SMED30002490
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002490 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30002490 aligns in the following genomic locations:
Homology
BLAST of SMED30002490 vs. Ensembl Human
Match: TOPORS (TOP1 binding arginine/serine rich protein [Source:HGNC Symbol;Acc:HGNC:21653]) HSP 1 Score: 51.2174 bits (121), Expect = 5.256e-6 Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYH 333 + C IC++ + V LD CLH+FC C+ +W CP CKQ P + ++H Sbjct: 100 DSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQ-PFDSIFH 150
BLAST of SMED30002490 vs. Ensembl Human
Match: TOPORS (TOP1 binding arginine/serine rich protein [Source:HGNC Symbol;Acc:HGNC:21653]) HSP 1 Score: 51.2174 bits (121), Expect = 6.039e-6 Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYH 333 + C IC++ + V LD CLH+FC C+ +W CP CKQ P + ++H Sbjct: 35 DSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQ-PFDSIFH 85
BLAST of SMED30002490 vs. Ensembl Fly
Match: Topors (gene:FBgn0267351 transcript:FBtr0331977) HSP 1 Score: 53.9138 bits (128), Expect = 3.828e-7 Identity = 19/59 (32.20%), Postives = 33/59 (55.93%), Query Frame = 1 Query: 160 IKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHV 336 ++R +C+IC+ D+C+H+FC CLC+W + CP CKQ ++++V Sbjct: 93 VERNSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNV 151
BLAST of SMED30002490 vs. Ensembl Fly
Match: Topors (gene:FBgn0267351 transcript:FBtr0086570) HSP 1 Score: 53.9138 bits (128), Expect = 3.828e-7 Identity = 19/59 (32.20%), Postives = 33/59 (55.93%), Query Frame = 1 Query: 160 IKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHV 336 ++R +C+IC+ D+C+H+FC CLC+W + CP CKQ ++++V Sbjct: 93 VERNSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNV 151
BLAST of SMED30002490 vs. Ensembl Zebrafish
Match: toporsa (topoisomerase I binding, arginine/serine-rich a [Source:ZFIN;Acc:ZDB-GENE-030131-6401]) HSP 1 Score: 56.9954 bits (136), Expect = 6.444e-8 Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDK 342 E C IC+++ + + LD CLH+FC C+ +W CP CKQ P N YH K Sbjct: 25 ESKCPICLDHFKNISYLDVCLHKFCFCCIHEWSKNKAECPLCKQ-PFNSFYHTIK 78
BLAST of SMED30002490 vs. Ensembl Zebrafish
Match: toporsb (topoisomerase I binding, arginine/serine-rich b [Source:ZFIN;Acc:ZDB-GENE-110728-3]) HSP 1 Score: 55.0694 bits (131), Expect = 2.270e-7 Identity = 31/98 (31.63%), Postives = 47/98 (47.96%), Query Frame = 1 Query: 118 VKRKSLENNECRILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQ--IWNKTNF 405 V++K + + L+ + C IC++ V SLD CLH+FC C+ +W CP CKQ P + ++H K NDFK+ +W N Sbjct: 10 VRKKDSASKTSQRLLANASPDSKCPICLDGFNNVASLDRCLHQFCFRCIHEWSKNKAECPLCKQ-PFHSIFHSVKGE-------NDFKEFVLWPPENG 99
BLAST of SMED30002490 vs. Ensembl Zebrafish
Match: toporsa (topoisomerase I binding, arginine/serine-rich a [Source:ZFIN;Acc:ZDB-GENE-030131-6401]) HSP 1 Score: 50.0618 bits (118), Expect = 8.148e-7 Identity = 22/53 (41.51%), Postives = 30/53 (56.60%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHV 336 E C IC+++ + + LD CLH+FC C+ +W CP CKQ P N YH Sbjct: 25 ESKCPICLDHFKNISYLDVCLHKFCFCCIHEWSKNKAECPLCKQ-PFNSFYHT 76
BLAST of SMED30002490 vs. Ensembl Xenopus
Match: TOPORS (topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase [Source:NCBI gene;Acc:734040]) HSP 1 Score: 50.8322 bits (120), Expect = 6.335e-6 Identity = 24/69 (34.78%), Postives = 34/69 (49.28%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQ 384 + C IC++ + V LD CLH FC C+ +W CP CKQ P ++H K +DFK+ Sbjct: 56 DSKCPICLDRFDNVSHLDRCLHRFCFRCIQEWAKNKAECPLCKQ-PFYSIFHSVKAE-------DDFKE 116
BLAST of SMED30002490 vs. Ensembl Mouse
Match: Topors (topoisomerase I binding, arginine/serine-rich [Source:MGI Symbol;Acc:MGI:2146189]) HSP 1 Score: 51.2174 bits (121), Expect = 3.599e-6 Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYH 333 + C IC++ + V LD CLH+FC C+ +W CP CKQ P + ++H Sbjct: 101 DSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQ-PFDSIFH 151
BLAST of SMED30002490 vs. UniProt/SwissProt
Match: sp|P29129|ICP0_SUHVF (E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) OX=31523 GN=EP0 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 5.285e-7 Identity = 21/68 (30.88%), Postives = 35/68 (51.47%), Query Frame = 1 Query: 184 DCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQI 387 DC IC++ T C+H+FCL C+ +W CP C +++L+HVD D+ + P+ + Sbjct: 45 DCPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTACPLCNARVTSILHHVDSDASFVETPVEGATDV 112
BLAST of SMED30002490 vs. UniProt/SwissProt
Match: sp|Q9V8P9|TOPRS_DROME (E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster OX=7227 GN=Topors PE=1 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 3.837e-6 Identity = 19/59 (32.20%), Postives = 33/59 (55.93%), Query Frame = 1 Query: 160 IKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHV 336 ++R +C+IC+ D+C+H+FC CLC+W + CP CKQ ++++V Sbjct: 93 VERNSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNV 151
BLAST of SMED30002490 vs. TrEMBL
Match: A0A3M0LJZ3 (RING-type domain-containing protein OS=Hirundo rustica rustica OX=333673 GN=DUI87_04048 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.109e-7 Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 187 CSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQI-WNKTN 402 C IC+ +V+ +DTCLH FC C+ +W ++ CP C+Q +L+ V D +D+++I WNKTN Sbjct: 33 CPICLGDVDNAAHVDTCLHTFCFGCIRQWAAVRAACPLCRQRFGRILHTVRAD--------DDYEEITWNKTN 97
BLAST of SMED30002490 vs. Ensembl Cavefish
Match: toporsb (E3 ubiquitin-protein ligase Topors-like [Source:NCBI gene;Acc:103043679]) HSP 1 Score: 55.8398 bits (133), Expect = 1.268e-7 Identity = 28/89 (31.46%), Postives = 40/89 (44.94%), Query Frame = 1 Query: 118 VKRKSLENNECRILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQ 384 +++K R L+ + C IC++ SLD CLH FC C+ +W CP CKQ P ++H K NDFK+ Sbjct: 10 MRKKEAGAKSSRRLLTETSPDSKCPICLDRFNNAASLDRCLHRFCFRCIHEWSKNKAECPLCKQ-PFRSIFHSVKAE-------NDFKE 90
BLAST of SMED30002490 vs. Ensembl Cavefish
Match: toporsb (E3 ubiquitin-protein ligase Topors-like [Source:NCBI gene;Acc:103043679]) HSP 1 Score: 55.8398 bits (133), Expect = 1.268e-7 Identity = 28/89 (31.46%), Postives = 40/89 (44.94%), Query Frame = 1 Query: 118 VKRKSLENNECRILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQ 384 +++K R L+ + C IC++ SLD CLH FC C+ +W CP CKQ P ++H K NDFK+ Sbjct: 10 MRKKEAGAKSSRRLLTETSPDSKCPICLDRFNNAASLDRCLHRFCFRCIHEWSKNKAECPLCKQ-PFRSIFHSVKAE-------NDFKE 90
BLAST of SMED30002490 vs. Ensembl Cavefish
Match: toporsb (E3 ubiquitin-protein ligase Topors-like [Source:NCBI gene;Acc:103043679]) HSP 1 Score: 55.8398 bits (133), Expect = 1.268e-7 Identity = 28/89 (31.46%), Postives = 40/89 (44.94%), Query Frame = 1 Query: 118 VKRKSLENNECRILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLNDFKQ 384 +++K R L+ + C IC++ SLD CLH FC C+ +W CP CKQ P ++H K NDFK+ Sbjct: 10 MRKKEAGAKSSRRLLTETSPDSKCPICLDRFNNAASLDRCLHRFCFRCIHEWSKNKAECPLCKQ-PFRSIFHSVKAE-------NDFKE 90
BLAST of SMED30002490 vs. Ensembl Cavefish
Match: toporsa (topoisomerase I binding, arginine/serine-rich a [Source:ZFIN;Acc:ZDB-GENE-030131-6401]) HSP 1 Score: 50.8322 bits (120), Expect = 4.415e-6 Identity = 20/61 (32.79%), Postives = 30/61 (49.18%), Query Frame = 1 Query: 151 RILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYH 333 + + K + C IC++ + +D CLH FC C+ +W CP CKQ P +YH Sbjct: 60 KTISKEASPDSKCPICLDGFRNISYVDKCLHRFCFRCIQEWAKNKAECPLCKQ-PFTSIYH 119
BLAST of SMED30002490 vs. Ensembl Medaka
Match: ENSORLT00000038210.1 (pep primary_assembly:ASM223467v1:1:15572725:15576894:1 gene:ENSORLG00000022960.1 transcript:ENSORLT00000038210.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 45.4394 bits (106), Expect = 4.847e-6 Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 1 Query: 178 EDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLL 357 + C IC++ V LD CLH+FC C+ +W CP CKQ P N +YH K+SF Sbjct: 8 DSKCPICLDGFHNVSYLDRCLHKFCFRCILEWSKNKAECPLCKQ-PFNTIYH-KKNSFCC 65
BLAST of SMED30002490 vs. Planmine SMEST
Match: SMESG000062719.1 (SMESG000062719.1) HSP 1 Score: 246.514 bits (628), Expect = 2.562e-75 Identity = 147/387 (37.98%), Postives = 230/387 (59.43%), Query Frame = 1 Query: 106 VTRAVKRKSLENNECRI------LIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLND-FKQIWNKTNFIMEIFSIKQHKINKLNAIFKIFLTILDVTVELQRKLLYFCDMKTILPKFSKLKWNPDQIYFDSNHKIWEWLKIELNVFYPKLFVEKRIQLLQNQVKNYESLKKKLSDSLPEPILSKFLSEMNTFLSYFHSTEKYYKNSFVIVQGRVPG---NVLQSVIIENQYINVSLLAKIIVEKVLNFDSKPEEFDYMTPAFEISHVHRLXXXXXXXXXXXXXXTEKIFS--NFISLRLERSVVFRKKKILPTYNNCYELDEDYQFIYLNFLKD------QLKNSTPN 1212 +TR+ RK +C + +IKRKF E+ C+IC++N+ ++LDTCLHEFCL C+C WL CP+CKQ+P LLY + DSF + L+ F++ W K N I++ FS + + I KL + FL +T++ QR +YFC+MKT L K ++ WNPD + D +HKIW WL IEL+VF+ V+K I Q +V NY L K+LS LP+ S F++EMNTF+S+F S + YY ++ R+ + ++S + + +N S L+K++ K+ +++ + D + FEISH+ L I+ + G+ E I + +FI+LR+ RS+ K + Y NCY+L+E Y++IYL++L+D Q++NST + Sbjct: 4 ITRSSNRK-----DCTVKIVEQEIIKRKFIEETCAICMDNIRHCIALDTCLHEFCLDCICNWLLKAVSCPQCKQIPHVLLYKIQNDSFTSGIRLDKKFEEEWLKHNLIVDFFSNRTYYIKKLKKLLISFLKNFKLTIQCQRIFVYFCNMKTTLFKRYQIPWNPDNLTIDPSHKIWHWLSIELSVFFESSTVKKSISNFQIKVFNYRDLVKELSALLPDRFRSLFIAEMNTFISFFDSCDNYY----YLLDARLVSCDISGMKSWVFDKGRVNFSFLSKVLTGKIFQLENRNVDNDSLMTIFEISHIESL-VKILISTEGSVGEDEVILNLFSFINLRIRRSISESFHKDIQ-YKNCYQLNETYKYIYLSYLQDELSKLSQIENSTSS 379
BLAST of SMED30002490 vs. Planmine SMEST
Match: SMESG000081165.1 (SMESG000081165.1) HSP 1 Score: 230.72 bits (587), Expect = 2.507e-69 Identity = 132/358 (36.87%), Postives = 206/358 (57.54%), Query Frame = 1 Query: 142 NECRILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLN-DFKQIWNKTNFIMEIFSIKQHKINKLNAIFKIFLTILDVTVELQRKLLYFCDMKTILPKFSKLKWNPDQIYFDSNHKIWEWLKIELNVFYPKLFVEKRIQLLQNQVKNYESLKKKLSDSLPEPILSKFLSEMNTFLSYFHSTEKYYKNSFV-IVQGRVPGNVLQSVIIENQYINVSLLAKIIVEKVLNFDSKPEEF--DYMTPAFEISHV-HRLXXXXXXXXXXXXXXTEKIFSNFISLRLERSV--VFRKKKILPTYNNCYELDEDYQFIYLNFLKDQL 1194 N+ I+RKFKED C IC++ ++ +++L+ CLHEFCL C+ WL H CPKCKQ+P +++Y V D F + LN F W + IM FS + K+ L + + +V+ QRKLLYFC MKT L K K + + Q+ +S+HKIW+WLKIEL+VFY K V+K ++ Q+ + Y L LS + +P+L +FL EM+ FLS+F S E YY + + +V G++P NV SVII+ IN+ + ++++V K+ + + + D + +EISHV H + + + K + + F+SLRL RS+ +Y + + L +Y +IYL+ +DQ+ Sbjct: 4 NDLTTPIQRKFKEDICPICMDTIKNLIALNPCLHEFCLNCIGMWLVKHFSCPKCKQIPYSIIYKVTNDFFHSFITLNVTFVDAWMQRGLIMRFFSTRSQKMQTLRKRLRFLFKDISYSVDFQRKLLYFCGMKTTLFKKYKTREDFQQLSLNSSHKIWQWLKIELSVFYTKDQVDKILRSYQSDLSTYSELVTYLSMFIRKPVLKRFLEEMDAFLSFFGSCENYYDFTNIKMVSGKLPENVCDSVIIDAGAINLGVFSRLLVHKIFELELENVDINSDKLMAVYEISHVNHITDTIVTENQTKTKDDCIAMLTKFMSLRLRRSISSFVTSNSTQYSYGDYFNLIPEYAYIYLSCYRDQI 361
BLAST of SMED30002490 vs. Planmine SMEST
Match: SMESG000081165.1 (SMESG000081165.1) HSP 1 Score: 221.476 bits (563), Expect = 9.999e-66 Identity = 132/370 (35.68%), Postives = 206/370 (55.68%), Query Frame = 1 Query: 142 NECRILIKRKFKEDDCSICIENVETVVSLDTCLHEFCLLCLCKWLSMHNLCPKCKQVPSNLLYHVDKDSFLLSLPLN-DFKQIWNKTNFIMEIFSIKQHKINKLNAIFKIFLTILDVTVELQRKLLYFCDMKTILPKFSKLK------------WNPDQIYFDSNHKIWEWLKIELNVFYPKLFVEKRIQLLQNQVKNYESLKKKLSDSLPEPILSKFLSEMNTFLSYFHSTEKYYKNSFV-IVQGRVPGNVLQSVIIENQYINVSLLAKIIVEKVLNFDSKPEEF--DYMTPAFEISHV-HRLXXXXXXXXXXXXXXTEKIFSNFISLRLERSV--VFRKKKILPTYNNCYELDEDYQFIYLNFLKDQL 1194 N+ I+RKFKED C IC++ ++ +++L+ CLHEFCL C+ WL H CPKCKQ+P +++Y V D F + LN F W + IM FS + K+ L + + +V+ QRKLLYFC MKT L K K + + Q+ +S+HKIW+WLKIEL+VFY K V+K ++ Q+ + Y L LS + +P+L +FL EM+ FLS+F S E YY + + +V G++P NV SVII+ IN+ + ++++V K+ + + + D + +EISHV H + + + K + + F+SLRL RS+ +Y + + L +Y +IYL+ +DQ+ Sbjct: 4 NDLTTPIQRKFKEDICPICMDTIKNLIALNPCLHEFCLNCIGMWLVKHFSCPKCKQIPYSIIYKVTNDFFHSFITLNVTFVDAWMQRGLIMRFFSTRSQKMQTLRKRLRFLFKDISYSVDFQRKLLYFCGMKTTLFKKYKTREYQCESIRSYKIRDFQQLSLNSSHKIWQWLKIELSVFYTKDQVDKILRSYQSDLSTYSELVTYLSMFIRKPVLKRFLEEMDAFLSFFGSCENYYDFTNIKMVSGKLPENVCDSVIIDAGAINLGVFSRLLVHKIFELELENVDINSDKLMAVYEISHVNHITDTIVTENQTKTKDDCIAMLTKFMSLRLRRSISSFVTSNSTQYSYGDYFNLIPEYAYIYLSCYRDQI 373
BLAST of SMED30002490 vs. Planmine SMEST
Match: SMESG000081143.1 (SMESG000081143.1) HSP 1 Score: 174.481 bits (441), Expect = 6.121e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 Query: 964 MTPAFEISHVHRLXXXXXXXXXXXXXXTEKIFSNFISLRLERSVVFRKKKILPTYNNCYELDEDYQFIYLNFLKDQLKNSTPNSMLNKXXXXXXXXXXXXRKSAGQITIDLTGE 1305 MTPAFEISHVHRLIKSIIKQKDSDKGKTEKIFSNFISLRLERSVVFRKKKILPTYNNCYELDEDYQFIYLNFLKDQLKNSTPNSMLNKSSIDSDPFFSSSRKSAGQITIDLTGE Sbjct: 1 MTPAFEISHVHRLIKSIIKQKDSDKGKTEKIFSNFISLRLERSVVFRKKKILPTYNNCYELDEDYQFIYLNFLKDQLKNSTPNSMLNKSSIDSDPFFSSSRKSAGQITIDLTGE 114
BLAST of SMED30002490 vs. Planmine SMEST
Match: SMESG000062719.1 (SMESG000062719.1) HSP 1 Score: 133.265 bits (334), Expect = 5.734e-35 Identity = 84/227 (37.00%), Postives = 135/227 (59.47%), Query Frame = 1 Query: 529 MKTILPKFSKLKWNPDQIYFDSNHKIWEWLKIELNVFYPKLFVEKRIQLLQNQVKNYESLKKKLSDSLPEPILSKFLSEMNTFLSYFHSTEKYYKNSFVIVQGRVPG---NVLQSVIIENQYINVSLLAKIIVEKVLNFDSKPEEFDYMTPAFEISHVHRLXXXXXXXXXXXXXXTEKIFS--NFISLRLERSVVFRKKKILPTYNNCYELDEDYQFIYLNFLKDQL 1194 MKT L K ++ WNPD + D +HKIW WL IEL+VF+ V+K I Q +V NY L K+LS LP+ S F++EMNTF+S+F S + YY ++ R+ + ++S + + +N S L+K++ K+ +++ + D + FEISH+ L I+ + G+ E I + +FI+LR+ RS+ K + Y NCY+L+E Y++IYL++L+D+L Sbjct: 1 MKTTLFKRYQIPWNPDNLTIDPSHKIWHWLSIELSVFFESSTVKKSISNFQIKVFNYRDLVKELSALLPDRFRSLFIAEMNTFISFFDSCDNYY----YLLDARLVSCDISGMKSWVFDKGRVNFSFLSKVLTGKIFQLENRNVDNDSLMTIFEISHIESL-VKILISTEGSVGEDEVILNLFSFINLRIRRSISESFHKDIQ-YKNCYQLNETYKYIYLSYLQDEL 221 The following BLAST results are available for this feature:
BLAST of SMED30002490 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of SMED30002490 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30002490 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of SMED30002490 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of SMED30002490 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30002490 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of SMED30002490 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of SMED30002490 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of SMED30002490 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of SMED30002490 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30002490 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30002490 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30002490 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30002490 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002490 ID=SMED30002490|Name=SMED30002490|organism=Schmidtea mediterranea sexual|type=transcript|length=1839bpback to top protein sequence of SMED30002490-orf-1 >SMED30002490-orf-1 ID=SMED30002490-orf-1|Name=SMED30002490-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=406bp MFQNYVTRAVKRKSLENNECRILIKRKFKEDDCSICIENVETVVSLDTCLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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