRMGLMLAV 311
            M+  CK +I +   S+ +IACLEL      + + N+D   ID+IE F +  C +M P+Q + ++   F ++  +F    G+R+ L+ +V
Sbjct:    1 MDEFCKQIILEVTGSEKIIACLELCDIKEDVDVINIDDKVIDRIENFTKECCLLMLPDQMQFYIDERFYNNPSRFLISPGIRIKLLRSV 89

HSP 2 Score: 55.8398 bits (133), Expect = 1.220e-8
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 3 
Query:  705 QHSSASAIRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRY 917
            +  S S +  A++ F+ ANL     F +DME N    G P R TGIF+CH+CR  R  S  VRFSI++  Y
Sbjct:  166 EAWSKSIVHRAAKIFLGANLEPKVDFDMDMETN-YQNGVPKR-TGIFHCHICRATRGSSATVRFSISKLNY 234
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000044230.1 (SMESG000044230.1)

HSP 1 Score: 52.373 bits (124), Expect = 4.256e-7
Identity = 23/81 (28.40%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:  726 IRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQPL 968
            I+ A ++FI+ +LVQ+  F +        +   L   G F C++C + +   + ++F     R  V +N+++HL+IHFQ +
Sbjct:  261 IKFAEQKFIDCHLVQDIDFNV---YEIIDDDSSLTNRGCFLCYICLKTKSNESKIKFFFTSTRSVVFTNIVAHLRIHFQSV 338
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000047524.1 (SMESG000047524.1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.279e-6
Identity = 21/82 (25.61%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:  726 IRLASRQFINANLVQNRHFKIDMEVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSHLKIHFQPLL 971
            ++ A++ FI  +L+ +  F + +  N +++     + G ++CHLC  +++  T ++F  ++    + +N+ SHLK H+Q +L
Sbjct:  179 VKNAAKNFIECSLIPDVDFHLSIPENDSTD-----LIGYYHCHLCTDRKKAMTKIKFRFSKYNSVIYTNINSHLKTHYQYVL 255
The following BLAST results are available for this feature:
BLAST of Expressed conserved protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3UHR31.034e-5743.57Uncharacterized protein OS=Mesocestoides corti OX=... [more]
W6UI172.441e-5441.64Uncharacterized protein OS=Echinococcus granulosus... [more]
A0A0R3X0B83.515e-5440.81Uncharacterized protein OS=Hydatigena taeniaeformi... [more]
A0A068WMP92.211e-5341.96Expressed conserved protein OS=Echinococcus granul... [more]
A0A564Y8027.946e-5340.06Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
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BLAST of Expressed conserved protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000009577.10.000e+0100.00SMESG000009577.1[more]
SMESG000012897.11.235e-1621.57SMESG000012897.1[more]
SMESG000036851.17.024e-1031.46SMESG000036851.1[more]
SMESG000044230.14.256e-728.40SMESG000044230.1[more]
SMESG000047524.12.279e-625.61SMESG000047524.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002658 ID=SMED30002658|Name=Expressed conserved protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1400bp
CTATATAAATCTTATATGTAAATTAATACATATTATTCTATTGTATGGAG
ACGGACTGCAAAGCGTTAATAGATAAATATGTTCGTTCAGACTCTGTAAT
TGCATGCCTTGAGCTTACTGGTTACACATCGGCAATACTAATTAGAAATC
TTGACAGTAATCAAATAGACCAAATTGAAGAATTTGTAAGACATGCATGT
ACAGTGATGAACCCAAATCAAGCTCGAACGTTTTTAGGAAGTGTATTTAG
CAGTCATGCTGATAAATTTTGTTTTCCAATTGGCGTGAGAATGGGTTTAA
TGCTAGCTGTCAACGAATTGAAATCATTAAATGGAAATATCTCAGTAAAT
AATGCACGTTTGTCAGAAAAGGCAATTCAAACTGATATTAGTATAGGTTG
CTCTTTCAGTTCGTTTCTCAATCCAAATATGAATTTTTTAAACAAATTAA
CAGCAACGAATTCAATTTTCTGTGATCAACCACAACTCCGATTAGTCAAT
GATCTTAGCTCGCTCCCGTCTACTCCCAAATCTAATGTTGACCAAGCATC
TGATGGATTTGTCGACAATGCCGAAATGAGGAATACTAATAAATTAAACT
CTTCAGTTAATAATAATAGTAGTAATAATAATCACAATGAAACTCGAGAG
GAAATCCATAATCGTCATTCTATGTTCAATGAAATCAATATCGAACATCT
GAAGCAGCATTCAAGTGCAAGTGCAATTCGACTTGCATCTCGCCAGTTTA
TTAATGCAAATCTCGTTCAAAATCGTCATTTCAAAATCGATATGGAGGTC
AATCCGACATCTGAAGGCGGCCCATTGCGAGTTACCGGGATTTTTAATTG
TCATCTCTGTCGTCAAAAGCGCGAACGATCTACTCCAGTTCGATTCTCGA
TTGCTCGGAATCGATATCCCGTCATGAGCAATGTCCTTTCCCATCTCAAA
ATTCATTTCCAACCGCTTTTGATGTCGCCTACGTCTCACGACAGCAACGA
TACCGGAGGAAATCATTCTGTCGAGTCACAGAGTCGGACTCTGATCAAGC
AAGAGAATTTGATATATTCTCAGTCGGATTCCAGTGTTGGAGTCGAATCG
TTGTCACCGTTCAACCTCGACCAATTAATGATGGGCGGTTGCGTGAACCC
CTCCTCGGTTGCGGTCGGTCACCAGGTTGAGATGAAAATGTTCCCCGCCG
TTCAGGACAAATGAGAAATTCCGTTCCAGGGATCTTCCAGTCAGGCAGCA
ATAGCGATTATCGATTGGATGTTTTGTGTTCGTCTCCGCGTCCATTGCTA
AATTCAATTCGTGCCTTTTTGTTATTATTCCCTATGAGTTTCAGTCGCCC
GTTGATTCGGACGAATTCTTTGTAAATAAATTAAAATTTCTTGTCTTAAA
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protein sequence of SMED30002658-orf-1

>SMED30002658-orf-1 ID=SMED30002658-orf-1|Name=SMED30002658-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=390bp
METDCKALIDKYVRSDSVIACLELTGYTSAILIRNLDSNQIDQIEEFVRH
ACTVMNPNQARTFLGSVFSSHADKFCFPIGVRMGLMLAVNELKSLNGNIS
VNNARLSEKAIQTDISIGCSFSSFLNPNMNFLNKLTATNSIFCDQPQLRL
VNDLSSLPSTPKSNVDQASDGFVDNAEMRNTNKLNSSVNNNSSNNNHNET
REEIHNRHSMFNEINIEHLKQHSSASAIRLASRQFINANLVQNRHFKIDM
EVNPTSEGGPLRVTGIFNCHLCRQKRERSTPVRFSIARNRYPVMSNVLSH
LKIHFQPLLMSPTSHDSNDTGGNHSVESQSRTLIKQENLIYSQSDSSVGV
ESLSPFNLDQLMMGGCVNPSSVAVGHQVEMKMFPAVQDK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002111X2 cell
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane